CLUSTAL format seed alignment for MF_00053

_____________________________________________________________________________

Features found in the protein:
The following colors are used to highlight features:
blue indicates SIGNAL, PROPEP, TRANSMEM, DOMAIN, ZN_FING, REPEAT,
DNA_BIND and CA_BIND.
magenta is used to display DISULFID, THIOLEST and THIOETH.
red is used for all other features, such as INIT_MET, ACTIVE SITE,
 METAL,BINDING, NP_BIND, SITE, REGION, etc.
The ID of the sequence used as the template for feature propagation is 
underlined.
A '<' at the beginning of a sequence or '>' at the end indicate that
 the protein is fused with another domain either at the N- or C-terminus.
_____________________________________________________________________________

RNH3_STRPN      ---MASITLTPSEKDIQAFLEHYQTSLAPSK-NPYIRYFLKLPQATVSIYTSGKILLQGE
RNH3_STRR6      ---MASITLTPSEKDIQAFLEHYQTSLAPSK-NPYIRYFLKLPQATVSIYTSGKILLQGE
RNH3_STRA3      ---MNTIVMQADKKLQEKIRTDLAQHHISNN-NPYVVFSAKISGTTVLLYTSGKLVFQGS
RNH3_STRA5      ---MNTIVMQADKKLQEKIRTDLAQHHISNN-NPYVVFSAKISGATVLLYTSGKLVFQGS
RNH3_STRP1      ---MNTLVLKIDAILSKHLKKQLAPYTISSQ-NTYVAFAAKKNGVTVLLYKSGKLVLQGN
RNH3_STRP6      ---MNTLVLKIDAILSKHLKKQLAPYTISSQ-NTYVAFAAKKNGVTVLLYKSGKLVLQGN
RNH3_STRP8      ---MNTLVLKIDAILSKHLKKQLAPYTISSQ-NTYVAFAAKKNGVTVLLYKSGKLVLQGN
RNH3_STRP3      ---MNTLVLKIDAILSKHLKKQLAPYTISSQ-NTYVAFAAKKNGVTVLLYKSGKLVLQGN
RNH3_STRT1      ---MGTIVLKMTAEQISVLQKDLASYATATK-NPYAFFSAKVDGTSVIAYTSGKVTFQGA
RNH3_STRT2      ---MGTIVLKMTAEQISVLQKDLASYATATK-NPYAFFSAKVDGTSVIAYTSGKVTFQGA
RNH3_LACLA      ----MNIVLKLETKERQQLAEKYKSYEQVSK-NPYITFFAKVGKTSISVYTSGKVVFQGN
RNH3_BACAN      --MSNSIVIQTNSTVIEDMKQQYKHSLSPKT-PQGGIFMAKVPSCTITAYKSGKVMFQGG
RNH3_BACHK      --MSNSIVIQTNSTVIEDMKQQYKHSLSPKT-PQGGIFMAKVPSCTITAYKSGKVMFQGG
RNH3_BACC1      --MSNSIVIQTSSTVIEDMKQQYKHSLSPKT-PQGGIFMAKVPSCTITAYKSGKVMFQGG
RNH3_BACCR      --MSNSIVIQTNSTVIEDMKQQYKHSLSPKT-PQGGIFMAKVPSCTITAYKSGKVMFQGG
RNH3_BACLD      --MSHS-VLKVPPSVIERMQSHYGPDITSLS-VQGAVFQAKPQGCTITAYRSGKVLFQGK
RNH3_BACSU      --MSHS-VIKVSLSAIDQMKMTYSGSLTASV-PQGAVFQAKPPGCTITAYQSGKVLFQGK
RNH3_LISIN      --MANT-VIIVDQSTLEKMKQTYLPFSSPKL-PPGAVFAAKKPGVSITGYKSRKVMFQGV
RNH3_LISMO      --MANT-VILVDQPTLEKMKQTYLPFSNPKL-PPGAVFAAKKPGVSITGYKSRKVMFQGV
RNH3_CHLAB      --MSTPFVTTLSPSLHGLLKDRLEEKGFIFTQPQHTIFQARSPSVSCTLYNSGKLVVQGK
RNH3_CHLCV      --MSTPFVTTLSPSLHGLLKDRLEEKGFILTQPQYTIFQARSPSVTCVLYSSGKLVVQGK
RNH3_CHLPN      --MPPPFVVTLTTSAQNNLRDQLKEKNFIFSQPQNTVFQARSNTVTCTLYPSGKLVIQGK
RNH3_CHLMU      MIMPTPFVSQLSPSLFTTLREQLEKKGFVISIPPHTVFQGRSSTVSCTVYQSGKIVVQGK
RNH3_CHLTR      --MPSSFVSQLSPSLFSILREQLEKKGFTISIPPHTVFQGRSPTVSCTVYQSGKIVVQGK
RNH3_PARUW      MSSLPPFVTTLDLKLAEKLLKDLQQQGFSITIPAYTRFSASKKGLTCTLYTSGKLVVQGK
RNH3_AQUAE      -----MPSLKISPSEAEKIQNYLVSSGFRKINAPYTLWALEGNGVKVYYYKTGSLLIQGK
RNH3_UREPA      ---MAIVSVKLTSNQVDKFLILWRPYLVHNN-HNYAKYTFKIDGTLIIIYNTNTCTINTH
                                  :                  :           * : .  .:  

RNH3_STRPN      GAEKYASFFGYQA-------------VEQ----------TSGQNLPLIGTDEVGNGSYFG
RNH3_STRR6      GAEKYASFFGYQA-------------VEQ----------TSGQNLPLIGTDEVGNGSYFG
RNH3_STRA3      NASHIAQKYGYIE-------------QKE-------SCSSETQDIPIIGTDEVGNGSYFG
RNH3_STRA5      NASHIAQKYGFIE-------------QKE-------SCSSESQDIPIIGTDEVGNGSYFG
RNH3_STRP1      GANALAQELNLPV-------------AKTV-----FEASNNSQDIPIIGSDEVGNGSYFG
RNH3_STRP6      GANALAQELNLPV-------------AKTV-----FEASNNSQDIPIIGSDEVGNGSYFG
RNH3_STRP8      GANALAQELNLPV-------------AKTV-----FEASNNSQDIPIIGSDEVGNGSYFG
RNH3_STRP3      GANALAQELNLPV-------------AKTV-----FEASNNSQDIPIIGSDEVGNGSYFG
RNH3_STRT1      KPEILASRFGYQA-------------EPK--------QSPDGQNLALIGSDEVGNGSYFG
RNH3_STRT2      KPEILASRFGYQA-------------EPK--------QSPDGQNLALIGSDEVGNGSYFG
RNH3_LACLA      EAEKLASDFGHIA-------------QVV-----------PQKQTNLIGTDEVGNGSYFG
RNH3_BACAN      RAEAEAARWQTVP--QTPKIAVKKSVDSHR-----YAPPASIGTMSIVGSDEVGTGDFFG
RNH3_BACHK      RAEAEAARWQTVS--QTPKTAVKKSVDSHR-----YAPPASIGTMSIVGSDEVGTGDFFG
RNH3_BACC1      RAEAEAARWQTVS--QTPKTAVKKSVDSHR-----YAPPASIGTMSIVGSDEVGTGDFFG
RNH3_BACCR      RAEAEASRWQTVS--QTPKTAVKKSVDSHR-----YAPPASIGTMSIVGSDEVGTGDFFG
RNH3_BACLD      NAEKEAERWTADAETPAPKKPASKKSIPSV-----YQPPEGIGSMSVIGSDEVGTGDYFG
RNH3_BACSU      NAAAESARWGTAE--PQEKKKTAKKPADPR-----YAPPADIAGMSVIGSDEVGTGDYFG
RNH3_LISIN      NGEAEAKKWVATL--PEAK---TKAPSVSK-----GVLPANFAAKNVIGSDEVGTGDFFG
RNH3_LISMO      NGEAEAKKWVATL--PESK---AKAPSVSK-----GILPANFASKNVIGSDEVGTGDFFG
RNH3_CHLAB      GAQEFIDFFLEPE----------ILLTF-------THNRMEKDLRPRLGVDESGKGDFFG
RNH3_CHLCV      GSKEFIKFFLEPE----------ILLTF-------THNRVEEDLRPRLGVDESGKGDFFG
RNH3_CHLPN      GSEEFIEFFLEPE----------ILHTF-------THARVEQDLRPRLGVDESGKGDFFG
RNH3_CHLMU      GTQEFVEFFLEPE----------ILHSF-------SIQNVQQDLRPRIGVDESGKGDFFG
RNH3_CHLTR      GTQEFVEFFLEPE----------ILQTF-------SSQNVQQDLRSRIGVDESGKGDFFG
RNH3_PARUW      EQAHFIEFYLEPE----------ILESFGF-----SHPTTKIDLTPHIGIDESGKGDFFG
RNH3_AQUAE      NSEKVLKEVLNLL-----------------------------EKKKLPGCDESGKGDIFG
RNH3_UREPA      DINSFLNTFLKREDLTLFNVIKQQVNTKKNNQNVMSQSEIYESAQVIIGSDEVGVGDLFG
                                                                * ** * *. **

RNH3_STRPN      GLAVVAAFVT-PDQHDFLRKLGVGDSKTLTDQKIRQITPILKEKIQHQALLLSPSKYNEV
RNH3_STRR6      GLAVVAAFVT-PDQHDFLRKLGVGDSKTLTDQKIRQIAPILKEKIQHQALLLSPSKYNEV
RNH3_STRA3      GLAVVASFVT-PKDHAYLKKLGVGDSKTLTDQKIKQIAPLLEKAIPHKALLLSPQKYNQV
RNH3_STRA5      GLAVVASFVT-PKDHAYLKKLGVGDSKTLTDQKIKQIAPLLEKAIPHKALLLSPQKYNQV
RNH3_STRP1      GIAVVASFVD-PKDHSFLKKLGVDDSKKLSDKTIQQIAPLLEKQIPHQSLLLSPKKYNEL
RNH3_STRP6      GIAVVASFVD-PKDHSFLKKLGVDDSKKLSDKTIQQIAPLLEKQIPHQSLLLSPKKYNEL
RNH3_STRP8      GIAVVASFVD-PKDHSFLKKLGVDDSKKLSDKTIQQIAPLLEKQIPHQSLLLSPKKYNEL
RNH3_STRP3      GIAVVASFVD-PKDHSFLKKLGVDDSKKLSDKTIQQIAPLLEKQIPHQSLLLSPKKYNEL
RNH3_STRT1      GLAVVASLVT-PADHAFLKSLGVDDSKNLNDSKIRQIAPLLEEKIPHKALLLSPRKYNEV
RNH3_STRT2      GLAVVASLVT-PADHAFLKSLGVDDSKNLNDSKIRQIAPLLEEKIPHKALLLSPRKYNEV
RNH3_LACLA      GLMVTASFVS-EENLNFLKEIGVADSKKLTDEKICQIAPKLIDRIPHVALVVEPAKYNEV
RNH3_BACAN      PMTVVAVYVD-AKQIPLLKELGVKDSKNLNDEQITAIAKQLLHVVPYSSLVLHNEKYNEL
RNH3_BACHK      PMTVVAVYVD-AKQIPLLKELGVKDSKNLNDEQITAIAKQLLHVVPYSSLVLHNEKYNEL
RNH3_BACC1      PMTVVAVYVD-AKQIPLLKELGVKDSKNLNDEQITAIAKQLLHVVPYSSLVLHNEKYNEL
RNH3_BACCR      PMTVVAVYVD-AKQIPLLKELGVKDSKNLNDDQITAIAKQLLHVVPYSSLVLHNEKYNEL
RNH3_BACLD      PITVACVYAD-KAKLPLLKELGVKDSKNLKDPQIVQIARDLIKTVPYSLLVLRNEKYNEM
RNH3_BACSU      PMTVVCAYVD-KTMLPLMKELGVKDSKDLKDPQIIEIARNLIKTIPYSLLVLKNEKYNSM
RNH3_LISIN      PITVCAAYVD-AEMMPLLKELGVKDSKAMKDPEICRIAEKIMPIVPHSVLLCPNPKYNEL
RNH3_LISMO      PITVCAAYVD-AEMMPLLKELGVKDSKAMKDPEICRIAEKIMPLVPHSVLLCPNPKYNEL
RNH3_CHLAB      PLCIAGVYARDAETLKNLYKTKIQDSKMLNDNQILALAKTIRACSTYDVMILYPEKYNEL
RNH3_CHLCV      PLCIAGVYAKDEETLKNLYKTKIQDSKLLNDAQILSLAKTIRASCSCDVMILYPEKYNEL
RNH3_CHLPN      PLCIAAVYASNAEILKKLYENKVQDSKNLKDTKIASLARIIRSLCVCDVIILYPEKYNEL
RNH3_CHLMU      PLCTAGVYAPSIKSIESLYEITICDSKLISDAKIPSLARSIRSLCTCKVITLFPEKYNAL
RNH3_CHLTR      PLCTAGVYASSPQAIEALYKTSICDSKLIPDAKILSLAQNIRSLCACKVITLFPEKYNAL
RNH3_PARUW      PLCIAGVYIQ-ANQFSKLQALGVKDSKTLSDKTIRQLASQIKNLCLYHIVKINPAKYNEI
RNH3_AQUAE      SLVLCCVCIP-EENYLKVSSLNPRDTKRLSDKRVERLYLALKPLVKAYCYEIKPEEYNKL
RNH3_UREPA      GIVVCAVSLK-KSDFKKINHLKIIDSKKLNDQQMQEIYQQIKNQISYTIVSYNPKEYNEL
                 :               :      *:* : *  :  :   :              :** :

RNH3_STRPN      IGD--RYNAVSVKVALHNQAIYLL--LQKGVQPEKIVIDAFTSAKNYDKYLAQEANRFSN
RNH3_STRR6      IGD--RYNAVSVKVALHNQAIYLL--LQKGVQPEKIVIDAFTSAKNYDKYLAQETNRFSN
RNH3_STRA3      VGPNNKHNAVSVKVALHNQAIFLL--LQDGFEPEKIVIDAFTSSKNYQNYLKNEKNQFKQ
RNH3_STRA5      VSPNNKHNAVSVKVALHNQAIFLL--LQDGFEPEKIVIDAFTSSKNYQNYLKNEKNQFKQ
RNH3_STRP1      VGKSKPYNAISIKVALHNQAIFLL--LQKGIQPKQIVIDAFTSQSNYEKHLKKEKNHFPN
RNH3_STRP6      VGKSKPYNAISIKVALHNQAIFLL--LQKGIQPKQIVIDAFTSQSNYEKHLKKEKNHFPN
RNH3_STRP8      VGKSKPYNAISIKVALHNQAIFLL--LQKGIQPKQIVIDAFTSQSNYEKHLKKEKNHFPN
RNH3_STRP3      VGKSKPYNAISIKVALHNQAIFLL--LQKGIQPKQIVIDAFTSQSNYEKHLKKEKNHFPD
RNH3_STRT1      VGDGKAHNAVSVKVALHNQAIFLL--LQSGAKPDKIVIDAFISEKNYQKYLKNERNHFEF
RNH3_STRT2      VGDGKAHNAVSVKVALHNQAIFLL--LQSGAKPDKIVIDAFISEKNYQKYFKNERNHFEF
RNH3_LACLA      IASG--YNAVSIKVALHNQAIYLLE-KQLGHKPENIVIDAFTTEANYKKYVNKEQNHPLT
RNH3_BACAN      FDKG--NNQGKLKALLHNKAITNLLAKIAPTKPEGVLIDQFTQPDTYYKYLAKQKQVQRE
RNH3_BACHK      FDKG--NNQGKLKALLHNKAITNLLTKIAPTKPEGVLIDQFTQPDTYYKYLAKQKQVQRE
RNH3_BACC1      FDKG--NNQGKLKALLHNKAITNLLAKIAPTKPEGVLIDQFTQPDTYYKYLAKQKQVQRE
RNH3_BACCR      FDKG--NNQGKLKALLHNKAITNLLAKMAPTKPEGVLIDQFTQPDTYYKYLAKQKQVQRE
RNH3_BACLD      QEKG--MSQGKMKALLHNQAIGNLLKKLDGTRPEAILIDQFAEPAVYFKHLA-GKTAVKE
RNH3_BACSU      QEKG--MSQGKMKALLHNQAITHLLRKLDGVKPEAILIDQFAEPGVYFNHLK-GRDIVKE
RNH3_LISIN      QKRG--MNQGQMKALLHNRAIENVLKKLAPIKPEAILIDQFAEKNTYYRYLAKEPSIIRE
RNH3_LISMO      QKRG--MNQGQMKALLHNRAIENVLKKLAPIKPEAILIDQFAEKNTYYRYLAKEPSIIRE
RNH3_CHLAB      YAKF--HNLNLLLAWAHATIIDQL--APRPSGEVFAISDQFAS--SESVLLQALRKKSTD
RNH3_CHLCV      YGKF--HNLNILLAWAHATIIDQL--APRPSGEVFAISDQFAS--SESVLLNALRKKNTD
RNH3_CHLPN      YGKF--QNLNTLLAWAHATVINNL--APKPAGDVFAISDQFAA--SEYTLLKALQKKETD
RNH3_CHLMU      YANF--QNLNALLAWTHATIIDDL--APKPTGDVFAISDQFAS--SERVLLQAVRKKRAD
RNH3_CHLTR      YANF--QNLNSLLAWTHATIIDNL--APHPAGAVFAISDQFAS--SERVLLQAVRKKCSD
RNH3_PARUW      YQDF--KNLNHLLAWGHATTIEQL--ILQ-SGCQTVIVDQFA---DEKVVLLALKRKKLD
RNH3_AQUAE      YRKF--RNLNKMMTHFYKLLIERV---KEECGVSEVVVDKYQP------------SNPFG
RNH3_UREPA      IKEY--NNAHILKTILHYKALQSEI-HKHAKYSIFSVVDAFSSLKNWNQYLQKVNFQPYE
                       .   : .  :   :               : * :                   

RNH3_STRPN      PISLEEKAEGKYLSVAVSSVIARDLFLENLENLGRELGYQLPSGAG-TASDKVASQILQA
RNH3_STRR6      PISLEEKAEGKYLAVAVSSVIARDLFLENLENLGRELGYQLPSGAG-TASDKVASQILQA
RNH3_STRA3      TITLEEKAENKYLAVAVSSIIARNLFLENLNKLSDDVGYKLPSGAG-HQSDKVASQLLKA
RNH3_STRA5      TITLEEKAENKYLAVAVSSIIARNLFLENLNKLSDDVGYKLPSGAG-HQSDKVASQLLKA
RNH3_STRP1      PLTFQEKAESHYLAVAVSSIIARNLFLDNLDQLGQDLGYQLPSGAG-SASDKVASQLLAA
RNH3_STRP6      PLTFQEKAESHYLAVAVSSIIARNLFLDNLDQLGQDLGYQLPSGAG-SASDKVASQLLAA
RNH3_STRP8      PLTFQEKAESHYLAVAVSSIIARNLFLDNLDQLGQDLGYQLPSGAG-SASDKVASQLLAA
RNH3_STRP3      PLTFQEKAESHYLAVAVSSIIARNLFLDNLDQLGQDLGYQLPSGAG-SASDKVASQLLAA
RNH3_STRT1      PITLEEKAEGKYLAVAVSSIIARNLFLKNLDKLSQEVGYTLPSGAG-AKSDQVAAKLLQA
RNH3_STRT2      PITLEEKAEGKYLAVAVSSIIARNLFLKNLDKLSQEVGYTLPSGAG-AKSDQVAAKLLQA
RNH3_LACLA      KVTLLTKAEDQFLAVAVSSIISRYLFLENLKKLSKESGFTLPSGAG-NLSDKIAAQIIKS
RNH3_BACAN      NVYFATKGESVHLAVAAASILARYSFVKQFNELSKKAGMPLPKGAG-KQVDIAAAKLIQK
RNH3_BACHK      NVYFATKGESVHLAVAAASILARYSFVKQFNELSKKAGMPLPKGAG-KQVDIAAAKLIQK
RNH3_BACC1      NVYFATKGESVHLAVAAASILARYSFVKQFDELSKKAGMPLPKGAG-KQVDIAAAKLIQK
RNH3_BACCR      NVYFATKGESVHLAVAAASILARYSFVKQFDELSKKAGMPLPKGAG-KQVDIAAAKLIQK
RNH3_BACLD      RTYFSTKAEGIHLSVAAASIIARYSFLMEMDKLSKQAGITLPKGAG-PLVDEAGAKLIKK
RNH3_BACSU      RTYFSTKAEGIHLAVAAASIIARYSFLMEMDKLSRAAGMTLPKGAG-PHVDEAAAKLILK
RNH3_LISIN      DVFFATKAEGLHLSVAAASIIARYKFVQAFDAMSKEVGIPLPKGAG-PHVDVVAAEIIER
RNH3_LISMO      DVFFATKAEGLHLSVAAASIIARYKFVQAFDAMSKEVGIPLPKGAG-PHVDAVAAEIIER
RNH3_CHLAB      ISVIQKVRAEQDIVVAAASILAREAFIHTITKLEQRFSVKLPKGAS-AHVKSAGKTILNT
RNH3_CHLCV      ISVIQKVRAEQDIVVAAASILAREAFITAMTKLEQRFSLKLPKGAS-AQVKSVGKSILNS
RNH3_CHLPN      ITLIQKPRAEQDVVVAAASILARDAFVQSIQKLEEQYQVQLPKGAG-FNVKAAGREIAKQ
RNH3_CHLMU      IELIQRHRAEQDVVVAAASILARDAFLSSMQTLESQYQVRLLKGAS-GKVKQQAKEILRD
RNH3_CHLTR      IELIQRHRAEQDVVVAAASILAREAFLSSIHALESQYQIRLLKGAS-GKVKQRAKEILHN
RNH3_PARUW      VNLTQRHRAEDDLAVAAASILARQAFIDGLEQLSKEIQIPLPKGSS-SATQKAGKEVLRK
RNH3_AQUAE      EDVIFETEAERNLAVAVASIFARYKFLQSLKEVERELGIKIPKGTS-KEVKELAKSLKNP
RNH3_UREPA      PNLLIPKAESIYTSVALASIIARVMFLKMIAIIEEQFNVKIPLGSSNPLVNDVASNIFQK
                              ** :*:::*  *:  :  :       :  *:.    .  .  :   

RNH3_STRPN      YGMQGLSFCAKLHFKNTEKAKKRLER---
RNH3_STRR6      YGMQGLNFCAKLHFKNTEKAKNA------
RNH3_STRA3      YGISSLEHCAKLHFANTKKAQALLK----
RNH3_STRA5      YGISSLEHCAKLHFANTKKAQALLK----
RNH3_STRP1      YGMSSLEYSAKLHFANTHKAQALLTK---
RNH3_STRP6      YGMSSLEYSAKLHFANTHKAQALLTK---
RNH3_STRP8      YGMSSLEYSAKLHFANTHKAQALLTK---
RNH3_STRP3      YGMSSLEYSAKLHFANTHKAQALLTK---
RNH3_STRT1      YGDQALQTTAKYHFANTKKAYQRLK----
RNH3_STRT2      YGDQALQTTAKYHFANTKKAYQRLK----
RNH3_LACLA      QGVDALNQLAKLHFANTQKAIKIAQL---
RNH3_BACAN      LGKERLPEFVKLHFANTEKAFRLLK----
RNH3_BACHK      LGKERLPEFVKLHFANTEKAFRLLK----
RNH3_BACC1      LGKERLPEFVKLHFANTEKAFRLLK----
RNH3_BACCR      LGKERLPEFVKLHFANTEKALRLLR----
RNH3_BACLD      HGEDALRVFTKLHFANTQKAKRIASKR--
RNH3_BACSU      KGASALRTFTKLHFANTQKAQRLADKKRS
RNH3_LISIN      FGLETLAKYTKQHFANTEKALKIAKK---
RNH3_LISMO      FGLETLAKYTKQHFANTEKALKMVKK---
RNH3_CHLAB      QGKEILSLVCKTHFKTFYEICDSTDI---
RNH3_CHLCV      RGKEVLSLICKTHFKTFNEICDSASA---
RNH3_CHLPN      RGKELLAKISKTHFKTFDEICSGK-----
RNH3_CHLMU      KGQPVLEKVCKTHFKTFYEVLGSTS----
RNH3_CHLTR      KGQVVLEKVCKTHFKTFNEVLGSGNQ---
RNH3_PARUW      WGEERLRSICKQHFKTLDAILGKVGK---
RNH3_AQUAE      ------ERFIKLNFNV-------------
RNH3_UREPA      FGLKILKQVAKEHFSNFQQIIKNK-----
                          * :*