Home Proteomes Families Hamap-Scan Documents Downloads Links
HAMAP: Helicobacter hepaticus (strain ATCC 51449 / 3B1) complete proteome
General information

Species:  Helicobacter hepaticus (strain ATCC 51449 / 3B1)
Species code: HELHP
Taxonomy: Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; Helicobacteraceae; Helicobacter (TaxID: 235279) [NEWT/ NCBI]
Description: Helicobacter hepaticus is responsible for chronic hepatitis and liver cancer in mice. It has also been linked to inflammatory bowel disease in immunocompromised mice. H.hepaticus does not colonize the stomach but inhabits the lower bowel.
Properties: Presence of flagella: Yes
Human pathogen: No
Interaction: Animal pathogen in Mammalia
Number of membranes: 2
Number of inteins:0
Statistics: Number of HELHP entries in the UniProt Knowledgebase: 1872 (320 in UniProtKB/Swiss-Prot + 1552 in UniProtKB/TrEMBL)


Genome(s) sequenced

Strain:    ATCC 51449 / 3B1
Genome structure:
Chromosome EMBL accession number AE017125 (circular; 1,799,146 bp) (download entry)
Reference(s):
[1] MEDLINE=22709201; PubMed=12810954; [ NCBI , EBI , Israel , Japan ]
Suerbaum S., Josenhans C., Sterzenbach T., Drescher B., Brandt P., Bell M., Droege M., Fartmann B., Fischer H.-P., Ge Z., Hoerster A., Holland R., Klein K., Koenig J., Macko L., Mendz G.L., Nyakatura G., Schauer D.B., Shen Z., Weber J., Frosch M., Fox J.G. ;
"The complete genome sequence of the carcinogenic bacterium Helicobacter hepaticus.";
Proc. Natl. Acad. Sci. U.S.A. 100:7901-7906(2003).
Web links:
CampyDB: http://xbase.bham.ac.uk/campydb/genome.pl?id=1105
CBS: http://www.cbs.dtu.dk/services/GenomeAtlas/show-genus.php?kingdom=Bacteria&GLgenus=Helicobacter&GLspecies=hepaticus&GLstrain=ATCC51449
Entrez Genome Project: http://www.ncbi.nlm.nih.gov/sites/entrez?Db=genomeprj&Cmd=DetailsSearch&Term=txid235279%5Borgn%5D
GIB (DDBJ): http://gib.genes.nig.ac.jp/single/index.php?spid=Hhep_ATCC51449
JVCI CMR: http://cmr.jcvi.org/tigr-scripts/CMR/GenomePage.cgi?database=nthp02
Karyn's Genomes: http://www.ebi.ac.uk/2can/genomes/bacteria/Helicobacter_hepaticus.html
PEDANT: http://pedant.gsf.de/pedant3htmlview/pedant3view?Method=analysis&Db=p3_p185_Hel_hepat
 EBI Proteome Analysis page



Tools