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HAMAP annotation rule: MF_01307
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General rule information

Accession MF_01307
Dates 3-DEC-2002 (Created)
9-FEB-2012 (Last updated, Version 29)
Data class Protein

case <OC:Bacteria> or <OG:Chloroplast>
Predictors HAMAP; MF_01307_B; [distribution of match scores in UniProtKB];[seed alignment for MF_01307_B]
end case


case <OC:Archaea>
Predictors HAMAP; MF_01307_A; [distribution of match scores in UniProtKB];[seed alignment for MF_01307_A]
end case

Names Ribosomal_S5


Propagated annotation

Identifier, protein and gene names

case <OC:Bacteria> and not <OC:Cyanobacteria>
Identifier RS5
Protein name
RecName: Full=30S ribosomal protein S5;
Gene name rpsE

else case <OC:Cyanobacteria>
Identifier RS5
Protein name
RecName: Full=30S ribosomal protein S5;
Gene name rpsE, rps5

else case <OC:Archaea>
Identifier RS5
Protein name
RecName: Full=30S ribosomal protein S5P;
Gene name rps5p

else case <OG:Chloroplast>
Identifier RR5
Protein name
RecName: Full=30S ribosomal protein S5, chloroplastic;
Gene name rps5
end case

Comments
FUNCTION: With S4 and S12 plays an important role in translational accuracy (By similarity).

case <OC:Bacteria>
FUNCTION: Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body (By similarity).
SUBUNIT: Part of the 30S ribosomal subunit. Contacts proteins S4 and S8 (By similarity).

else case <OC:Archaea>
SUBUNIT: Part of the 30S ribosomal subunit. Contacts protein S4 (By similarity).

else case <OG:Chloroplast>
SUBUNIT: Part of the 30S ribosomal subunit. Contacts protein S4 (By similarity).
SUBCELLULAR LOCATION: Plastid, chloroplast.
end case

DOMAIN: The N-terminal domain interacts with the head of the 30S subunit; the C-terminal domain interacts with the body and contacts protein S4. The interaction surface between S4 and S5 is involved in control of translational fidelity.
SIMILARITY: Belongs to the ribosomal protein S5P family.

case <Feature:PS50881>
SIMILARITY: Contains 1 S5 DRBM domain.
end case

Cross-references
Pfam PF00333; Ribosomal_S5; 1;
PF03719; Ribosomal_S5_C; 1;
TIGRFAMs TIGR01021; RpsE_bact; 1;
TIGR01020; RpsE_arch; 1;
PROSITE PS00585; RIBOSOMAL_S5; 1;
PS50881; S5_DSRBD; 1; trigger=PRU00268;
Keywords
Ribonucleoprotein, Ribosomal protein, RNA-binding, rRNA-binding.
Gene Ontology
GO:0019843; Molecular function: rRNA binding.
GO:0006412; Biological process: translation.

case <OG:Chloroplast>
GO:0009507; Cellular component: chloroplast.
end case



Additional information


case <OC:Bacteria>
Size range: 146-254 amino acids
end case


case <OC:Archaea>
Size range: 197-236 amino acids
end case

Related UniRules: None
Template: P02357 (RS5_GEOSE); P21467 (RS5_BACSU); P0A7W1 (RS5_ECOLI); P0A7W4 (RS5_SALTY); Q5SHQ5 (RS5_THET8): [Recover all]
Scope: Bacteria
Archaea
Plastid
Fusion: Nter: None; Cter: None
Duplicate: in LEPBL
Plasmid encoded: None
Comments: CARRP and CENSY are fairly different, made atypical.

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UniProtKB rule member sequences