CLUSTAL format seed alignment for MF_00052_B
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Features found in the protein:- The following colors are used to highlight features:
- blue indicates SIGNAL, PROPEP, TRANSMEM, DOMAIN, ZN_FING, REPEAT,
DNA_BIND and CA_BIND.
- magenta is used to display DISULFID, THIOLEST and THIOETH.
- red is used for all other features, such as INIT_MET, ACTIVE SITE,
METAL,BINDING, NP_BIND, SITE, REGION, etc.
- The ID of the sequence used as the template for feature propagation is
underlined.
- A '<' at the beginning of a sequence or '>' at the end indicate that
the protein is fused with another domain either at the N- or C-terminus.
_____________________________________________________________________________
RNH2_BORBU ------------------------------------------------------------
RNH2_THEMA ------------------------------------------------------------
RNH2_HALH5 MSKRLSIKEIDALLRQGDASIDETFLAMLKADERKGVQSALKRYERQLEKEKALWMEHEE
RNH2_BACSU --MNTLTVKDIKDRLQEVKDAQDPFIAQCENDPRKSVQTLVEQWLKKQAKEKALKEQWVN
RNH2_AQUAE ------------------------------------------------------------
RNH2_CHLMU -----------------------------------------------MKSIVEQELLFRE
RNH2_CHLTR -----------------------------------------------MKSTVEQAMLFEE
RNH2_CHLPN -----------------------------------------------MNTSISEIQRFLS
RNH2_RICPR ----------------------------------------------------------ME
RNH2_STRCO -----------------------------------------------------MPYEPPT
RNH2_SYNY3 ------------------------------------------------------------
RNH2_BRUME ----------------------------------------MKRSASDSPLLFDLPLAPDF
RNH2_MAGSA --------------------------------------------------------MPDL
RNH2_ECOLI ------------------------------------------------------------
RNH2_VIBCH -------------------------------------------------------MAKKP
RNH2_HAEIN ------------------------------------------------------------
RNH2_NEIMA ------------------------------------------------------------
RNH2_NEIMB ------------------------------------------------------------
RNH2_XYLFA -------------------------------------------------------MVSQF
RNH2_MYCLE ---------------------------------------MATTWPPCRIIRKSGGLRGMW
RNH2_MYCTU ---------------------------------------MTKTWPPRTVIRKSGGLRGMR
RNH2_HELPY ------------------------------------------------------------
RNH2_HELPJ ------------------------------------------------------------
RNH2_CAMJE ----------------------------------------------------------MK
RNH2_BORBU --------------MICGIDEVGRGCIFGPILSAAVVFKKKPS---FIKELDDSKKLKKE
RNH2_THEMA --MGIDELYKKEFGIVAGVDEAGRGCLAGPVVAAAVVLEKE------IEGINDSKQLSPA
RNH2_HALH5 MLAYEKDLWAKGYEHVAGLDEVGRGPLAGPVVTAAVILPKDV----QLPGLTDSKKLAKE
RNH2_BACSU MTSYERLARNKGFRLIAGVDEVGRGPLAGPVVASAVILPEEC----EILGLTDSKKLSEK
RNH2_AQUAE MLNYELELWEKGL-LVAGVDEAGRGPLAGPVVAAAVILPPFT----EPFIKGDSKKLTKK
RNH2_CHLMU KSVFEDQAIKQGYSRIAGVDEAGRGPLAGPVVAGACILPGGK----LFLGIDDSKKLSPK
RNH2_CHLTR KSIFENQAIEQGYSQVAGVDEAGRGPLAGPVVAGACILPRGK----VFLGIDDSKKLTPK
RNH2_CHLPN MIAFEKELVSEDFSVVAGIDEAGRGPLAGPVVASACILPKGK----VFPGVNDSKKLSPK
RNH2_RICPR VNLLQYEKKYHNY-IVAGVDEAGRGSLVGPVVASAVIIDKAD----IIPGIKDSKKLSKN
RNH2_STRCO HTVERSLRATTGAKIIAGVDEVGRGAWAGPVTVCAAITGLRR----PPVGLTDSKLLTIK
RNH2_SYNY3 ---------------MAGVDEVGRGALFGPVVAAAVLVPIEAINQLQALGVKDSKQLSPQ
RNH2_BRUME SQEQQ--LMKRGLKHIAGIDEAGRGPLAGPVVAAAVVLDQNDLP----EGLDDSKRLTAA
RNH2_MAGSA ALEFE--IGG----IVCGIDEVGRGPLAGPVVAAAVILDPARLPKTLLERLDDSKKLSKR
RNH2_ECOLI MIEF----VYPHTQLVAGVDEVGRGPLVGAVVTAAVILDPARP----IAGLNDSKKLSEK
RNH2_VIBCH SIELPPFEIPAGYALIAGVDEVGRGPLVGDVVTAAVILDPNRP----IMGLNDSKKLSEK
RNH2_HAEIN MFEY-----PQGYKLIAGVDEVGRGPLVGAVVTAAVILDPHNP----IEGLADSKKLSEK
RNH2_NEIMA -----------MHILTAGVDEAGRGPLVGSVFAAAVILPETFD----LPGLTDSKKLSEK
RNH2_NEIMB -----------MHILTAGVDEAGRGPLVGSVFAAAVILPETFD----LPGLTDSKKLSEK
RNH2_XYLFA DTQHLP---SSNTALVAGVDEAGRGPLAGPVVVAAVVFDPSQPR---INGLNDSKQLSPA
RNH2_MYCLE TLEYELQ--RSGLGPVAGVDEVGRGACAGPLVVAACVLGPGRLE----ESLDDSKKLSAK
RNH2_MYCTU TLESALH--RGGLGPVAGVDEVGRGACAGPLVVAACVLGPGRIAS--LAALDDSKKLSEQ
RNH2_HELPY ---------MGCVSMTLGIDEAGRGCLAGSLFVAGVACNEKTALEFLKMGLKDSKKLSLK
RNH2_HELPJ ---------MGCVSMTLGIDEAGRGCLAGSLFVAGVVCNEKIALEFLKMGLKDSKKLSPK
RNH2_CAMJE TLFDTKELLNEFDINLIGIDEAGRGALAGPMMMAACKLNKQLD------GLCDSKKLSEK
*:**.*** * : . *** *
RNH2_BORBU KREYLSSLILENS--YYAFAEISNITIEKINIHNASLLAMQTAYENLKLNCSLVLVDGKF
RNH2_THEMA KRERLLDEIMEKA--AVGIGIASPEEIDLYNIFNATKLAMNRALENLSVKPSFVLVDGKG
RNH2_HALH5 TRESFYDRIKEVA-LAWSVAIVPVTVIDEVNIYQATKQGMMSAIDQLSVNPDALLLDAMN
RNH2_BACSU KREEYYELIMKEA-LAVGIGIVEATVIDEINIYEASKMAMVKAIQDLSDTPDYLLVDAMT
RNH2_AQUAE EREEAYEEIKNKA-LAVGTAVVDSAVIDRVNILRATKLAMKRALKDLKYHYDIVITDYVK
RNH2_CHLMU QRRYLYELLLEDPEVTCGVGVVSVERIDEINILEATKEAMVQAIASLRSTPDFLLVDGLF
RNH2_CHLTR QRRYLYELLLEDPEVDCGVGVISVERIDEINILEATKEAMVQAIASLRSTPDFLLVDGLF
RNH2_CHLPN QRAQVRDALMQDPEVCFGIGVISVERIDQVNILEATKEAMLQAISSLPISPDILLVDGLY
RNH2_RICPR KREILYERITSN--YVWSTAIIAHTEIDNINILEATKKACAIAVANLSLKPQKILVDGNM
RNH2_STRCO RRTELEVELRTWV-TSYALGHASPEEIDAMGMTAALRLAAVRALGTLPVRPDAVILDGKH
RNH2_SYNY3 HRSQLAQALPDYV-HSYGISFADVPTINRVNIRQASLLAMERAVQKLPVMPAWVLVDGRD
RNH2_BRUME RREALYEIILTKA-ITVSVASLSARSIDASDIRKAALEAMRRAVIGLTLKPCHALVDGRD
RNH2_MAGSA NREELAELVPATA-I-LGFGEASVEEIDRINILQATFLAMRRAYDALGRECAHALVDG-N
RNH2_ECOLI RRLALYEEIKEKA-LSWSLGRAEPHEIDELNILHATMLAMQRAVAGLHIAPEYVLIDGNR
RNH2_VIBCH KRLALFPEIQVKA-LAWAVGRCSPQEIDELNIFQATMVAMQRAVAGLRIQPDLVLIDGNK
RNH2_HAEIN KRLALAEEIKEKA-RAWALGRAEADEIDEINILQASLLAMTRAVKSLKIQPHFVLIDGNK
RNH2_NEIMA KRDALAEMIKNQA-VAWHVAAAGPEEIASLNILHATMLAMKRAVDGLAVRPEKIFIDGNR
RNH2_NEIMB KRDALAEMIKNQA-VEWHVAAASPEEIASLNILHATMLAMKRAVDGLAVRPEKIFIDGNR
RNH2_XYLFA CRERLYAHIVERA-LAYKVVMIDSTQIDTLNIYQATMLGMRLAVEGVAHVAKSARIDGNR
RNH2_MYCLE GREMLFPLICRYA-LAYHVVFIPSVEVDRHGVQVANIEGMRRAVAGLSVRPGYVLSDGFR
RNH2_MYCTU AREKLFPLICRYA-VAYHVVFIPSAEVDRRGVHVANIEGMRRAVAGLAVRPGYVLSDGFR
RNH2_HELPY KRFFLEYKIKTHGEVGFFVVKKSANEIDSLGLGACLKLAVQEILENGCSLVDEIKIDGNT
RNH2_HELPJ KRFFLEDKIKTHGEVGFFVVKKSANEIDHLGLGACLKLAIEEIVENGCSLANEIKIDGNT
RNH2_CAMJE KREELYEIIIKNSN--YLILAFSSEQIDALGLSTCLKKGLK-LIKKHFKTENNFLYDGNT
* : : .: . . *
RNH2_BORBU VPKIT--AKNVKAIIKGDSIIDEIKAASIIAKVKRDKLMDKYDKIYPLYLLKKNKGYPTK
RNH2_THEMA IELSV--PGT--CLVKGDQKSKLIGAASIVAKVFRDRLMSEFHRMYPQFSFHKHKGYATK
RNH2_HALH5 LPL----SLPQQSLIKGDQKSLSIAASSVLAKVTRDRYMADLANRYPEYGFERHVGYGTE
RNH2_BACSU LPL----DTAQASIIKGDAKSVSIAAGACIAKVTRDRMMSAYAETYPMYGFEKNKGYGTK
RNH2_AQUAE LEG----EN-CMPLVKGDEKSLNCACASIIAKVIRDKIMEIYHKIYPDFNFASNKGYPSK
RNH2_CHLMU LPH----EIPCLKIIKGDSRSVSIAAASIIAKEYRDELMRKLHSEYPEYGFDKHKGYGTV
RNH2_CHLTR LPH----KVPSLKIIKGDARSVSIAAASIIAKEYRDELMRKLHVEYPEYGFDKHKGYGTA
RNH2_CHLPN LPH----DIPCKKIIQGDAKSASIAAASILAKEHRDDLMLQLHRLYPEYGFDRHKGYGTS
RNH2_RICPR KFS----DIRFISIINGDNLSLSIAAASIIAKVTRDRLMLELSAEFPQYLWHKNYGYGTR
RNH2_STRCO DYLGA--PWRVRTVIKGDQSCIAVAAASVLAKVQRDKMMAELGVDHADFGFADNAGYPSP
RNH2_SYNY3 TLPHI--AMAQMAVTGGDRKSLLISAASILAKVWRDTLITRLAERFPGYDLASNKGYGTA
RNH2_BRUME VPPGL--PCPGSALVKGDQRSVSIAAASIVAKVTRDRMMIRAGAAHPPYGLEIHAGYATQ
RNH2_MAGSA RPPGL--PCPVRCVVGGDGISLSIAAASVVAKVRRDAMMADLARAHPEFGWERNAGYGTA
RNH2_ECOLI CPK-L--PMPAMAVVKGDSRVPEISAASILAKVTRDAEMAALDIVFPQYGFAQHKGYPTA
RNH2_VIBCH IPK-L--PMEAQAVVKGDLRVAQISAASIIAKVIRDQEMEALDKQYPQFGFAKHKGYPTA
RNH2_HAEIN IPKDL--AIPAQAVVKGDSLVAEISAASILAKVARDQEMEELDKQYPEYAFAQHKGYPTK
RNH2_NEIMA IPEHL--NIPAEAVVKGDSKIIEISAASVLAKTARDAEMYALAQRHPQYGFDKHKGYGTK
RNH2_NEIMB IPEHL--NIPAEAVVKGDSKIIEISAASVLAKTARDAEMYALAQRHPQYGFDKHKGYGTK
RNH2_XYLFA LPKNL--PCPAEALVGGDARDRTIMAASILAKVTRDRHMVELHLQYPHYGFDKHKGYGTP
RNH2_MYCLE VPG-L--SVPSLPVVGGDAVVACIAAASVLAKVSRDRLMVAMDADYPGYGFAAHKGYCTR
RNH2_MYCTU VPG-L--PMPSLPVIGGDAAAACIAAASVLAKVSRDRVMVALDADHPGYGFAEHKGYSTP
RNH2_HELPY AFGLNKRYPHIQTIIKGDETIAQIAMASVLAKAFKDREMLELHALFKEYGWDKNCGYGTK
RNH2_HELPJ AFGLNKRYPNIQTIIKGDETIAQIAMASVLAKASKDREMLELHALFKEYGWDKNCGYGTK
RNH2_CAMJE NLGIN----GIKTQIKADTSILQVSAASILAKVSKDRVMNFLAKDFPCYEFEKNKAYGTK
.* .: :** :* : . : : .* :
RNH2_BORBU EHKNAIKKYGVLSL-HRKNFKLI-------------------------------------
RNH2_THEMA EHLNEIRKNGVLPI-HRLSFEPVLELLTDDLLREFFEKGLISENRFERILNLLGARKSVV
RNH2_HALH5 EHLAALNAHGITPE-HRRSFRPVQETAATRQTS---------------------------
RNH2_BACSU EHLEALAAYGPTEL-HRKTFAPVQSFR---------------------------------
RNH2_AQUAE THLEKVEKGEYTEI-HRKSFSPLKKKLF--------------------------------
RNH2_CHLMU AHLQALKQFGPCVY-HRKSFSPVKESIREGICQ---------------------------
RNH2_CHLTR AHLQALKHFGPCVY-HRKSFSPVKESIQEGVCQ---------------------------
RNH2_CHLPN LHVEAIRRYGPSPC-HRKSFSPIKQMCAIV------------------------------
RNH2_RICPR EHIEAIKTHGLSSY-HRRSFKSC-------------------------------------
RNH2_STRCO VHKAALEERGPTPH-HRLSWAYLDALPQWRHLKKVRSWVEGSVPEIEGQLGFDF------
RNH2_SYNY3 KHRQGLRQYGATPL-HRPLFCRKIIENPD-------------------------------
RNH2_BRUME KHRAAIESEGPVPGLHRYTFAPIKGRFDC-------------------------------
RNH2_MAGSA EHLDALKRLGPTPH-HRRSFAPVAQYMLF-------------------------------
RNH2_ECOLI FHLEKLAEHGATEH-HRRSFGPVKRALGLAS-----------------------------
RNH2_VIBCH AHFAAIEQHGVIEQ-HRKSFGPVKRALGIE------------------------------
RNH2_HAEIN LHLEKLAELGALPQ-HRRSFAPVKKALEQF------------------------------
RNH2_NEIMA QHLEALEKYGVLPE-HRRDFAPVRNLLAQQALF---------------------------
RNH2_NEIMB QHLEALEKYGVLPE-HRRDFAPVRNLLAQQALF---------------------------
RNH2_XYLFA AHLAALAEHGPCLE-HRRSFAPVRKMLTLEAIHARQSTHQHNENSPTKAAFNMLLERDD-
RNH2_MYCLE AHSLALTQLGPCPE-HRYSFINVRRIVTRSNTRAVAGFTPAPPAEHGECR----------
RNH2_MYCTU AHSRALARLGPCPQ-HRYSFINVRRVASGSNTAEVADGQPDPRDGTAQTGEGRWSKSSHP
RNH2_HELPY QHIEAIIKLGATPF-HRHSFTLKNRILNPKLLEVEQRLI---------------------
RNH2_HELPJ QHIEAINKLGATPF-HRHSFTLKNRILNPKLLEVEQRLV---------------------
RNH2_CAMJE AHKEFIAKFGICKL-HRKSFKLL-------------------------------------
* : ** :
RNH2_BORBU -------------
RNH2_THEMA FRKERTNHNLPLF
RNH2_HALH5 -------------
RNH2_BACSU -------------
RNH2_AQUAE -------------
RNH2_CHLMU -------------
RNH2_CHLTR -------------
RNH2_CHLPN -------------
RNH2_RICPR -------------
RNH2_STRCO -------------
RNH2_SYNY3 -------------
RNH2_BRUME -------------
RNH2_MAGSA -------------
RNH2_ECOLI -------------
RNH2_VIBCH -------------
RNH2_HAEIN -------------
RNH2_NEIMA -------------
RNH2_NEIMB -------------
RNH2_XYLFA -------------
RNH2_MYCLE -------------
RNH2_MYCTU ATMRATGRAQGT-
RNH2_HELPY -------------
RNH2_HELPJ -------------
RNH2_CAMJE -------------