CLUSTAL format seed alignment for MF_01046
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Features found in the protein:
- The following colors are used to highlight features:
- blue indicates SIGNAL, PROPEP, TRANSMEM, DOMAIN, ZN_FING, REPEAT,
DNA_BIND and CA_BIND.
- magenta is used to display DISULFID, THIOLEST and THIOETH.
- red is used for all other features, such as INIT_MET, ACTIVE SITE,
METAL,BINDING, NP_BIND, SITE, REGION, etc.
- The ID of the sequence used as the template for feature propagation is
underlined.
- A '<' at the beginning of a sequence or '>' at the end indicate that
the protein is fused with another domain either at the N- or C-terminus.
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HCHA_ECOLI ---MTVQTSKNPQVDIAEDNAFFPSEYSLSQYTSPVSDLDGVDYPKPYR-GKHKILVIAA
HCHA_ECO57 ---MTVQTSKNPQVDIAEDNAFFPSEYSLSQYTSPVSDLDGVDYPKPYR-GKHKILVIAA
HCHA_ECOL6 ---MTVQTSKNPQVDIAEDNAFFPSEYSLSQYTSPVSDLDGVDYPKPYR-GKHKILVIAA
HCHA_SHIFL ---MTVQTSKNPQVDIAEDNAFFPSEYSLSQYTSPVSDLDGVDYPKPYR-GKHKILVIAA
HCHA_STAAM MSQDVNELSKQPTPDKAEDNAFFPSPYSLSQYTAPKTDFDGVEHKGAYKDGKWKVLMIAA
HCHA_STAAW MSQDVNELSKQPTPDKAEDNAFFPSPYSLSQYTAPKTDFDGVEHKGAYKDGKWKVLMIAA
HCHA_PSEAE MSNE-RDTSRTPTPDPAEHNAFFPSPYSLSQYTSAKTDFDGADYPTPYKGGK-KVLMIGT
: *: * * **.****** *******:. :*:**.:: .*: ** *:*:*.:
HCHA_ECOLI DERYLPTDNGKLFSTGNHPIETLLPLYHLHAAGFEFEVATISGLMTKFEYWAMPHKDEKV
HCHA_ECO57 DERYLPTDNGKLFSTGNHPIETLLPLYHLHAAGFEFEVATISGLMTKFEYWAMPQKDEKV
HCHA_ECOL6 DERYLPTDNGKLFSTGNHPIETLLPLYHLHAAGFEFEVATISGLMTKFEYWAMPHKDEKV
HCHA_SHIFL DERYLPTDNGKLFSTGNHPIETLLPLYHLHAAGFEFEVATISGLMTKFEYWAMPHKDEKV
HCHA_STAAM EERYVLLENGKMFSTGNHPVEMLLPLHHLMEAGFDVDVATLSGYPVKLELWAMPTEDEAV
HCHA_STAAW EERYVLLENGKMFSTGNHPVEMLLPLHHLMEAGFDVDVATLSGYPVKLELWAMPTEDEAV
HCHA_PSEAE DERYILMQNASMFSTGNHPVEMLLPMYHLDKAGFEFDVATLSGNPVKLEMWAMPGEDEAV
:***: :*..:*******:* ***::** ***:.:***:** .*:* **** :** *
HCHA_ECOLI MPFFEQHKSLFRNPKKLADVVAS-LNADSEYAAIFVPGGHGALIGLPESQDVAAALQWAI
HCHA_ECO57 MPFFEQHKSLFRNPKKLADVVAS-LNADSEYAAIFVPGGHGALIGLPESQDVAAALQWAI
HCHA_ECOL6 MPFFEQHKSLFRNPKKLADVVAS-LNADSEYAAIFVPGGHGALIGLPESQDVAAALQWAI
HCHA_SHIFL MPFFEQHKSLFRNPKKLADVVAS-LNADSEYAAIFVPGGHGALIGLPESQDVAAALQWAI
HCHA_STAAM ISTYNKLKEKLKQPKKLADVIKNELGPDSDYLSVFIPGGHAAVVGISESEDVQQTLDWAL
HCHA_STAAW ISTYNKLKEKLKQPKKLADVIKNELGPDSDYLSVFIPGGHAAVVGISESEDVQQTLDWAL
HCHA_PSEAE KSIYAKYLPKLKAPRKLADLLEQAVADDSPYAAVFVPGGHGVLAGIPHSREVKRLLNAFL
. : : :: *:****:: . : ** * ::*:****..: *:..*.:* *: :
HCHA_ECOLI KNDRFVISLCHGPAAFLALRHGD----NPLNGYSICAFPDAADKQTP-EIGYMPGHLTWY
HCHA_ECO57 KNDRFVISLCHGPAAFLALRHGD----NPLNGYSICAFPDAADKQTP-EIGYMPGHLTWY
HCHA_ECOL6 KNDRFVISLCHGPAAFLALRHSD----NPLNGYSICAFPDAADKQTP-DIGYMPGHLTWY
HCHA_SHIFL KNDRFVISLCHGPAAFLALRHSD----NPLNGYSICAFPDAADKQTP-DIGYMPGHLTWY
HCHA_STAAM DNDRFIVTLCHGPAALLSAGLNR--EKSPLEGYSVCVFPDSLDEGANIEIGYLPGRLKWL
HCHA_STAAW DNDRFIVTLCHGPAALLSAGLNR--EKSTLEGYSVCVFPDSLDEGANIEIGYLPGRLKWL
HCHA_PSEAE AKDRYIITLCHGPACLLAPAVEEKPEDYPFKGYEICVFPDALDTGANLEIGYMPGPLPWL
:**::::******.:*: .::**.:*.***: * : :***:** * *
HCHA_ECOLI FGEELKKMGMNIINDDITGRVHKDRKLLTGDSPFAANALGKLAAQEMLAAYAG-
HCHA_ECO57 FGEELKKMGMNIINDDITGRVHKDRKLLTGDSPFAANALGKLAAQEMLAAYAG-
HCHA_ECOL6 FGEELKKMGMNIINDDITGRVHKDRKLLTGDSPFAANALGKLAAQEMLAAYAS-
HCHA_SHIFL FGEELKKMGMNIINDDITGRVHKDRKRLTGDSPFAANALGKLAAQEMLAAYAS-
HCHA_STAAM VADLLTKQGLKVVNDDMTGRTLKDRKLLTGDSPLASNELGKLAVNEMLNAIQNK
HCHA_STAAW VADLLTKQGLKVVNDDMTGRTLKDRKLLTGDSPLASNELGKLAVNEMLNAIQNK
HCHA_PSEAE VGENLQKLGVKILNKGITGQVHRDRKLLTGDSPLASNNLGKLAAKTLLEAFAR-
..: * * *::::*..:**:. :*** ******:*:* *****.: :* *