CLUSTAL format seed alignment for MF_00042

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Features found in the protein:
The following colors are used to highlight features:
blue indicates SIGNAL, PROPEP, TRANSMEM, DOMAIN, ZN_FING, REPEAT,
DNA_BIND and CA_BIND.
magenta is used to display DISULFID, THIOLEST and THIOETH.
red is used for all other features, such as INIT_MET, ACTIVE SITE,
 METAL,BINDING, NP_BIND, SITE, REGION, etc.
The ID of the sequence used as the template for feature propagation is 
underlined.
A '<' at the beginning of a sequence or '>' at the end indicate that
 the protein is fused with another domain either at the N- or C-terminus.
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RNH_ECOLI       ------MLKQVEIFTDGSCLGNPGPGGYGAILRYRG-------------REKTFSAGYTR
RNH_SALTY       ------MLKQVEIFTDGSCLGNPGPGGYGAILRYRG-------------HEKTFSEGYTL
RNH_HAEIN       ------MPKQIEIFTDGSCLGNPGAGGIGAVLRYKQ-------------HEKTLSKGYFQ
RNH_BUCAP       ------MLKLVKMFSDGSCLGNPGSGGYGTILRYKL-------------HEKILTSGFFL
RNH_HELPY       -------MQEIEIFCDGSSLGNPGPGGYAAILRYKD-------------KEKTISGGEEF
RNH_HELPJ       -------MQEIEIFCDGSSLGNPGPGGYAAILRYKD-------------KEKTISGGENF
RNH_RICPR       ------MDSKVVIYTDGACSGNPGPGGWGALLHFND-------------TSKKIFGYELV
RNH_ZYMMO       MPDSSTQDKIVMIATDGACKGNPGFGGWGALLRYQG-------------HEKAISGSENP
RNH_THET8       --MNPSPRKRVALFTDGACLGNPGPGGWAALLRFHA-------------HEKLLSGGEAC
RNH_SYNY3       ---MASTPNSVTLYTDGACSMNPGPGGYGAVILYGDG------------RREELSAGYKM
RNH_MYCSM       -----MSQDPVIIHTDGGCRPNPGPGGWGAVLRHREH------------VREMFGGEAAV
RNH_TREPA       ----MNAHAALTLYTDGACLGNPGPGGWAFALVPSDVPFLETGQXAPEAAAFTRSGSAYP
RNH_STRCO       ------MRERAVAACDGASKGNPGPAGWAWVVADASE----------N-PVRWEAGPLGK
                               **..  *** .* .  :                            

RNH_ECOLI       TTNNRMELMAAIVALEALKEHCE--VILSTDSQYVRQGITQ-WIHNWKKRGWKTADKKPV
RNH_SALTY       TTNNRMELMAAIVALEALKEHCE--VTLSTDSQYVRQGITQ-WIHNWKKRGWKTAEKKPV
RNH_HAEIN       TTNNRMELRAVIEALNTLKEPCL--ITLYSDSQYMKNGITK-WIFNWKKNNWKASSGKPV
RNH_BUCAP       TTNNRMELMGVICGLESLKESCI--VEITIDSQYVKQGITN-WIATWEKKKWKTTKKKLI
RNH_HELPY       TTNNRMELRALNEALKILKRPCR--ITLYSDSQYVCQAINV-WLANWQKKNFSK-----V
RNH_HELPJ       TTNNRMELRALNEALKILKRPCH--ITLYSDSQYVCQAINV-WLVNWQKKNFAK-----V
RNH_RICPR       TTNNRMEMTAALEALRILKKSSV--VEIYTDSKYLQHGITV-WIHNWIKNNWCKSNNAPV
RNH_ZYMMO       TTNNRMELQAVIEALSCLKKPCQ--IELSTDSKYVMDGLTR-WIHGWQKNGWLTAAKKPV
RNH_THET8       TTNNRMELKAAIEGLKALKEPCE--VDLYTDSHYLKKAFTEGWLEGWRKRGWRTAEGKPV
RNH_SYNY3       TTNNRMEIMGAIAALSHLQEPSQ--VLLYTDSRYMVDAMSKGWAKKWKANGWQRNAKEKA
RNH_MYCSM       TSNNRMELTAPIMALEALTRPVT--VHLYTDSTYVRNGITK-WVLGWERNGWMTAAKQPV
RNH_TREPA       STNNRMELCAVINALQEAHGRAAEAVVVVTDSQYVRKGITQ-WIHTWKHNGWKTAAKQPV
RNH_STRCO       ATNNIAELTALERLLASTDPDVP--LEVRMDSQYAMKAVTT-WLPGWKRNGWKTAAGKPV
                ::**  *: .    *          : :  ** *  ....  *   *  . :        

RNH_ECOLI       KNVDLWQRLDAALGQHQIKWEWVKGHAGHPE--NERCDELARAAAMN-PTLEDTGYQVEV
RNH_SALTY       KNVDLWKRLDAALGQHQIKWVWVKGHAGHPE--NERCDELARAAAMN-PTQEDSGYQAEA
RNH_HAEIN       KNQDLWIALDESIQRHKINWQWVKGHAGHRE--NEICDELAKKGAEN-PTLEDMGYIEE-
RNH_BUCAP       KNLDLWLRINAVIKNHHITWFWVKAHMGHLE--NERCDKIARQSAQS-PSVKDFFYENNF
RNH_HELPY       KNVDLWKEFLEVSKGHSIVAVWIKGHNGHAE--NERCDSLAKLEAQK-RVKTTT------
RNH_HELPJ       KNVDLWKEFVKVSKGHSIVAVWIKGHNGHAE--NERCNSLAKLEAQK-RVKTTT------
RNH_RICPR       KNADLWQKLYSELSKHTIMWKWVKGHASNSG--NIAADKLAVQGRET-AMEILKCLG---
RNH_ZYMMO       KNADLWKQLLALTRQHDIAWKWVKGHAGHPD--NERADQLASDAAIA-LMQQEKA-----
RNH_THET8       KNRDLWEALLLAMAPHRVRFHFVKGHTGHPE--NERVDREARRQAQS-QAKTPCPPRAPT
RNH_SYNY3       KNPDLWETMLTLCEKHQVTFQWVKAHAGNKE--NERCDRLAVAAYQNNPNLVDEGFGKF-
RNH_MYCSM       KNVDLWQRLQAACARHQVEWFWVKGHSGIGD--NELADELATRGLQEAVGLTTSSAGTSL
RNH_TREPA       KNKDLWEALSALADALSVEWRWVKGHAGDPY--NELCDRLATDAARRAAQSTADCP----
RNH_STRCO       ANRELVVRIDELLDGRSVEFRYVPAHQVDGDRLNDFADRAASQAAVVQEAAGSALGSPEP
                 * :*   :        :   :: .*       *   :  *                   

RNH_ECOLI       ------------------------------------------------------------
RNH_SALTY       ------------------------------------------------------------
RNH_HAEIN       ------------------------------------------------------------
RNH_BUCAP       YQNKNL------------------------------------------------------
RNH_HELPY       ------------------------------------------------------------
RNH_HELPJ       ------------------------------------------------------------
RNH_RICPR       ------------------------------------------------------------
RNH_ZYMMO       ------------------------------------------------------------
RNH_THET8       LFHEEA------------------------------------------------------
RNH_SYNY3       ------------------------------------------------------------
RNH_MYCSM       R-----------------------------------------------------------
RNH_TREPA       ------------------------------------------------------------
RNH_STRCO       PPAPDVPAARRAPRRGSSGAARKGGGGSSARTIKAKFPGRCLCGRPYAAGEPIAKNDQGW
                                                                            

RNH_ECOLI       -----------
RNH_SALTY       -----------
RNH_HAEIN       -----------
RNH_BUCAP       -----------
RNH_HELPY       -----------
RNH_HELPJ       -----------
RNH_RICPR       -----------
RNH_ZYMMO       -----------
RNH_THET8       -----------
RNH_SYNY3       -----------
RNH_MYCSM       -----------
RNH_TREPA       -----------
RNH_STRCO       GHPECRTVAAG