CLUSTAL format seed alignment for MF_00461

_____________________________________________________________________________

Features found in the protein:
The following colors are used to highlight features:
blue indicates SIGNAL, PROPEP, TRANSMEM, DOMAIN, ZN_FING, REPEAT,
DNA_BIND and CA_BIND.
magenta is used to display DISULFID, THIOLEST and THIOETH.
red is used for all other features, such as INIT_MET, ACTIVE SITE,
 METAL,BINDING, NP_BIND, SITE, REGION, etc.
The ID of the sequence used as the template for feature propagation is 
underlined.
A '<' at the beginning of a sequence or '>' at the end indicate that
 the protein is fused with another domain either at the N- or C-terminus.
_____________________________________________________________________________

RNFC_HAEIN      --MADVLSRFNSGKLWDFKGGIHPPEMKSQSNSQPLRHLPLGTDFYIPLKQHLGTTGNLL
RNFC_PASMU      ---MDVLTRFNSGKLWDFKGGVHPPERKSQSNQKPIRHAKLVEHFYIPVVQHAGEAGNIL
RSXC_ECOLI      --MLKLFSAFRKNKIWDFNGGIHPPEMKTQSNGTPLRQVPLAQRFVIPLKQHIGAEGELC
RSXC_ECO57      --MLKLFSAFRKNKIWDFNGGIHPPEMKTQSNGTPLRQVPLAQRFVIPLKQHIGAEGELC
RNFC_VIBCH      --MLSLIEQIKSGKLWDFPGGIHPFENKHQSNRQPIINASIPNELVLPLKQHIGKAGDLL
RNFC_RHOCA      MRLPSIATLFHPLQSFSIRGGIHPETHKHLTSECEIETMPMPALIRLPLQQHIGAEAEPI
RNFC_PSEAE      ---------MSALHAFP--GGLCLPANKERSTALPIQQAPLAQRYIVPLGQHIGAPARPC
                         :   : :   **:     *  :.   :    :     :*: ** *  .   

RNFC_HAEIN      IKEGDYVLKGQALTKGDGLRMLPVHAPTSGTIKSIKPYVATHPSGLDEPTIHLQADGLDQ
RNFC_PASMU      VKVGDYVFKGQPLTQGDGLRVLPVHASTSGFIRAIAPYASAHPSGLATLCLHLEADGKDQ
RSXC_ECOLI      VSVGDKVLRGQPLTRGRG-KMLPVHAPTSGTVTAIAPHSTAHPSALAELSVIIDADGEDC
RSXC_ECO57      VSVGDKVLRGQPLTRGRG-KMLPVHAPTSGTVTAIAPHSTAHPSALAELSVIIDADGEDC
RNFC_VIBCH      VKVGDRVLKGQPLTQYTSTFMLPIHAPTSGVISAIEPRTVAHPSGLSELCIVLTPDQQEE
RNFC_RHOCA      VKRDDLVLKGQLIAKARGPLSANIHAPTSGRVIAVGHFVAPHASGLPVPTITIRPDGEDK
RNFC_PSEAE      VEVGQAVLKGQTIALPDGTVSAALHAPTSGTVVAIGAHPYPHASGLPAPAIVIASDGLER
                :. .: *::** ::   .     :**.*** : ::     .*.*.*    : : .*  : 

RNFC_HAEIN      WIERNPIDDFSTLSSEQLIHKIYQAGIAGLGGAVFPTAAKIQ-SAEQKVKLLIINGAECE
RNFC_PASMU      WREQQPLDDFLTQTPEKLIEKLYQAGVAGLGGAVFPTAAKLH-SAEKQVKLLIINGAECE
RSXC_ECOLI      WIPRDGWADYRTRSREELIERIHQFGVAGLGGAGFPTGVKLQ-GGGDKIETLIINAAECE
RSXC_ECO57      WIPRDGWADYRSRRREELIERIHQFGVAGLGGAGFPTGVKLQ-GGGDKIETLIINAAECE
RNFC_VIBCH      WFELQPQPDFQQLTPETLLELIRQAGISGMGGAGFPTAKKLQ-SGLSRTEILIINAAECE
RNFC_RHOCA      WGPHLPRLRPENAAPEEIAAQVAAAGIVGMGGATFPSAVKLNLRAKYDLTTLIINGAECE
RNFC_PSEAE      WTELHPCPDFRAESPLALLERIRAAGIGGLGGAGFPTAAKLAARPAEKIHTLVVNGAECE
                *                :   :   *: *:*** **:. *:          *::*.****

RNFC_HAEIN      PYITCDDRLMRERADEIIKGIRILRYILHPEKVVIAIEDNKPEAISAIR--NALQGANDI
RNFC_PASMU      PYITCDDRLMRDYADEIIEGTRILRYILRPEKVVIAVEDNKPEAVAALR--QVLQGANDI
RSXC_ECOLI      PYITADDRLMQDCAAQVVEGIRILAHILQPREILIGIEDNKPQAISMLR--AVLADSNDI
RSXC_ECO57      PYITADDRLMQDCAAQVVEGIRILAHILQPREILIGIEDNKPQAISMLR--AVLADSHDI
RNFC_VIBCH      PYITADDVLMRQYAHEIIQGIEIVEHILKPKLTIIGIEDNKPEAVAALQ--QAAQD-KPM
RNFC_RHOCA      PYLTCDDRLMRERAEEIADGIGIMARALGVKQVFVAIESNKPQAIEAMTRYNRALG-YTF
RNFC_PSEAE      PYISADDLLMRERATQVLGGIDILVQILCPEEVLVGIEDDKPEAIAAL---GAALGERPY
                **::.** **:: * ::  *  *:   *  .  .:.:*.:**:*:  :       .    

RNFC_HAEIN      SIRVIPTKYPSGATKQLIYLLTGIEVPSGERSSSIGVLMQNVGTMFAIKRAIINDEPLIE
RNFC_PASMU      EIRVIPTKYPSGAAKQLIQILTGMEVPSGQRSSSIGVLMQNVATAFAVKRAIMDDEPLIE
RSXC_ECOLI      SLRVIPTKYPSGGAKQLTYILTGKQVPHGGRSSDIGVLMQNVGTAYAVKRAVIDGEPITE
RSXC_ECO57      SMRVIPTKYPSGGAKQLTYILTGKQVPHGGRSSDIGVLMQNVGTAYAVKRAVIDGEPITE
RNFC_VIBCH      VIRVIPTKYPSGGEKQLIKILTNLEVPKGGIPADIGLMVQNVGSLQAIARAIVHGEPLIR
RNFC_RHOCA      KIHVVPTQYPMGSEKHLVKMITGQETPARALTADLGVVVHNIATAHAVHLAVRYGEPLIA
RNFC_PSEAE      RIVALPTRYPSGGERQLIQLLTGREVPADGLPADIGILCQNVGTLAAVHDAVVLGRPLIS
                 : .:**:** *. ::*  ::*. :.*    .:.:*:: :*:.:  *:  *:  ..*:  

RNFC_HAEIN      RVVTLTGNKIAEKGNYWVRLGTPISQILSDAGYQFDKHFP-IFAGGPMMGLELPNLNAPV
RNFC_PASMU      RVVTLTGDKVRHKGNYWVRLGTPIYQLLQQVDYHYDDRFP-VFMGGPMMGFILPDLQAPV
RSXC_ECOLI      RVVTLTGEAIARPGNVWARLGTPVRHLLNDAGFCPSADQM-VIMGGPLMGFTLPWLDVPV
RSXC_ECO57      RVVTLTGEAIARPGNVWARLGTPVRHLLNDAGFCPSADQM-VIMGGPLMGFTLPWLDVPV
RNFC_VIBCH      RVVTLTGDCFRKPRNVWALLGTPVQALLNEFGYKADKKLPRLIMGGPMMGFTLPHAQVPI
RNFC_RHOCA      RTVTVSGHGIRRPANLRVLIGTPVSEIIAHCGGFTEEPDR-LLLGGPMMGMPIQNPRVPV
RNFC_PSEAE      RITTLAGGALERPMNVEALIGTPVHELLAFAGLAEGRLER-VLMGGPMMGFALPDLSVPL
                * .*::*  . .  *  . :***:  ::   .         :: ***:**: :    .*:

RNFC_HAEIN      TKLVNCLLAPDYLEYAEPEAEQACIRCSSCSDACPVNLMPQQLYWFARSEDHKKSEEYAL
RNFC_PASMU      TKMTNCLLAPDHFEYAPPAPEQSCIRCSACSDACPVSLMPQQLYWFARSEDHEKSEEYAL
RSXC_ECOLI      VKITNCLLAPSANELGEPQEEQSCIRCSACADACPADLLPQQLYWFSKGQQHDKATTHNI
RSXC_ECO57      VKITNCLLAPSANELGEPQEEQSCIRCSACADACPADLLPQQLYWFSKGQQHDKATTHNI
RNFC_VIBCH      TKTANCILAPTRNELTSSDNEMACIRCGQCAEACPVSLLPQQLQWHAKAEEFDKCEELDL
RNFC_RHOCA      VKGTNGILALTAAETPE-AKTMPCIRCGRCVQGCPVGLTPFELNARIHAGDLEGAAKVGL
RNFC_PSEAE      IKTCNCLLAGDATELPEPVPAMPCIRCGDCAQVCPVSLLPQQLHFFALGDEHEQLLAHNL
                 *  * :**    *        .****. * : **..* * :*     . : .      :

RNFC_HAEIN      KDCIECGICAYVCPSHIPLIQYFRQEKAKIWQIKEKQKKSDEAKIRFEAKQARMEREEQE
RNFC_PASMU      KDCIECGLCAYVCPSHIPLIQYFRQEKAKIWEIQQKAKQAEEAKQRFEARQARLAREEQE
RSXC_ECOLI      ADCIECGACAWVCPSNIPLVQYFRQEKAEIAAIRQEEKRAAEAKARFEARQARLEREKAA
RSXC_ECO57      ADCIECGACAWVCPSNIPLVQYFRQEKAEIAAIRQEEKRAAEAKARFEARLARLEREKAA
RNFC_VIBCH      KDCIECGACAYVCPSEIPLVQYYRQAKAEIRTRSLEAEAAERAKARFEEKKARMERDKAE
RNFC_RHOCA      MDCLACGCCSYNCPANLPLVQSFQFAKGKLSE-----------------RQSRKHQQEE-
RNFC_PSEAE      FDCIECGACAYVCPSSIPLVQYYRASKAEIREQRQKLLKAEQSRERFEQRQARLRRDEER
                 **: ** *:: **: :**:* ::  *.::                   : :*  :::  

RNFC_HAEIN      RKARSQRAAQARREELAQTKGEDPVKAALERLKAKKANE--TESTQIKTLTSEKGEVLPD
RNFC_PASMU      RKARAQKAMEARRQEMKTAQGIDPVQAALERLKAKKTDNDSSAKVEIKTIVTEKGDILPD
RSXC_ECOLI      RLERHKSAAVQ--PAAKDK---DAIAAALARVKEKQAQA-------TQPIVIKAGE-RPD
RSXC_ECO57      RLERHKSAAVQ--PAAKDK---DAIAAALARVKEKQAQA-------TQPIVIKAGE-RPD
RNFC_VIBCH      RENRFKQAAEDRRKEMQQQGGSDAIAAAIERVKAQKAQ-----------LEPTDNSVKPA
RNFC_RHOCA      -----------------------TKRLAAARKAREE------------------------
RNFC_PSEAE      R-------AAER--AQR------AEKAALARAAQAERE-----------------EAAPA
                                       .   *  *    :                        

RNFC_HAEIN      NTDLMAQRKARRLARQQAASQVENQEQQTQPTNA---KKAAVAAALARAKAKKLAQANST
RNFC_PASMU      NSDIMAQRKARRLARQQQTQNTDVSQVETNEENKSTDSKSAVAAAIARAKAKKAAQQGSA
RSXC_ECOLI      NSAIIAAREARKAQARAKQAELQQTNDAATVADP---RKTAVEAAIARAKARKLEQQQAN
RSXC_ECO57      NSAIIAAREARKAQARAKQAELQQTNDAATVTDP---RKTAVEAAIARAKARKLEQQQAN
RNFC_VIBCH      IAAAIARAKAKQAEAAQSGASEPDNSEMAKLREE---RK---RQARERKAQKGEVTEAST
RNFC_RHOCA      ----------------------------------------------AIAEAKKQMM----
RNFC_PSEAE      TAVDPVQAAIERARARKQAGSGSERLKRLKIEAS--------MARVALKKAEKQLLSHDT
                                                                   .        

RNFC_HAEIN      SE--AISNS--------------------------QTAENQVEKT--KSAVEKTQENS--
RNFC_PASMU      LEKDEISSSDTLSVGNDTEPVAEDPRKAAIAAAIARAKAKKAAQQ--GSAVEKDEISSSN
RSXC_ECOLI      AEPEQQVDP----------------RKAAVEAAIARAKARKLEQQ--QANAEPEEQ----
RSXC_ECO57      AEPEQQVDP----------------RKAAVEAAIARAKARKLEQQ--QANAEPEQQ----
RNFC_VIBCH      SDGADDKKS-------------------AVAAAIARAKARKAEQQETESAAQPAQATPS-
RNFC_RHOCA      ----------------------------------LKRKAEMAAKKKAEEAAAAAAM----
RNFC_PSEAE      PEQHGLVAE-------------------------LRAAAEAADKALADAEASLPRD----
                                                   :   .   :      .         

RNFC_HAEIN      ----------TALDPKKAAVAAAIARAKAKKLAQTNSTSEAISNSQTAENEVEKTKSAVE
RNFC_PASMU      TLSVGNDTEPVADDPRKVAIAAAIARAKAKKAAQQGSAVE--------QDEISSSDTLSI
RSXC_ECOLI      ----------VD--PRKAAVEAAIARAKARKLEQQQANAE----------PEQQ------
RSXC_ECO57      ----------VD--PRKAAVEAAIARAKARKLEQQQANAE----------PEEP------
RNFC_VIBCH      --S-------DDADPKKAAVAAAIARAKARKAEQQETEST--------AQPAQATPS---
RNFC_RHOCA      ----------PP----PATATAIQGEATP-------------------------------
RNFC_PSEAE      ----------LP----SAPPAALDDEAELKKAKAQAAMARAQLKRSEKAFGEAPGAEQRA
                                 ..  *   .*                                 

RNFC_HAEIN      KTEENSTALDAKKAAIAAAIARAKAKKLAQANSASEAISNSQTAENEVEKTKSAVEKTQQ
RNFC_PASMU      GNEAEPVADDPRKAAIAAAIARAKAKKAAQQRSAVE--------QDEISSSDTLSVGNET
RSXC_ECOLI      --------VDPRKAAVEAAIARAKARKREQQPANAE---------PEE--------Q---
RSXC_ECO57      --------VDPRKAAVEAAITRAKARKLEQQQANAE---------PEE--------Q---
RNFC_VIBCH      ---SDD--ADPKKAAVAAAIARAKARKAEKQETESA---------AQPTQATPSSDD---
RNFC_RHOCA      ------------------------------------------------------------
RNFC_PSEAE      TLDELRAEVERCEATLARLERHAPKPAAPGDDGQAALKRAKIALVGKRAALKKAEQAGVM
                                                                            

RNFC_HAEIN      NSTALDPKKAAVAAAIARAKAKKLAQANSTSEAISNSQTAENEVEKTKSAVEKTQENSTA
RNFC_PASMU      ESVAEDPRKAAIAAAIARAKAKKAAQQRSAVE--------QDEISSSDTLSVGNETESVA
RSXC_ECOLI      ----VDPRKAAVEAAIARAKARKLEQQQANAV-------PEEQVD---------------
RSXC_ECO57      ----VDPRKAAVAAAIARAKARKLEQQQANAE-------PEEQVD---------------
RNFC_VIBCH      ----ADPKKAAVAAAIARAKARKAEQQETESAA------QPTQATPS------SD----D
RNFC_RHOCA      ------------------------------------------------------------
RNFC_PSEAE      DSELERLRGELQAAERDLHAAEDACGKPAPELVRIDKRPVDPRIRELKTELAYARAALKK
                                                                            

RNFC_HAEIN      LDPKKAAVAAAIARAKAKKLAKTQATLENNQE--
RNFC_PASMU      EDPRKAAIAAAIARAKAKKAAKANNHDA------
RSXC_ECOLI      --PRKAAVAAAIARAQAKKAAQQKVVNED-----
RSXC_ECO57      --PRKAAVAAAIARVQAKKAVQQKVVNED-----
RNFC_VIBCH      ADPKKAAVAAAIARAKARKAAQQSSSNLNAEEKD
RNFC_RHOCA      ----------------------------------
RNFC_PSEAE      LERLANADAAALAAARARLSAAERALTEHGTE--