HAMAP: Chlamydomonas reinhardtii (Chlamydomonas smithii) complete proteome
General information

Species:  Chlamydomonas reinhardtii (Chlamydomonas smithii)
Species code: CHLRE
Taxonomy: Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Chlamydomonadales; Chlamydomonadaceae; Chlamydomonas (TaxID: 3055) [NEWT/ NCBI]
Description: Chlamydomonas reinhardtii is a model green algae of the chlorophycean lineage. It is used extensively as a model system for the study of photosynthesis, cell cycle and in cell motility. It grows photoautotrophically, but can also grow in the presence of acetate, thus rendering photosynthesis facultative unlike the case in higher plants.
Properties: Number of inteins:0
Statistics: Number of CHLRE entries in the UniProt Knowledgebase: 14340 (107 in UniProtKB/Swiss-Prot + 14233 in UniProtKB/TrEMBL)


Genome(s) sequenced

Strain:   
Genome structure:
Chloroplast EMBL accession number BK000554 (circular; 203,828 bp) (download entry)
Reference(s):
[1] PubMed=12417694; [ NCBI , EBI , Israel , Japan ]
Maul J.E., Lilly J.W., Cui L., dePamphilis C.W., Miller W., Harris E.H., Stern D.B. ;
"The Chlamydomonas reinhardtii plastid chromosome: islands of genes in a sea of repeats.";
Plant Cell 14:2659-2679(2002).
Web links:

Strain:    CC-503
Genome structure:
• Chloroplast EMBL accession number FJ423446 (circular; 204,159 bp) (download entry)
• Unassembled WGS sequence EMBL accession number ABCN01000000 (unknown;  bp) (download entry)
Reference(s):
[1] Smith D.R. ;
"Nucleotide diversity in the chloroplast genome of Chlamydomonas reinhardtii.";
Submitted (OCT-2008) to the EMBL/GenBank/DDBJ databases.
[2] PubMed=17932292; [ NCBI , EBI , Israel , Japan ]
Merchant S.S., Prochnik S.E., Vallon O., Harris E.H., Karpowicz S.J., Witman G.B., Terry A., Salamov A., Fritz-Laylin L.K., Marechal-Drouard L., Marshall W.F., Qu L.H., Nelson D.R., Sanderfoot A.A., Spalding M.H., Kapitonov V.V., Ren Q., Ferris P., Lindquist E., Shapiro H., Lucas S.M., Grimwood J., Schmutz J., Cardol P., Cerutti H., Chanfreau G., Chen C.L., Cognat V., Croft M.T., Dent R., Dutcher S., Fernandez E., Fukuzawa H., Gonzalez-Ballester D., Gonzalez-Halphen D., Hallmann A., Hanikenne M., Hippler M., Inwood W., Jabbari K., Kalanon M., Kuras R., Lefebvre P.A., Lemaire S.D., Lobanov A.V., Lohr M., Manuell A., Meier I., Mets L., Mittag M., Mittelmeier T., Moroney J.V., Moseley J., Napoli C., Nedelcu A.M., Niyogi K., Novoselov S.V., Paulsen I.T., Pazour G., Purton S., Ral J.P., Riano-Pachon D.M., Riekhof W., Rymarquis L., Schroda M., Stern D., Umen J., Willows R., Wilson N., Zimmer S.L., Allmer J., Balk J., Bisova K., Chen C.J., Elias M., Gendler K., Hauser C., Lamb M.R., Ledford H., Long J.C., Minagawa J., Page M.D., Pan J., Pootakham W., Roje S., Rose A., Stahlberg E., Terauchi A.M., Yang P., Ball S., Bowler C., Dieckmann C.L., Gladyshev V.N., Green P., Jorgensen R., Mayfield S., Mueller-Roeber B., Rajamani S., Sayre R.T., Brokstein P., Dubchak I., Goodstein D., Hornick L., Huang Y.W., Jhaveri J., Luo Y., Martinez D., Ngau W.C., Otillar B., Poliakov A., Porter A., Szajkowski L., Werner G., Zhou K., Grigoriev I.V., Rokhsar D.S., Grossman A.R. ;
"The Chlamydomonas genome reveals the evolution of key animal and plant functions.";
Science 318:245-250(2007).
Web links:



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