CLUSTAL format seed alignment for MF_01533

_____________________________________________________________________________

Features found in the protein:
The following colors are used to highlight features:
blue indicates SIGNAL, PROPEP, TRANSMEM, DOMAIN, ZN_FING, REPEAT,
DNA_BIND and CA_BIND.
magenta is used to display DISULFID, THIOLEST and THIOETH.
red is used for all other features, such as INIT_MET, ACTIVE SITE,
 METAL,BINDING, NP_BIND, SITE, REGION, etc.
The ID of the sequence used as the template for feature propagation is 
underlined.
A '<' at the beginning of a sequence or '>' at the end indicate that
 the protein is fused with another domain either at the N- or C-terminus.
_____________________________________________________________________________

RHAR_ECOLI      ---MAHQLKLLKDDFFASDQQAVAVADRYPQDVFAEHTHDFCELVIVWRGNGLHVLNDRP
RHAR_ECOHS      ---MAHQLKLLKDDFFASDQQAVAVADRYPQDVFAEHTHDFCELVIVWRGNGLHVLNDRP
RHAR_ECOUT      ---MAHQLKLLKDDFFASDQQAVAVADRYPQDVFAEHTHDFCELVIVWRGNGLHVLNDRP
RHAR_ECOK1      ---MAHQLKLLKDDFFASDQQAVAVADRYPQDVFAEHTHDFCELVIVWRGNGLHVLNDRP
RHAR_ECOL5      ---MAHQLKLLKDDFFASDQQAVAVADRYPQDVFAEHTHDFCELVIVWRGNGLHVLNDRP
RHAR_SHIBS      ---MAHQLKLLKDDFFASDQQAVAVADRYPQDVFAEHTHDFCELVIVWRGNGLHVLNDRP
RHAR_ECOL6      ---MAHQLKLLKDDFFASDQQAVAVADRYPQDVFAEHTHDFCELVIVWRGNGLHVLNDRP
RHAR_ECO24      ---MAHQLKLLKDDFFASDQQAVAVADRYPQDVFAEHTHDFCELVIVWRGNGLHVLNDRP
RHAR_SHIFL      ---MAHQLKLLKDDFFASDQQAVAVADRYPQDVFAEHTHDFCELVIVWRGNGLHVLNDRP
RHAR_SHIF8      ---MAHQLKLLKDDFFASDQQAVAVADRYPQDVFAEHTHDFCELVIVWRGNGLHVLNDRP
RHAR_ECO57      ---MAHQLKLLKDDFFASDQQAVAVADRYPQDVFAEHTHDFCELVIVWRGNGLHVLNDRP
RHAR_SHIDS      ---MVHQLKLLKDDFFASDQQAVAVADCYPQDVFAEHTHDFCELVIVWRGNGLHVLNDRP
RHAR_SALCH      ---MANQLILLKKDFFTDEQQAVTVADRYPQDIFAEHTHEFCELVMVWRGNGLHVLNERP
RHAR_SALTI      ---MANQLILLKKDFFTDEQQAVTVADRYPQDVFAEHTHEFCELVMVWRGNGLHVLNERP
RHAR_SALPA      ---MANQLILLKKDFFTDEQQAVTVADRYPQDVFAEHTHEFCELVMVWRGNGLHVLNERP
RHAR_SALTY      ---MANQLILLKKDFFTDEQQAVTVADRYPQDVFAEHTHEFCELVMVWRGNGLHVLNERP
RHAR_CROS8      ---MASQLVLRKADFFATPTQPVVVADRYPQNVFAEHTHEFCELVLVWRGNGLHVLNDRP
RHAR_YERPE      ---MRAPLLLESRDYLLSEQMPVAVTNRYPQETFVEHTHQFCEIVIVWRGNGLHVLNDHP
RHAR_YERPA      ---MRAPLLLESRDYLLSEQMPVAVTNRYPQETFVEHTHQFCEIVIVWRGNGLHVLNDHP
RHAR_YERPN      ---MRAPLLLESRDYLLSEQMPVAVTNRYPQETFVEHTHQFCEIVIVWRGNGLHVLNDHP
RHAR_YERPS      ---MRAPLLLESRDYLLSEQMPVAVTNRYPQETFVEHTHQFCEIVIVWRGNGLHVLNDHP
RHAR_PECAS      MATAIRGLKLQTEDYFLTDKNAVMVAERHPQPVFPLHHHDFDELVIVWRGNGLHLWNDVP
RHAR_MANSM      ---MTDILQLSHHSYFISEESPITVERRHYQPPFPLHRHDFNEIVIISAGNGIHFWNDEI
                       * *   .::     .: *   : *  *  * *:* *:*::  ***:*. *:  

RHAR_ECOLI      YRITRGDLFYIHADDKHSYASVNDLVLQNIIYCPERLKLNLDWQGAIPGFNASAGQPHWR
RHAR_ECOHS      YRITRGDLFYIHADDKHSYASVNDLVLQNIIYCPERLKLNLDWQGAIPGFNASAGQPHWR
RHAR_ECOUT      YRITRGDLFYIHADDKHSYASVNDLVLQNIIYCPERLKLNLDWQGAIPGFNASAGQPHWR
RHAR_ECOK1      YRITRGDLFYIHADDKHSYASVNDLVLQNIIYCPERLKLNLDWQGAIPGFNASAGQPHWR
RHAR_ECOL5      YRITRGDLFYIHADDKHSYASVNDLVLQNIIYCPERLKLNLDWQGAIPGFSASAGQPHWR
RHAR_SHIBS      YRITRGDLFYIHADDKHSYASVNDLVLQNIIYCPERLKLNLDWQGAIPGFSASAGQPHWR
RHAR_ECOL6      YRITRGDLFYIHADDKHSYASVNDLVLQNIIYCPERLKLNLDWQGAIPGFSASAGQPHWR
RHAR_ECO24      YRITRGDLFYIHADDKHSYASVNDLVLQNIIYCPERLKLNLDWQGAIPGFSASAGQPHWR
RHAR_SHIFL      YRITRGDLFYIHADDKHSYASVNDLVLQNIIYCPERLKLNLDWQGAIPGFSASAGQPHWR
RHAR_SHIF8      YRITRGDLFYIHADDKHSYASVNDLVLQNIIYCPERLKLNLDWQGAIPGFSASAGQPHWR
RHAR_ECO57      YRITRGDLFYIHADDKHSYASVNDLVLQNIIYCPERLKLNLDWQGAIPGFSASAGQPHWR
RHAR_SHIDS      YRITRGDLFYIHADDKHSYASVNDLVLQNIIYCPERLKLNLDWQGAIPGFSVSAGQPHWR
RHAR_SALCH      YRITRGDLFYIRAEDQHSYTSVNDLVLQNIIYCPERLKLNVNWQAMIPGFQGAQWHPHWR
RHAR_SALTI      YRITRGDLFYIRAEDKHSYTSVNDLVLQNIIYCPERLKLNVNWQAMIPGFQGAQWHPHWR
RHAR_SALPA      YRITRGDLFYIRAEDKHSYTSVNDLVLQNIIYCPERLKLNVNWQAMIPGFQGAQWHPHWR
RHAR_SALTY      YRITRGDLFYIRAEDKHSYTSVNDLVLQNIIYCPERLKLNVNWQAMIPGFQGAQWHPHWR
RHAR_CROS8      YRITCGDLFYIRAEDRHSYQSVNDLVLHNIIYCPERLQLNVNWRDLLENPRGVNGDPRWR
RHAR_YERPE      YRITCGDVFYIQAADHHSYESVHDLVLDNIIYCPERLHLNAQWHKLLPPLGPEQNQGYWR
RHAR_YERPA      YRITCGDVFYIQAADHHSYESVHDLVLDNIIYCPERLHLNAQWHKLLPPLGPEQNQGYWR
RHAR_YERPN      YRITCGDVFYIQAADHHSYESVHDLVLDNIIYCPERLHLNAQWHKLLPPLGPEQNQGYWR
RHAR_YERPS      YRITCGDVFYIQAADHHSYESVHDLVLDNIIYCPERLHLNAQWHKLLPPLGPEQNQGYWR
RHAR_PECAS      YRITRGDMFYVSAHDRHSYESVHELELDNILYIRNRLTLSADWQTLLPSGELPQSQRHWC
RHAR_MANSM      HPITTGNVLYIESGDKHKYGEVDKLKLDNILYRPEKLSLFPIMKDYIPHNNEKKS---LR
                : ** *:::*: : *:*.* .*..* *.**:*  ::* *    :  :             

RHAR_ECOLI      LGSMGMAQARQVIGQLEHESSQHVPFANEMAELLFGQLVMLLNRHRYTSDSLPPTSSETL
RHAR_ECOHS      LGSMGMAQARQVIGQLEHESSQHVPFANEMAELLFGQLVMLLNRHRYTSDSLPPTSSETL
RHAR_ECOUT      LGSVGMAQARQVIGQLEHESSQHVPFANEMAELLFGQLVMLLNRHRYTSDSLPPTSSETL
RHAR_ECOK1      LGSVGMAQARQVIGQLEHESSQHVPFANEMAELLFGQLVMLLNRHRYTSDSLPPTSSETL
RHAR_ECOL5      LGSVGMAQARQVIGQLEHESSQHVSFANEMAELLFGQLVMLLNRHRYTSDSLPPTSSETL
RHAR_SHIBS      LGSVGMAQARQVIGQLEHESSQHVSFANEMAELLFGQLVMLLNRHRYTSDSLPPTSSETL
RHAR_ECOL6      LGSVGMAQARQVIGQLEHESSQHVSFANEMAELLFGQLVMLLNRHRYTSDSLPPTSSETL
RHAR_ECO24      LGSVGMAQARQVIGQLEHESSQHVSFANEMAELLFGQLVMLLNRHRYTSDSLPPTSSETL
RHAR_SHIFL      LGSVGMAQARQVIGQLEHESSQHVPFANEMAELLFGQLVMLLNRHRYTSDSLPPTSSETL
RHAR_SHIF8      LGSVGMAQARQVIGQLEHESSQHVPFANEMAELLFGQLVMLLNRHRYTSDSLPPTSSETL
RHAR_ECO57      LGSMGMAQARQVIGQLEHESSQHVPFANEMAELLFGQLVMLLNRHRYTSDSLPPTSSETL
RHAR_SHIDS      LGSMGMAQARQIIGQLEHESSQHVPFANEMAELLFGQLVMLLNRHRYTSDSLPPTSSETL
RHAR_SALCH      LGSMGMNQARQVINQLEHESNGRDPLANEMAELLFGQLVMTLKRHRYATDDLPATSRETL
RHAR_SALTI      LGSMGMNQARQVINQLEHESNGRDPLANEMAELLFGQLVMTLKRHRYATDDLPATSRETL
RHAR_SALPA      LGSMGMNQARQVINQLEHESNGRDPLANEMAELLFGQLVMTLKRHRYATDDLPATSRETL
RHAR_SALTY      LGSMGMNQARQVINQLEHESNGRDPLANEMAELLFGQLVMTLKRHRYATDDLPATSRETL
RHAR_CROS8      LSSQGMVQARQVIDQLEHESPKQDALSHCLAESLFLQLAITLRRHRYQPSGGTGPGEGET
RHAR_YERPE      LTTQGMAQARPIIQQLAQESRKTDSWSIQLTEVLLLQLAIVLKRHRYRAEQAHLLPDGEQ
RHAR_YERPA      LTTQGMAQARPIIQQLAQESRKTDSWSIQLTEVLLLQLAIVLKRHRYRAEQAHLLPDGEQ
RHAR_YERPN      LTTQGMAQARPIIQQLAQESRKTDSWSIQLTEVLLLQLAIVLKRHRYRAEQAHLLPDGEQ
RHAR_YERPS      LTTQGMAQARPIIQQLAQESRKTDSWSIQLTEVLLLQLAIVLKRHRYRAEHAHLLPDGEQ
RHAR_PECAS      LGSEGMDTIREKVDALTQECMKSDALSLQLSEALLLQIALLAARYRHSPDS-PQLADAHQ
RHAR_MANSM      INQETLVQLQSLISQLEIESKKTNKSSMHLSEAIFLQILILICRTQQ--QENKAYSDISK
                :    :   :  :  *  *.      :  ::* :: *: :   * :   .          

RHAR_ECOLI      LDKLITRLAASLKSPFALDKFCDEASCSERVLRQQFRQQTGMTINQYLRQVRVCHAQYLL
RHAR_ECOHS      LDKLITRLAASLKSPFALDKFCDEASCSERVLRQQFRQQTGMTINQYLRQVRVCHAQYLL
RHAR_ECOUT      LDKLITRLAASLKSPFALDKFCDEASCSERVLRQQFRQQTGMTINQYLRQVRVCHAQYLL
RHAR_ECOK1      LDKLITRLAASLKSPFALDKFCDEASCSERVLRQQFRQQTGMTINQYLRQVRVCHAQYLL
RHAR_ECOL5      LDKLITRLAASLKSPFALDKFCDEASCSERVLRQQFRQQTGMTINQYLRQVRVCHAQYLL
RHAR_SHIBS      LDKLITRLAASLKSPFALDKFCDEASCSERVLRQQFRQQTGMTINQYLRQVRVCHAQYLL
RHAR_ECOL6      LDKLITRLAASLKSPFALDKFCDEASCSERVLRQQFRQQTGMTINQYLRQVRVCHAQYLL
RHAR_ECO24      LDKLITRLAASLKSPFALDKFCDEASCSERVLRQQFRQQTGMTINQYLRQVRVCHAQYLL
RHAR_SHIFL      LDKLITRLAASLKSPFALDKFCDEASCSERVLRQQFRQQTGMTINQYLRQVRVCHAQYLL
RHAR_SHIF8      LDKLITRLAASLKSPFALDKFCDEASCSERVLRQQFRQQTGMTINQYLRQVRVCHAQYLL
RHAR_ECO57      LDKLITRLAASLKSPFALDKFCDEASCSERVLRQQFRQQTGMTINQYLRQVRVCHAQYLL
RHAR_SHIDS      LDKLITRLAASLKSPFALDKFCDEASCSERVLRQQFRQQTGMTINQYLRQVRVCHAQYLL
RHAR_SALCH      LDKLITALANSLECPFALDAFCQQEQCSERVLRQQFRAQTGMTINQYLRQVRICHAQYLL
RHAR_SALTI      LDKLITALANSLECPFALDAFCQQEQCSERVLRQQFRAQTGMTINQYLRQVRICHAQYLL
RHAR_SALPA      LDKLITALANSLECPFALDAFCQQEQCSERVLRQQFRAQTGMTINQYLRQVRICHAQYLL
RHAR_SALTY      LDKLITALANSLECPFALDAFCQQEQCSERVLRQQFRAQTGMTINQYLRQVRICHAQYLL
RHAR_CROS8      LDLLMAALGNSLDVPFDLQHFCSHYQIAERPLRQLFRQQTGMTISQYLRQLRICQAQYLL
RHAR_YERPE      LDLIMSALQQSLGAYFDMADFCHKNQLVERSLKQLFRQQTGMSISHYLRQIRLCHAKCLL
RHAR_YERPA      LDLIMSALQQSLGAYFDMADFCHKNQLVERSLKQLFRQQTGMSISHYLRQIRLCHAKCLL
RHAR_YERPN      LDLIMSALQQSLGAYFDMADFCHKNQLVERSLKQLFRQQTGMSISHYLRQIRLCHAKCLL
RHAR_YERPS      LDLIMSALQQSLGAYFDMADFCHKNQLVERSLKQLFRQQTGMSISHYLRQIRLCHAKCLL
RHAR_PECAS      LDMLMNALRASIAAPFRFEAFCEQHHFSARSLRSRFKEQTGMSVPHYLRQLRLCKAMELL
RHAR_MANSM      LESLFSALNQSISQEFYLADFCRQHQLAVSSVRRIFKQQTNMTIAQYLQKLRLCRAATLL
                *: ::  *  *:   * :  ** .       ::  *: **.*:: :**:::*:*:*  **

RHAR_ECOLI      QHSRLLISDISTECGFEDSNYFSVVFTRETGMTPSQWRHLNSQKD--------
RHAR_ECOHS      QHSRLLISDISTECGFEDSNYFSVVFTRETGMTPSQWRHLNSQKD--------
RHAR_ECOUT      QHSRLLISDISTECGFEDSNYFSVVFTRETGMTPSQWRHLNSQKD--------
RHAR_ECOK1      QHSRLLISDISTECGFEDSNYFSVVFTRETGMTPSQWRHLNSQKD--------
RHAR_ECOL5      QHSRLLISDISTECGFEDSNYFSVVFTRETGMTPSQWRHLNSQKD--------
RHAR_SHIBS      QHSRLLISDISTECGFEDSNYFSVVFTRETGMTPSQWRHLNSQKD--------
RHAR_ECOL6      QHSRLLISDISTECGFEDSNYFSVVFTRETGMTPSQWRHLNSQKD--------
RHAR_ECO24      QHSRLLISDISTECGFEDSNYFSVVFTRETGMTPSQWRHLNSQKD--------
RHAR_SHIFL      QHSRLLISDISTECGFEDSNYFSVVFTRETGMTPSQWRHLNSQKD--------
RHAR_SHIF8      QHSRLLISDISTECGFEDSNYFSVVFTRETGMTPSQWRHLNSQKD--------
RHAR_ECO57      QHSRLLISDISTECGFEDSNYFSVVFTRETGMTPSQWRHLNSQKD--------
RHAR_SHIDS      QHSRLLISDISTECGFEDSNYFSVVFTRETGMTPSQWRHLNSQKD--------
RHAR_SALCH      QHSPLMVSEISMQCGFEDSNYFSVVFTRETGMTPSQWRHLSNQSD--------
RHAR_SALTI      QHSPLMVSEISMQCGFEDSNYFSVVFTRETGMTPSQWRHLSNQSD--------
RHAR_SALPA      QHSPLMISEISMQCGFEDSNYFSVVFTRETGMTPSQWRHLSNQSD--------
RHAR_SALTY      QHSPLMISEISMQCGFEDSNYFSVVFTRETGMTPSQWRHLSNQSD--------
RHAR_CROS8      RHSSLLISEIAARCGFEDSNYFSVVFTRETGVTPRVWRQQWGALAG-------
RHAR_YERPE      RGSEHRISDIAARCGFEDSNYFSAVFTREAGMTPRDYRQRFIRSPVLPAKNEP
RHAR_YERPA      RGSEHRISDIAARCGFEDSNYFSAVFTREAGMTPRDYRQRFIRSPVLPAKNEP
RHAR_YERPN      RGSEHRISDIAARCGFEDSNYFSAVFTREAGMTPRDYRQRFIRSPVLPAKNEP
RHAR_YERPS      RGSEHRISDIAARCGFEDSNYFSAVFTREAGMTPRDYRQRFIRSPVLPAKNEP
RHAR_PECAS      RYDLQTIGDVAALCGFEDSNYFSVVFHQAFGVSPSAYRQRFLNVE--------
RHAR_MANSM      RNTSESVANIAIRCGYSDSNYFSSVFGKTFSCTPTEYRSRFIKK---------
                :     :.:::  **:.****** ** :  . :*  :*