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HAMAP annotation rule: MF_01325
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General rule information

Accession MF_01325
Dates 4-FEB-2004 (Created)
18-OCT-2011 (Last updated, Version 25)
Data class Protein

case <OC:Bacteria> or <OG:Chloroplast>
Predictors HAMAP; MF_01325_B; [distribution of match scores in UniProtKB];[seed alignment for MF_01325_B]
end case


case <OC:Archaea>
Predictors HAMAP; MF_01325_A; [distribution of match scores in UniProtKB];[seed alignment for MF_01325_A]
end case

Names Ribosomal_L3


Propagated annotation

Identifier, protein and gene names

case <OC:Bacteria> and not <OC:Cyanobacteria>
Identifier RL3
Protein name
RecName: Full=50S ribosomal protein L3;
Gene name rplC

else case <OC:Cyanobacteria>
Identifier RL3
Protein name
RecName: Full=50S ribosomal protein L3;
Gene name rplC, rpl3

else case <OC:Archaea>
Identifier RL3
Protein name
RecName: Full=50S ribosomal protein L3P;
Gene name rpl3p

else case <OG:Chloroplast>
Identifier RK3
Protein name
RecName: Full=50S ribosomal protein L3, chloroplastic;
Gene name rpl3
end case

Comments
FUNCTION: One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit (By similarity).

case <OC:Bacteria>
SUBUNIT: Part of the 50S ribosomal subunit. Forms a cluster with proteins L14 and L19 (By similarity).

else case <OC:Archaea>
SUBUNIT: Part of the 50S ribosomal subunit. Forms a cluster with proteins L14 and L24e (By similarity).

else case <OG:Chloroplast>
SUBUNIT: Part of the 50S ribosomal subunit (By similarity).
SUBCELLULAR LOCATION: Plastid, chloroplast.
end case


case <OC:Proteobacteria> and <FTTag:Methylation>
PTM: Methylated by PrmB (By similarity).
end case

SIMILARITY: Belongs to the ribosomal protein L3P family.
Cross-references
Pfam PF00297; Ribosomal_L3; 1;
PROSITE PS00474; RIBOSOMAL_L3; 1;
Keywords
Ribonucleoprotein, Ribosomal protein, RNA-binding, rRNA-binding.

case <FTTag:Methylation>
Methylation.
end case

Gene Ontology
GO:0019843; Molecular function: rRNA binding.
GO:0006412; Biological process: translation.

case <OG:Chloroplast>
GO:0009507; Cellular component: chloroplast.
end case

Features

case <OC:Proteobacteria>
From: RL3_ECOLI (P60438)
Key     From     To       Description   Condition   FTGroup
MOD_RES (Optional)     150     150       N5-methylglutamine (By similarity)   Q  
end case



Additional information


case <OC:Bacteria>
Size range: 191-310 amino acids
end case


case <OC:Archaea>
Size range: 321-395 amino acids
end case

Related UniRules: None
Template: Q5SHN8 (RL3_THET8); P20279 (RL3_HALMA); Q9RXK2 (RL3_DEIRA); P60438 (RL3_ECOLI): [Recover all]
Scope: Bacteria
Archaea
Plastid
Fusion: Nter: None; Cter: None
Duplicate: in BARBK, LEPBL
Plasmid encoded: None
Comments: The Epsilonproteobacteria form a distinct sub-group within this family; they have been made atypical.

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UniProtKB rule member sequences