HAMAP: Aeropyrum pernix (strain ATCC 700893 / DSM 11879 / JCM 9820 / NBRC 100138 / K1) complete proteome
General information

Species:  Aeropyrum pernix (strain ATCC 700893 / DSM 11879 / JCM 9820 / NBRC 100138 / K1)
Species code: AERPE
Taxonomy: Archaea; Crenarchaeota; Thermoprotei; Desulfurococcales; Desulfurococcaceae; Aeropyrum (TaxID: 272557) [NEWT/ NCBI]
Description: A strictly aerobic hyperthermophilic archaeon isolated from a coastal solfataric thermal vent at Kodakara-Jima Island, Japan in 1993. It is a heterotroph that grows optimally at 90 to 95 degrees Celsius, pH 7.0, and a salinity of 3.5%. It is spherical shaped and covered by a cell envelope (S-layer-like structure). It contains C25-isopranyl archaeol (glycerol diether) as the hydrocarbon chain in the core lipid.
Properties: Presence of flagella: not known
Human pathogen: No
Interaction: No
Number of membranes: 1
Number of inteins: 1
Statistics: Number of AERPE entries in the UniProt Knowledgebase: 1700 (364 in UniProtKB/Swiss-Prot + 1336 in UniProtKB/TrEMBL)


Genome(s) sequenced

Strain:    ATCC 700893 / DSM 11879 / JCM 9820 / NBRC 100138 / K1
Genome structure:
Chromosome EMBL accession number BA000002 (circular; 1,669,696 bp) (download entry)
Reference(s):
[1] MEDLINE=99310339; PubMed=10382966; [ NCBI , EBI , Israel , Japan ]
Kawarabayasi Y., Hino Y., Horikawa H., Yamazaki S., Haikawa Y., Jin-no K., Takahashi M., Sekine M., Baba S., Ankai A., Kosugi H., Hosoyama A., Fukui S., Nagai Y., Nishijima K., Nakazawa H., Takamiya M., Masuda S., Funahashi T., Tanaka T., Kudoh Y., Yamazaki J., Kushida N., Oguchi A., Aoki K., Kubota K., Nakamura Y., Nomura N., Sako Y., Kikuchi H. ;
"Complete genome sequence of an aerobic hyper-thermophilic crenarchaeon, Aeropyrum pernix K1.";
DNA Res. 6:83-101(1999).
Web links:
Official genome site(s):
http://www.bio.nite.go.jp/dogan/MicroTop?GENOME_ID=ape_G1
Other web sites:
Entrez Genome Project: http://www.ncbi.nlm.nih.gov/sites/entrez?Db=genomeprj&Cmd=DetailsSearch&Term=txid272557%5Borgn%5D
Genome Atlas: http://www.cbs.dtu.dk/services/gwBrowser/project.php?pid=211
GIB (DDBJ): http://gib.genes.nig.ac.jp/single/index.php?spid=Aper_K1
JVCI CMR: http://cmr.jcvi.org/tigr-scripts/CMR/GenomePage.cgi?database=ntap01
Karyn's Genomes: http://www.ebi.ac.uk/2can/genomes/archaea/Aeropyrum_pernix.html
PEDANT: http://pedant.gsf.de/pedant3htmlview/pedant3view?Method=analysis&Db=p3_p211_Aer_perni
 EBI Proteome Analysis page



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