CLUSTAL format seed alignment for MF_00004
_____________________________________________________________________________
Features found in the protein:- The following colors are used to highlight features:
- blue indicates SIGNAL, PROPEP, TRANSMEM, DOMAIN, ZN_FING, REPEAT,
DNA_BIND and CA_BIND.
- magenta is used to display DISULFID, THIOLEST and THIOETH.
- red is used for all other features, such as INIT_MET, ACTIVE SITE,
METAL,BINDING, NP_BIND, SITE, REGION, etc.
- The ID of the sequence used as the template for feature propagation is
underlined.
- A '<' at the beginning of a sequence or '>' at the end indicate that
the protein is fused with another domain either at the N- or C-terminus.
_____________________________________________________________________________
APT_CORGL -----------------------------------------MSEQALSTFDRAREALDKK
APT_MYCTU -----------MLNVIATGLSLKARGKRRRQRWVDDGRVLALGESRRSSAISVADVVASL
APT_STRCO ----------------------------------------------MTEPTGITELLLSR
APT_MYCPU ------------------------------------------------------MNLEKF
APT_BACSU ------------------------------------------------------MDLKQY
APT_STAAM ------------------------------------------------------MDLKQY
APT_LISMO ---------------------------------------------------MEIKDLQDY
APT_FUSNN ------------------------------------------------------MDLKNY
APT_STRPN ------------------------------------------------------MNLKDY
APT_STRP1 ------------------------------------------------------MDLTNY
APT_LACLA ------------------------------------------------------MELKDY
APT_HALH5 ------------------------------------------------------MDFKQH
APT_CLOAB ------------------------------------------------------MDLKDS
APT_CLOPE ------------------------------------------------------MSLKDK
APT_THEMA ---------------------------------------------------MFKLDLKRF
APT_CALS4 ---------------------------------------------------MTLDDIKEM
APT_BUTFI -----------------------------------------------------MKKVEDY
APT_AGRFC --------------------------------MTVIASE-----------------LSAA
APT_RHIME --------------------------------MTAVQSE-----------------LISA
APT_RHILO -------------------------------MKPSLEDT-----------------LLAS
APT_BRUME -------------------------------MESGFKVT-----------------LKDA
APT_NEIMA -------------------------------MLVHPEAMSVGA-------------LADK
APT_NEIMB -------------------------------MLVHPEAMSVGA-------------LADK
APT_PSEAE --------------------------------MIFDEFT-----------------LKSQ
APT_STUST --------------------------------MIFDEFS-----------------IKTL
APT_RALN1 --------------------------------MTDASISPSSPVPASTELGDVTRYLRER
APT_HELPY -------------------------------MNETLKEE-----------------LLQS
APT_HELPJ -------------------------------MNEMLKEE-----------------LLQS
APT_ECOLI ------------------------------MTATAQQLEY----------------LKNS
APT_ECO57 ------------------------------MTATAQQLEY----------------LKNS
APT_SALTI ------------------------------MTATAQQLEF----------------LKNS
APT_SALTY ------------------------------MTATAQQLEF----------------LKNS
APT_YERPE --------------------------MTVSASKTAQQLKY----------------IKDS
APT_VIBCH --------------------------------MTTETLSL----------------IKSS
APT_HAEIN ---------------------------------MTTQLDL----------------IKSS
APT_PASMU ---------------------------------MNDKLAL----------------IKSS
APT_NOSS1 ------------------------------------------------------MDLKSL
APT_SYNY3 ------------------------------------------------------MDLKAL
APT_TREPA -------------------------------MRGIGRYHAPVD---------GHAALDRA
APT_BORBU -------------------------------MKNKTEYY------------------DQF
APT_UREPA --------------------------------------------------MINIDYIKSK
APT_MYCGE -------------------------------------------------MDQNFKLLDQA
APT_MYCPN -------------------------------------------------MKQKLQALDRA
APT_CORGL TRYVQDFPEKGVLFEDLTPVLGDAESFVAVVDAMAEAAEKL--NAEIIGGLDARGFLLGS
APT_MYCTU TRDVADFPVPGVEFKDLTPLFADRRGLAAVTEALADRAS----GADLVAGVDARGFLVAA
APT_STRCO IRDVADYPEPGVVFKDITPLLADPGAFAALTDALAEAAGRT--GATKVVGLEARGFILGA
APT_MYCPU IKDVKDFPKQGINFKDISPLLANGQALNYTIKKMAELAK----DADIIVGPDARGFLFGT
APT_BACSU VTIVPDYPKEGVQFKDITTLMDKGDVYRYATDQIVEYAKEK--QIDLVVGPEARGFIIGC
APT_STAAM VSEVQDWPKPGVSFKDITTIMDNGEAYGYATDKIVEYAKDR--DVDIVVGPEARGFIIGC
APT_LISMO VAIVNDWPKKGIVFKDITPLMNDGEAYRFATDKIVEYAKEL--KIDIIVGPEARGFIIGC
APT_FUSNN VASIENYPKEGIIFRDITPLMNDGEAYKYATEKIVEFAKDH--HIDIVVGPEARGFIFGC
APT_STRPN IATIENYPKEGITFRDISPLMADGNAYSYAVREIVQYATDK--KVDMIVGPEARGFIVGC
APT_STRP1 IASIKDYPKAGITFRDISPLMADGKAYSYAIREIAQYACDK--DIDMVVGPEARGFIIGC
APT_LACLA IATIENYPKEGVVFRDISPLMADGNAYNYAATEIVQYARDK--EIDMVVGPEARGFIIGC
APT_HALH5 ITIVENFPKEGIRFKDITTLMQNGEVYKRAIDEMARFAKEK--EVDLVVGPEARGFVVGC
APT_CLOAB IRVIDGFPKEGISFKDVTTLIQDKEAYKYSVDKIGEYLKDK--NVDLIVAPEARGFLFGA
APT_CLOPE IRVIEDFPKKGISFKDITTLIADGEGLRDSVDQMAEFFKDK--NIDVVVGPEARGFIFGV
APT_THEMA IRDIPDFPQKGIVFRDITPLLRNQEAFKEAIDRMCELVFDR--EFDLVVAPEARGFILGA
APT_CALS4 IREIPDFPKKGIRFKDITPVLKDAKAFNYSIEMLAKALEGR--KFDLIAAPEARGFLFGA
APT_BUTFI IRTIPDFPEPGIMFRDVTSILQDAEGFKLAIDEMIKLLDGV--DCDVIAGAESRGFIFGA
APT_AGRFC IRSIPDYPKPGIIFRDITTLLGNPRAFRRAVDELVQPYAGT--KIDKIAGMEARGFILGG
APT_RHIME IRSIPDYPKPGVMFRDITTLLGNPRAFRRAIDELVHPYAGT--KVDKVAGIEARGFILGG
APT_RHILO IRTIPDYPKPGILFRDITTLLGNARAFRRAIDELVHPYAGQ--KVDKIAGIEARGFILGG
APT_BRUME IRTIPDYPKPGVQFRDVTTLMGNAQAFRRAVDELVYPYAGN--RIDKVAGIEARGFILGG
APT_NEIMA IRKIENWPQKGILFHDITPVLQSAEYFRLLVDLLVYRYMDQ--KIDIVAGLDARGFIIGA
APT_NEIMB IRKIENWPQKGILFHDITPVLQSAEYFRLLVDLLVYRYMDQ--KIDIVAGLDARGFIIGA
APT_PSEAE IRAVPDFPKPGVVFRDITPLFQSPRALRMTVDSFVQRYIEA--DFSHIGAMDARGFLIGS
APT_STUST IRPVQDFPRPGVVFRDITPLFQSPKALRMVADSLIQRYVEA--DFTHIGALDARGFLVGS
APT_RALN1 IRTVPDWPQLGVMFRDITPLLQDPKSLRVLVDVFVHRYMGQ--GLNLVAGIDARGFILGS
APT_HELPY IREVKDYPKKGILFKDITTLLNYPKLFNKLIDTLKKRYLAL--NIDFIVGIEARGFILGS
APT_HELPJ IREVKDYPKKGILFKDITTLLNYPKLFNKLIDALKKRYLAL--NIDFIVGIEARGFILGS
APT_ECOLI IKSIQDYPKPGILFRDVTSLLEDPKAYALSIDLLVERYKNA--GITKVVGTEARGFLFGA
APT_ECO57 IKSIQDYPKPGILFRDVTSLLEDPKAYALSIDLLVERYKNA--GINKVVGTEARGFLFGA
APT_SALTI IKSIQDYPKPGILFRDVTSLLEDPKAYALSIELLVERYKNA--GITKVVGTEARGFLFGA
APT_SALTY IKSIQDYPKPGILFRDVTSLLEDPKAYALSIELLVERYKNA--GITKVVGTEARGFLFGA
APT_YERPE IKTIPDYPKAGILFRDVTSLLENPKAYSASIKLLSEHYSES--GVTKVVGTEARGFLFGA
APT_VIBCH IKSIPDYPKKGILFRDVTSLLEDAQAYQATIQLLVEKYKDM--GFTKVVGTEARGFLFGA
APT_HAEIN IKSIPNYPKEGIIFRDITTLLEVPAAFKATIDLIVEQYRDK--GITKVLGTESRGFIFGA
APT_PASMU IKSIPNHPKEGIIFRDITSLLEVPAAFQTVVDLFVTRYKEK--GITKVLGTESRGFIFGA
APT_NOSS1 IRDIPDFPKPGILFRDITTLLRDRQGLRYTIDFLAEKCSEANLNIDYVIGMESRGFIFGT
APT_SYNY3 IRDIPDFPKPGIMFRDITTLLNSPEGLRYTIDSLVEQCESQELVPDHVVGMESRGFLFGM
APT_TREPA IRKRIDFPKKGILYYDITGVLMNAAVFRYCLDQMVEFYRDE--HVTAVAAIESRGFIFAA
APT_BORBU ISKIPNFPKKGVLFYDITSVLLKPEVYSSLINEVYSFYNFK--KIDCIAVVESRGYLIGA
APT_UREPA IRDVPDFPKKGIVFKDITPLFLEPKIIEKIVDDFADFAKSL--NIDAIIGAESRGFLFAA
APT_MYCGE IKRFENFPNQGTLFYDITPVFSNPQLFNFVLTQMAQFIKAI--NAEAIVCPEARGFIFGG
APT_MYCPN IKRFNDFPTPGILFYDITPIFLNSELFEFVLEQMAQFIQEV--KADGIVCPEARGFIFGG
. * * : *:: :: . : ::**::..
APT_CORGL AVAYKLGLGVLAIRKKGKLPPPVVTQEYELEYGT-AALELPSEGID--IAGKNIVLIDDV
APT_MYCTU AVATRLEVGVLAVRKGGKLPRPVLSEEYYRAYGA-ATLEILAEGIE--VAGRRVVIIDDV
APT_STRCO PVALRAGLGFIPVRKAGKLPGATLSQAYDLEYGS-AEIEVHAEDL---TAGDRVLVVDDV
APT_MYCPU PTAAFLSKPFIMVRKKGKLPGEVIKHEYDLEYGK-DILEIQ-KGVI--KPGDKAIIIDDV
APT_BACSU PVAYALGVGFAPVRKEGKLPREVIKVDYGLEYGK-DVLTIHKDAIK---PGQRVLITDDL
APT_STAAM PVAYSMGIGFAPVRKEGKLPREVIRYEYDLEYGT-NVLTMHKDAIK---PGQRVLITDDL
APT_LISMO PVAYALGIGFAPVRKPGKLPRETIEMEYDLEYGT-NKLSMHSDAIK---PGQRVLITDDL
APT_FUSNN PVSYALGVGFVPVRKPGKLPREVIEYAYDLEYGS-NKLCLHKDSIK---PGQKVLVVDDL
APT_STRPN PVAFELGIGFAPVRKPGKLPREVISADYEKEYGV-DTLTMHADAIK---PGQRVLIVDDL
APT_STRP1 PVAVELGIGFAPVRKPGKLPRDVVSADYEKEYGL-DTLTMHADAIK---PGQRVLIVDDL
APT_LACLA PVAFALGVGFAPVRKPGKLPREVIEATYEKEYGT-DTLTMHSDSIK---PGQRVLIVDDL
APT_HALH5 PIAYAIGKGFVPVRKAGKLPREVISVDYGLEYGK-DRLTIHRDAIQ---KGQRVLIADDL
APT_CLOAB PVAYKIGAGFIPVRKKGKLPCETVEVTYELEYGE-DILEMHKDAIK---KGQRVAIVDDL
APT_CLOPE PVAYALGVGFIPVRKPGKLPGDTVRVEYDLEYGK-DALEIHKDAIK---PGMRVAIVDDL
APT_THEMA AMAYKLGKGFVPVRKPGKLPYKTVYEEYQLEYGT-EQLHIHEDAIE---KGQKVLIVDDV
APT_CALS4 PLAFRLGVGFVPVRKPGKLPAETLSYEYELEYGL-DSLEIHKDAVV---KGQRVVIVDDL
APT_BUTFI PLAYALGKPSVLVRKKGKLPCETIEKTYDLEYGT-ATIEMHKDAIK---PGQKVVVVDDL
APT_AGRFC AVAHQLSAGFVPIRKKGKLPHTTVRVAYSLEYGV-DEMEMHVDAVQ---PGEKVILVDDL
APT_RHIME AIAHQLSAGFIPIRKKGKLPHDTVRIAYSLEYGV-DEMEMHRDAVA---PGDKVILVDDL
APT_RHILO AVAHQLSAGFVPIRKKGKLPFDTVRVAYSLEYGL-DEMEMHKDGVA---PGEKVILVDDL
APT_BRUME AIAHQLSAGFVPIRKKGKLPRDTVRIAYSLEYGV-DEMEMHRDAIE---KGERVVLVDDL
APT_NEIMA ALAYQLNVGFVPIRKKGKLPFETVSQSYALEYGE-AAVEIHTDAVK---LGSRVLLVDDL
APT_NEIMB ALAYQLNVGFVPIRKKGKLPFETVSQSYALEYGE-AAVEIHTDAVK---LGSRVLLVDDL
APT_PSEAE AVAYALNKPLVLFRKQGKLPADVLAEGYQTEYGE-AFLEVHADSLC---EGDSVLIFDDL
APT_STUST ILAYELNKPLVLFRKQGKLPADVLSQAYSTEYGE-AHLEIHADSLC---EGDSVLLFDDL
APT_RALN1 IVAYELNLGFVPIRKKGKLPFTTVAEEYMLEYGS-ATVEIHADACK---PGDRVLLIDDL
APT_HELPY ALAYALGVGFVPVRKKGKLPAHTLSQSYSLEYGS-DSIEIHSDAFRG-IKGVRVVLIDDL
APT_HELPJ AFAYALGVGFVPVRKKGKLPAHTLSQSYSLEYGS-DSIEIHSDAFRG-IKGVRVVLVDDL
APT_ECOLI PVALGLGVGFVPVRKPGKLPRETISETYDLEYGT-DQLEIHVDAIK---PGDKVLVVDDL
APT_ECO57 PVALGLGVGFVPVRKPGKLPRETISETYDLEYGT-DQLEIHVDAIK---PGDKVLVVDDL
APT_SALTI PVALGLGVGFVPVRKPRKLPRETIAETYELEYGT-DQLEIHVDAIK---PGDNVLVVDDL
APT_SALTY PVALGLGVGFVPVRKPRKLPRETIAETYELEYGT-DQLEIHVDAIK---PGDNVLVVDDL
APT_YERPE PVALALGVGFVPVRKPGKLPRETISESYELEYGT-DTLEIHTDSIQ---PGDKVLVVDDL
APT_VIBCH PLALELGVGFVPVRKPGKLPRQTVAQSYELEYGT-DTLEIHVDAIK---PGDKVLVVDDL
APT_HAEIN PVALALGLPFELVRKPKKLPRETISQSYQLEYGQ-DTLEMHVDAIS---EGDNVLIIDDL
APT_PASMU PVALALNVPFVLVRKPGKLPRETISQTYQLEYGQ-DTLEIHTDAIH---AQDKVLIIDDL
APT_NOSS1 PLAYKLGAGFIPVRKKGKLPAAVHSIEYELEYGT-DCLEVHRDALH---PDSRVLIVDDL
APT_SYNY3 PLAYQMNAGFIPVRKPGKLPAPVHRVEYDLEYGK-DSLEIHQDAVA---PHHRVLIVDDL
APT_TREPA PFADRMGIPLILVRKAGKLPGDTYSCSYSLEYGK-ATVEVHKSDVV---AGARVLLTDDL
APT_BORBU PLSLKMQLPLVLIRKEGKLPREVFSEEYELEYGF-GRIEVHKDDVR---TYSNILLIDDI
APT_UREPA PLSIKLNKPFILVRKPNKLPNDVYSAEYTLEYGS-SRVEMHKDALK---PNQRVLIVDDL
APT_MYCGE ALASKTQLPLVLVRKANKLPGQLISASYDLEYRKHAVLEMSTTSLIQANNAKRCVIVDDV
APT_MYCPN ALASKTKLPLVLVRKPHKLSGELARETYDLEYRQNSILEMRVDAL---ENCKRCVIVDDL
: .** **. * * : : : **:
APT_CORGL LATGGTLGAARKLIESCDGHVSGYVLAIEVPGLGGRD----NLGD--RPVIVVRDPQ---
APT_MYCTU LATGGTIGATRRLLERGGANVAGAAVVVELAGLSGRA----ALAP--LPVHSLSRL----
APT_STRCO LATGGTAEASLELIRRAGAEVAGLAVLMELGFLGGRARLEPALAG--APLEALLTV----
APT_MYCPU LATGGTTKAIIDLLESQGAKVIKIILLLELTNLNGRS----KFGS--LQVESLVKVSV--
APT_BACSU LATGGTIEATIKLVEELGGVVAGIAFLIELSYLDGRN----KLED--YDILTLMKY----
APT_STAAM LATGGTIEAAIKLVEKLGGIVVGIAFIIELKYLNGIE----KIKD--YDVMSLISYDE--
APT_LISMO LATGGTIEATIKLVEELGGIVAGCAFLIELKELEGHK----KLNG--YDRLILMKL----
APT_FUSNN LATGGTVEATIKLVEELGGVVAGLAFLIELVDLKGRE----RLDK--YPMITLMQY----
APT_STRPN LATGGTVKATIEMIEKLGGVMAGCAFLVELDELNGRE----KIGD--YDYKVLMHY----
APT_STRP1 LATGGTVKATIEMIEKLGGIVAGCAFLIELEGLNGRH----AIRN--YDYKVLMQFPG--
APT_LACLA LATGGTIAATIELVEKMGGIVVGCAFLIELDELKGRE----KIGD--YDYKVLMHY----
APT_HALH5 LATGGTIEATVQMVEQLGGEVVGIAFMIELGYLNGRD----KLVT--YDVFSLTTYE---
APT_CLOAB LATGGTINSVAKLVEALGGEVVAACFVVELTDLNGKD----KLGD--YDTMSLVKYNV--
APT_CLOPE LATGGTIAAVAKLVEQAGGEVAGLAFTIELTELKGRD----KLKG--YEVTSLVDYDV--
APT_THEMA LATGGTAEALIRLVKKLGGEVVSLAFLVELSYLEPRK----RLEG--YDVKTLIVY----
APT_CALS4 LATGGTVYASAKLVESLGGVVDSILFLTELTFLDGRK----KLDG--YDIISLIKF----
APT_BUTFI IATGGTIEAACQLIEELGGEVSKIVFLMELAGLNGRE----KLK---YDVASVCYLRGKI
APT_AGRFC IATGGTAEGAVKLLRQMGAEIVSACFVIDLPDLGGRK----KLEDLGVDVRTLVEFSGH-
APT_RHIME IATGGTAEGAAKLLKQMGADIVAACFIIDLPELGGRK----KLEALGVNVRTLIEFEGH-
APT_RHILO IATGGTAEAAVKLLRQIGADILAACFVIDLPDLGGRA----KLEALGVPVRTLIGFEGH-
APT_BRUME IATGGTAEAAAKLLLQMGAEIVAACFIIDLPDLGGRK----KLEALGLPVRTLVAFEGD-
APT_NEIMA VATGGTMLAGLELIRKLGGEIVEAAAILEFTDLQGGK----NIRASGAPLFTLLQNEGCM
APT_NEIMB IATGGTMLAGLELIRKLGGEIVEAAAILEFTDLQGGK----NIRASGAPLFTLLQNEGCM
APT_PSEAE IATGGTLLAAASLVRRLGARVFEAAAIIDLPELGGST----RLQDAGISTFSLTAFALDE
APT_STUST IATGGTLLAAAQLVRRMRANIHEAAAIIDLPELGGSQ----KLQDIGIPTFTLTAFALSD
APT_RALN1 IATGGTMMAGKRLLERLGATVVEGAAIVDLPELGGSR----LLMDGGLPLFTVCRFDGH-
APT_HELPY LATGGTALASLELIKALQAECIEACFLIGLKELPGIQ----LLEE-RVKTFCLLEC----
APT_HELPJ LATGGTALASLELIKALQAECIEACFLIGLKELPGIQ----LLEE-HVKTFCLLEC----
APT_ECOLI LATGGTIEATVKLIRRLGGEVADAAFIINLFDLGGEQ----RLEKQGITSYSLVPFPGH-
APT_ECO57 LATGGTIEATVKLIRRLGGEVADAAFIINLFDLGGEQ----RLEKQGITSYSLVPFPGH-
APT_SALTI LATGGTIEATVKLIRRLGGKVTDAAFIINLFDLGGEQ----RLEKQGITCYSLMPFPGH-
APT_SALTY LATGGTIEATVKLIRRLGGKVTDAAFIINLFDLGGEQ----RLEKQGITCYSLVPFPGH-
APT_YERPE LATGGTIEATVKLIRRLGGEVVHAAFIINLPELGGEA----RLTQQGIHCYSLVSFDGH-
APT_VIBCH LATGGTIEATTKLIRQLGGEVEHAAFVINLPEIGGDK----RLEGLGLQVYSICEFEGH-
APT_HAEIN LATGGTVEATVKLVQRLGGAVKHAAFVINLPELGGEK----RLNNLGVDCYTLVNFEGH-
APT_PASMU LATGGTVEATVKLVQRLGGDVQDAAFVINLPDLGGEA----RLNALGIDAYTLVDFAGH-
APT_NOSS1 IATGGTASATAKLVQQIGCELVGFGFIIELRDLQGRK----HLPD--VPIISLVEY----
APT_SYNY3 IATGGTAKATAELLTKLGCEVLGFAFIIELAALNGRQ----CLPD--LPIISLVEY----
APT_TREPA IATGGTLNAARTMLRAGGAEVVGFFAVVGLPFLRYHE----LIGD--LPVRTLIEYNQET
APT_BORBU LATGGTLKSSAILLERAGGKVKDIFCFIELCAINGRQ----SLES--YEVNSLVRYN---
APT_UREPA LATGGTVAAIENLVRQAKGIVAGSVYLIRLGFLKGEE----KLSG---KVHALINY----
APT_MYCGE LATAGTVAAIDQLLKQLNGETVGYCFLIELKKLNGKA----KLQPNVVSKILLHY-----
APT_MYCPN LATAGTVAAIDKLIARLGSQTVGYCFLIELQKLHGKA----KLQPNVATKILLHY-----
:**.** . :: . : : :
APT_CORGL ------
APT_MYCTU ------
APT_STRCO ------
APT_MYCPU ------
APT_BACSU ------
APT_STAAM ------
APT_LISMO ------
APT_FUSNN ------
APT_STRPN ------
APT_STRP1 ------
APT_LACLA ------
APT_HALH5 ------
APT_CLOAB ------
APT_CLOPE ------
APT_THEMA ------
APT_CALS4 ------
APT_BUTFI ITDFLG
APT_AGRFC ------
APT_RHIME ------
APT_RHILO ------
APT_BRUME ------
APT_NEIMA KG----
APT_NEIMB KG----
APT_PSEAE R-----
APT_STUST R-----
APT_RALN1 ------
APT_HELPY ------
APT_HELPJ ------
APT_ECOLI ------
APT_ECO57 ------
APT_SALTI ------
APT_SALTY ------
APT_YERPE ------
APT_VIBCH ------
APT_HAEIN ------
APT_PASMU ------
APT_NOSS1 ------
APT_SYNY3 ------
APT_TREPA SN----
APT_BORBU ------
APT_UREPA ------
APT_MYCGE ------
APT_MYCPN ------