CLUSTAL format seed alignment for MF_04003
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Features found in the protein:- The following colors are used to highlight features:
- blue indicates SIGNAL, PROPEP, TRANSMEM, DOMAIN, ZN_FING, REPEAT,
DNA_BIND and CA_BIND.
- magenta is used to display DISULFID, THIOLEST and THIOETH.
- red is used for all other features, such as INIT_MET, ACTIVE SITE,
METAL,BINDING, NP_BIND, SITE, REGION, etc.
- The ID of the sequence used as the template for feature propagation is
underlined.
- A '<' at the beginning of a sequence or '>' at the end indicate that
the protein is fused with another domain either at the N- or C-terminus.
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VL2_BPV3 ------MVRAA---RR-----KRASEDDLSRGCRAG-QDCPIDIKNKYEQNTLADRILKW
VL2_BPV4 ------MVRAA---RR-----KRASEDDLYRGCRMG-QDCPIDIKNKYEHNTLADRILKW
VL2_HPV05 ------MARAK---TV-----KRDSVTHIYQTCKQA-GTCPPDVINKVEQTTVADNILKY
VL2_HPV5B ------MARAK---RV-----KRDSVTHIYQTCKQA-GTCPPDVINKVEQTTVADNILKY
VL2_HPV36 ------MARAK---RV-----KRDSVTHIYQTCKQA-GTCPPDVVNKVEQTTVADNILKY
VL2_HPV47 ------MARAR---RV-----KRDSVTHIYQTCKQA-GTCPSDVVNKVEQTTVADNILKY
VL2_HPV12 ------MARAK---RV-----KRDSVTHIYQTCKQA-GTCPPDVLNKVEQTTVADNILKY
VL2_HPV08 ------MARAR---RV-----KRDSVTHIYQTCKQA-GTCPPDVINKVEQTTVADNILKY
VL2_HPV14 ------MARAR---RV-----KRDSATNIYRTCKQA-GTCPPDVINKVESTTIADKILQY
VL2_HPV21 ------MARAK---RV-----KRDSATNIYRTCKQA-GTCPPDVINKVESTTIADKILQY
VL2_HPV20 ------MARAK---RV-----KRDSATNIYRTCKQA-GTCPPDVINKVESTTIADKILQY
VL2_HPV19 ------MARAR---RT-----KRDSATNIYRTCKQA-GTCPPDVINKVEQTTIADKILQY
VL2_HPV25 ------MARAR---RV-----KRDSATNIYRTCKQA-GTCPPDVLNKVENTTIADKILQY
VL2_HPV24 ------MVRAK---RT-----KRDSATNIYRTCKQA-GTCPPDVINKVEQSTIADNILKY
VL2_HPV49 ------MVRAR---RT-----KRDSVTNIYRTCKQA-GNCPPDVVNKVEQTTIADQILKF
VL2_HPV17 ------MARSR---RI-----KRASVTDIYRGCKQA-GTCPPDVINKVEQTTIADKILKY
VL2_HPV37 ------MARAR---RT-----KRASVTDIYRGCKQA-GTCPPDVINKVEQTTIADKILKY
VL2_HPV15 ------MARAR---RV-----KRASVTDIYRGCKQA-GTCPPDVLNKVEQTTIADKILKY
VL2_HPV09 ------MVRAK---RT-----KRASVTDIYRGCKAA-GTCPPDVINKVEHTTIADKILQY
VL2_HPV38 ------MVRAR---RT-----KRASVTDIYRGCKAS-NTCPPDVINKVEQSTIADKILKY
VL2_HPV22 ------MARAR---RT-----KRASVTDIYKGCKAS-GTCPPDVINKVEQNTLADKILKY
VL2_HPV23 ------MVRAQ---RT-----KRASVTDIYKGCKAS-GTCPPDVLNKVEQNTLADKILKY
VL2_HPV1 -------MYRL---RR-----KRAAPKDIYPSCKIS-NTCPPDIQNKIEHTTIADKILQY
VL2_HPV63 -------MLRV---RK-----RRAAPQDIYPACKVA-NNCPPDIQNKIEQTTVADKILQY
VL2_COPV6 -------MALI---RK-----RRAAPQDIYPACKVS-NTCPADILNKMEQNTLADKILKY
VL2_HPV04 ------MQSLS---RR-----KRDSVPNLYAKCQLS-GNCLPDVKNKVEADTLADRLLRW
VL2_HPV65 ------MQASR---RT-----KRDSIPNLYAKCQLS-GNCLPDVKNKVEADTLADRLLRW
VL2_HPV60 -----MYARVK---RV-----KRDSVENLYKQCQLG-ADCPPDVRNKVEGTTLADRLLQI
VL2_HPV48 -------MSLR---RR-----KRASPTDLYKTCLQG-GDCIPDVKNKFENSTIADWLLKI
VL2_HPV50 --------MLR---RR-----KRASPTDLYRSCLQG-GDCIPDVQNKFEGNTIADWLLKI
VL2_HPV16 ------MRHKR-SAKRT----KRASATQLYKTCKQA-GTCPPDIIPKVEGKTIAEQILQY
VL2_HPV35 ------MRHKR-STKRV----KRASATQLYRTCKAA-GTCPPDVIPKVEGNTVADQILKY
VL2_HPV31 ------MRSKR-STKRT----KRASATQLYQTCKAA-GTCPSDVIPKIEHTTIADQILRY
VL2_HPV33 ------MRHKR-STRR-----KRASATQLYQTCKAT-GTCPPDVIPKVEGSTIADQILKY
VL2_HPV58 ------MRHKR-STRR-----KRASATQLYQTCKAS-GTCPPDVIPKVEGTTIADQILRY
VL2_HPV67 ------MRHKR-STRR-----KRASATQLYQTCKAA-GTCPPDVIPKVERTTIADQILKF
VL2_HPV52 ------MRYRR-STRH-----KRASATQLYQTCKAS-GTCPPDVIPKVEGTTIADQLLKY
VL2_HPV34 ------MRRKRDTHIRR----KRASATQLYKTCKQS-GTCPPDIIPKVEGNTLADQILKY
VL2_RHPV1 MKHAHLSRRKRAAPRPPGGRQKRASATQLYQTCKAA-GTCPPDVIPKVEGTTVADQILKY
VL2_HPV32 ------MPPHR-SRRR-----KRASATQLYQTCKAS-GTCPPDVIPKIEGRTWADQILKW
VL2_HPV42 ------MPPQR-SRRR-----KRASATQLYQTCKAS-GTCPPDVIPKVEGTTLADKILQW
VL2_HPV54 ------MAKAR-APRR-----KRASATQLYQTCKAS-GTCPSDVIPKVEGTTIADQILRW
VL2_HPV6A ------MAHSR-ARRR-----KRASATQLYQTCKLT-GTCPPDVIPKVEHNTIADQILKW
VL2_HPV6B ------MAHSR-ARRR-----KRASATQLYQTCKLT-GTCPPDVIPKVEHNTIADQILKW
VL2_HPV11 -------MKPR-ARRR-----KRASATQLYQTCKAT-GTCPPDVIPKVEHTTIADQILKW
VL2_HPV44 ------MAHSR-ARRR-----KRASATQLYQTCKAA-GTCPSDIIPKVEHNTIADQILKW
VL2_HPV55 ------MAHSR-ARRR-----KRASATQLYQTCKAA-GTCPSDIIPKVEHNTIADQILKW
VL2_HPV13 ------MAHSR-ARRR-----KRASATQLYQTCKAS-GTCPPDVIPKVEQNTLADKILKW
VL2_PCPV1 ------MAHSR-PRRR-----KRASATQLYQTCKAS-GTCPPDIIAKVEQNTLADKILKW
VL2_HPV40 ------MVSSR-PRRR-----KRASATQLYQTCKAA-GTCPPDVVHKVEQTTVADQILKW
VL2_HPV07 ------MVSSR-PRRR-----KRASATQLYQTCKAA-GTCPPDVVNKVEQTTVADQILKW
VL2_HPV43 ------MVSHT-HKRR-----KRASATQLYQTCKAA-GTCPSDVINKVEHTTIADQILKW
VL2_HPV28 ------MVAHR-ARRR-----KRASATQLYRTCKAA-GTCPPDVIPKVEGTTLADRILQW
VL2_HPV03 ------MVAHR-ARRR-----KRASATQLYRTCKAA-GTCPPDVIPKVEGTTLADRILQW
VL2_HPV10 ------MVAQR-ARRR-----KRASATQLYRTCKAS-GTCPPDVIPKVEGTTLADRILQW
VL2_HPV29 ------MVAHR-ARRR-----KRASATELYKTCKVA-GTCPPDVIPKVEGTTLADRILQW
VL2_HPV18 ------MVSHR-AARR-----KRASVTDLYKTCKQS-GTCPPDVVPKVEGTTLADKILQW
VL2_HPV45 ------MVSHR-AARR-----KRASATDLYRTCKQS-GTCPPDVINKVEGTTLADKILQW
VL2_HPV39 ------MVSHR-AARR-----KRASATDLYRTCKQS-GTCPPDVVDKVEGTTLADKILQW
VL2_HPVME ------MVSHR-AARR-----KRASATELYKTCKQS-GTCPPDVINKVEGTTLADKLLQW
VL2_HPV70 ------MVSSR-ASRR-----KRASATDIYKTCKQS-GTCPPDVVNKVEGTTLADRFLQW
VL2_HPV30 ------MVAHR-ARRR-----KRASATQLYQTCKQA-GTCPSDVINKIEHTTLADKILQW
VL2_HPV53 ------MVAHR-ARRR-----KRASATQLYQTCKQS-GTCPEDVINKIEHKTWADKILQW
VL2_HPV56 ------MVAHR-ATRR-----KRASATQLYKTCKLS-GTCPEDVVNKIEQKTWADKILQW
VL2_HPV66 ------MVAHR-ATRR-----KRASATQLYKTCKLS-GTCPEDVINKVEQKTWADRILQW
VL2_HPV26 ------MVAVR-APRR-----KRASATDLYKTCKAA-GTCPPDVIPKIEGSTLADKILQW
VL2_HPV69 ------MVAVR-ASRR-----KRASATDLYKTCKAA-GTCPPDVIPKIEGSTLADKILQW
VL2_HPV51 ------MVATR-ARRR-----KRASVTQLYSTCKAA-GTCPPDVVNKVEGTTLADKILQW
VL2_HPV82 ------MVAAR-ARRR-----KRASVTQLYSTCKAA-GTCPPDVIPKVKGTTLADKILQW
VL2_HPV27 --------MPR-AKRR-----KRASPTDLYRTCKQA-GTCPPDIIPRLEQNTLADKILKW
VL2_HPV2A -------MSIR-AKRR-----KRASPTDLYRTCKQA-GTCPPDIIPRVEQNTLADKILKW
VL2_HPV57 -------MSPR-AKRR-----KRASPTDLYRTCKQA-GTCPPDIIPRVEQDTLADRILKW
VL2_HPV61 ---------MA-LKRR-----KRASATDLYRTCKQS-GTCPPDVVPKVEGDTLADRILKW
VL2_HPV62 -------MPKV-LHRR-----KRASATDLYRTCKVS-GTCPSDVIPKVEGNTLADKILKW
VL2_PAPVE -------MAP--------RRVKRANVYDLYRTCKQA-GTCPPDVIPKVEGKTIADKILQY
VL2_PAPVD -------MPPL-------KRVKRANPYDLYRTCKR--WKCPLMSFLKVEGKTVADKYCSM
VL2_BPV1 -------MSAR-------KRVKRASAYDLYRTCKQA-GTCPPDVIPKVEGDTIADKILKF
VL2_BPV2 -------MSAR-------KRVKRANVYDLYRTCKQA-GTCPPDVIPKVEGDTIADKILKL
VL2_BPV5 ------MAVRL-------RRVKRANPYDLYRTCAT--GDCPQDVKDRFEHNTIADKILKW
VL2_CRPVK ------MVARS---RK-----RRAAPQDIYPTCKIA-GNCPADIQNKFENKTIADKILQY
VL2_HPV41 -----MLARQR---------VKRANPEQLYKTCKATGGDCPPDVIKRYEQTTPADSILKY
:* .: * * : : * *:
VL2_BPV3 VSSFLYFGTLGISSGK----GTGGATGYTPIGG----GGVRGGK--------GANVVRPT
VL2_BPV4 VSSFLYFGQLGISSGK----GTGGSTGYTPLGGR-GGGGVTSGK--------GANVVRPT
VL2_HPV05 GSAGVFFGGLGISTGR----GTGGATGYVPLGE---GPGVRVGG--------TPTVVRPS
VL2_HPV5B GSAGVFFGGLGISTGR----GTGGATGYVPLGE---GPGVRVGG--------TPTVVRPS
VL2_HPV36 GSAGVFFGGLGIGSGR----GTGGATGYVPLSE---GPGIRVGG--------TPTVVRPS
VL2_HPV47 GSAGVFFGGLGIGTGR----GTGGATGYVPLGE---GPGVRVGG--------TPTVVRPS
VL2_HPV12 GSGGVFFGGLGIGTGR----GTGGVTGYRPLPE---GPGIRVGG--------TPTVVRPS
VL2_HPV08 GSAGVFFGGLGIGTGR----GTGGVTGYTPLSE---GPGIRVGN--------TPTVVRPS
VL2_HPV14 GSAGVFFGGLGISTGK----GTGGTTGYVPLGE---GPAVRVGG--------APTIIRPA
VL2_HPV21 GSAGVFFGGLGISTGK----GTGGTTGYVPLGE---GPAVRVGN--------APTVIRPA
VL2_HPV20 GSAGVFFGGLGISTGK----GTGGTTGYVPLGE---GPSVRVGG--------TPTVIRPA
VL2_HPV19 GSAGVFFGGLGISTGK----GTGGATGYVPLGE---GP-VRVGG--------TATVIRPS
VL2_HPV25 GSAGVFFGGLGISTGK----GTGGTTGYVPLGE---GP-IRVGG--------TPTVIRPS
VL2_HPV24 GSAGVFFGGLGISTGR----GTGGTTGYVPLGE---GTGVRVGS--------TPTVVRPA
VL2_HPV49 GSTGVFFGGLGIGTGR----GTGGSTGYVPIGE---GPAIRVGG--------TPSVVRPG
VL2_HPV17 GSSGVFFGGLGISTGR----GTGGATGYFPLGE---GPGVRVGG--------APTIVRPG
VL2_HPV37 GGAGVFFGGLGISTGR----GTGGATGYVPLGE---GPGVRVGG--------APTIVRPG
VL2_HPV15 GSAAVFFGGLGIGTGR----GSGGATGYVPLGE---GPGVRVGG--------TPTIVRPG
VL2_HPV09 GSAGVFFGGLGISTGR----GTGGATGYVPLGE---GPGVRVGG--------TPTIVRPG
VL2_HPV38 GSAAVFFGGLGISTGR----GTGGATGYVPLGQ---GPGVRVGG--------APTVVRPG
VL2_HPV22 GSVGVFFGGLGISTGK----GTGGPTGYIPLGQ---GPGVRVGA--------TPTVVRPG
VL2_HPV23 GSVGVFFGGLGIGTGK----GTGGATGYVPLR-----PGVRVGG--------TPTVVRPA
VL2_HPV1 GSLGVFLGGLGIGTAR----GSGGRIGYTPLGEG---GGVRVAT--------RPTPVRPT
VL2_HPV63 GSLGIFLGGLGIGTGK----GGGGRYGYTPLGDS---GAVRVGG--------RSTPVRPT
VL2_COPV6 GSAGVFLGGLGISTGK----GVGGRTGYIPLGGTE--SGVGVGT--------RVTTIRPT
VL2_HPV04 LGSVIYLGGLGIGTGR----GSGGSTGYNPIG-----APSRVTP--------SGTLVRPT
VL2_HPV65 LGSVIYLGGLGIGTGR----GSGGSSGYNPLG-----APSRVTP--------SGTVIRPT
VL2_HPV60 FGSILYLGNLGIGTGK----GSGGATGYTPLGT----ARVPAST--------PGTVIKPT
VL2_HPV48 FGSLVYFGNLGIGSGK----GSGGSFGYRPLGSA---GSGRPAT--------DLPVTRPN
VL2_HPV50 FGGLVYFGNLGIGTGR----GTGGTFGYRPFGAP---GSGRPTQ--------ELPIARPN
VL2_HPV16 GSMGVFFGGLGIGTGS----GTGGRTGYIPLGTRPPT--AT---D-------TLAPVRPP
VL2_HPV35 GSMAVFFGGLGIGSGS----GTGGRSGYVPLGTTPPT--AA---T-------NI-PIRPP
VL2_HPV31 GSMGVFFGGLGIGSGS----GTGGRTGYVPLSTRPST--VS---E-------ASIPIRPP
VL2_HPV33 GSLGVFFGGLGIGTGS----GSGGRTGYVPIGTDPPT--AA---I-------PLQPIRPP
VL2_HPV58 GSLGVFFGGLGIGTGS----GTGGRTGYVPLGSTPPS--EA---I-------PLQPIRPP
VL2_HPV67 GSLGVFFGGLGIGTGS----GTGGRTGYVPLSTRPPT--AS---A-------PTSTIRPP
VL2_HPV52 GSLGVFFGGLGIGTGA----GSGGRAGYVPLSTRPPT--SS---I-------TTSTIRPP
VL2_HPV34 GSIGVFFGGLGIGSGS----GTGGRTGYVPLPTTTPSRPVE---I-------PLQPTRPP
VL2_RHPV1 GSMGVYFGGLGIGSGA----GTGGRSGYVPLGSRPAS-------I-------PEPLPRPP
VL2_HPV32 GSTGVFFGGLGIGTGA----GSGGRTGYVPIGTRPPVV--A---E-------PGPAIRPP
VL2_HPV42 GSLGVFFGGLGIGTGA----GTGGRTGYVPLGTRPPVI--A---E-------PGPAVRPP
VL2_HPV54 GSMGVFFGGLGIGTGS----GTGGRTGYIPLG-RPSTT--L---E-------PGPPVRPA
VL2_HPV6A GSLGVFFGGLGIGTGS----GTGGRTGYVPLGTSAKPSITS------------GPMARPP
VL2_HPV6B GSLGVFFGGLGIGTGS----GTGGRTGYVPLQTSAKPSITS------------GPMARPP
VL2_HPV11 GSLGVFFGGLGIGTGA----GSGGRAGYIPLGSSPKPAITG------------GPAARPP
VL2_HPV44 GSLGVFFGGLGIGTGS----GTGGRTGYIPLQSTPRPDIPS------------VPTARPP
VL2_HPV55 GSLGVFFGGLGIGTGS----GTGGRTGYIPLQSTPRPEIPS------------GPTTRPP
VL2_HPV13 GSLGVFFGGLGIGTGS----GTGGRTGYVPVGSTPRPAIST------------GPTARPP
VL2_PCPV1 GSLGVFFGGLGIGTGS----GTGGRTGYVPVQTAPRPAIPF------------GPTARPP
VL2_HPV40 GSMGVFFGGLGIGSGS----GTGGRAGYVPLSTGSRAVPPK-SLV-------PDVVARPP
VL2_HPV07 GSMGVFFGGLGIGSGS----GSGGRAGYVPLSTGSRAIPPK-SLA-------PDVIARPP
VL2_HPV43 ASMGVYFGGLGIGTGS----GTGGRTGYVPLTTGRTGIVPKVTAE-------PGVVSRPP
VL2_HPV28 GGLGIYLGGLGIGTGS----GTGGRTGYVPLSTR-PGTVVDVSV-----------PARPP
VL2_HPV03 GSLGVYLGGLGIGTGS----GTGGRTGYAPISTR-PGTVVDVSV-----------PAKPP
VL2_HPV10 GSLGVYLGGLGIGTGS----GTGGRTGYVPISTR-PGTVVDVSV-----------PARPP
VL2_HPV29 GSLGVYLGGLGIGTGS----GTGGRTGYVPVGTR-PGTVVDVSI-----------PTRPP
VL2_HPV18 SSLGIFLGGLGIGTGS----GTGGRTGYIPLGGR-SNTVVDVG------------PTRPP
VL2_HPV45 SSLGIFLGGLGIGTGS----GSGGRTGYVPLGGR-SNTVVDVG------------PTRPP
VL2_HPV39 TSLGIFLGGLGIGTGT----GTGGRTGYIPLGGR-PNTVVDVS------------PARPP
VL2_HPVME TSLGIFLGGLGIGTGS----GTGGRTGYIPLGGK-PNTVVDVS------------PARPP
VL2_HPV70 ASLGIFLGGLGIGTGT----GTGGRTGYIPLGGR-PSTVVDVT------------PARPP
VL2_HPV30 GSLFTFFGNLGIGTGA----GSGGRAGYVPLGTR-PTTVVDAS------------PARPP
VL2_HPV53 GSLFTFFGGLGIGTGS----GTGGRTGYIPLGTR-PSTVVDVT------------PARPP
VL2_HPV56 GSLFTYFGGLGIGTGT----GSGGRAGYVPLGSR-PSTIVDVT------------PARPP
VL2_HPV66 GSLFTYFGGLGIGTGS----GSGGRAGYVPLGSR-PSTIVDVT------------PARPP
VL2_HPV26 SGLGIFLGGLGIGTGT----GSGGRTGYIPLGGGGRPSVVDIG------------PTRPP
VL2_HPV69 SGLGIFLGGLGIGTGT----GTGGRTGYIPLGGGGRPSVVDIG------------PTRPP
VL2_HPV51 SGLGIFLGGLGIGTGS----GSGGRTGYIPLGGGGRPGVVDIA------------PARPP
VL2_HPV82 SGLGIFLGGLGIGTGS----GTGGRTGYIPLGGGGRPGVVDIA------------PARPP
VL2_HPV27 GSLGVFFGGLGIGTGS----GTGGRTGYIPVGTR-PTTVVDIGV-----------APKPP
VL2_HPV2A GSLGVFFGGLGIGTGS----GTGGRTGYIPVGSR-PTTVVDIGP-----------TPRPP
VL2_HPV57 GSLGVFFGGLGIGTGS----GTGGRTGYIPVGTR-PTTVVDVGL-----------APRPP
VL2_HPV61 ASLGVFFGGLGIGTGS----GTGGRTGYVPIGTR-PPTVVDIGP-----------VSRPP
VL2_HPV62 ASLGVFFGGLGIGTAS----GTGGRTGYIPIGGR-PPSVVDIGP-----------VSRPP
VL2_PAPVE GSMGVYLGGLGIGTGS-GKPGTGG---YIPLRGGGSTTSLSSK-----------PFAGGI
VL2_PAPVD GSMGVYWRLALHGSG---RPTQGG---YVPLRGGGSSTSLSSRGSGSSTSIS-RPFAGGI
VL2_BPV1 GGLAIYLGGLGIGTWSTGRVAAGGSPRYTPLRTAGSTSSLASIGSRAVTAGTRPSIGAGI
VL2_BPV2 GGLAIYLGGLGIGTWSTGRVAAGGSPRYVPLRTSGSTTSLASVGSRAGAATGTRSSITGI
VL2_BPV5 GSAGVFLGGLGIGSTQ----ARPGLGTYSPLGRGGVTGRIPVRGPGS-----TRPLGRPF
VL2_CRPVK GSLGVFFGGLGISSAG----GSGGRLGYTPLSGGGGRVIAAAPVR-------PPITTESV
VL2_HPV41 GSVGVFFGGLGIGTGR---GGGGTVLGAGAVGGRPSISSGAIGPRD----ILPIESGGPS
. : .: ..
VL2_BPV3 ----VLVDALG-------PT-GVPIDPVTPDEALVPLLESSGGSTTL-----------DV
VL2_BPV4 ----VIVDALG-------PT-GVPIDPAVPDSSIVPLLESSGGSTTL-----------DA
VL2_HPV05 ----LVPETIG-------PVDILPIDTVNPVEPTASSVVPLTESTG------------AD
VL2_HPV5B ----LVPETVG-------PVDILPIDTVNPVEPTASSVVPLTESTG------------AD
VL2_HPV36 ----LVPEAIG-------PVDILPIDTIDPVEPTASSVVPLTESTG------------PD
VL2_HPV47 ----LVPEAIG-------PVDILPIDTIAPVEPTASSLVPLTESSG------------AD
VL2_HPV12 ----LVPESVG-------PADILPIDTIDPVEPTASSVVPLTESSA------------TD
VL2_HPV08 ----LVPEAVG-------PMDILPIDTIDPVEPSVSSVVPLTESSG------------AD
VL2_HPV14 ----LVPDTIG-------PSDIIPVDTLDPVEPTTSSIVPLTDSTG------------PD
VL2_HPV21 ----LVPDTIG-------PSDIIPVDTLNPVEPTTSSIVPLTDSTG------------PD
VL2_HPV20 ----LVPDTIG-------PSDIIPVDTLNPVEPSTSSIVPLTESTG------------PD
VL2_HPV19 ----LVPDTIG-------PSDIIPVDTLNPVEPTTSSIVPLTEASG------------SD
VL2_HPV25 ----LVPDTIG-------PSDIIPVDTLNPVEPTSSSIVPLTESSG------------PD
VL2_HPV24 ----LVPEVIG-------PADLLPVDTIAPVDPASSSIVPLTESSG------------VD
VL2_HPV49 ----ILPEAIG-------PADIIPIDTVNPIDPNASSVVPLTD-TG------------PD
VL2_HPV17 ----VIPELIG-------PADVIPIDTVTPIDPAAPSIVTITDSSA------------VD
VL2_HPV37 ----VIPELIG-------PADVIPIDTVTPIDPAAPSIVTITDSSA------------VD
VL2_HPV15 ----VTPELIG-------PADVIPIDTVTPIDPAAPSIVTITDSSA------------VD
VL2_HPV09 ----VIPEIIG-------PTDLIPLDTVRPIDPTAPSIVTGTDST-------------VD
VL2_HPV38 ----VIPEVIG-------PTELIPIDSVTPIDPTAPSIVSLTDSSA------------VD
VL2_HPV22 ----VIPEIIG-------PTELIPVDSVTPIDPAAPSIVTLTDSSAG-----------AD
VL2_HPV23 ----VIPEIIG-------PTELIPVDSIAPIDPEAPSIVSLTDSGAA-----------AD
VL2_HPV1 ----IPVETVG-------PSEIFPIDVVDPTGPAVIPLQDLG----------------RD
VL2_HPV63 ----VPVETVG-------PRDILPIDSLDPLGPSVIELEDI-------------------
VL2_COPV6 ----VPISSVG-------SPDFIPVDAVDPLGPAVIPPERFPIAVEDPFTLPP-----PR
VL2_HPV04 ----VPVESLG---PSE----IIPIDAIDPTTSSVVPLEDLTIPDVTVDSGDTRGIGETT
VL2_HPV65 ----VPVEGLG---PSE----IIPVDVVNPGSSSVVPLEDLTVPEVTIDSGEVGGGG---
VL2_HPV60 RPFSVPLDPIGSGIPSQPVGGRLPVDIIDASASSIIPLQEV-LPETTIIVGGDSGPG---
VL2_HPV48 ----VVIEPIG----------PQSIVPIDPGASSIVPLVEGGPDISFIAPDAGPGIG---
VL2_HPV50 ----VVIDPLG----------PAPIVPVDPSAASIVPLVEGAPDVGFAAPDAGPAAG---
VL2_HPV16 ----LTV------------------DPVGPSDPSIVSLVEETSFID--------------
VL2_HPV35 ----VTVESIP-------------LDTIGPLDSSIVSLVEETSFIE--------------
VL2_HPV31 ----VSI------------------DPVGPLDPSIVSLVEESGIVD--------------
VL2_HPV33 ----VTV------------------DTVGPLDSSIVSLIEETSFIE--------------
VL2_HPV58 ----VTV------------------DTVGPLDSSIVSLIEESSFID--------------
VL2_HPV67 ----VSV------------------DTVGPLDSSIVSMIEETSFIE--------------
VL2_HPV52 ----VTV------------------EPIGPLEPSIVSMIEETTFIE--------------
VL2_HPV34 ----VIT-------------------SVGASDSSIVSLVEESSFIE--------------
VL2_RHPV1 ----VTI------------------EPVGPSDPSIVSLLEESRLIE--------------
VL2_HPV32 ----VVV------------------DTIGPTDPSVISLLEESAVID--------------
VL2_HPV42 ----IAV------------------DTVGPSDPSIVSLLEESSVID--------------
VL2_HPV54 ----GAV------------------ETVAPSDPSIVSLVEESSVVD--------------
VL2_HPV6A ----VVV------------------EPVAPSDPSIVSLIEESAIIN--------------
VL2_HPV6B ----VVV------------------EPVAPSDPSIVSLIEESAIIN--------------
VL2_HPV11 ----VLV------------------EPVAPSDPSIVSLIEESAIIN--------------
VL2_HPV44 ----ILV------------------DTVAPGDPSIVSLVEESAIIN--------------
VL2_HPV55 ----ILV------------------DTVAPGDPSIVSLVEESAIIN--------------
VL2_HPV13 ----IVV------------------DTVGPTDPSIVSLVEESAIIN--------------
VL2_PCPV1 ----IIV------------------DTVGPSDSSIVSLVEDSTIIN--------------
VL2_HPV40 ----VVV------------------DTVAPSDPSIVSLIEESSIIQ--------------
VL2_HPV07 ----VVV------------------DTVAPTDPSIVSLIEESSIIQ--------------
VL2_HPV43 ----IVV------------------ESVAPTDPSIVSLIEESSIIQ--------------
VL2_HPV28 ----VVI------------------EPVGPSDPSIVNLLEDSSIIN--------------
VL2_HPV03 ----VVI------------------EPVGPSDPSIVNLLEDSSIIN--------------
VL2_HPV10 ----VVI------------------EPVGPSDPSIVNLLEDSSIIN--------------
VL2_HPV29 ----VVI------------------EPVGPSDPSIVTLLEESSVIN--------------
VL2_HPV18 ----VVI------------------EPVGPTDPSIVTLIEDSSVVT--------------
VL2_HPV45 ----VVI------------------EPVGPTDPSIVTLVEDSSVVA--------------
VL2_HPV39 ----VVI------------------EPVGPSEPSIVQLVEDSSVIT--------------
VL2_HPVME ----VVI------------------EPVGPTEPSIVQLVEDSSVIT--------------
VL2_HPV70 ----VVI------------------EPVGPTEPSIVQLVEESSVVS--------------
VL2_HPV30 ----IVV------------------ESVGPTDPSIVTLVEESSVVN--------------
VL2_HPV53 ----IVV------------------ESVGPTDPSIVTLVEESSVIE--------------
VL2_HPV56 ----IVV------------------ESVGPTDPSIVTLVEESSVIE--------------
VL2_HPV66 ----IVV------------------ESVGPTDPSIVTLVEESSVIN--------------
VL2_HPV26 ----III------------------EPVGPTEPSIVTLVEESSIIQ--------------
VL2_HPV69 ----III------------------EPVGPTEPSIVTLVEESSIIQ--------------
VL2_HPV51 ----III------------------DLWHHTEPSIVNLVEDSSIIQ--------------
VL2_HPV82 ----III------------------EPVAPTEPSIVNLVEDSSIIN--------------
VL2_HPV27 ----VVI------------------EPVGASEPSIVTLVEDSSIIN--------------
VL2_HPV2A ----VII------------------EPVGASEPSIVTLVEDSSIIN--------------
VL2_HPV57 ----VVI------------------EPVGASEPSIVNLVEDSSIIN--------------
VL2_HPV61 ----VVI------------------DPVGAADPSIVTLVEESSVIE--------------
VL2_HPV62 ----VVI------------------EPVGATDPSIVTLVEDSSIIE--------------
VL2_PAPVE PLETLEGIGAFRPGIVEDAG--PALEGILPDAPAVVTPEAVPVDEG--------------
VL2_PAPVD PLETLETVGAFRPGIIEEVA--PTLEGVLPDAPAVVTPEAVPVDQG--------------
VL2_BPV1 PLDTLETLGALRPGVYEDT--------VLPEAPAIVTPDAVPADSG--------------
VL2_BPV2 PLDTLETIGALRPGAYEDT--------VLPEAPAIVTPDAVPADTG--------------
VL2_BPV5 SSGPIDTIGAGVRTSVETSVTVPDVVAVLPESPAVITPDSMPVDPG--------------
VL2_CRPVK GPLDIVP------------------EVADPGGPTLVSLHELPAETP--------------
VL2_HPV41 LAEEIPLLPMA-------------PRVPRPTDPFRPSVLEEPFIIRPPERP-------NI
.
VL2_BPV3 PPGGEIEVIAEVHPPPAA----GDPEITIGHPEEPPILEVIPETHPTTRVRTTVSKHDNP
VL2_BPV4 TPGAEIEIIAEVHPPPVY----EGPEVTIGDIEEPPILEVVPETHPTSRVRSTTSKHDNP
VL2_HPV05 LLPGEVETIAEIHPVPEG-PSVDTPVVT-TSTGSSAVLEVAPEPIPPTRVRVSRTQYHNP
VL2_HPV5B LLPGEVETIAEIHPVPEG-PSVDTPVVT-TSTGSSAVLEVAPEPIPPTRVRVSRTHYHNP
VL2_HPV36 LLPGEVETIAEIHPVAEG-PSVDTPVVT-TSTGSSAVLEVAPEPIPPTRVRISRTQYHNP
VL2_HPV47 LLPGEVETIAEIHPIPEG-PTIDSPVVT-TTTGSSAVLEVAPEPVPPTRVRIARTQYHNP
VL2_HPV12 LLPGEVETIAEINPVSEG-PTIDSPVVT-TSRGSSAILEVAPDPIPPTRVRVARTQYHNP
VL2_HPV08 LLPGEVETIAEIHPVPEG-PTIDSPVVT-TSKGSSAILEVAPEPTPPTRVRVSRTQYHNP
VL2_HPV14 LLPGEVETIAEVHPGPSR-PPTDTPVTT-STGGSSAILEVAPEPTPPSRVRVTRTQYHNP
VL2_HPV21 LLPGEVETIAEIHPGPTR-PPPDTAVTT-STNGSSAVLEVAPEPTPPSRVRVTRTQYHNP
VL2_HPV20 LLPGEVETIAEIHPGPSR-PPTDTPVTS-TTSGSSAVLEVAPEPTPPARVRVSRTQYHNP
VL2_HPV19 LLPGEVETIAEVHPTPSI-PSTDTPVTT-TSSGASAVLEVAPEPVPPSRVRVTRTQYHNP
VL2_HPV25 LLPGEVETIAEIHPGPVV-PSTDTPVTT-TSRGASAVLEVAPEPTPPSRVRVSGTQYHNP
VL2_HPV24 LLPGEIETIAEVHPIPDV-PTFDTPVVT-TSKGSSAILEVAPEPTPPTRVRVSRTQYHNP
VL2_HPV49 LLPGTIETIAEVNPAPDI-PRVDTSVVT-TSRGSSAVLEVASEPTPPTRTRISRTQYHNP
VL2_HPV17 LLPTELETIAEIHPVPTDNLDIDTPVVS-GGRDSSAVLEVAD-PSPPVRTRVSRTQYHNP
VL2_HPV37 LLPNEIETIAEVHPVPTDNLDIDTPVVT-GGRDSSAVLEVAD-PSPPVRTRVSRTQYHNP
VL2_HPV15 LLP-ELETIAEIHPVPTDNVDIDTPVVT-GGRDSSAILEVAD-PSPPVRTRVSRTQYHNP
VL2_HPV09 LLPGEIESIAEIHPVPVDNAVVDTPVVTEGRRGSSAILEVAD-PSPPMRTRVARTQYHNP
VL2_HPV38 LLPGEVETIAEVHPGPIDPIEIDTPVVS-GGRNTNAILEVAD-PHPPTRATVSRTQYNNP
VL2_HPV22 LLPGEVETIAEVHPVPIDNVELDTPLVS-GDRH--AILEVTD-ANPPFRRTVTRTQYHNP
VL2_HPV23 LFPSEAETIAEVHPTPVD-IGIDTPIVA-GGRD--AILEVVD-TNPPTRFSVTRTQYDNP
VL2_HPV1 FPIPTVQVIAEIHPI----SDIPNIVASSTNEGESAILDVLRGNATIR--TVSRTQYNNP
VL2_HPV63 -PATTVEVVAEVHPI----SDTPQIPAPTTDESSSAVLHIPQESPAAR--TITRSQYNNP
VL2_COPV6 FPTAVEEDVIELQPIPGPSSEIPLAGPKITTDAQPAILEVIPETRPPK--VITRHQYSNP
VL2_HPV04 LQPAQVDISTSHDPISDVTGASSHPTIISGEDNAIAVLDVSPIEPPTKRIALATRGASAT
VL2_HPV65 LHPSEIDVVTSSDPISDVTGTSSHPTIISGEDNAIAVLDVSPTEPPTKRIALGTRGATST
VL2_HPV60 LGASEIDIVS--EPRPDVVGVDTQPTVYTSIDNTVATLDITPATPPVKKIILDPISSGSE
VL2_HPV48 --GEDIELFTFRDPATDVGGVSGGPTTISTEESETAIIDALPSATTPKQLFYDSYTQTIL
VL2_HPV50 --GTDIELYTITNSTTDVGAVGGGPTVTSNEEFEVAVIDAQPIAPYPKQLLYDSTIAATF
VL2_HPV16 --------AGAPTSVPSIPPDVSGFSITTSTD---TTPAILDINNT----VTTVTTHNNP
VL2_HPV35 --------SGAPVVTPRVPP-TTGFTITTSTD---TTPAILD--------VTSISTHDNP
VL2_HPV31 --------VGAPAPIPHPPT-TSGFDIATTAD---TTPAILD--------VTSVSTHENP
VL2_HPV33 --------AGAPA--PSIPT-PSGFDVTTSAD---TTPAIINVSSVGESSIQTISTHLNP
VL2_HPV58 --------AGAPA--PSIPT-PSGFDITTSAD---TTPAILNVSSIGESSIQTVSTHLNP
VL2_HPV67 --------SGAPA--PSIPT-ASGFDVATSAD---NTPAIINVSSIGESSVQSVTTHLNP
VL2_HPV52 --------SGAPA--PSIPS-ATGFDVTTSAN---NTPAIINVTSIGESSVQSVSTHLNP
VL2_HPV34 --------AGVPGPTSIVPS-SSGFNVTTSVD---STPAIIDVATISDTTQVSVSTFNNP
VL2_RHPV1 --------AGVPA--PTFPT-HGGFEISTSEV---STPAVLDVSSGGSDVHVSVTSFTNP
VL2_HPV32 --------SSIPV--PTDTS-HGGFNITSSASGPSSTPAVLDISPPTNTIRVASTTSHNP
VL2_HPV42 --------AGITV--PDITS-HGGFNITTSTGGPASTPAILDISPPTNTIRVTTTTSTNP
VL2_HPV54 --------VGAPT--PTIPS-QGGFEIATSSD---ATPAILDVTSTTTPIRVSITSHDNP
VL2_HPV6A --------AGAPE---IVPPAHGGFTITSSET---TTPAILDVSVTSH---TTTSIFRNP
VL2_HPV6B --------AGAPE---IVPPAHGGFTITSSET---TTPAILDVSVTSH---TTTSIFRNP
VL2_HPV11 --------AGAPE---VVPPTQGGFTITSSES---TTPAILDVSVTNH---TTTSVFQNP
VL2_HPV44 --------SGAPE---LVPPSHAGFEITTSES---TTPAILDVSVTTH--TTSTSVFKNP
VL2_HPV55 --------SGAPE---LVPPSHGGFEITTSES---TTPAILDVSVTTH--TTSTSVFRNP
VL2_HPV13 --------SGVPD---PLPPVHGGFEITTSQS---ATPAILDVSVTTQN-TTSTSIFRNP
VL2_PCPV1 --------SAASD---FVPPIREGFEISTSET---TTPAILDVSVTTHN-TTSTSIFKNP
VL2_HPV40 --------SGAPS---LTIPTEGGFSVTSSGT---DVPAILDVSSTNTV-HVTATTHHNP
VL2_HPV07 --------SGAPS---PVIPTEGGFSITSSGT---DVPAILDISSTNTV-HVTSTTHHNP
VL2_HPV43 --------SGAPI---TNIPSHGGFEVTSSGS---EVPAILDVSPSTSV-HITTSTHLNP
VL2_HPV28 --------SGSTV---PTFSGTGGFEVTSSAT---TTPAVLDITPATDNVVISSSNFTNP
VL2_HPV03 --------SGSTI---PTFTGTDGFEVISSAT---TTPAVLDITPASDNVVVSSTNFSNP
VL2_HPV10 --------SGSTI---PTFSGTSGFEVTSSAT---TTPAVLDITPASENVVISSTNFTNP
VL2_HPV29 --------SGATI---PTFTGTSGFEITSSAT---TTPAVLDITPAGDNVVITSTNFNNP
VL2_HPV18 --------SGAPR---PTFTGTSGFDITSAGT---TTPAVLDITPSSTSVSISTTNFTNP
VL2_HPV45 --------SGAPV---PTFTGTSGFEITSSGT---TTPAVLDITPTVDSVSISSTSFTNP
VL2_HPV39 --------SGTPV---PTFTGTSGFEITSSST---TTPAVLDITPSSGSVQITSTSYTNP
VL2_HPVME --------SGTPV---PTFTGTSGFEITSSST---TTPAVLDITPSSGSVQVSSTSFTNP
VL2_HPV70 --------SGTPI---PTFTGTSGFEITSSAT---TTPAVLDITPASGSVQISTTSYTNP
VL2_HPV30 --------AGASF---PNFTGTAGFEVTSSST---TTPAVLDITPTTGSVHVSSTHFTNP
VL2_HPV53 --------SGASF---PNFTGTAGFEVTSSST---TTPAVLDITPTSTSVHVSSTTYTNP
VL2_HPV56 --------SGAGI---PNFTGSGGFEITSSST---TTPAVLDITPTSSTVHVSSTHITNP
VL2_HPV66 --------SGAGV---PNFTGSGGFEVTSSST---TTPAVLDITPTSSTVHVSSTTITNP
VL2_HPV26 --------SGAPI---PTFSGGNGFELTTSSA---TTPAVLDITPSAGTVHVTSTNIQNP
VL2_HPV69 --------SGSPF---PNFSGGDGFEVTTSST---TTPAVLDITPSPGTVHVTSTNIQNP
VL2_HPV51 --------SGSPI---PTFTGTDGFEITSSST---TTPAVLDITPSAGTVHVSSTNIENP
VL2_HPV82 --------SGSTI---PTFTGTDGFEITSSST---TTPAVLDITPSAGTVHVTSTNIENP
VL2_HPV27 --------AGASH---PTFTGTGGFEVTTSTV---TDPAVLDITPSGTSVQVSSSSFLNP
VL2_HPV2A --------AGASH---PTFTGTGGFEVTTSTV---TDPAVLDITPSGTSVQVSSSSFLNP
VL2_HPV57 --------AGSSH---PTFTGTGGFEVTTSTV---TDPAVLDITPSGNGVQVSSSSFVNP
VL2_HPV61 --------AGATV---PTFSGSGGFNVTSSST---TTPAVLDITPSGGSVQVSSTSFINP
VL2_HPV62 --------AGAVH---PNFTGSSGFEVTTSST---ATPAVLDISPTGTTVQVSSTNFLNP
VL2_PAPVE --------LSGLDISRELSQEQILSFLHPEGPDDIAVLEVRPTEHD-QAHLLSTSTHPNP
VL2_PAPVD --------LSGLDVAREVTQESLITFLQPEGPDDIAVLELRPTEHD-QTHLISTSTHPNP
VL2_BPV1 --------LDALSIGTDSSTETLITLLEPEGPEDIAVLELQPLDR--PTWQVSNAVHQSS
VL2_BPV2 --------IDGLSIGTDSSTETLITLLEPEGPEDVAVLELQPLDH--ANWQVSNAVHQGS
VL2_BPV5 --------VGGLDISAEIIEEPSLTFVEPHGPEDVAVLDVNPAEHDRSVYLSSSTTHHNP
VL2_CRPVK -----------YVSSTNVTGDGAAEPLPAGHGGSQISDVTSGTSGTVSRTHINNPVFEAP
VL2_HPV41 LHEQRFPTDAAPFDNGNTEITTIPSQYDVSGGGVDIQIIELPSVNDPGPSVVTRTQYNNP
VL2_BPV3 AFTAYVASAQLPGETSASDNVFILHGFNGEYVGPAQ---------TGEDTVFEEI----E
VL2_BPV4 AFTAYVASAQLPGETSASDNVYILHGFNGDFVGQAD---------PEGDTIFEEI----P
VL2_HPV05 SFQIITESTPAQGESSLADHVLVTSGSGGQRIGGDI-------TDIIELEEIPSR----Y
VL2_HPV5B SFQIITESTPAQGESSLADHVLVTSGSGGQQIGGDI-------TDIIELEEIPSR----Y
VL2_HPV36 SFQIITESTPAQGESSLADHILVTSGSGGQRIGADI-------TDEIELQELPSR----Y
VL2_HPV47 SFQILTESTPAQGESSLADHILVTSGSGGQRIGGDI-------TDEIELTEFPSR----Y
VL2_HPV12 AFQIITESTPAQGETSLADHILVTSGSGGQTIGSDI-------TDIIELQEIPSR----Y
VL2_HPV08 SFQIITDSTPTQGESSLADHILVTSGSGGQTIGSDI-------TDVIELQEFPSR----Y
VL2_HPV14 SFQVITESTPTTGESSLADNILVTSGSGGQTIGGAT-------PELIELQELPSR----Y
VL2_HPV21 SFQVITESTPTTGESSLADHILVTSGTGGQTIGGST-------PELIELQDFPSR----Y
VL2_HPV20 SFQIITESTPTLGESSLADHIVVTSGSGGQAIGGMT-------PELIELQDFPSR----Y
VL2_HPV19 SFQILTESTPTQGESSLADHILVTSGSGGQTIGSSG-------SDLIELQEFPTR----Y
VL2_HPV25 SFQVITESTPAQGESSLADHILVTSGSGGQTIGGTA-------SDLIELQEFPTR----Y
VL2_HPV24 AFHIITESTPSQGESSLSDEIIVASGAGGQSVG--V-------SENIELQDLSNR----Y
VL2_HPV49 SFQILTESTPSLGESALTDHVVVTSGSGGQPIGGVT-------PVEIELQELPSR----Y
VL2_HPV17 SFQVITESTPLSGESAMADHVLVFEGFGGQNIGGSRNAAIDTAQESFEMQSWPSR----Y
VL2_HPV37 SFQIITESTPLAGESALADHVIVFEGTGGQNIGGSRNATIETAQESFEMQSWPSR----Y
VL2_HPV15 SFQIITESTPLSGESALADHVIVFEGSGGQNIGGSRSAALDAAQESFEMQTWPSR----Y
VL2_HPV09 AFQIISESTPMSGESSLADHIIVFEGSGGQLVGGPR-ESYTASSENIELQEFPSR----Y
VL2_HPV38 AFQIISEVIPTSGESSLADHVLVSEGSGGQQIGGTR------TAEEIELQPLLSR----Y
VL2_HPV22 AFEIISESTPLIGESTPSDHVFVFEGSGGVQVGDAN--------ESIELDTFPSR----Y
VL2_HPV23 SFQIISESTPITGEASLADHVFVFEGSGGQHVGAVT--------EEIELDTYPSR----Y
VL2_HPV1 SFTVASTSNISAGEASTSDIVFVSNGSGDRVVGEDI--------PLVELNLGLET----D
VL2_HPV63 LFRITASADIASGEASASDNIFIDVDTPGQIVGQEI--------PLVNFDMGPIS----T
VL2_COPV6 AFEVSITSNSGAGESSASDHVLVEGFSGGHSIGEHI--------PLQDLAPSRPS----F
VL2_HPV04 PHVSVISGTTEFGQ-SSDLNVFVNATFSGDSIG-----------YTEEIPLEPLN----P
VL2_HPV65 PHISVISGTTEFGQ-SSDLNVFVNATFSGDSIG-----------YTEEIPLEELN----T
VL2_HPV60 GAAAITFSDISA----ADLNVFVDPQGAGDRIS-----------FGEEIELGPIN----Q
VL2_HPV48 QTQVNPFLNNAI----SDTNVFVDPLFAGETIGD---------NIFEEIPLQNLN----F
VL2_HPV50 ETQINPFINPDI----NNVNVLVDPSFAGDTVGD---------YFYEEIPLERLD----I
VL2_HPV16 TFTDPSVLQPPTPAETGGHFTLSS-------------------STISTHNYEEIP----M
VL2_HPV35 TFTDPSVLHPPTPAETSGHFVLSS-------------------SSISTHNYEEIP----M
VL2_HPV31 TFTDPSVLQPPTPAETSGHLLLSS-------------------SSISTHNYEEIP----M
VL2_HPV33 TFTEPSVLHPPAPAEASGHFIFSS-------------------PTVSTQSYENIP----M
VL2_HPV58 SFTEPSVLRPPAPAEASGHLIFSS-------------------PTVSTHSYENIP----M
VL2_HPV67 TFTEPSVLRPFSSSEASGHLIFST-------------------PTISTHSYEDIP----M
VL2_HPV52 TFTEPSIIQPPAPAEASGHVLFSS-------------------PTISTHTYEEIP----M
VL2_HPV34 TFTDPSVLQPPPPLEASGRLLFSN-------------------DTVTTHSYENIP----L
VL2_RHPV1 TFTEPSVLRPPPPVEASGRLVISA-------------------SSVSTHSYEEIP----M
VL2_HPV32 VYSDPFTLRPSLPVEGNGRLLTSH-------------------PTIAPHSYEEIP----M
VL2_HPV42 LYIDPFTLQPPLPAEVNGRLLIST-------------------PTITPHSYEEIP----M
VL2_HPV54 IYTEPSLLDPPPPVQMDGRVLVST-------------------STLQSSTAENIP----M
VL2_HPV6A VFTEPSVTQPQPPVEANGHILISA-------------------PTITSHPIEEIP----L
VL2_HPV6B VFTEPSVTQPQPPVEANGHILISA-------------------PTVTSHPIEEIP----L
VL2_HPV11 LFTEPSVIQPQPPVEASGHILISA-------------------PTITSQHVEDIP----L
VL2_HPV44 SFADPSVVQSQPAVEAGGHILIST-------------------SSISSHPVEEIP----L
VL2_HPV55 SFADPSVVQSQPAVEAGGHILIST-------------------STISSHPVEEIP----L
VL2_HPV13 VFSEPSITQSQPSIESGAHVFISP-------------------STISPHSTEDIP----L
VL2_PCPV1 AFAEPSIVQSQPSVEASGHVLTSTYT-----------------STISSHSVEDIP----L
VL2_HPV40 VFTDPSVVQPIPPVEAGGRLIVSH-------------------STITTSAAEEIP----L
VL2_HPV07 IFTDPSVVQPIPPVEASGRIIVSH-------------------SSITTGAAEEIP----M
VL2_HPV43 AFTDPTIVQPTPPVEAGGRIIISH-------------------STVTADSAEQIP----M
VL2_HPV28 AFTEPSLLEVPQNGEVSGHILVST-------------------PTAGTHSYEEIP----M
VL2_HPV03 AFTEPSLLEVPQNGEVSGHILIST-------------------PTSGTHGYEEIP----M
VL2_HPV10 AFTEPSLVEVPQSGEVSGHILIST-------------------PTAGTHGYEEIP----M
VL2_HPV29 LFTEPSLLEIPQTGETSGRVLVGT-------------------PTSGVHGYEEIP----M
VL2_HPV18 AFSDPSIIEVPQTGEVAGNVFVGT-------------------PTSGTHGYEEIP----L
VL2_HPV45 AFSDPSIIEVPQTGEVSGNIFVGT-------------------PTSGSHGYEEIP----L
VL2_HPV39 AFTDPSLIEVPQTGETSGNIFVST-------------------PTSGTHGYEEIP----M
VL2_HPVME AFADPTIIEVPQTGEVSGNVFVST-------------------PTSGTHGYEEIP----M
VL2_HPV70 AFADPSLIEVPQTGEVSGNIFVTT-------------------PTSGTHGYEEIP----M
VL2_HPV30 SFVEPPVIEVPQTGEVSGHILVST-------------------PTSGVHSYEEIP----M
VL2_HPV53 TFVDPPVIEVPQTGEVSGNILIST-------------------PTSGVHSYEEIP----M
VL2_HPV56 LFIDPPVIEAPQTGEVSGNILIST-------------------PTSGIHSYEEIP----M
VL2_HPV66 LYIDPPVIEAPQTGEVSGNILIST-------------------PTSGIHSYEEIP----M
VL2_HPV26 LYIEPP-IDIPQAGEASGHIFTTT-------------------STAGTHSYEEIP----M
VL2_HPV69 LYIEPP-VDIPQSGEALGHIFTST-------------------STAGTHSYEEIP----M
VL2_HPV51 LYIEPPSIEAPQSGEVS-DIYLLV-------------------HYSGTHGYEEIP----M
VL2_HPV82 LYIEPPFIEAPQSGEVSGHIFTST-------------------PTSGTHGYEEIP----M
VL2_HPV27 LYTEPAIVEAPQTGEVSGHVLVST-------------------ATSGSHGYEEIP----M
VL2_HPV2A LYTEPAIVEAPQTGEVSGHVLVST-------------------ATSGSHGYEEIP----M
VL2_HPV57 LFTDPAIIEAPQAGEVTGHVLVST-------------------ATSGSHGFEEIP----M
VL2_HPV61 LFTEPSIIEPPQAGDLAGHVISST-------------------PTAGSHSFEEIP----M
VL2_HPV62 AYTEPSIIDPPQTGELSGHVLTST-------------------PTAGSHSYEEIP----M
VL2_PAPVE LFQGPVQQARIIAETSGAENVFVGG------------------SGIGSNAGEDIE----L
VL2_PAPVD LFHAPIQQSSIIAETSGSENIFVGG------------------GGVGSTTGEEIE----L
VL2_BPV1 AYHAPLQLQSSIAETSGLENIFVGG------------------SGLGDTGGENIE----L
VL2_BPV2 AYHAPLQLQSSIAETSGLENIFVGG------------------AGLGDTGGENIE----L
VL2_BPV5 SFQGQVTVYTDIGETSETENLLISG------------------SNIGSSRGEEIQ----M
VL2_CRPVK MTGDQDVSDVHVFAHSESSITINQT------------------ENTGGELIEMVP----L
VL2_HPV41 TFEVEVSTDISGETSSTDNIIVGAESGG-----------TSVGDNAELIPLLDISRGDTI
VL2_BPV3 LENFGVPESPPSSSTPNTSFRNILNKFQRRLYNRRLVQQVKITDR-TFLTKPSKLVSWEF
VL2_BPV4 LEEFGVPDMPPSTSTPTSSFRSVLNKFQRRLYNRKLVQQVKITNRNTFLKQPSQFVQWEF
VL2_HPV05 TFEIEEPTPPRRSSTPLPRNQSVGRRRGFSLTNRRLVQQVQVDNP-LFLTQPSKLVRFAF
VL2_HPV5B TFEIEEPTPPRRSSTPLPRNQSVGRRRGFSLTNRRLVQQVQVDNP-LFLTQPSKLVRFAF
VL2_HPV36 TFENEEPTPPRRSSTPLQATRAAGRRRGVSLTNRRLVQQVPVENP-LFLTQPSRLVRFAF
VL2_HPV47 TFEIEEPTPPRKSSTPLQTVASAVRRRGFSLTNRRLVQQVAVDNP-LFLSQPSKMVRFSF
VL2_HPV12 SFEIEEPTPPRQSSTPLQRTQTTGRRRGVSLTNRRLVQQVQVDNP-LFIDKPSKLVRFSF
VL2_HPV08 SFEIDEPTPPRQSSTPIERPQVVGRRRGISLTNRRLIQQVAVEDP-LFLSKPSKLVRFSF
VL2_HPV14 SFEIEEPTPPRRTSTPLQRIQTAIRRRGG-LTNRRLVQQVSVENP-LFLTRPSRLVQFQF
VL2_HPV21 SFEIEEPTPPRRTSTPIQRIQNIIRRRGGGLTNRRLVQQVNVENP-LFVSRPSRLVQFQF
VL2_HPV20 SFEIEEPTPPRRTSTPMQRLQNVFRRRGG-LTNRRLVQQVPVDNP-LFLTQPSRLVRFQF
VL2_HPV19 SFEIEEPTPPRQSSTPIQRLRTAFRRRGG-LTNRRLVQQVAVDDP-IFLTQPSRLVSFQF
VL2_HPV25 SFEIDEPTPPRQSSTPLQRIRTALRRRGG-LTNRRLVQQVPVEDP-LFLSQPSRLVRFQF
VL2_HPV24 SFEIETPTPPRRSSTPLQRATQAFRQR--SLTNRRLLQQVPVEDP-LFLTQPSKLVRFAF
VL2_HPV49 TFEIEEPTPPRRSSTPLRNITQAVGNLRRSLYNRRLTQQVNVQDP-LFLQQPSRLVRFAF
VL2_HPV17 SFELEEGTPPR-TSTPVQRAVESLSSLRRALYNRRLTEQVAVTDP-LFLSRPSRLVQFQF
VL2_HPV37 SFEIEEGTPPR-SSTPVQRAVQSLSSLRRALYNRRLTEQVAVTDP-LFLSRPSQLVQFQF
VL2_HPV15 SFEIQEGTPPR-SSTPVQRAVQSLSSLRRALYNRRLTEQVAVTDP-LFLGRPSRLVQFQF
VL2_HPV09 SFEIDEGTPPR-TSTPVQRAVQSLSSLRRALYNRRLTEQVAVTDP-LFLSRPSRLVQFQF
VL2_HPV38 SFEIEEPTPPRRTSTPLQRARQQFSSLRRALYNRRLTEQVGVTDP-LFFTSPSKLVRFQF
VL2_HPV22 SFDIEEPTPPRRVSTPIERISQEFRTLRRALYNRRLTEQVQVRDP-LFIRSPSRLVRFQF
VL2_HPV23 SFEIEEATPPRRTSTPIERISQEFRNLRRALYNRRLTEQVQVKNP-LFLTTPSKLVRFQF
VL2_HPV1 TSSVVQETAFSSSTPIAERP----SFRPSRFYNRRLYEQVQVQDP-RFVEQPQSMVTFDN
VL2_HPV63 EGEL--ETEFTTSTPRTTQV----QERPTRFYNRRYYEQVPVTAP-EFITRPASLVTFEN
VL2_COPV6 SETIEDETAFSSSTPKQGSR----SERPKSYYNRRRYQQVQVTDP-VFISRPRSLVTFDN
VL2_HPV04 FQEFEIESPPKTSTPR--DVLNRAIGRARDLYNRRVQQIPTRNPA--LLTQPSRAIVFGF
VL2_HPV65 IQQFEIETPPKTSTPR--ETIGRALERARDLYNRRVQQIATRNPA--MLGQPSRAIVFGF
VL2_HPV60 PAQFEIEEPPRTSTPG--EGFQRVTTRARELYNRFVQQQPTQNID--FLGRPSRAVQFEF
VL2_HPV48 SF-------PRESTPV--KPGRGLRTPAQRSYSRFMEQYPIQAPE--FLSQPSRLVQFEF
VL2_HPV50 QTFDILE-PPTESTPT--QLGNRFVSRARDLYSRFVAQQPISEPD--FLSQPSRLVQFEY
VL2_HPV16 DTFIVST-NPNTVTSSTPIPGSRPV--ARLGLYSRTTQQVKVVDP-AFVTTPTKLITYDN
VL2_HPV35 DTFIVST-DSNNITNSTPIPGSRPT--TRLGLYSKGTQQVKVVDP-AFMTSPAKLITYDN
VL2_HPV31 DTFIVST-NNENITSSTPIPGVRRP--ARLGLYSKATQQVKVIDP-TFLSAPKQLITYEN
VL2_HPV33 DTFVVST-DSSNVTSSTPIPGSRPV--ARLGLYSRNTQQVKVVDP-AFLTSPHKLITYDN
VL2_HPV58 DTFVIST-DSGNVTSSTPIPGSRPV--ARLGLYSRNTQQVKVVDP-AFLTSPHRLVTYDN
VL2_HPV67 DTFIVST-TSDNVTSSTPIPRPRPT--ARLGLYSKGTQQVKVVDP-AFLTSPRRLITFDN
VL2_HPV52 DTFVTST-DSSSVTSSTPIPGSRPT--TRLGLYSRATQQVKVVDP-AFMSSPQKLVTYNN
VL2_HPV34 DTFVVTT-DNNSIVSSTPIPGRHPP--ARLGLYGRAIQQVKVVDP-AFVTTPTRLVTYDN
VL2_RHPV1 DTFVITG-DHNYNTTSTPIPGSRAP--ARLGLYGRATQQVRVVDP-AFITTPARLVTYDN
VL2_HPV32 DTFVVST-DTSNTVTSTPIPGPRPT--MRLGLYTRVTQQRPVATT-TFLTSPERLVTYDN
VL2_HPV42 DTFVVST-DTTNTFTSTPIPGPRSS--ARLGLYSRATQQRPVTTS-AFLTSPARLVTYDN
VL2_HPV54 DTFIIMQ-DHIGTTTSTPIPRPPAR--PRLGLYSRALQQVPVQDP-AFLQQPSSLITYDN
VL2_HPV6A DTFVISS-SDSGPTSSTPVPGTAPR--PRVGLYSRALHQVQVTDP-AFLSTPQRLITYDN
VL2_HPV6B DTFVVSS-SDSGPTSSTPVPGTAPR--PRVGLYSRALHQVQVTDP-AFLSTPQRLITYDN
VL2_HPV11 DTFVVSS-SDSGPTSSTPLPRAFPR--PRVGLYSRALQQVQVTDP-AFLSTPQRLVTYDN
VL2_HPV44 DTFIVSS-SDSNPASSTPIPASGAR--PRIGLYSKALHQVQVTDP-AFLSSPQRLITFDN
VL2_HPV55 DTFIVSS-SDSNPASSTPIPASGAR--PRIGLYSKALHQVQVTDP-AFLSSPQRLITFDN
VL2_HPV13 DTFIVSS-SDSNPASSTPVPATVAR--PRLGLYSRALHQVQVTDP-AFLSSPQRLITFDN
VL2_PCPV1 DTFIVSS-SDSNPASSTPVPTPVAR--PRLGLYSKALQQVQVTNP-AFLSSPQRLITFDN
VL2_HPV40 DTFVV----HSDPLSSTPVPGTSGR--PRLGLYSKALQQVEIVDP-AFLSTPQRLITYDN
VL2_HPV07 DTFVV----HSDPLSSTPVPGVSAR--PKVGLYSKALQQVEIVDP-TFMSTPQRLITYDN
VL2_HPV43 DTFVI----HSDPTTSTPIPGTAPR--PRLGLYSKALQQVEIVDP-TFLSSPQRLITYDN
VL2_HPV28 ETFASPG-TGNEPISSTPVPGVSRIAGPRL--YAKAVTQVKVTDP-AFLSRPTSLVTFDN
VL2_HPV03 ETFASPG-TGTEPISSTPVPGVSRIAGPRL--YSKAVTQVKVTDP-AFLTRPRSLMTFDN
VL2_HPV10 DTFASSG-TGTEPISSTPVPGVSRIAGPRL--YSRANTQVKVSDP-AFLSRPSSLLTFDN
VL2_HPV29 DTFATSG-TGLEPISSTPVPGVSRVAGPRL--YGKALTQVRVSDP-AFLTQPSSFVTFDN
VL2_HPV18 QTFASSG-TGEEPISSTPLPTVRRVAGPRL--YSRAYQQVSVANP-EFLTRPSSLITYDN
VL2_HPV45 QTFASSG-SGTEPISSTPLPTVRRVRGPRL--YSRANQQVRVSTS-QFLTHPSSLVTFDN
VL2_HPV39 EVFATHG-TGTEPISSTPTPGISRVAGPRL--YSRAHQQVRVSNF-DFVTHPSSFVTFDN
VL2_HPVME QVFATHG-TGTEPISSTPIPGVSRVAGPRL--YSRAHQQVRVSNF-DFVTHPSSFVTFDN
VL2_HPV70 QVFASHG-TGTEPISSTPVPGVSRVAGPRL--YSRAYHQVRVNNF-DFVTRPSSFVTFDN
VL2_HPV30 QTFAVHG-TGTEPISSTPIPGLRRIAAPRL--YQRAFQQVKVTDP-TFLTKPETLITVDN
VL2_HPV53 QTFAVQG-TGNEPISSTPIPGLRRIAAPRL--YKKAFQQVKVTDP-AFLHKPETLINVDN
VL2_HPV56 QTFAVHG-SGTEPISSTPIPGFRRIAAPRL--YRKAFQQVKVTDP-AFLDRPATLVSADN
VL2_HPV66 QTFAIHG-TGNEPISSTPIPGFRRLAAPRL--YSRAFQQVRVTDP-AFLDNPTTLISADN
VL2_HPV26 EVFASTNGTGLEPISSTPIPGIQRVSAPRL--YSKAYQQVKVTDP-NFIGNPSTFVTFDN
VL2_HPV69 EVFASNTSSGSKPISSTPIPGIRRVAAPRL--YSKAYQQVKVTDP-NFISKPSTFITFDN
VL2_HPV51 EVFASNVSTGTEPISSTPTPGVSRIAAPRL--YSKSYTQVKVTNP-DFISKPSTFVTFNN
VL2_HPV82 EVFASNVTTGKEPISSTPTPGVRRIAAPRL--YSRAFSQVKVTNP-DFISKPSTFVTFDN
VL2_HPV27 QTFATSGGSGQEPISSTPLPGVRRVAGPRL--YSRANQQVQVRDP-AFLERPADLVTFDN
VL2_HPV2A QTFATSGGSGTEPISSTPLPGVRRVAGPRL--YSRANQQVQVRDP-AFLARPADLVTFDN
VL2_HPV57 QTFATSGGDGGEPISSTPVPGVRRVAGPRL--YSRANQQVRVRDP-AFIDRPADLVTFDN
VL2_HPV61 HTFATSEGPGS----STPLPGIRRLARPRLNLYSKANQQIKVANP-TFMSDPASLITYDN
VL2_HPV62 VTFASNAGTGSEPISSTPLPGVRRVAGPRLGLYTKATQQVPVADP-AFVSRPASFATFDN
VL2_PAPVE TLFAEPR------TSTPEV-PIKRSRGIFNWFSRRYYTQVPVEDPDEI--AAAGSYVFEN
VL2_PAPVD TLFGQPK------TSTPEG-PINRGRGIFNWFNRTYYTQVPVEDPDEI--AAAGSYVFEN
VL2_BPV1 TYFGSPR------TSTPRS-IASKSRGILNWFSKRYYTQVPTEDPE-----VFSSQTFAN
VL2_BPV2 TFFGSPR------TSTPRN-LPQTARGILNWFSKRYYTQIPTEDPD-----VFSSQTFSN
VL2_BPV5 QLFSGPK------TSTPETDAVTKVRGRANWFSKRYYTQTSVRDPTFIQEPQTYFYGFEN
VL2_CRPVK RHPPRSEGDFRETSFSTSTPIPDRSALRSINVASRRYQQVQVENP-AFLNRPRELVQFEN
VL2_HPV41 DTTILAPGEEETAFVTSTPERVPIQERLPIRPYGRQYQQVRVTDP-EFLDSAAVLVSLEN
VL2_BPV3 DNPTYTDD---SLSLIFQQDVDEVSAAPMAEFQDIVTLSRPVVYER-EGLVRVSRLGQR-
VL2_BPV4 DNPAYVDD---SLSLIFQQDLDEVSAAPDADFQDIVKLSRPVFTTK-EGLVRLSRLGQR-
VL2_HPV05 DNPVF-EE---EVTNIFENDLDVFEEPPDRDFLDVRELGRPQYSTTPAGYVRVSRLGTR-
VL2_HPV5B DNPVF-EE---EVTNIFENDLDVFEEPPDRDFLDVRELRRPQYSTTPAGYVRVSRLGTR-
VL2_HPV36 ENPAF-EE---EVTNIFEHDVDAFEEPPDRDFLDVQRLGRPQYSTTPAGYVRVSRLGTR-
VL2_HPV47 DNPAF-EE---EVTNIFEQDVNSFEEPPDRDFLDIKQLGRPQYSTTPAGYIRVSRLGTR-
VL2_HPV12 DNPVF-EE---DITNIFEQDLETFEEPPDRDFLDIKKLSRPQYSTTPAGYVRVSRLGTR-
VL2_HPV08 DNPVF-EE---EVTNIFEQDVDMVEEPPDRDFLDVRQLGRPQYSTTPAGYVRVSRLGTR-
VL2_HPV14 DNPAF-EE---EVTQIFEQDIEDFNEPPDRDFLDVQRLGRPQYSETPAGYLRVSRLGQR-
VL2_HPV21 DNPAF-EE---EVTQIFEQDIDTFNEPPDRDFLDIKTLGRPQYSETPAGYVRVSRLGKR-
VL2_HPV20 DNPVF-EE---EVTQIFEQDLDTFNEPPDRDFLDVQSLGRPQYSETPAGYVRVSRAGQR-
VL2_HPV19 DNPAF-EE---EVTQIFEQDLDNFREPPNRDFLDVQTLGRPQYSETPSGYIRVSRLGQR-
VL2_HPV25 DNPVF-ED---EVTQIFEQDLNDFQEPPDRDFLDIRSLGRPQYSETPAGYVRVSRLGQR-
VL2_HPV24 ENPAF-EE---EVTQVFEQDLAGFVEPPNRDFLDIAELGRPRFSETREGYVRLSRLGRR-
VL2_HPV49 DNPVF-EE---EVTQIFERDVAAVEEPPDRDFLDIAKLSRPLYSETPQGYVRVSRLGNR-
VL2_HPV17 DNPAF-EE---EVTQLFERDIEAVEEPPDRQFLDVVRLGRPTYSETPQGYLRVSRLGRR-
VL2_HPV37 DNPAF-EE---EVTQIFERDLEAVEEPPDRQFLDVIRLGRPTVAETPQAYLRVSRLGRR-
VL2_HPV15 DNPTF-EE---EVTQTFERDVEAFEEPPDRQFLDVVRLGRPTYSETPQGYVRVSRLGRR-
VL2_HPV09 DNPAF-ED---EVTQIFERDLSTVEEPPDRQFLDVQRLSRPLYTETPQGYVRVSRLGRR-
VL2_HPV38 DNPVF-DE---QVTQIFEQDIADFEEPPDRQFLDVVKLGRPTLTESAEGYVRVSRLGRR-
VL2_HPV22 DNPVF-DE---EVTQIFERDVAAVEEPPDRDFLDIERLGRPILTETAEGRVRVSRLGQR-
VL2_HPV23 DNPVF-DE---EVTQIFERDVAEVEEPPDRDFLDIDRLGRPLLTESTEGRIRLSRLGQR-
VL2_HPV1 PAFEPELD---EVSIIFQRDLDALAQTPVPEFRDVVYLSKPTFSREPGGRLRVSRLGKS-
VL2_HPV63 PAFE---R---SVSLIFEQDLEDILNAPDQDFRDIVYLSRPTYSRAPDGRMRLSRLGRR-
VL2_COPV6 PAFD---E---SVDLIFERDVAEITAAPHADFTDITKLTKPAYHRGPSGHVRVSRLGHR-
VL2_HPV04 ENPAF-DA---DITQTFERDLEQVAAAPDADFADIVTIGRPRFSETDAGQIRVSRLGRR-
VL2_HPV65 ENPAF-DA---DITQVFERDLEQVAAAPDADFADIVRIGRPRFSQTDTGQIRISRLGRR-
VL2_HPV60 ENPAFFND---EVTMQFEQDLQEVAAAPDQDFADVRELGRARFSETSAGTIRVSRLGTK-
VL2_HPV48 ENPAF-DP---DISIQFQRDVNSLEAAPNPAFADIAYLSRPHMSATSEGLVRVSRIGSR-
VL2_HPV50 RNPAF-DP---DVSLYFERDLEGLRAAPLQEFADVVYLGRPRVSSTSEGTIRVSRLGTR-
VL2_HPV16 PAYEGIDV---DNTLYFSSNDNSINIAPDPDFLDIVALHRPALTS-RRTGIRYSRIGNK-
VL2_HPV35 PAYEGLNP---DTTLQFEHED--ISLAPDPDFMDIIALHRPALTS-RKGTIRYSRVGNK-
VL2_HPV31 PAYETVNA---EESLYFSNTS--HNIAPDPDFLDIIALHRPALTS-RRNTVRYSRLGNK-
VL2_HPV33 PAFESFDP---EDTLQFQHSD--ISPAPDPDFLDIIALHRPAITS-RRHTVRFSRVGQK-
VL2_HPV58 PAFEGFNP---EDTLQFQHSD--ISPAPDPDFLDIVALHRPALTS-RRGTVRYSRVGQK-
VL2_HPV67 PAFQPTEP---DETLYFQHQD--ISPAPDPDFLDIVALHRPALTS-RKGTIRFSRLGSK-
VL2_HPV52 PVFEGVDT---DETIIFDRSQ--LLPAPDPDFLDIIALHRPALTS-RRGTVRFSRLGNK-
VL2_HPV34 PAFEGLQ----DTTLEFQHSD--LHNAPDSDFLDIVKLHRPALTA-RKTGIRVSRLGQR-
VL2_RHPV1 PAYEGVD----DATLQFSHSD--IHQPPDPDFLDIVALHRPALTS-RKGTVRFSRLGQR-
VL2_HPV32 PAYEGPA----EGTLEFEHPT--IHEAPDSDFMDIIALHRPVLSA-RQGTVRVSRIGQR-
VL2_HPV42 PAYEGLT----EDTLVFEHPS--IHTAPDPDFMDIVALHRPMLSS-KQGSVRVSRIGQR-
VL2_HPV54 PVYEGNP----DVTLHFEQPT--IHNAPDPAFMDIFALHRPALTT-RRGVVRYSRVGDR-
VL2_HPV6A PVYEGED-----VSVQFSHDS--IHNAPDEAFMDIIRLHRPAIAS-RRGLVRYSRIGQR-
VL2_HPV6B PVYEGED-----VSVQFSHDS--IHNAPDEAFMDIIRLHRPAIAS-RRGLVRYSRIGQR-
VL2_HPV11 PVYEGED-----VSLQFTHES--IHNAPDEAFMDIIRLHRPAITS-RRGLVRFSRIGQR-
VL2_HPV44 PAYEGED-----VTLHFAHNT--IHEPPDDAFMDIIRLHRPAIQS-RRGRVRFSRIGQR-
VL2_HPV55 PAYEGED-----VSLEFAHNT--IHQPPDDAFMDIIRLHRPAIQS-RRGRVRFSRIGQR-
VL2_HPV13 PTYEGED-----ISLQFAHNT--IHEPPDEAFMDIIRLHRPAITS-RRGLVRFSRIGQR-
VL2_PCPV1 PAYEGED-----ISLQFQHNT--IHNPPDDAFMDIVRLHRPAITS-RRGIVRFSRIGQR-
VL2_HPV40 PVFENVD-----DTLQFEQPS--IHDAPDPAFMDIITLHRPALTS-RRGVIRFSRVGQR-
VL2_HPV07 PVFDNIE-----DTLHFEQPS--IHNAPDPAFMDIITLHRPALTS-RRGVVRFSRVGQR-
VL2_HPV43 PVFEDPN-----ATLTFEQPT--VHEAPDSRFMDIVTLHRPALTS-RRGIVRFSRVGAR-
VL2_HPV28 PAFEPGD-----ETIIFERPY-PPSQVPDPDFMDIIRLHRPALTS-RRGTVRFSRLGTK-
VL2_HPV03 PVFEPED-----ETIIFERPY-SPSQVPDSDFLDILRLHRPALTS-RRGTVRYSRVGQK-
VL2_HPV10 PVFEPED-----ETIIFERPY-SPSRVPDPDFLDIVRLHRPALTS-RRGTVRFSRLGQK-
VL2_HPV29 PVYDPED-----ETIIFERPS-PGTRVPDPDFMDIVKLHRPALTS-RRGTVRFSRVGQK-
VL2_HPV18 PAFEPVD-----TTLTFD----PRSDVPDSDFMDIIRLHRPALTS-RRGTVRFSRLGQR-
VL2_HPV45 PAYEPLD-----TTLSFE----PTSNVPDSDFMDIIRLHRPALSS-RRGTVRFSRLGQR-
VL2_HPV39 PAFEPVD-----TTLTYE----AADIAPDPDFLDIVRLHRPALTS-RKGTVRFSRLGKK-
VL2_HPVME PAFEPVD-----TTLTYE----PADIAPDPDFLDIVRLHRPALTS-RRGTVRFSRVGKK-
VL2_HPV70 PAFEPGD-----TSLTFE----PADTAPDPDFLDIVRLHRPALTS-RRGTVRFSRLGKK-
VL2_HPV30 PVFEDAD-----TTLTFS----PSGVAPDPDFLDIVALHRPAFTT-RRGGVRFSRLGTK-
VL2_HPV53 PIFQNAD-----TTLTFS----PSGVAPDPDFLDIVALHRPAFTT-RRGGVRFSRLGTK-
VL2_HPV56 PLFEGTD-----TSLAFS----PSGVAPDPDFMNIVALHRPAFTT-RRGGVRFSRLGRK-
VL2_HPV66 PVFEGAD-----TTLTFS----PSGVAPDPDFMDIVALHRPAFTT-RRTGVRFSRLGKK-
VL2_HPV26 PAYEPID-----ETLTYAS---SSTVAPDPDFLDIIALHRPALTS-RKGTVRYSRLGQK-
VL2_HPV69 PAYEPMD-----TTLTFSA---DSHVAPDPDFLDIIALHRPALTS-RRGTVRFSRLGQK-
VL2_HPV51 PAFEPID-----TSITFEE---PDAVAPDPDFLDIITLHRPALTS-RRGTVRFSRLGQK-
VL2_HPV82 PAFEPAD-----TSLSFEE---PTDVAPDPDFLDIIKLHRPALTS-RRGTVRFSRLGQK-
VL2_HPV27 PVYDP-E-----ETIIFQHP--DFHEPPDPDFLDIVALHRPALTS-RQGTVRFSRLGRR-
VL2_HPV2A PVYDP-E-----ETIIFQHP--DLHEPPDPDFLDIVALHRPALTS-RRGTVRFSRLGRR-
VL2_HPV57 PVYDP-E-----ETIIFQHP--GLHEPPDPDFLDIVSLHRPALTSTRQGTVRFSRLGRR-
VL2_HPV61 PIFDP-E-----ETIIFEHP--SIYTPPDPDFLDIVSLHRPALTS-RQGTVRFSRLGQR-
VL2_HPV62 PIYDP-E-----ETIIFEHP--SIYTPPDPDFLDIVTLHRPALTS-RQGTVRLSRVGQR-
VL2_PAPVE PVYDSKAF---KPAQQPDITL--------QDEASVTGRDAARLLAGPSGRIGWSRITRP-
VL2_PAPVD ALYDSKAY---KHEQQPWLSRP-------QDAPEFDFQDAVRLLQGPSGRVGWSRIIRP-
VL2_BPV1 PLYEAEP----------------------------------AVLKGPSGRVGLSQVYKP-
VL2_BPV2 PLYDPEP----------------------------------AVLKGPSGRVGLSQVYRP-
VL2_BPV5 PAYEPDPF---EDSFDVQLASPSEPVQ--PELRDITHVSAARTFRGESGRVGISRLGQK-
VL2_CRPVK TFDNPAFVDDEQLSLLFEQDLDTVVATPDPAFQDVVRLSRPSFTQSRAGRVRVSRLGRT-
VL2_HPV41 PVFDA------DITLTFEDDL-QQALRSDTDLRDVRRLSRPYYQR-RTTGLRVSRLGQRR
: *:
VL2_BPV3 GTIRTRSGLRIGGHVHYYTDISPIRPVE----DIEMRTLGEVSGDS-------VIMQPLA
VL2_BPV4 GTIKTRMACK--------------------------------------------------
VL2_HPV05 ATIRTRSGAQIGSQVHFYRDLSSINTED----PIELQLLGQHSGDA-------TIVHGPV
VL2_HPV5B ATIRTRSGAQIGSQVHFYRDLSSINTED----PIELQLLGQHSGDA-------TIVQGPV
VL2_HPV36 ATIRTRSGAQIGSQVHFYRDLSSINTED----PIELQLLGQHSGDA-------SIVQGPV
VL2_HPV47 GTIRTRSGAQIGSQVHFYRDLSSINTED----PIELQLLGQHSGDA-------TIVQGPV
VL2_HPV12 GTIRTRSGAQIGSQVHFYRDLSSIDSED----PIELQLLGQHSGDA-------TIVQGTV
VL2_HPV08 GTIRTRSGAQIGSQVHFYRDLSSINTED----PIELQLLGQHSGDS-------TIVQGPV
VL2_HPV14 RTIRTRSGAQIGSQVHFYRDLSSINTED----PIELQLLGQHSGDA-------TIVQGPV
VL2_HPV21 GTIRTRSGTQIGSQVHFYRDLSTINTED----PIELQLLGEHSGDA-------TIVQGPV
VL2_HPV20 RTIRTRSGAQIGSQVHFYRDLSSIDTED----PIELQLLGQHSGDA-------TIVQGPV
VL2_HPV19 RTIRTRSGAQIGSQVHFYRDLSTIDSED----PIELQLLGQHSGDA-------SIVQGNT
VL2_HPV25 RTIRTRSGAQIGSQVHFYRDLSSINTED----PIELQLLGQHSGDA-------TIVQGLT
VL2_HPV24 ATIRTRAGTQIGAQVHFYKDLSSINTEA----PIELDLLGQHSGDA-------TIVHGTV
VL2_HPV49 ASIRTRSGATVGAQVHFYTDLSTIDAEE----SIELSLLGEHSGDA-------TIVQGPV
VL2_HPV17 ASIRTRSGAQVGAQVHFYRDVSTIDSD-----ALEMQLLGEHSGDT-------TIVQGPV
VL2_HPV37 ATIRTRSGAQVGAQVHFYRDLSTIDSD-----ALEMQLLGEHSGDT-------TIVQGPV
VL2_HPV15 ATIRTRSGAQVGAQVHFYRDLSTIDSE-----ALEMQLLGEHSGDS-------TIVQAPM
VL2_HPV09 ATIRTRSGAQVGAQVHFYRDLSTINTEE----PIEMQLLGEHSGDS-------TIVQGPV
VL2_HPV38 GTIRTRSGTQIGSQVHFYRDLSTINTEE----PLEMQLLGEHSGDA-------SIVQGPV
VL2_HPV22 ASLSTRSGARVGARVHFFTDISTINAEE----PIELELLGEHSGDS-------SVVQEPF
VL2_HPV23 ASIQTRSGTRVGSRVHFYTDLSTINTEE----PIELELLGEHSGDA-------SVIEEPL
VL2_HPV1 STIRTRLGTAIGARTHFFYDLSSIAPED----SIELLPLGEHSQTT-------VISSNLG
VL2_HPV63 ATISTRSGVTIGAQSHFYMDISSISSND----GIELQTLGEASGET-------VVQSSLA
VL2_COPV6 ANIKTRSGLTIGPQSHFYYDVSSIDPAE----SFELQALGNVSSAE-------QTGEAVI
VL2_HPV04 GTIKTRSGVQIGQAVHFYYDLSTIDTAD----AIELSTLGQHSGEQ-------SIVDAMI
VL2_HPV65 GTIKTRSGLQIGQAVHFYYDLSTIDTAD----AIELSTLGQHSGEQ-------SIVDAMI
VL2_HPV60 GTMKTRSGLTIGQKVHFYFDISDIPAAE----TIQLRTLGESSHDF-------SAVDNIT
VL2_HPV48 AVLQTRSGLTIGPKVHYYMDLSAISTE-----AIELQTFADSGHVH-------TIVDDFL
VL2_HPV50 AALTTRSGLSVGPQVHFYMDLSDIPPED----SIELHTLNVTPQTS-------TIVDDIL
VL2_HPV16 QTLRTRSGKSIGAKVHYYYDLSTIDP-A---EEIELQTITPSTYTTTSHAASPTSINNGL
VL2_HPV35 RTMHTRSGKAIGARVHYYQDLSSI---T---EDIELQPLQHVP-SSLPHTTVSTSLNDGM
VL2_HPV31 QTLRTRSGATIGARVHYYYDISSINPAG---ESIEMQPLGASA-------TTTSTLNDGL
VL2_HPV33 ATLKTRSGKQIGARIHYYQDLSPIVPLD---HTVPNEQ-YELQPLH-DTSTSSYSINDGL
VL2_HPV58 ATLRTRSGKQIGAKVHYYQDLSPIQPVQ---EQVQQQQQFELQSL--NTSVSPYSINDGL
VL2_HPV67 ATMKTRSGKQIGARVHYYQDLSPIVPAD---S-------IELQPLSRPVSSASHSINDGL
VL2_HPV52 ATLRTRSGKQIGARVHYYHDISPIQPAE---V----QEDIELQPLL-PQSVSPYTINDGL
VL2_HPV34 ATMFTRSGKRIGGRVHFYHDLSPIP--T---ENIELQPLLPSASAT---VTDANGINDGL
VL2_RHPV1 ATLTTRSGKRIGAKVHFYHDLSPIAPAE---S----------------IELQPLSSQGEL
VL2_HPV32 ASLQTRSGARIGSRVHFFHDISPITRPS---EAIELQPLGSSSTAV--STTASSAINDGL
VL2_HPV42 LSMQTRRGTRFGSRVHFFHDLSPITHSS---ETIELQPLSAS------SVSAASNINDGL
VL2_HPV54 ATLHTRSGLQLKPRVHFFQDLSPIAHVP---EEIELHPLISAN-----NTSINNGLYSDI
VL2_HPV6A GSMHTRSGKHIGARIHYFYDISPIAQAA---EEIEMHPLVAAQDD--------------T
VL2_HPV6B GSMHTRSGKHIGARIHYFYDISPIAQAA---EEIEMHPLVAAQDD--------------T
VL2_HPV11 GSMYTRSGQHIGARIHYFQDISPVTQAA---EEIELHPLVAAEND--------------T
VL2_HPV44 GSMYTRSGKHIGGRIHFYQDISPISAAA---EEIELHPLVATAQD------------SGL
VL2_HPV55 GSMYTRSGKHIGGRIHFYQDISPISAAA---EEIELHPLVATAHD------------TSL
VL2_HPV13 GSMYTRSGKHIGGRVHFFKDISPISAAA---EEIELHPLVAAAQDH-----------SGL
VL2_PCPV1 GSMYTRSGKHIGGRVHFYTDISPISAAA---EELEMQPLVAAAQDD-----------SGL
VL2_HPV40 GTMYTRRGTRIGGRVHFFRDISPIGAA----DDIELHPLVASAPHTL--------ETPHT
VL2_HPV07 GTMYTRRGTRIGGRVHFFKDISPIASS----EEIELHPLVASPNNS------------DL
VL2_HPV43 GTMYTRSGIRIGGRVHFFTDISSIPTE----ESIELQPLGRS----------------QS
VL2_HPV28 LSMHTRSGKGIGARVHYYQDLSPIGPT----EDIEMEPLLAPAE---------NAAGDSI
VL2_HPV03 LSMRTRSGKGLGARVHYYQDLSPIGPT----EDIEMEPLIAPAS---------ASAYDSL
VL2_HPV10 FSMRTRSGKGIGARVHYYQDLSPIAPI----EDIEMEPLLAPA------------ASDTI
VL2_HPV29 FSMRTRSGTNIGARVHYYHDLSPILPT----EDIELEPLLPPAD---------PTAEESL
VL2_HPV18 ATMFTRSGTQIGARVHFYHDISPIAPS---PEYIELQPLVS------------ATEDNDL
VL2_HPV45 ATMFTRSGKQIGGRVHFYHDISPIAAT----EEIELQPLIS------------ATNDSDL
VL2_HPV39 ATMVTRRGTQIGAQVHYYHDISSIAPA----ESIELQPLVHAE-P--------SDASDAL
VL2_HPVME ATMFTRRGTQIGAQVHYYHDISGIAPA----DSIELQPLVAPE-Q--------SDPMDTL
VL2_HPV70 ATMFTRRGTQIGAQVHYYHDISNITAT----EDIEMQPLLT------------SESTDGL
VL2_HPV30 ATMRTRSGKQIGARVHYYYDVSPIAHT----EEIEMQPLLSA-----------NNSFDGL
VL2_HPV53 ATMRTRSGKQIGARVHYYYDVSPITQT----EEIEMQPLLST-----------DNTFDGL
VL2_HPV56 ATIQTRRGTQIGARVHYYYDISPIAQA----EEIEMQPLLSA-----------NNSFDGL
VL2_HPV66 ATMQTRRGTQIGARVHYYYDISPIAQA----DEIEMQPLLST-----------DNSFDGL
VL2_HPV26 ATMKTRSGKQIGATVHYYHDISPIQSFAEH-EEIELQPLHTSTH-----------SSAPL
VL2_HPV69 ATLKTRSGKQIGAKVHYYHDISPIH--ATE-EAIELQPLITSEQ-----------HSTPL
VL2_HPV51 ATMRTRSGKQIGARVHYYHDISRIA---PA-DELEMQPLLSPS-------------NNYS
VL2_HPV82 ATIRTRSGKQIGARGHYYHDISSIA---PA-EELEMQPLLSPST------------NNYS
VL2_HPV27 ATLRTRSGKQIGARVHFYHDISPVVPDE-----LEMEPLLPPAS---------TVGSDVL
VL2_HPV2A ATLRTRSGKQIGARVHFYHDISPIGTEE-----LEMEPLLPPAS---------TDNTDML
VL2_HPV57 ATLRTRSGKQIGARVHFYHDISPVAPEE-----LEMEPLLPPTS-------------EPL
VL2_HPV61 ATLRTRSGRRIGARVHFYHDISPIPSDA-----VELQPLVPS------------SSPSIT
VL2_HPV62 ASLRTRSGKRIGARVHFYHDISPIPSTTTG--DIELQPLLPSGS----------SSADTL
VL2_PAPVE TSLGTRSGVRVGPLYHLRSSFSTIHSP-ETIELIPTVLEDDTEVLTGVPER---------
VL2_PAPVD TSIGTRSGVRVGPLYHLRQSFSTIDEP-ETIELIPSTVDEE-EVLTGVPESAEGP-----
VL2_BPV1 DTLTTRSGTEVGPQLHVRYSLSTIH---EDVEAIPYTVDENTQGLAFVPLHEE-------
VL2_BPV2 DFIETRGGGQVGPQLHVRYSLSTIT---EDVEAIPIAVDEDTQGLAFIPLHEE-------
VL2_BPV5 SSIQTRSGVTVGGRVHFRYSLSTIEDAIEDAGEIELQVTNGSQGPSGSLQHTAETILSEG
VL2_CRPVK LTMQTRSGKAFGPAKHFYYELSSIAEGP------EPDILIPESEQE--------------
VL2_HPV41 GTISTRSGVQVGSAAHFFQDISPIGQAIEPIDAIELDVLGEQSGEG------TIVRGDPT
: ** .
VL2_BPV3 ESTFVDSGDVLNEGNIEF----------------PDSTLEDDYNEDFSRARLEITTSARS
VL2_BPV4 ------------------------------------------------------------
VL2_HPV05 ESTFIDMDISE-NPLSES------------IEAYSHDLLLDETVEDFSGSQLVIG-NRRS
VL2_HPV5B ESTFIDMDISE-NPLSES------------IEAYSHDLLLDEAVEDFSGSQLVIG-NRRS
VL2_HPV36 ESTFIDVNVSE-NPLSES------------VEAFSDDLLLDEAVEDFSGSQLVIG-NRRS
VL2_HPV47 ESTFIDMDIAE-NPLSET------------IDASSNDLLLDETVEDFSGSQLVIG-NRRS
VL2_HPV12 ESTFVDMDIAE-DPLSES------------IEAHSDDLLLDEAVEDFSGSQLVIG-NRRS
VL2_HPV08 ESTFVNVDISE-NPLSES------------IQAFSDDLLLDETVEDFSGSQLVIG-NRRS
VL2_HPV14 ESTFVDINVDE-NPLSED------------FSAHSDDLLLDEANEDFSGSQLVVG-NRRS
VL2_HPV21 ESTFIDINVDE-NPLSED------------FSAHSDDLLLDEANEDFSGSQLVVG-GRRS
VL2_HPV20 ESTFVDINVDE-NPLSE-------------ISAYSDDLLLDEANEDFSGSQLVVG-GRRS
VL2_HPV19 ESTFININIDE-NPLAEDYS----------ITANSEDLLLDEAQEDFSGSQLVVG-GRRS
VL2_HPV25 ESTFVDVNVDE-NPLAEDFS----------ISAHSDDLLLDEANEDFSGSQLVVG-GRRS
VL2_HPV24 ESTFIDTNIEE-NPLAEQMELEIDTY----PEAHSFDALLDEATDDFSGSQLVIG-NRRS
VL2_HPV49 ESSFVDLNVQE-LPQVIEVDPE--------PTFHSDDLLLDEQNEDFSGSQLVYG-SGRR
VL2_HPV17 ESSFVDINIDEPGPLNVGIQESPLADTIE-EDFNSADLLLEDAVDDFSGSQLVFGNPRRS
VL2_HPV37 ESSFVDINIDEPGPLNIGQQESTMAD--D-TDFNSADLLLEDAVEDFSGSQLVFGTSRRS
VL2_HPV15 ESSFIDINIDEPDSLHVGLQDSTEAD--D-IDYNSADLLLEDNIEDFSGSHLVFGNTRRS
VL2_HPV09 ESSIVDVNIDEPDGLEVGRQETPSVE--D-VDFNSEDLLLDEGVEDFSGSQLVVG-TRRS
VL2_HPV38 ESTLVDVNVTE---VPEGVLTETSMD--P-DTFNSEDLLLDDAIEDFSGSQLVVGTPRRS
VL2_HPV22 ESTILDVNIDNIPESLDTNIAETSVD------YDSADLLLDNGVEDFSRSQLVIGPSDRS
VL2_HPV23 QSTVIDMNLDDVEAIQDT--IDTADD------YNSADLLLDNAIEEFNNSQLVFGTSDRS
VL2_HPV1 -------DTAFIQGETAEDDLEVISLETP--QLYSEEELLDTNESVGENLQLTIT---NS
VL2_HPV63 ASDPIEAEHSFIEPAPSIDSYDIVSLQS---ETYSDEHLLDMYEPVGSSLQLQIS---DV
VL2_COPV6 --------------SSGTGDFEIISLEDSILESYNDEDLIDVFEDVARDLHLLVG---ER
VL2_HPV04 ESSLIDPFEMPDPTFTEE------------------QQLLDPLTEDFSQSHLVLTSSRRG
VL2_HPV65 ESSFVDPFETPDPTYTEE------------------QQLLDPLTEDFSNSHLVLTSSRRG
VL2_HPV60 ESTYINLTETTNEGLIPD------------------NILEDEFTENFNNAQLIFATIDEG
VL2_HPV48 SVTALDDPANIADINYTE------------------DDLLDPLLENFNNSHITVQGVDEE
VL2_HPV50 ATTTFDDPANSLFTQFNE------------------DVLTDDVEHNFTESHLVIPATDEE
VL2_HPV16 YDIYADDF--------ITDT--------------STTPVPSVPSTS-LSGYIPANTTIPF
VL2_HPV35 FDIYAPID--------TEEDI-----------IFSASSNNTLYTTS-NTAYVPSNTTIPL
VL2_HPV31 YDIYADTD--------FTVDTPA---------THNVSPSTAVQSTSAVSAYVPTNTTVPL
VL2_HPV33 YDVYADDV--------DNVH------------TPMQHSYSTFATTR------TSNVSIPL
VL2_HPV58 YDIYADDA--------DTIHD-F---------QSPLHSHTSFATTR------TSNVSIPL
VL2_HPV67 YDVYMDPD--------TPFP--------------QPSISYSLHSPQ------TTNVTVPL
VL2_HPV52 YDVYADSL--------QQPT----------------FHLPSTLSTH------NNTFTVPI
VL2_HPV34 YDVLLDNN--------VDITEVE---------TPTGTNTQSVFASE--ISTTTANTTIPL
VL2_RHPV1 YDIYADVD--------GQED--------------AAAVANTPLNSNSSGIASPWNTTVPL
VL2_HPV32 FDVYVDP---DIPPSHALPPLR-----------SPTHVSTVSLTSLGSVPAQTANTTVPL
VL2_HPV42 FDIYVDTSDVNVTNTTSSIPMHG---------FATPRLSTTSFPTLPSMSTHSANTTIPF
VL2_HPV54 YDVYADT---DFADTGGFSSST------------VSHSSVQTALQTTSIPSQYGNTTVPL
VL2_HPV6A FDIYAESFE------PDINPTQH---------PVTNISDTYLTSTPNTVTQPWGNTTVPL
VL2_HPV6B FDIYAESFE------PGINPTQH---------PVTNISDTYLTSTPNTVTQPWGNTTVPL
VL2_HPV11 FDIYAEPFD------PIPDPVQH---------SVTQ---SYLTSTPNTLSQSWGNTTVPL
VL2_HPV44 FDIYAEP-D------PDVTEEPV---------SLSFST-STPFQRSSVSATPWGNTTVPL
VL2_HPV55 FDIYAEP-D------PDFTEEPV---------PLSFST-STPFQRSSVSATPWGNTTVPL
VL2_HPV13 FDIYAEP-D------PDPVAVNT---------SGSLSSASTPFAQSSLSSAPWGNTTVPL
VL2_PCPV1 FDVYVDP-T------PGPVAVQN---------MSYPSS--TSFVRSSMFTTKWGNTTVPL
VL2_HPV40 LETPLDTTDA----LFDVYADMD---------TIDDDAAYATFSLHPADSTRISNTSIPL
VL2_HPV07 FDVYADIDD------IDENILYS---------TIDNNTPTSTYSLYPGNSTRIANTSIPL
VL2_HPV43 FPTVSDTSD-----LYDIYADEN---------LLNNDISFTDTHVSLQNSTKVVNTAVPL
VL2_HPV28 YDVFADVEDADIAFTGRSRSA------------TSSRGYTTVSPLSSTLTTKYGNVTIPF
VL2_HPV03 YDVYADVDDADIGFTSGGRSD------------TLSRGRATVSPLSSTLSTKYGNVTIPF
VL2_HPV10 YDIFADVDDGDVAFTEGYRST------------TQSRGYNTTSPLSSTLSTKYGNVTIPF
VL2_HPV29 YDIYADVDEADMAFTGGGRGA------------TTYGGRITPSVFSSTLSTRYGNVTIPF
VL2_HPV18 FDIYADDMDPAVPVPSRSTTS--------------FAFFKYSPTISS--ASSYSNVTVPL
VL2_HPV45 FDVYADFPPPASTTPSTIHKS--------------FTYPKYSLTMPSTAASSYSNVTVPL
VL2_HPV39 FDIYA-DVDNNTYLDTAFNNTRD---------SGTTYNTGSLPSVASSASTKYANTTIPF
VL2_HPVME YDIYAPDTDNTTVLDTAFHNA-----------TFTSRSHISVPSLASTASTTYANTTIPI
VL2_HPV70 YDIYADADIDNAMLHTTSHTG-----------STGPRSHLSFPSIPSTVSTKYSNTTIPF
VL2_HPV30 YDIYA-NLDDEAPVSSHLSIA-------------TPS-RLPTNTVPLSFSSQTTNVTIPL
VL2_HPV53 YDIYA-NIDDEAPVSSRFSIA-------------TPS-RLPTNTVPLSFSGSTSNVTIPF
VL2_HPV56 YDIYA-NIDDEAPGLSSQSVA-------------TPSAHLPIKPSTLSFASNTTNVTAPL
VL2_HPV66 YDIYA-NIDDEAPISFRQSGA-------------TPSAQLPIKPSTLSFASNTANVTAPL
VL2_HPV26 FDIYADPDTV------PSIHTPRMSY-----SPTTLPVPRYASNVFSSINTSTTNVTVPL
VL2_HPV69 FDVYADADPA------PTFTFP---------STTPTTIPRFSSTIFSTTSSAPLNVTIPL
VL2_HPV51 YDIYADLDEAETGFIQPTHTTPM----------SHSSLSRQLPSLSSSMSSSYANVTIPF
VL2_HPV82 YDIYADLNEAETGFMQPTQTTPML-------RSPFSPLSTQLPSLSSSVSSSYANVTIPF
VL2_HPV27 YDVYADPDVLQPLDDYYPAP-------------RG--SLANTTVSASSASTLRGSTTAPL
VL2_HPV2A YDVYADSDVLQPLLDELPAAP------------RGSLSLADTAVSATSASTLRGSTTVPL
VL2_HPV57 YDIYAESDFLQPLDSDVPAAP------------RGTLSLADTAVSASTASTLRGATTVPL
VL2_HPV61 YDIYADPEVLDLPAQHTQPT----------------LTVQGPSLSAASASTKVHNVTVPL
VL2_HPV62 YDVYADDQHLDAVLQSVPSMS------------SRPLVPSNATISATSVASSHTNVTVPL
VL2_PAPVE DTGFDDVDLDSIASDSPLLPER---------HHLAF-GARRSHIPIVARPGVQTGTVIDT
VL2_PAPVD DAEYSDIDLQSIGSDEPLLGTGII-------YPLVG-GGQIFLCMHRAPVGWSSGTYINH
VL2_BPV1 QAGFEEIELDDFSETHRLLPQNTS-------STPVGSGVRRSLIPTQEFSATRPTGVVTY
VL2_BPV2 PGDFEEIELDDLGEEHALLPK-SY-------TAPIGSGVRRALIPGQGFSATRPTGVVTY
VL2_BPV5 HDAYVDVDMDSVGSLYSDIDLIDE-------HSETPHGILVFHDEAETDVVPVIDVSYVR
VL2_CRPVK -TSFTDATSKDTQQEAEVYAD--------------GSTLETDTSADENLTLVFSDRGRGQ
VL2_HPV41 PSIEQDIGLTALGDNIENELQEIDLLTADGEEDQEGRDLQLVFSTGNDEVVDIMTIPIRA
VL2_BPV3 RTSIVTVQEGIPPGSVKLFINDAETIVTPHGPESNDTDRYQPFIPVTPAATPDIIITFEE
VL2_BPV4 ------------------------------------------------------------
VL2_HPV05 TNSYTVPRFETTRNGSYYTQDTKGYYVAYPESR------NNAEIIYPTPDIPVVIIHPHD
VL2_HPV5B TNSYTVPRFETTRNGSYYTQDTKGYYVAYPESR------NNAEIIYPTPDIPVVIIHTHD
VL2_HPV36 TTSYTVPRFETTRSGSYYVQDSKGYYVAYPESR------NNAEIIYPTPDIPVVVIHTHD
VL2_HPV47 TTSYTVPRFETTRSSSYYVQDTDGYYVAYPESR------DTIDIIYPTPELPVVVIHTHD
VL2_HPV12 TTSYTVPRFETTRSSSYYVQDTQGYYVAYPEHR------NTAEIIYPTPDIPVVVIHTHD
VL2_HPV08 TTSYTVPRFETTRSGSYYVQDTKGYYVAYPESR------NNEEIIYPTPDLPVVIIHTHD
VL2_HPV14 TSSYTVPRFETTRSGSYYAQDTKGYYVAYPEDRD-----ISMDIIYPTPELPVVIIHTYD
VL2_HPV21 TSSYTVPRFETTRSGSYYVQDTKGYYVAYPEDRD-----TSTDIIYPTPDLPVVIIHTFD
VL2_HPV20 TSTYTVPHFETTRSSSYYVQDTKGYYVAYPEDRD-----VSKDIIYPNPDLPVVIIHTYD
VL2_HPV19 TSTYTVPQFETTRSGSYYTQDTKGYYVAYPEDRS-----TSKDIIYPMPDLPVVIIHTYD
VL2_HPV25 TSTYTVPRVETTRSASYYTQDIQGYYVSYPEDRD-----TSKDIIYPMPDLPVVIIHTYD
VL2_HPV24 TTSYTVPRFESPRNSSYYVQDLQGYYVAYPESR------DKIELIYPSPTLPAVVIHTED
VL2_HPV49 STTFTVPRFSTPRSDTFYVQDLEGYAVSYPERR------NYPEIIYPQPDLPTVIIHTAD
VL2_HPV17 TTSVTVPRFETPRDTGFYIHDTQGYTVAYPESR------DTTEIILPHPDTPTVVIKFAE
VL2_HPV37 TNSITIPRFETPRDTGFYIQDIQGYNVAYPESR------DTTQVILPQPETPTVVIRFGE
VL2_HPV15 TTTYTVPRFESPRNTGFYIQDVHGYNVAYPESR------DTTEIILPQSDTPTVVINFEE
VL2_HPV09 TNTLTVPRFETPRDTSFYIQDIQGYTVSYPESR------QTTDIIFPHPDTPTVVIHIND
VL2_HPV38 TTSITVPRFQTPQNPTIYYQDIQGYHVSYPESR------ERPAIIYPTPDIPTVVIHVAD
VL2_HPV22 LPSITVPQFESPRETIVYIQDIEGNTVVYPKYE------ERPTIILPTPSGPAIIQSPTH
VL2_HPV23 SSAYSIPRFESPRETIVYVQDIEGNQVIYPGPT------ERPTIIFPLPSAPAVVIHTLD
VL2_HPV1 EGEVSILDLTQSRVRPPFGTEDTSLHVYYPNSSK-----GTPIINPEESFTPLVIIALNN
VL2_HPV63 RGRPTVIDIPFRPRRPPLGPINAGVDIYSPTASV-----GSPTINPTDLDIPLIIIHLDN
VL2_COPV6 RQQ----PIQVQRYIKPFSFVNEGVHIIHPGSES-----DFWLPPVTPDSTPAIVIDILD
VL2_HPV04 TSFTIPTIPPGLGLRIYVDDVGSDLFVSYPESR-----VIPAGGLPTEPFVPLEPALLSD
VL2_HPV65 SSFSIPTIPPGLGLRIYVDDVGSDLFVSYPETR-----VIPAGGLPTEPFTPLEPPFFSE
VL2_HPV60 ESMIMPTIPPGVALKLFIPEIAASVLNVVHPS------SEWTILIPNVPDEIIQPAMAVD
VL2_HPV48 GETVALPIPSITNSSKTFVTDIAENGLFANDTD-----SLLTPASTIVPAI--NWFPLFD
VL2_HPV50 -NDTAINIINLRNIPLTVGMNSGDISTTLSDYN-----ILDASLIVKSNVS--EQPLFVL
VL2_HPV16 GGAYNIPLVS------GPDIPINITDQAPSLI---------------PIVPGSPQYTIIA
VL2_HPV35 SSGYDIPITA------GPDIVFNSNTITNTVL---------------PVPTG-PIYSIIA
VL2_HPV31 STGFDIPIFS------GPDVPIEHAPTQVFPF---------------PLAPTTPQVSIFV
VL2_HPV33 NTGFDTPVMS------GPDIPSPLFPTSSPFV---------------PISPFFPFDTIVV
VL2_HPV58 NTGFDTPLVSL---EPGPDIASSVTSMSSPFI---------------PISPLTPFNTIIV
VL2_HPV67 SSGFDFPFSSTVPLQPGPDIVSPVAPTYTPFV---------------PVIPTSPFNNVLV
VL2_HPV52 NSGIDFVYQPTMSIESGPDIPLPSLPTHTPFV---------------PIAPTAPSTSIIV
VL2_HPV34 NAGLDT--HP------GPDIALPVPTAETIFT---------------PTVPVQPSGPIYI
VL2_RHPV1 SAGADVTLQS------GPDVSLDAPVAESPVH---------------PGVPLRPSAHIIL
VL2_HPV32 SLPTNIN--------VGPDLSPPE--SPPFIS---------------TRPVSPSFDSVMV
VL2_HPV42 SFPATVH--------VGPDLSVVD--HPWDST---------------PTSVMPQGNFVMV
VL2_HPV54 TASSPYT--------PIPTSFRPSSGHTPFVP---------------ARPIFPQ-TPIAV
VL2_HPV6A SIPNDLFLQS------GPDITFPTAPMGTPFS---------------PVTPALPTGPVFI
VL2_HPV6B SLPNDLFLQS------GPDITFPTAPMGTPFS---------------PVTPALPTGPVFI
VL2_HPV11 SIPSDWFVQS------GPDITFPTASMGTPFS---------------PVTPALPTGPVFI
VL2_HPV44 SLPADMFVQP------GPDIIFPTASTTTPYS---------------PVTPALPTGPVFI
VL2_HPV55 SLPGDMFVQP------GPDIIFPTASTTTPYS---------------PVTPALPTGPVFI
VL2_HPV13 SLPGDIFIQP------GPDITFPTAPTVTPYN---------------PVTPALPTGPVFI
VL2_PCPV1 SLPSNIFAQP------GPDIIFPAAPGVPPYN---------------PVIPSLPITPIFI
VL2_HPV40 ATVSDTLLTS------GPDIVFPSIPAGTPYL---------------PVSPSIPAISVLI
VL2_HPV07 ATIPDTFLTS------GPDIVFPSVPAGTPYL---------------PVSPSIPAISVLI
VL2_HPV43 ATVPDIYAQT------GPDISFPTIPIHIPYI---------------PVSPSISPQSVSI
VL2_HPV28 VSPVDVHLHP------GPDIITPA-STQWPFV---------------PLVPADTTHYVYI
VL2_HPV03 VSPVDVPLQP------GPDILLPA-SAQWPFV---------------PLSPVDTTHYVYI
VL2_HPV10 VSPVDVTLHT------GPDIVLPT-SAQWPYV---------------PLSPADTTHYVYI
VL2_HPV29 VSPVDVPLHT------GPDIILPS-SAQWPFV---------------PVAPADTTHYVYI
VL2_HPV18 TSSWDVPVYT------GPDITLPSTTSVWPIV---------------SPTAPASTQYIGI
VL2_HPV45 TSAWDVPIYT------GPDIILPSHTPMWPST---------------SPTNASTTTYIGI
VL2_HPV39 STSWNMPVNT------GPDIALPSTTPQLPLV---------------PSGPIDTTYAITI
VL2_HPVME GTAWNTPVNT------GPDVVLPATSPQLPLT---------------PSTPIDTTYAITI
VL2_HPV70 TTSWDIPVTT------GPDIVLPTASPNLPFV---------------PPTSIDTTVAIAI
VL2_HPV30 GKYWDVPIYS------GPDIVLPTGPTTWPYA---------------PQAPFDTTHDVVI
VL2_HPV53 GTSWDVPIYS------GPDVVLPTGPPTWPYA---------------PQSPFDTTHDVVI
VL2_HPV56 GNVWETPFYS------GPDIVLPTGPSTWPFV---------------PQSPYDVTHDVYI
VL2_HPV66 GNVWETPFYS------GPDIVLPTGPSTWPFV---------------PQSPSDVTHDVYI
VL2_HPV26 STSFELPVYS------GSDIYTPTSSPTWPSL---------------PPPPTTNLPAIVV
VL2_HPV69 STSFDIPIYN------GPDIYAPVPSSTWPYI---------------PPPPTTMSHSVVA
VL2_HPV51 STTYSVPIHT------GPDVVLPTSPTVWPYV---------------PHTSIDTKHSIVI
VL2_HPV82 STTYNVPIHT------GPDVVLPTSPTVWPFI---------------PHTSIDTQHAIVI
VL2_HPV27 SGGVDVPVYT------GPDIEPPVVPGLGPLI----------------PVAPSLPSSVYI
VL2_HPV2A SSGIDVPVYT------GPDIEPPNVPGMGPLI----------------PVAPSLPSSVYI
VL2_HPV57 SGGVDVPVYT------GPDIDPSVGPGMGPLV----------------PVIPAIPSSVYI
VL2_HPV61 ATGLDTPVTS------GPDVDFAHAPAPVPAV---------------PYVPATHPHSIYI
VL2_HPV62 STGLSVPAST------GPDVELPQFSVPVSVLT--------------PSFPATTPYSIYI
VL2_PAPVE R-QMAENSVYVSDNGGQESQQTPTVVINGNIN---------------VSME---------
VL2_PAPVD EGQSRDDGEYVIDNGGQ-SNITPTVVIDGSIA---------------LSLE---------
VL2_BPV1 G----SPDTYSASPVTDPDSTSPSLVIDDTTT---------------TPIIIIDGHTVDL
VL2_BPV2 G----SPDMYPASPVG-PDSTSPSLVIDDNTT---------------TPIIIIDGHTVDL
VL2_BPV5 KPLSTIPGSDLWPTNINIQNGPVDVDLQDSIL---------------PGIIITDSGVDGT
VL2_CRPVK GSHVPIPGKSTIGGPVNIGDSKYYTLNPGETTSF------------EADVISPVFIFEGN
VL2_HPV41 GGDDRPSVFIFSDDGTHIVYPTSTTATTPLVPAQ-------------PSDVPYIVVDLYS
VL2_BPV3 GTATFFLHPSLLKRHKHKHWFF-------------
VL2_BPV4 -----------------------------------
VL2_HPV05 STGDFYLHPSLHRR-KRKRKYL-------------
VL2_HPV5B NTGDFYLHPSLRRR-KRKRKYL-------------
VL2_HPV36 NTGDFYLHPSLRWR-KRKRKYL-------------
VL2_HPV47 NSGDFYLHPSLRRR-KRKRKYL-------------
VL2_HPV12 NSGDFYLHPSLRRR-KRKRKYL-------------
VL2_HPV08 NSGDFFLHPSLRRR-KRKRKYL-------------
VL2_HPV14 TSGDFYLHPSLHKRLKRKRKYL-------------
VL2_HPV21 TSGDFYLHPSLSRKFKRRRKYL-------------
VL2_HPV20 TSGDFYLHPSLTKRLKRKRKYL-------------
VL2_HPV19 TSGDFYLHPSLRKRFKRKRKYL-------------
VL2_HPV25 TSGDFYLHPSLTTRRRRKRKYL-------------
VL2_HPV24 SSGDFYLHPSLLQRRRRKRKYL-------------
VL2_HPV49 TSGDFYLHPSLRRR-KRKRTYL-------------
VL2_HPV17 AGGRFLFTP--------------------------
VL2_HPV37 AGTDYYLHPSLKKK-KRKRKYL-------------
VL2_HPV15 AGGDYYLHPSLKTR-KRKRKYL-------------
VL2_HPV09 TSGDYYLHPSLQRK-KRKRKYL-------------
VL2_HPV38 SSGDFYLHPSLRWR-RRKRKYL-------------
VL2_HPV22 SSFDYYLHPSLRRK-KRKRKYL-------------
VL2_HPV23 KSFDYYLHPSLRKK-RRKRKYL-------------
VL2_HPV1 STGDFELHPSLRKRRKRAYV---------------
VL2_HPV63 STGDYDLHPSLRKRRKLVHI---------------
VL2_COPV6 SSADYYLHPSLIKKRKRKHFFF-------------
VL2_HPV04 IFSTDFVYRPSLYRKKRKRLEMF------------
VL2_HPV65 FYSSDFVYRPSLYRKKRKRSDIF------------
VL2_HPV60 VYDDFYLHPHLLRRRKRKRLDFF------------
VL2_HPV48 SYSDFALDPFFIPR-KKRRLDIL------------
VL2_HPV50 DYSDYDLHPGLLP--KRRRIDYF------------
VL2_HPV16 DAGDFYLHPSYYMLRKRR--KRLPYFFSDVSLAA-
VL2_HPV35 DGGDFYLHPSYYLLKRRR--KRIPYFFADVSVAV-
VL2_HPV31 DGGDFYLHPSYYMLKRRR--KRVSYFFTDVSVAA-
VL2_HPV33 DGADFVLHPSYFILRRRR--KRFPYFFTDVRVAA-
VL2_HPV58 DGADFMLHPSYFILRRRR--KRFPYFFADVRVAA-
VL2_HPV67 YGSDFILHPSYF-LRRRR--KRFPYFFADVRVAA-
VL2_HPV52 DGTDFILHPSYFLLRRRR--KRFPYFFTDVRVAA-
VL2_HPV34 YGSDFILHPSLYVIPRKR--KRLSYFFADVATY--
VL2_RHPV1 YGGDFYLHPSYLGIRRKR--KRMHNFFSDVYVAA-
VL2_HPV32 LGWDFILHPSYMWRK-RR--KPVPYFFADVRVAA-
VL2_HPV42 SGWDFILHPSYFWRR-RR--KPVPYFFADVRVAA-
VL2_HPV54 NGGDFYLHPSYTYVRKRR--KRFPYFLADGYVAA-
VL2_HPV6A TGSGFYLHPAWYFARKRR--KRIPLFFSDVAA---
VL2_HPV6B TGSGFYLHPAWYFARKRR--KRIPLFFSDVAA---
VL2_HPV11 TGSDFYLHPTWYFARRRR--KRIPLFFTDVAA---
VL2_HPV44 SGAAFYLYPTWYFARKRR--KRVSLFFADVAA---
VL2_HPV55 SGATFYLYPAWYFARKRR--KRVSLFFADVAA---
VL2_HPV13 TASGFYLYPTWYFTRKRR--KRVSLFFTDVAA---
VL2_PCPV1 SGSQFYLHPSLYLARKRR--KRVSLFFADVAA---
VL2_HPV40 HGTDYYLHPAYYLRKRRK--RILAHQYVAT-----
VL2_HPV07 RGTDYYLNPAYYFRKRRK--RILAY----------
VL2_HPV43 HGTDFYLHPSLWHLGKRR--KRFSYFFTDNYVAA-
VL2_HPV28 DGGDFYLWPVTLFVPRRRRRKRLSYFLADGTVAL-
VL2_HPV03 DGGDFYLWPVTFFLPRRRRRKRVSYFLADGTVAL-
VL2_HPV10 DGGDFYLWPVTFHFSRHRRRKRVSYFFADGTLAL-
VL2_HPV29 DGGDYFLWPVTFPVSRKRRRKRLSYFLADGFVAL-
VL2_HPV18 HGTHYYLWPLYYFIPKKR--KRVPYFFADGFVAA-
VL2_HPV45 HGTQYYLWPWYYYFPKKR--KRIPYFFADGFVAA-
VL2_HPV39 QGSNYYLLPLLYFFLKKR--KRIPYFFSDGYVAV-
VL2_HPVME YGTNYYLLPLLFFLLKKR--KRLPYFFADGIVAL-
VL2_HPV70 QGSNYYLLPLLYYFLKKR--KRIPYFFTDGFVAV-
VL2_HPV30 HGSTFALWPVYFLRRRRR--KHVPYFLADGGVAA-
VL2_HPV53 QGSTFALWPVYFLKRRRR--KRIPYFLADGGVAA-
VL2_HPV56 QGSSFALWPVYFFRRRRR--KRIPYFFADGDVAA-
VL2_HPV66 QGATFALWPVYFFKRRRR--KRIPYFFADGDVAA-
VL2_HPV26 HGDNYYLWPYIYLIHKRR--KRMPYFFSDGFVAY-
VL2_HPV69 QGGNYYLWPYIYLIHKRRR-KRVPCFFSDGLAAY-
VL2_HPV51 LGGDYYLWPYTHLLRKRR--KRIPYFFTDGIVAH-
VL2_HPV82 QGGDYYFVAVYIFVTQTP-----------------
VL2_HPV27 FGGDYYLLPSYILWPKRR--KRVNYFFADGFVAA-
VL2_HPV2A FGGDYYLMPSYVLWPKRR--KRVHYFFADGFVAA-
VL2_HPV57 VGGDYYLLPSYVLWPKRR--KRVHYFFADGYVAA-
VL2_HPV61 QGSDFYLLPAYVFFPKRR--KRVPYSFSDGFVAAW
VL2_HPV62 VGSDYYLFPSYIFFPKKH--KRLHYFFTDGYVAAW
VL2_PAPVE YFRHYYLHPSLLGRKRKR--LFG------------
VL2_PAPVD YFRHYYLHPSLLRRKRKRNPIFI------------
VL2_BPV1 YSSNYTLHPSLLRKRKKRKHA--------------
VL2_BPV2 YSNNYSLHPSLLRKRKKRKHA--------------
VL2_BPV5 YFLNTYLHPSLHKRKKRRFS---------------
VL2_CRPVK ADGTYYLEEPLRKKRRKSIFLLADGSVAVYAE---
VL2_HPV41 GSMDYDIHPSLLRRKRKKRKRVYFSDGRVASRPK-