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	HAMAP-Scan download results

This form should be used to retrieve the results of previous submission(s) to HAMAP-Scan. Each submission has been registered under a three-letter code. When the submitted sequences match against one or more profiles of the HAMAP family collection, they will have been processed by our semi-automatic annotation system according to their match score. Therefore the results can be available in one or more files. These file names are based on the three-letter request code and a specific extension which will be one of the following:

• ok: the submitted sequences considered to be trusted members of a HAMAP family and consequently annotated by our annotation system.
• dubious: the submitted sequences considered as putative members of a HAMAP family, nevertheless annotated by our annotation system.
• overlap: the submitted sequences have overlapping matches against the HAMAP families. In this case, our system evaluated the more suitable annotation to apply and consequently annotated the sequences.
• fusion: the sequences you've submited appear to result from a gene fusion. They have not been annotated by our annotation system.

The sequences annotated by our annotation system are returned in the UniProtKB/Swiss-Prot format. Please note that in case of missing information such as incomplete taxonomy the HAMAP system will not be able to assign annotation to some proteins, even though they belong to one (or more) HAMAP family. An additional section, the INTERNAL SECTION may be appended to any annotated entry. This section may contain the following types of lines:

• ** HA: family membership, with scores.
• ** HR: removed lines (lines that were derived from the original, submitted annotation and that were replaced by the HAMAP annotation system).
• ** HU: unassignable annotation due to insufficient taxonomy information as supplied by the submitter.
• ** HW: warnings on the sequence, such as possible start-site problems, absence of catalytic or ligand-binding residues, etc.

If you need assistance interpreting your HAMAP-Scan results, please contact us.

Your results will be available during one month after their submission. After that period, you should resubmit them, if required, using the HAMAP-Scan form.
If you use the results of this server please cite: "Automatic annotation of microbial proteomes in Swiss-Prot". Comput. Biol. Chem. 27:49-58(2003).

Retrieve your HAMAP-Scan results
Enter the three-letter request code that was displayed when you submitted your data to HAMAP-Scan. In case you don't remember it please refer to the e-mail that was sent to you to confirm your submission.	Request code:
Enter the password that you entered when you submitted your sequence file. If you didn't give a password, leave blank.	Password: