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HAMAP: Fully sequenced bacteria that are known to interact with plants or perform photosynthesis
Definitions
Anoxygenic photosynthesis: Photosynthesis (the process which converts light energy into NAD(P)H, the reducing power of which is then used to reduce carbon dioxide to produce organic compounds) that does not produce molecular oxygen. Anoxygenic bacteria (purple sulfur and non-sulfur bacteria, green sulfur and non-sulfur bacteria and Heliobacteria) have only one photosynthetic reaction center.
Commensal: An organism living in an external relationship with another, in which one partner may gain more than the other. Some commensal bacteria become pathogenic under certain growth conditions.
Endophyte: An organism living within the tissues of a plant without causing it substantive harm.
Oxygenic photosynthesis: Photosynthesis (the process which converts light energy into ATP and NAD(P)H, the reducing power of which is then used to reduce carbon dioxide to produce organic compounds) that produces molecular oxygen as a by-product of water-splitting. Occurs in cyanobacteria, algae and plants and requires both reaction centers (photosystem I and II).
Pathogen: A disease producing bacterium. These can be intracellular or extracellular, obligate or not. Some organisms are only pathogenic under certain growth conditions.
Saprophyte: An organism living heterotrophically on dead organic matter.
Symbiont: An organism living in an intimate, external relationship with another, in which the mutual benefits usually outweigh the disadvantages.
[Anoxygenic photosynthesis ] [Oxygenic photosynthesis ] [Plant associated ] [Plant commensal ] [Plant endophyte ] [Plant endophyte? ] [Plant epiphyte ] [Plant extracellular endosymbiont ] [Plant pathogen ] [Plant saprophyte ] [Plant symbiont ]

Anoxygenic photosynthesis
ALLVD Allochromatium vinosum (strain ATCC 17899 / DSM 180 / NBRC 103801 / D) (Chromatium vinosum)
BRASB Bradyrhizobium sp. (strain BTAi1 / ATCC BAA-1182)
BRASO Bradyrhizobium sp. (strain ORS278)
CHLP8 Chlorobaculum parvum (strain NCIB 8327) (Chlorobium vibrioforme subsp. thiosulfatophilum (strain DSM 263 / NCIB 8327))
CHLCH Chlorobium chlorochromatii (strain CaD3)
CHLL2 Chlorobium limicola (strain DSM 245 / NBRC 103803)
CHLPB Chlorobium phaeobacteroides (strain BS1)
CHLPD Chlorobium phaeobacteroides (strain DSM 266)
CHLTE Chlorobium tepidum
CHLAD Chloroflexus aggregans (strain MD-66 / DSM 9485)
CHLSY Chloroflexus aurantiacus (strain ATCC 29364 / DSM 637 / Y-400-fl)
CHLAA Chloroflexus aurantiacus (strain ATCC 29366 / DSM 635 / J-10-fl)
CHLT3 Chloroherpeton thalassium (strain ATCC 35110 / GB-78)
UCYNA cyanobacterium UCYN-A
DINSH Dinoroseobacter shibae (strain DFL 12)
HELMI Heliobacterium modesticaldum (strain ATCC 51547 / Ice1)
JANSC Jannaschia sp. (strain CCS1)
METPP Methylibium petroleiphilum (strain PM1)
PELLD Pelodictyon luteolum (strain DSM 273) (Chlorobium luteolum (strain DSM 273))
PELPB Pelodictyon phaeoclathratiforme (strain DSM 5477 / BU-1)
PROA2 Prosthecochloris aestuarii (strain DSM 271 / SK 413)
PROVI Prosthecochloris vibrioformis (strain DSM 265) (Chlorobium vibrioforme subsp. thiosulfatophilum (strain DSM 265)) (Chlorobium phaeovibrioides (strain DSM 265))
RHOCB Rhodobacter capsulatus (strain ATCC BAA-309 / NBRC 16581 / SB1003)
RHOS4 Rhodobacter sphaeroides (strain ATCC 17023 / 2.4.1 / NCIB 8253 / DSM 158)
RHOS5 Rhodobacter sphaeroides (strain ATCC 17025 / ATH 2.4.3)
RHOS1 Rhodobacter sphaeroides (strain ATCC 17029 / ATH 2.4.9)
RHOSK Rhodobacter sphaeroides (strain KD131 / KCTC 12085)
RHOVT Rhodomicrobium vannielii (strain ATCC 17100 / ATH 3.1.1 / DSM 162 / LMG 4299)
RHOPA Rhodopseudomonas palustris (strain ATCC BAA-98 / CGA009)
RHOP5 Rhodopseudomonas palustris (strain BisA53)
RHOPB Rhodopseudomonas palustris (strain BisB18)
RHOPS Rhodopseudomonas palustris (strain BisB5)
RHOPX Rhodopseudomonas palustris (strain DX-1)
RHOP2 Rhodopseudomonas palustris (strain HaA2)
RHOPT Rhodopseudomonas palustris (strain TIE-1)
RHOCS Rhodospirillum centenum (strain ATCC 51521 / SW)
RHORT Rhodospirillum rubrum (strain ATCC 11170 / NCIB 8255)
ROSCS Roseiflexus castenholzii (strain DSM 13941 / HLO8)
ROSS1 Roseiflexus sp. (strain RS-1)
ROSDO Roseobacter denitrificans (strain ATCC 33942 / OCh 114) (Erythrobacter sp. (strain OCh 114)) (Roseobacter denitrificans)
ROSLO Roseobacter litoralis (strain ATCC 49566 / DSM 6996 / JCM 21268 / NBRC 15278 / OCh 149)



Oxygenic photosynthesis
ACAM1 Acaryochloris marina (strain MBIC 11017)
ANAVT Anabaena variabilis (strain ATCC 29413 / PCC 7937)
CYAA5 Cyanothece sp. (strain ATCC 51142)
CYAP7 Cyanothece sp. (strain PCC 7424) (Synechococcus sp. (strain ATCC 29155))
CYAP4 Cyanothece sp. (strain PCC 7425 / ATCC 29141)
CYAP2 Cyanothece sp. (strain PCC 7822)
CYAP8 Cyanothece sp. (strain PCC 8801) (Synechococcus sp. (strain PCC 8801 / RF-1))
CYAP0 Cyanothece sp. (strain PCC 8802) (Synechococcus sp. (strain RF-2))
GLOVI Gloeobacter violaceus (strain PCC 7421)
MICAN Microcystis aeruginosa (strain NIES-843)
NOSA0 Nostoc azollae (strain 0708) (Anabaena azollae (strain 0708))
NOSP7 Nostoc punctiforme (strain ATCC 29133 / PCC 73102)
NOSS1 Nostoc sp. (strain PCC 7120 / UTEX 2576)
PROMS Prochlorococcus marinus (strain AS9601)
PROM4 Prochlorococcus marinus (strain MIT 9211)
PROM2 Prochlorococcus marinus (strain MIT 9215)
PROM0 Prochlorococcus marinus (strain MIT 9301)
PROM3 Prochlorococcus marinus (strain MIT 9303)
PROM9 Prochlorococcus marinus (strain MIT 9312)
PROMM Prochlorococcus marinus (strain MIT 9313)
PROM5 Prochlorococcus marinus (strain MIT 9515)
PROM1 Prochlorococcus marinus (strain NATL1A)
PROMT Prochlorococcus marinus (strain NATL2A)
PROMA Prochlorococcus marinus (strain SARG / CCMP1375 / SS120)
PROMP Prochlorococcus marinus subsp. pastoris (strain CCMP1986 / MED4)
SYNE7 Synechococcus elongatus (strain PCC 7942) (Anacystis nidulans R2)
SYNP6 Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) (Anacystis nidulans)
SYNP2 Synechococcus sp. (strain ATCC 27264 / PCC 7002 / PR-6) (Agmenellum quadruplicatum)
SYNS3 Synechococcus sp. (strain CC9311)
SYNSC Synechococcus sp. (strain CC9605)
SYNS9 Synechococcus sp. (strain CC9902)
SYNJB Synechococcus sp. (strain JA-2-3B'a(2-13)) (Cyanobacteria bacterium Yellowstone B-Prime)
SYNJA Synechococcus sp. (strain JA-3-3Ab) (Cyanobacteria bacterium Yellowstone A-Prime)
SYNR3 Synechococcus sp. (strain RCC307)
SYNPW Synechococcus sp. (strain WH7803)
SYNPX Synechococcus sp. (strain WH8102)
SYNY3 Synechocystis sp. (strain ATCC 27184 / PCC 6803 / N-1)
THEEB Thermosynechococcus elongatus (strain BP-1)
TRIEI Trichodesmium erythraeum (strain IMS101)



Plant associated
MARPP Marinomonas posidonica (strain CECT 7376 / NCIMB 14433 / IVIA-Po-181)



Plant commensal
BACA2 Bacillus amyloliquefaciens (strain FZB42)
ERWT9 Erwinia tasmaniensis (strain DSM 17950 / Et1/99)
PSEF5 Pseudomonas fluorescens (strain Pf-5 / ATCC BAA-477)
PSEFS Pseudomonas fluorescens (strain SBW25)



Plant endophyte
AZOSB Azoarcus sp. (strain BH72)
AZOS1 Azospirillum sp. (strain B510)
BURPP Burkholderia phytofirmans (strain DSM 17436 / PsJN)
ENT38 Enterobacter sp. (strain 638)
GLUDA Gluconacetobacter diazotrophicus (strain ATCC 49037 / DSM 5601 / PAl5)
HERSS Herbaspirillum seropedicae (strain SmR1)
KLEP3 Klebsiella pneumoniae (strain 342)
METPB Methylobacterium populi (strain ATCC BAA-705 / NCIMB 13946 / BJ001)
PSEPW Pseudomonas putida (strain W619)
SERP5 Serratia proteamaculans (strain 568)
STRM5 Stenotrophomonas maltophilia (strain R551-3)



Plant endophyte?
DYAFD Dyadobacter fermentans (strain ATCC 700827 / DSM 18053 / NS114)



Plant epiphyte
BACST Bacillus subtilis (strain BSn5)
ERWBE Erwinia billingiae (strain Eb661)
MICTS Microbacterium testaceum (strain StLB037)



Plant extracellular endosymbiont
SERSA Serratia sp. (strain AS9)



Plant pathogen
ACIAP Acidovorax avenae (strain ATCC 19860 / DSM 7227 / JCM 20985 / NCPPB 1011)
ACIAC Acidovorax citrulli (strain AAC00-1) (Acidovorax avenae subsp. citrulli)
AGRT5 Agrobacterium tumefaciens (strain C58 / ATCC 33970)
AYWBP Aster yellows witches'-broom phytoplasma (strain AYWB)
BURGB Burkholderia glumae (strain BGR1)
CLAM3 Clavibacter michiganensis subsp. michiganensis (strain NCPPB 382)
CLAMS Clavibacter michiganensis subsp. sepedonicus (strain ATCC 33113 / JCM 9667)
DICD3 Dickeya dadantii (strain 3937) (Erwinia chrysanthemi (strain 3937))
DICD5 Dickeya dadantii (strain Ech586)
DICDC Dickeya dadantii (strain Ech703)
DICZE Dickeya zeae (strain Ech1591)
ERWAE Erwinia amylovora (strain ATCC 49946 / CCPPB 0273 / Ea273 / 27-3)
ERWAC Erwinia amylovora (strain CFBP1430)
ERWCT Erwinia carotovora subsp. atroseptica (Pectobacterium atrosepticum)
ERWP6 Erwinia pyrifoliae (strain DSM 12163 / CIP 106111 / Ep16/96)
ERWPE Erwinia pyrifoliae (strain Ep1/96)
ERWSE Erwinia sp. (strain Ejp617)
LEIXX Leifsonia xyli subsp. xyli (strain CTCB07)
LIBAP Liberibacter asiaticus (strain psy62)
LIBSC Liberibacter solanacearum (strain CLso-ZC1)
ONYPE Onion yellows phytoplasma (strain OY-M)
PANAM Pantoea ananatis (strain LMG 20103)
PECCP Pectobacterium carotovorum subsp. carotovorum (strain PC1)
PHYAS Phytoplasma australiense
PHYMT Phytoplasma mali (strain AT)
PSEAB Pseudomonas aeruginosa (strain UCBPP-PA14)
PSE14 Pseudomonas syringae pv. phaseolicola (strain 1448A / Race 6)
PSEU2 Pseudomonas syringae pv. syringae (strain B728a)
PSESM Pseudomonas syringae pv. tomato (strain DC3000)
RALSO Ralstonia solanacearum (strain GMI1000) (Pseudomonas solanacearum)
RALS8 Ralstonia solanacearum (strain Po82)
STRSW Streptomyces scabies (strain 87.22) (Streptomyces scabiei)
XANAP Xanthomonas albilineans (strain GPE PC73 / CFBP 7063)
XANAC Xanthomonas axonopodis pv. citri (Citrus canker)
XANCP Xanthomonas campestris pv. campestris
XANC8 Xanthomonas campestris pv. campestris (strain 8004)
XANCB Xanthomonas campestris pv. campestris (strain B100)
XANC5 Xanthomonas campestris pv. vesicatoria (strain 85-10)
XANOR Xanthomonas oryzae pv. oryzae
XANOM Xanthomonas oryzae pv. oryzae (strain MAFF 311018)
XANOP Xanthomonas oryzae pv. oryzae (strain PXO99A)
XYLFA Xylella fastidiosa
XYLFG Xylella fastidiosa (strain GB514)
XYLFM Xylella fastidiosa (strain M12)
XYLF2 Xylella fastidiosa (strain M23)
XYLFT Xylella fastidiosa (strain Temecula1 / ATCC 700964)
Host: Vitis (grape)
AGRVS Agrobacterium vitis (strain S4 / ATCC BAA-846) (Rhizobium vitis (strain S4))



Plant saprophyte
AGRSH Agrobacterium sp. (strain H13-3) (Rhizobium lupini (strain H13-3))
BURA4 Burkholderia ambifaria (strain MC40-6)
BURVG Burkholderia vietnamiensis (strain G4 / LMG 22486) (Burkholderia cepacia (strain R1808))
CELJU Cellvibrio japonicus (strain Ueda107) (Pseudomonas fluorescens subsp. cellulosa)
CLOTH Clostridium thermocellum (strain ATCC 27405 / DSM 1237)
CLOTL Clostridium thermocellum (strain DSM 1313 / LMG 6656 / LQ8)
CORGB Corynebacterium glutamicum (strain R)
FRAAA Frankia alni (strain ACN14a)
FRASN Frankia sp. (strain EAN1pec)
FRASU Frankia sp. (strain EuI1c)
LACLK Lactococcus lactis subsp. lactis (strain KF147)
LISW6 Listeria welshimeri serovar 6b (strain ATCC 35897 / DSM 20650 / SLCC5334)
METNO Methylobacterium nodulans (strain ORS2060 / LMG 21967)
MICAI Micromonospora aurantiaca (strain ATCC 27029 / DSM 43813 / JCM 10878 / NBRC 16125 / INA 9442)
MICSL Micromonospora sp. (strain L5)
PSEBN Pseudomonas brassicacearum (strain NFM421)
PSEPF Pseudomonas fluorescens (strain Pf0-1)
PSEPB Pseudomonas putida (strain BIRD-1)
PSEPK Pseudomonas putida (strain KT2440)



Plant symbiont
ARCNC Arcobacter nitrofigilis (strain ATCC 33309 / DSM 7299 / LMG 7604 / NCTC 12251 / CI) (Campylobacter nitrofigilis)
AZOC5 Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / ORS 571)
BRAJA Bradyrhizobium japonicum
BRASB Bradyrhizobium sp. (strain BTAi1 / ATCC BAA-1182)
BRASO Bradyrhizobium sp. (strain ORS278)
BURP8 Burkholderia phymatum (strain DSM 17167 / STM815)
BURSC Burkholderia sp. (strain CCGE1002)
CUPTR Cupriavidus taiwanensis (strain R1 / LMG 19424) (Ralstonia taiwanensis (strain LMG 19424))
FRAAA Frankia alni (strain ACN14a)
FRASC Frankia sp. (strain CcI3)
FRASN Frankia sp. (strain EAN1pec)
FRASU Frankia sp. (strain EuI1c)
FRADG Frankia symbiont subsp. Datisca glomerata
MESCW Mesorhizobium ciceri bv. biserrulae (strain HAMBI 2942 / LMG 23838 / WSM1271)
MESOW Mesorhizobium opportunistum (strain LMG 24607 / HAMBI 3007 / WSM2075)
METNO Methylobacterium nodulans (strain ORS2060 / LMG 21967)
METRJ Methylobacterium radiotolerans (strain ATCC 27329 / DSM 1819 / JCM 2831)
MICAI Micromonospora aurantiaca (strain ATCC 27029 / DSM 43813 / JCM 10878 / NBRC 16125 / INA 9442)
MICSL Micromonospora sp. (strain L5)
NOSA0 Nostoc azollae (strain 0708) (Anabaena azollae (strain 0708))
NOSP7 Nostoc punctiforme (strain ATCC 29133 / PCC 73102)
PSEU5 Pseudomonas stutzeri (strain A1501)
PSEUT Pseudomonas stutzeri (strain ATCC 17588 / DSM 5190 / CCUG 11256 / JCM 5965 / LMG 11199 / NCIMB 11358 / Stanier 221)
PSEU6 Pseudomonas stutzeri (strain DSM 4166 / CMT.9.A)
RHIEC Rhizobium etli (strain CFN 42 / ATCC 51251)
RHIE6 Rhizobium etli (strain CIAT 652)
RHILS Rhizobium leguminosarum bv. trifolii (strain WSM1325)
RHILW Rhizobium leguminosarum bv. trifolii (strain WSM2304)
RHIL3 Rhizobium leguminosarum bv. viciae (strain 3841)
RHILO Rhizobium loti (strain MAFF303099) (Mesorhizobium loti)
RHIME Rhizobium meliloti (strain 1021) (Ensifer meliloti) (Sinorhizobium meliloti)
RHISN Rhizobium sp. (strain NGR234)
SINMW Sinorhizobium medicae (strain WSM419) (Ensifer medicae)
SINMK Sinorhizobium meliloti (strain AK83)
SINMB Sinorhizobium meliloti (strain BL225C)
SINMM Sinorhizobium meliloti (strain SM11)