CONSTRUCT { _:4315 up:source unirule:MF_00011 . _:4316 up:source unirule:MF_00011 . _:4317 up:source unirule:MF_00011 . _:4318 up:source unirule:MF_00011 . _:4319 up:source unirule:MF_00011 . _:4320 up:source unirule:MF_00011 . _:4321 up:source unirule:MF_00011 . _:4322 up:source unirule:MF_00011 . _:4323 up:source unirule:MF_00011 . _:4324 up:source unirule:MF_00011 . _:4325 up:source unirule:MF_00011 . _:4326 up:source unirule:MF_00011 . _:4327 up:source unirule:MF_00011 . _:4328 up:source unirule:MF_00011 . _:4329 up:source unirule:MF_00011 . _:4330 up:source unirule:MF_00011 . _:4331 up:source unirule:MF_00011 . _:4332 up:source unirule:MF_00011 . _:4333 up:source unirule:MF_00011 . _:4334 up:source unirule:MF_00011 . _:4335 up:source unirule:MF_00011 . _:4336 up:source unirule:MF_00011 . _:4337 up:source unirule:MF_00011 . _:4338 up:source unirule:MF_00011 . _:4339 up:source unirule:MF_00011 . _:4340 up:source unirule:MF_00011 . _:4341 up:source unirule:MF_00011 . _:4342 up:source unirule:MF_00011 . _:4343 up:source unirule:MF_00011 . _:4344 up:source unirule:MF_00011 . _:4345 up:source unirule:MF_00011 . _:4346 up:source unirule:MF_00011 . _:4347 up:source unirule:MF_00011 . _:4348 up:source unirule:MF_00011 . _:4349 up:source unirule:MF_00011 . _:4350 up:source unirule:MF_00011 . _:4351 up:source unirule:MF_00011 . _:4352 up:source unirule:MF_00011 . _:4353 up:source unirule:MF_00011 . ?this up:alternativeName ?name1 ; up:annotation ?annotation3 , ?annotation4 , ?annotation6 , ?annotation7 , ?annotation8 , ?annotation9 , ?annotation11 ; up:classifiedWith GO:0000287 , GO:0004019 , GO:0005525 , GO:0005737 , GO:0006164 , keyword:342 , keyword:436 , keyword:460 , keyword:479 , keyword:547 , keyword:658 , keyword:963 ; up:recommendedName ?name0 . ?name0 up:ecName '6.3.4.4' ; up:fullName 'Adenylosuccinate synthetase' ; up:shortName 'AMPSase' , 'AdSS' ; rdf:type up:Structured_Name . ?name1 up:fullName 'IMP--aspartate ligase' ; rdf:type up:Structured_Name . ?gene2 skos:prefLabel 'purA' . ?annotation3 a up:Function_Annotation ; rdfs:comment 'Plays an important role in the de novo pathway of purine nucleotide biosynthesis. Catalyzes the first committed step in the biosynthesis of AMP from IMP.' . ?annotation4 up:activity ?activity5 ; rdf:type up:Catalytic_Activity_Annotation . ?activity5 up:catalyticActivity <http://rdf.rhea-db.org/15753>; up:enzymeClass <http://purl.uniprot.org/enzyme/6.3.4.4>. ?annotation6 up:cofactor chebi:18420 ; rdf:type up:Cofactor_Annotation ; rdfs:comment 'Binds 1 Mg(2+) ion per subunit.' . ?annotation7 a up:Pathway_Annotation ; rdfs:comment 'Purine metabolism; AMP biosynthesis via de novo pathway; AMP from IMP: step 1/2.' . ?annotation8 a up:Subunit_Annotation ; rdfs:comment 'Homodimer.' . ?annotation9 a up:Subcellular_Location_Annotation . ?annotation9li10 up:cellularComponent <http://purl.uniprot.org/locations/null>. ?annotation11 a up:Similarity_Annotation ; rdfs:comment 'Belongs to the adenylosuccinate synthetase family.' . ?pfs12 up:annotation ?annotation13 . ?annotation13 faldo:begin ?pfsb14 ; faldo:end ?pfse15 ; up:ligand ?ligand16 ; rdf:type up:Binding_Site_Annotation . ?pfsb14 faldo:position ?thisPositionOn17 ; rdf:type faldo:ExactPosition . ?pfse15 faldo:position ?thisPositionOn18 ; rdf:type faldo:ExactPosition . ?ligand16 rdfs:subClassOf chebi:37565 . ?pfs19 up:annotation ?annotation20 . ?annotation20 faldo:begin ?pfsb21 ; faldo:end ?pfse22 ; up:ligand ?ligand23 ; rdf:type up:Binding_Site_Annotation . ?pfsb21 faldo:position ?thisPositionOn24 ; rdf:type faldo:ExactPosition . ?pfse22 faldo:position ?thisPositionOn25 ; rdf:type faldo:ExactPosition . ?ligand23 rdfs:subClassOf chebi:37565 . ?pfs26 up:annotation ?annotation27 . ?annotation27 faldo:begin ?pfsb28 ; faldo:end ?pfse29 ; up:ligand ?ligand30 ; rdf:type up:Binding_Site_Annotation . ?pfsb28 faldo:position ?thisPositionOn31 ; rdf:type faldo:ExactPosition . ?pfse29 faldo:position ?thisPositionOn32 ; rdf:type faldo:ExactPosition . ?ligand30 rdfs:subClassOf chebi:37565 . ?pfs33 up:annotation ?annotation34 . ?annotation34 faldo:begin ?pfsb35 ; faldo:end ?pfse36 ; up:ligand ?ligand37 ; rdf:type up:Binding_Site_Annotation . ?pfsb35 faldo:position ?thisPositionOn38 ; rdf:type faldo:ExactPosition . ?pfse36 faldo:position ?thisPositionOn39 ; rdf:type faldo:ExactPosition . ?ligand37 rdfs:subClassOf chebi:37565 . ?pfs40 up:annotation ?annotation41 . ?annotation41 faldo:begin ?pfsb42 ; faldo:end ?pfse43 ; up:ligand ?ligand44 ; rdf:type up:Binding_Site_Annotation ; rdfs:comment 'in other chain' . ?pfsb42 faldo:position ?thisPositionOn45 ; rdf:type faldo:ExactPosition . ?pfse43 faldo:position ?thisPositionOn46 ; rdf:type faldo:ExactPosition . ?ligand44 rdfs:subClassOf chebi:58053 . ?pfs47 up:annotation ?annotation48 . ?annotation48 faldo:begin ?pfsb49 ; faldo:end ?pfse50 ; up:ligand ?ligand51 ; rdf:type up:Binding_Site_Annotation ; rdfs:comment 'in other chain' . ?pfsb49 faldo:position ?thisPositionOn52 ; rdf:type faldo:ExactPosition . ?pfse50 faldo:position ?thisPositionOn53 ; rdf:type faldo:ExactPosition . ?ligand51 rdfs:subClassOf chebi:58053 . ?pfs54 up:annotation ?annotation55 . ?annotation55 faldo:begin ?pfsb56 ; faldo:end ?pfse57 ; up:ligand ?ligand58 ; rdf:type up:Binding_Site_Annotation . ?pfsb56 faldo:position ?thisPositionOn60 ; rdf:type faldo:ExactPosition . ?pfse57 faldo:position ?thisPositionOn61 ; rdf:type faldo:ExactPosition . ?ligand58 rdfs:subClassOf ?molecule59 . ?molecule59 rdfs:label 'substrate' . ?pfs62 up:annotation ?annotation63 . ?annotation63 faldo:begin ?pfsb64 ; faldo:end ?pfse65 ; rdf:type up:Active_Site_Annotation ; rdfs:comment 'Proton acceptor' . ?pfsb64 faldo:position ?thisPositionOn66 ; rdf:type faldo:ExactPosition . ?pfse65 faldo:position ?thisPositionOn67 ; rdf:type faldo:ExactPosition . ?pfs68 up:annotation ?annotation69 . ?annotation69 faldo:begin ?pfsb70 ; faldo:end ?pfse71 ; rdf:type up:Active_Site_Annotation ; rdfs:comment 'Proton donor' . ?pfsb70 faldo:position ?thisPositionOn72 ; rdf:type faldo:ExactPosition . ?pfse71 faldo:position ?thisPositionOn73 ; rdf:type faldo:ExactPosition . ?pfs74 up:annotation ?annotation75 . ?annotation75 faldo:begin ?pfsb76 ; faldo:end ?pfse77 ; up:ligand ?ligand78 ; rdf:type up:Binding_Site_Annotation . ?pfsb76 faldo:position ?thisPositionOn79 ; rdf:type faldo:ExactPosition . ?pfse77 faldo:position ?thisPositionOn80 ; rdf:type faldo:ExactPosition . ?ligand78 rdfs:subClassOf chebi:18420 . ?pfs81 up:annotation ?annotation82 . ?annotation82 faldo:begin ?pfsb83 ; faldo:end ?pfse84 ; up:ligand ?ligand85 ; rdf:type up:Binding_Site_Annotation . ?pfsb83 faldo:position ?thisPositionOn86 ; rdf:type faldo:ExactPosition . ?pfse84 faldo:position ?thisPositionOn87 ; rdf:type faldo:ExactPosition . ?ligand85 rdfs:subClassOf chebi:18420 . ?pfs88 up:annotation ?annotation89 . ?annotation89 faldo:begin ?pfsb90 ; faldo:end ?pfse91 ; up:ligand ?ligand92 ; rdf:type up:Binding_Site_Annotation ; rdfs:comment 'in other chain' . ?pfsb90 faldo:position ?thisPositionOn93 ; rdf:type faldo:ExactPosition . ?pfse91 faldo:position ?thisPositionOn94 ; rdf:type faldo:ExactPosition . ?ligand92 rdfs:subClassOf chebi:58053 . ?pfs95 up:annotation ?annotation96 . ?annotation96 faldo:begin ?pfsb97 ; faldo:end ?pfse98 ; up:ligand ?ligand99 ; rdf:type up:Binding_Site_Annotation . ?pfsb97 faldo:position ?thisPositionOn100 ; rdf:type faldo:ExactPosition . ?pfse98 faldo:position ?thisPositionOn101 ; rdf:type faldo:ExactPosition . ?ligand99 rdfs:subClassOf chebi:58053 . ?pfs102 up:annotation ?annotation103 . ?annotation103 faldo:begin ?pfsb104 ; faldo:end ?pfse105 ; up:ligand ?ligand106 ; rdf:type up:Binding_Site_Annotation ; rdfs:comment 'in other chain' . ?pfsb104 faldo:position ?thisPositionOn107 ; rdf:type faldo:ExactPosition . ?pfse105 faldo:position ?thisPositionOn108 ; rdf:type faldo:ExactPosition . ?ligand106 rdfs:subClassOf chebi:58053 . ?pfs109 up:annotation ?annotation110 . ?annotation110 faldo:begin ?pfsb111 ; faldo:end ?pfse112 ; up:ligand ?ligand113 ; rdf:type up:Binding_Site_Annotation ; rdfs:comment 'in other chain' . ?pfsb111 faldo:position ?thisPositionOn114 ; rdf:type faldo:ExactPosition . ?pfse112 faldo:position ?thisPositionOn115 ; rdf:type faldo:ExactPosition . ?ligand113 rdfs:subClassOf chebi:58053 . ?pfs116 up:annotation ?annotation117 . ?annotation117 faldo:begin ?pfsb118 ; faldo:end ?pfse119 ; up:ligand ?ligand120 ; rdf:type up:Binding_Site_Annotation ; rdfs:comment 'in other chain' . ?pfsb118 faldo:position ?thisPositionOn121 ; rdf:type faldo:ExactPosition . ?pfse119 faldo:position ?thisPositionOn122 ; rdf:type faldo:ExactPosition . ?ligand120 rdfs:subClassOf chebi:58053 . ?pfs123 up:annotation ?annotation124 . ?annotation124 faldo:begin ?pfsb125 ; faldo:end ?pfse126 ; up:ligand ?ligand127 ; rdf:type up:Binding_Site_Annotation . ?pfsb125 faldo:position ?thisPositionOn128 ; rdf:type faldo:ExactPosition . ?pfse126 faldo:position ?thisPositionOn129 ; rdf:type faldo:ExactPosition . ?ligand127 rdfs:subClassOf chebi:37565 . _:4354 a rdf:Statement ; up:attribution _:4315 ; rdf:subject ?this ; rdf:predicate up:recommendedName ; rdf:object ?name0 . _:4355 a rdf:Statement ; up:attribution _:4316 ; rdf:subject ?this ; rdf:predicate up:alternativeName ; rdf:object ?name1 . _:4356 a rdf:Statement ; up:attribution _:4317 ; rdf:subject ?gene2 ; rdf:predicate up:encodedBy ; rdf:object ?gene2 . _:4357 a rdf:Statement ; up:attribution _:4318 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation3 . _:4358 a rdf:Statement ; up:attribution _:4319 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation4 . _:4359 a rdf:Statement ; up:attribution _:4320 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation6 . _:4360 a rdf:Statement ; up:attribution _:4321 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation7 . _:4361 a rdf:Statement ; up:attribution _:4322 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation8 . _:4362 a rdf:Statement ; up:attribution _:4323 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation9 . _:4363 a rdf:Statement ; up:attribution _:4324 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation11 . _:4364 a rdf:Statement ; up:attribution _:4325 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:963 . _:4365 a rdf:Statement ; up:attribution _:4326 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:658 . _:4366 a rdf:Statement ; up:attribution _:4327 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:436 . _:4367 a rdf:Statement ; up:attribution _:4328 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:342 . _:4368 a rdf:Statement ; up:attribution _:4329 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:547 . _:4369 a rdf:Statement ; up:attribution _:4330 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:460 . _:4370 a rdf:Statement ; up:attribution _:4331 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:479 . _:4371 a rdf:Statement ; up:attribution _:4332 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object GO:0004019 . _:4372 a rdf:Statement ; up:attribution _:4333 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object GO:0005525 . _:4373 a rdf:Statement ; up:attribution _:4334 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object GO:0000287 . _:4374 a rdf:Statement ; up:attribution _:4335 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object GO:0006164 . _:4375 a rdf:Statement ; up:attribution _:4336 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object GO:0005737 . _:4376 a rdf:Statement ; up:source unirule:MF_00011 ; rdf:subject ?pfs12 ; rdf:predicate up:annotation ; rdf:object ?annotation13 . _:4377 a rdf:Statement ; up:attribution _:4337 ; rdf:subject ?pfs12 ; rdf:predicate up:annotation ; rdf:object ?annotation13 . _:4378 a rdf:Statement ; up:source unirule:MF_00011 ; rdf:subject ?pfs19 ; rdf:predicate up:annotation ; rdf:object ?annotation20 . _:4379 a rdf:Statement ; up:attribution _:4338 ; rdf:subject ?pfs19 ; rdf:predicate up:annotation ; rdf:object ?annotation20 . _:4380 a rdf:Statement ; up:source unirule:MF_00011 ; rdf:subject ?pfs26 ; rdf:predicate up:annotation ; rdf:object ?annotation27 . _:4381 a rdf:Statement ; up:attribution _:4339 ; rdf:subject ?pfs26 ; rdf:predicate up:annotation ; rdf:object ?annotation27 . _:4382 a rdf:Statement ; up:source unirule:MF_00011 ; rdf:subject ?pfs33 ; rdf:predicate up:annotation ; rdf:object ?annotation34 . _:4383 a rdf:Statement ; up:attribution _:4340 ; rdf:subject ?pfs33 ; rdf:predicate up:annotation ; rdf:object ?annotation34 . _:4384 a rdf:Statement ; up:source unirule:MF_00011 ; rdf:subject ?pfs40 ; rdf:predicate up:annotation ; rdf:object ?annotation41 . _:4385 a rdf:Statement ; up:attribution _:4341 ; rdf:subject ?pfs40 ; rdf:predicate up:annotation ; rdf:object ?annotation41 . _:4386 a rdf:Statement ; up:source unirule:MF_00011 ; rdf:subject ?pfs47 ; rdf:predicate up:annotation ; rdf:object ?annotation48 . _:4387 a rdf:Statement ; up:attribution _:4342 ; rdf:subject ?pfs47 ; rdf:predicate up:annotation ; rdf:object ?annotation48 . _:4388 a rdf:Statement ; up:source unirule:MF_00011 ; rdf:subject ?pfs54 ; rdf:predicate up:annotation ; rdf:object ?annotation55 . _:4389 a rdf:Statement ; up:attribution _:4343 ; rdf:subject ?pfs54 ; rdf:predicate up:annotation ; rdf:object ?annotation55 . _:4390 a rdf:Statement ; up:source unirule:MF_00011 ; rdf:subject ?pfs62 ; rdf:predicate up:annotation ; rdf:object ?annotation63 . _:4391 a rdf:Statement ; up:attribution _:4344 ; rdf:subject ?pfs62 ; rdf:predicate up:annotation ; rdf:object ?annotation63 . _:4392 a rdf:Statement ; up:source unirule:MF_00011 ; rdf:subject ?pfs68 ; rdf:predicate up:annotation ; rdf:object ?annotation69 . _:4393 a rdf:Statement ; up:attribution _:4345 ; rdf:subject ?pfs68 ; rdf:predicate up:annotation ; rdf:object ?annotation69 . _:4394 a rdf:Statement ; up:source unirule:MF_00011 ; rdf:subject ?pfs74 ; rdf:predicate up:annotation ; rdf:object ?annotation75 . _:4395 a rdf:Statement ; up:attribution _:4346 ; rdf:subject ?pfs74 ; rdf:predicate up:annotation ; rdf:object ?annotation75 . _:4396 a rdf:Statement ; up:source unirule:MF_00011 ; rdf:subject ?pfs81 ; rdf:predicate up:annotation ; rdf:object ?annotation82 . _:4397 a rdf:Statement ; up:attribution _:4347 ; rdf:subject ?pfs81 ; rdf:predicate up:annotation ; rdf:object ?annotation82 . _:4398 a rdf:Statement ; up:source unirule:MF_00011 ; rdf:subject ?pfs88 ; rdf:predicate up:annotation ; rdf:object ?annotation89 . _:4399 a rdf:Statement ; up:attribution _:4348 ; rdf:subject ?pfs88 ; rdf:predicate up:annotation ; rdf:object ?annotation89 . _:4400 a rdf:Statement ; up:source unirule:MF_00011 ; rdf:subject ?pfs95 ; rdf:predicate up:annotation ; rdf:object ?annotation96 . _:4401 a rdf:Statement ; up:attribution _:4349 ; rdf:subject ?pfs95 ; rdf:predicate up:annotation ; rdf:object ?annotation96 . _:4402 a rdf:Statement ; up:source unirule:MF_00011 ; rdf:subject ?pfs102 ; rdf:predicate up:annotation ; rdf:object ?annotation103 . _:4403 a rdf:Statement ; up:attribution _:4350 ; rdf:subject ?pfs102 ; rdf:predicate up:annotation ; rdf:object ?annotation103 . _:4404 a rdf:Statement ; up:source unirule:MF_00011 ; rdf:subject ?pfs109 ; rdf:predicate up:annotation ; rdf:object ?annotation110 . _:4405 a rdf:Statement ; up:attribution _:4351 ; rdf:subject ?pfs109 ; rdf:predicate up:annotation ; rdf:object ?annotation110 . _:4406 a rdf:Statement ; up:source unirule:MF_00011 ; rdf:subject ?pfs116 ; rdf:predicate up:annotation ; rdf:object ?annotation117 . _:4407 a rdf:Statement ; up:attribution _:4352 ; rdf:subject ?pfs116 ; rdf:predicate up:annotation ; rdf:object ?annotation117 . _:4408 a rdf:Statement ; up:source unirule:MF_00011 ; rdf:subject ?pfs123 ; rdf:predicate up:annotation ; rdf:object ?annotation124 . _:4409 a rdf:Statement ; up:attribution _:4353 ; rdf:subject ?pfs123 ; rdf:predicate up:annotation ; rdf:object ?annotation124 . } WHERE { #baseURI: http://purl.uniprot.org/unirule/MF_00011 #Rule MF_00011 Created by:hamap on:2001-06-01 Modified by:ecastro on:2023-06-01 { ?this up:organism ?thisOrganism ; rdfs:seeAlso signature:MF_00011 . ?thisOrganism rdfs:subClassOf+ taxon:2 . FILTER (! (EXISTS { ?this rdfs:seeAlso signature:MF_04166 . })) . } UNION { ?this up:organism ?thisOrganism ; rdfs:seeAlso signature:MF_00011 . ?thisOrganism rdfs:subClassOf+ taxon:2 . FILTER (! (EXISTS { ?this rdfs:seeAlso signature:MF_04166 . })) . FILTER (! (EXISTS { ?thisOrganism rdfs:subClassOf+ taxon:2759 . })) . } UNION { ?this up:organism ?thisOrganism ; rdfs:seeAlso signature:MF_00011 . ?thisOrganism rdfs:subClassOf+ taxon:2157 . FILTER (! (EXISTS { ?this rdfs:seeAlso signature:MF_04166 . })) . } UNION { ?this up:organism ?thisOrganism ; rdfs:seeAlso signature:MF_00011 . ?thisOrganism rdfs:subClassOf+ taxon:2157 . FILTER (! (EXISTS { ?this rdfs:seeAlso signature:MF_04166 . })) . FILTER (! (EXISTS { ?thisOrganism rdfs:subClassOf+ taxon:2759 . })) . } BIND(URI(CONCAT(STR(?this), '#MF_00011a0')) AS ?name0) . BIND(URI(CONCAT(STR(?this), '#MF_00011a1')) AS ?name1) . BIND(URI(CONCAT(STR(?this), '#MF_00011a3')) AS ?annotation3) . BIND(URI(CONCAT(STR(?this), '#MF_00011a4')) AS ?annotation4) . BIND(URI(CONCAT(STR(?this), '#MF_00011a6')) AS ?annotation6) . BIND(URI(CONCAT(STR(?this), '#MF_00011a7')) AS ?annotation7) . BIND(URI(CONCAT(STR(?this), '#MF_00011a8')) AS ?annotation8) . BIND(URI(CONCAT(STR(?this), '#MF_00011a9')) AS ?annotation9) . BIND(URI(CONCAT(STR(?this), '#MF_00011a11')) AS ?annotation11) . OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch134 faldo:location ?templateMotifSequenceMatchRegionP0A7D4135 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0A7D4137 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP0A7D4MF_00011130 . ?templateMotifSequenceMatchRegionP0A7D4135 faldo:begin ?templateMotifSequenceMatchBeginP0A7D4136 . ?templateMotifSequenceMatchBeginP0A7D4136 faldo:position ?templateMotifSequenceMatchBeginPositionP0A7D4131 ; faldo:reference isoform:P0A7D4-1 . ?templateMotifSequenceProfileAlignmentOperationP0A7D4137 edam:has_input signature:MF_00011 ; rdf:type edam:operation_0300 . ?targetMotifMatch138 faldo:location ?targetMotifMatchRegionMatch139 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00011141 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP0A7D4MF_00011132 . ?targetMotifMatchRegionMatch139 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00011140 . ?targetMotifMatchRegionMatchBeginMF_00011140 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00011133 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_00011141 edam:has_input signature:MF_00011 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0A7D4MF_00011130, 1, (STRLEN(?templateMotifCigarP0A7D4MF_00011130) - STRLEN(REPLACE(?templateMotifCigarP0A7D4MF_00011130, CONCAT('^(?:-*[^-]){', STR(((13 - ?templateMotifSequenceMatchBeginPositionP0A7D4131) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1142) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0A7D4MF_00011132, 1, (STRLEN(?targetMotifMatchCigarP0A7D4MF_00011132) - STRLEN(REPLACE(?targetMotifMatchCigarP0A7D4MF_00011132, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1142), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0A7D4MF_00011132, 1, (STRLEN(?targetMotifMatchCigarP0A7D4MF_00011132) - STRLEN(REPLACE(?targetMotifMatchCigarP0A7D4MF_00011132, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1142), '}'), '')))), '[^-]', ''))) AS ?step2143) . BIND(((?step2143 + ?targetMotifMatchRegionMatchBeginPositionMF_00011133) - 1) AS ?thisPositionOn17) . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0A7D4MF_00011130, 1, (STRLEN(?templateMotifCigarP0A7D4MF_00011130) - STRLEN(REPLACE(?templateMotifCigarP0A7D4MF_00011130, CONCAT('^(?:-*[^-]){', STR(((19 - ?templateMotifSequenceMatchBeginPositionP0A7D4131) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1144) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0A7D4MF_00011132, 1, (STRLEN(?targetMotifMatchCigarP0A7D4MF_00011132) - STRLEN(REPLACE(?targetMotifMatchCigarP0A7D4MF_00011132, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1144), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0A7D4MF_00011132, 1, (STRLEN(?targetMotifMatchCigarP0A7D4MF_00011132) - STRLEN(REPLACE(?targetMotifMatchCigarP0A7D4MF_00011132, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1144), '}'), '')))), '[^-]', ''))) AS ?step2145) . BIND(((?step2145 + ?targetMotifMatchRegionMatchBeginPositionMF_00011133) - 1) AS ?thisPositionOn18) . BIND(?this AS ?pfs1t146) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn17))) AS ?pfsb14) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn18))) AS ?pfse15) . FILTER (REGEX('GDE[GA]K[GA][ARNDCQEGHILKMFPSTWYVBZJUOX]', SUBSTR(?thisSequenceValue, ?thisPositionOn17, (?thisPositionOn18 - ?thisPositionOn17)))) . BIND(URI(CONCAT(STR(?this), '#MF_00011a13')) AS ?annotation13) . BIND(?this AS ?pfs12) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch151 faldo:location ?templateMotifSequenceMatchRegionP0A7D4152 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0A7D4154 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP0A7D4MF_00011147 . ?templateMotifSequenceMatchRegionP0A7D4152 faldo:begin ?templateMotifSequenceMatchBeginP0A7D4153 . ?templateMotifSequenceMatchBeginP0A7D4153 faldo:position ?templateMotifSequenceMatchBeginPositionP0A7D4148 ; faldo:reference isoform:P0A7D4-1 . ?templateMotifSequenceProfileAlignmentOperationP0A7D4154 edam:has_input signature:MF_00011 ; rdf:type edam:operation_0300 . ?targetMotifMatch155 faldo:location ?targetMotifMatchRegionMatch156 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00011158 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP0A7D4MF_00011149 . ?targetMotifMatchRegionMatch156 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00011157 . ?targetMotifMatchRegionMatchBeginMF_00011157 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00011150 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_00011158 edam:has_input signature:MF_00011 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0A7D4MF_00011147, 1, (STRLEN(?templateMotifCigarP0A7D4MF_00011147) - STRLEN(REPLACE(?templateMotifCigarP0A7D4MF_00011147, CONCAT('^(?:-*[^-]){', STR(((41 - ?templateMotifSequenceMatchBeginPositionP0A7D4148) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1159) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0A7D4MF_00011149, 1, (STRLEN(?targetMotifMatchCigarP0A7D4MF_00011149) - STRLEN(REPLACE(?targetMotifMatchCigarP0A7D4MF_00011149, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1159), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0A7D4MF_00011149, 1, (STRLEN(?targetMotifMatchCigarP0A7D4MF_00011149) - STRLEN(REPLACE(?targetMotifMatchCigarP0A7D4MF_00011149, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1159), '}'), '')))), '[^-]', ''))) AS ?step2160) . BIND(((?step2160 + ?targetMotifMatchRegionMatchBeginPositionMF_00011150) - 1) AS ?thisPositionOn24) . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0A7D4MF_00011147, 1, (STRLEN(?templateMotifCigarP0A7D4MF_00011147) - STRLEN(REPLACE(?templateMotifCigarP0A7D4MF_00011147, CONCAT('^(?:-*[^-]){', STR(((43 - ?templateMotifSequenceMatchBeginPositionP0A7D4148) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1161) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0A7D4MF_00011149, 1, (STRLEN(?targetMotifMatchCigarP0A7D4MF_00011149) - STRLEN(REPLACE(?targetMotifMatchCigarP0A7D4MF_00011149, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1161), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0A7D4MF_00011149, 1, (STRLEN(?targetMotifMatchCigarP0A7D4MF_00011149) - STRLEN(REPLACE(?targetMotifMatchCigarP0A7D4MF_00011149, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1161), '}'), '')))), '[^-]', ''))) AS ?step2162) . BIND(((?step2162 + ?targetMotifMatchRegionMatchBeginPositionMF_00011150) - 1) AS ?thisPositionOn25) . BIND(?this AS ?pfs1t163) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn24))) AS ?pfsb21) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn25))) AS ?pfse22) . FILTER (REGEX('GH[ARNDCQEGHILKMFPSTWYVBZJUOX]', SUBSTR(?thisSequenceValue, ?thisPositionOn24, (?thisPositionOn25 - ?thisPositionOn24)))) . BIND(URI(CONCAT(STR(?this), '#MF_00011a20')) AS ?annotation20) . BIND(?this AS ?pfs19) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch168 faldo:location ?templateMotifSequenceMatchRegionP0A7D4169 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0A7D4171 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP0A7D4MF_00011164 . ?templateMotifSequenceMatchRegionP0A7D4169 faldo:begin ?templateMotifSequenceMatchBeginP0A7D4170 . ?templateMotifSequenceMatchBeginP0A7D4170 faldo:position ?templateMotifSequenceMatchBeginPositionP0A7D4165 ; faldo:reference isoform:P0A7D4-1 . ?templateMotifSequenceProfileAlignmentOperationP0A7D4171 edam:has_input signature:MF_00011 ; rdf:type edam:operation_0300 . ?targetMotifMatch172 faldo:location ?targetMotifMatchRegionMatch173 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00011175 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP0A7D4MF_00011166 . ?targetMotifMatchRegionMatch173 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00011174 . ?targetMotifMatchRegionMatchBeginMF_00011174 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00011167 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_00011175 edam:has_input signature:MF_00011 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0A7D4MF_00011164, 1, (STRLEN(?templateMotifCigarP0A7D4MF_00011164) - STRLEN(REPLACE(?templateMotifCigarP0A7D4MF_00011164, CONCAT('^(?:-*[^-]){', STR(((332 - ?templateMotifSequenceMatchBeginPositionP0A7D4165) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1176) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0A7D4MF_00011166, 1, (STRLEN(?targetMotifMatchCigarP0A7D4MF_00011166) - STRLEN(REPLACE(?targetMotifMatchCigarP0A7D4MF_00011166, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1176), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0A7D4MF_00011166, 1, (STRLEN(?targetMotifMatchCigarP0A7D4MF_00011166) - STRLEN(REPLACE(?targetMotifMatchCigarP0A7D4MF_00011166, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1176), '}'), '')))), '[^-]', ''))) AS ?step2177) . BIND(((?step2177 + ?targetMotifMatchRegionMatchBeginPositionMF_00011167) - 1) AS ?thisPositionOn31) . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0A7D4MF_00011164, 1, (STRLEN(?templateMotifCigarP0A7D4MF_00011164) - STRLEN(REPLACE(?templateMotifCigarP0A7D4MF_00011164, CONCAT('^(?:-*[^-]){', STR(((334 - ?templateMotifSequenceMatchBeginPositionP0A7D4165) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1178) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0A7D4MF_00011166, 1, (STRLEN(?targetMotifMatchCigarP0A7D4MF_00011166) - STRLEN(REPLACE(?targetMotifMatchCigarP0A7D4MF_00011166, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1178), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0A7D4MF_00011166, 1, (STRLEN(?targetMotifMatchCigarP0A7D4MF_00011166) - STRLEN(REPLACE(?targetMotifMatchCigarP0A7D4MF_00011166, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1178), '}'), '')))), '[^-]', ''))) AS ?step2179) . BIND(((?step2179 + ?targetMotifMatchRegionMatchBeginPositionMF_00011167) - 1) AS ?thisPositionOn32) . BIND(?this AS ?pfs1t180) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn31))) AS ?pfsb28) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn32))) AS ?pfse29) . FILTER (REGEX('[ARNDCQEGHILKMFPSTWYVBZJUOX][ARNDCQEGHILKMFPSTWYVBZJUOX]D', SUBSTR(?thisSequenceValue, ?thisPositionOn31, (?thisPositionOn32 - ?thisPositionOn31)))) . BIND(URI(CONCAT(STR(?this), '#MF_00011a27')) AS ?annotation27) . BIND(?this AS ?pfs26) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch185 faldo:location ?templateMotifSequenceMatchRegionP0A7D4186 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0A7D4188 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP0A7D4MF_00011181 . ?templateMotifSequenceMatchRegionP0A7D4186 faldo:begin ?templateMotifSequenceMatchBeginP0A7D4187 . ?templateMotifSequenceMatchBeginP0A7D4187 faldo:position ?templateMotifSequenceMatchBeginPositionP0A7D4182 ; faldo:reference isoform:P0A7D4-1 . ?templateMotifSequenceProfileAlignmentOperationP0A7D4188 edam:has_input signature:MF_00011 ; rdf:type edam:operation_0300 . ?targetMotifMatch189 faldo:location ?targetMotifMatchRegionMatch190 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00011192 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP0A7D4MF_00011183 . ?targetMotifMatchRegionMatch190 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00011191 . ?targetMotifMatchRegionMatchBeginMF_00011191 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00011184 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_00011192 edam:has_input signature:MF_00011 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0A7D4MF_00011181, 1, (STRLEN(?templateMotifCigarP0A7D4MF_00011181) - STRLEN(REPLACE(?templateMotifCigarP0A7D4MF_00011181, CONCAT('^(?:-*[^-]){', STR(((415 - ?templateMotifSequenceMatchBeginPositionP0A7D4182) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1193) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0A7D4MF_00011183, 1, (STRLEN(?targetMotifMatchCigarP0A7D4MF_00011183) - STRLEN(REPLACE(?targetMotifMatchCigarP0A7D4MF_00011183, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1193), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0A7D4MF_00011183, 1, (STRLEN(?targetMotifMatchCigarP0A7D4MF_00011183) - STRLEN(REPLACE(?targetMotifMatchCigarP0A7D4MF_00011183, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1193), '}'), '')))), '[^-]', ''))) AS ?step2194) . BIND(((?step2194 + ?targetMotifMatchRegionMatchBeginPositionMF_00011184) - 1) AS ?thisPositionOn38) . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0A7D4MF_00011181, 1, (STRLEN(?templateMotifCigarP0A7D4MF_00011181) - STRLEN(REPLACE(?templateMotifCigarP0A7D4MF_00011181, CONCAT('^(?:-*[^-]){', STR(((417 - ?templateMotifSequenceMatchBeginPositionP0A7D4182) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1195) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0A7D4MF_00011183, 1, (STRLEN(?targetMotifMatchCigarP0A7D4MF_00011183) - STRLEN(REPLACE(?targetMotifMatchCigarP0A7D4MF_00011183, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1195), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0A7D4MF_00011183, 1, (STRLEN(?targetMotifMatchCigarP0A7D4MF_00011183) - STRLEN(REPLACE(?targetMotifMatchCigarP0A7D4MF_00011183, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1195), '}'), '')))), '[^-]', ''))) AS ?step2196) . BIND(((?step2196 + ?targetMotifMatchRegionMatchBeginPositionMF_00011184) - 1) AS ?thisPositionOn39) . BIND(?this AS ?pfs1t197) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn38))) AS ?pfsb35) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn39))) AS ?pfse36) . FILTER (REGEX('[ARNDCQEGHILKMFPSTWYVBZJUOX][ARNDCQEGHILKMFPSTWYVBZJUOX][GS]', SUBSTR(?thisSequenceValue, ?thisPositionOn38, (?thisPositionOn39 - ?thisPositionOn38)))) . BIND(URI(CONCAT(STR(?this), '#MF_00011a34')) AS ?annotation34) . BIND(?this AS ?pfs33) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch202 faldo:location ?templateMotifSequenceMatchRegionP0A7D4203 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0A7D4205 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP0A7D4MF_00011198 . ?templateMotifSequenceMatchRegionP0A7D4203 faldo:begin ?templateMotifSequenceMatchBeginP0A7D4204 . ?templateMotifSequenceMatchBeginP0A7D4204 faldo:position ?templateMotifSequenceMatchBeginPositionP0A7D4199 ; faldo:reference isoform:P0A7D4-1 . ?templateMotifSequenceProfileAlignmentOperationP0A7D4205 edam:has_input signature:MF_00011 ; rdf:type edam:operation_0300 . ?targetMotifMatch206 faldo:location ?targetMotifMatchRegionMatch207 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00011209 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP0A7D4MF_00011200 . ?targetMotifMatchRegionMatch207 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00011208 . ?targetMotifMatchRegionMatchBeginMF_00011208 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00011201 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_00011209 edam:has_input signature:MF_00011 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0A7D4MF_00011198, 1, (STRLEN(?templateMotifCigarP0A7D4MF_00011198) - STRLEN(REPLACE(?templateMotifCigarP0A7D4MF_00011198, CONCAT('^(?:-*[^-]){', STR(((14 - ?templateMotifSequenceMatchBeginPositionP0A7D4199) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1210) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0A7D4MF_00011200, 1, (STRLEN(?targetMotifMatchCigarP0A7D4MF_00011200) - STRLEN(REPLACE(?targetMotifMatchCigarP0A7D4MF_00011200, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1210), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0A7D4MF_00011200, 1, (STRLEN(?targetMotifMatchCigarP0A7D4MF_00011200) - STRLEN(REPLACE(?targetMotifMatchCigarP0A7D4MF_00011200, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1210), '}'), '')))), '[^-]', ''))) AS ?step2211) . BIND(((?step2211 + ?targetMotifMatchRegionMatchBeginPositionMF_00011201) - 1) AS ?thisPositionOn45) . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0A7D4MF_00011198, 1, (STRLEN(?templateMotifCigarP0A7D4MF_00011198) - STRLEN(REPLACE(?templateMotifCigarP0A7D4MF_00011198, CONCAT('^(?:-*[^-]){', STR(((17 - ?templateMotifSequenceMatchBeginPositionP0A7D4199) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1212) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0A7D4MF_00011200, 1, (STRLEN(?targetMotifMatchCigarP0A7D4MF_00011200) - STRLEN(REPLACE(?targetMotifMatchCigarP0A7D4MF_00011200, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1212), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0A7D4MF_00011200, 1, (STRLEN(?targetMotifMatchCigarP0A7D4MF_00011200) - STRLEN(REPLACE(?targetMotifMatchCigarP0A7D4MF_00011200, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1212), '}'), '')))), '[^-]', ''))) AS ?step2213) . BIND(((?step2213 + ?targetMotifMatchRegionMatchBeginPositionMF_00011201) - 1) AS ?thisPositionOn46) . BIND(?this AS ?pfs1t214) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn45))) AS ?pfsb42) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn46))) AS ?pfse43) . FILTER (REGEX('DE[GA]K', SUBSTR(?thisSequenceValue, ?thisPositionOn45, (?thisPositionOn46 - ?thisPositionOn45)))) . BIND(URI(CONCAT(STR(?this), '#MF_00011a41')) AS ?annotation41) . BIND(?this AS ?pfs40) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch219 faldo:location ?templateMotifSequenceMatchRegionP0A7D4220 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0A7D4222 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP0A7D4MF_00011215 . ?templateMotifSequenceMatchRegionP0A7D4220 faldo:begin ?templateMotifSequenceMatchBeginP0A7D4221 . ?templateMotifSequenceMatchBeginP0A7D4221 faldo:position ?templateMotifSequenceMatchBeginPositionP0A7D4216 ; faldo:reference isoform:P0A7D4-1 . ?templateMotifSequenceProfileAlignmentOperationP0A7D4222 edam:has_input signature:MF_00011 ; rdf:type edam:operation_0300 . ?targetMotifMatch223 faldo:location ?targetMotifMatchRegionMatch224 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00011226 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP0A7D4MF_00011217 . ?targetMotifMatchRegionMatch224 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00011225 . ?targetMotifMatchRegionMatchBeginMF_00011225 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00011218 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_00011226 edam:has_input signature:MF_00011 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0A7D4MF_00011215, 1, (STRLEN(?templateMotifCigarP0A7D4MF_00011215) - STRLEN(REPLACE(?templateMotifCigarP0A7D4MF_00011215, CONCAT('^(?:-*[^-]){', STR(((39 - ?templateMotifSequenceMatchBeginPositionP0A7D4216) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1227) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0A7D4MF_00011217, 1, (STRLEN(?targetMotifMatchCigarP0A7D4MF_00011217) - STRLEN(REPLACE(?targetMotifMatchCigarP0A7D4MF_00011217, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1227), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0A7D4MF_00011217, 1, (STRLEN(?targetMotifMatchCigarP0A7D4MF_00011217) - STRLEN(REPLACE(?targetMotifMatchCigarP0A7D4MF_00011217, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1227), '}'), '')))), '[^-]', ''))) AS ?step2228) . BIND(((?step2228 + ?targetMotifMatchRegionMatchBeginPositionMF_00011218) - 1) AS ?thisPositionOn52) . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0A7D4MF_00011215, 1, (STRLEN(?templateMotifCigarP0A7D4MF_00011215) - STRLEN(REPLACE(?templateMotifCigarP0A7D4MF_00011215, CONCAT('^(?:-*[^-]){', STR(((42 - ?templateMotifSequenceMatchBeginPositionP0A7D4216) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1229) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0A7D4MF_00011217, 1, (STRLEN(?targetMotifMatchCigarP0A7D4MF_00011217) - STRLEN(REPLACE(?targetMotifMatchCigarP0A7D4MF_00011217, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1229), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0A7D4MF_00011217, 1, (STRLEN(?targetMotifMatchCigarP0A7D4MF_00011217) - STRLEN(REPLACE(?targetMotifMatchCigarP0A7D4MF_00011217, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1229), '}'), '')))), '[^-]', ''))) AS ?step2230) . BIND(((?step2230 + ?targetMotifMatchRegionMatchBeginPositionMF_00011218) - 1) AS ?thisPositionOn53) . BIND(?this AS ?pfs1t231) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn52))) AS ?pfsb49) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn53))) AS ?pfse50) . FILTER (REGEX('N[AS]GH', SUBSTR(?thisSequenceValue, ?thisPositionOn52, (?thisPositionOn53 - ?thisPositionOn52)))) . BIND(URI(CONCAT(STR(?this), '#MF_00011a48')) AS ?annotation48) . BIND(?this AS ?pfs47) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch236 faldo:location ?templateMotifSequenceMatchRegionP0A7D4237 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0A7D4239 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP0A7D4MF_00011232 . ?templateMotifSequenceMatchRegionP0A7D4237 faldo:begin ?templateMotifSequenceMatchBeginP0A7D4238 . ?templateMotifSequenceMatchBeginP0A7D4238 faldo:position ?templateMotifSequenceMatchBeginPositionP0A7D4233 ; faldo:reference isoform:P0A7D4-1 . ?templateMotifSequenceProfileAlignmentOperationP0A7D4239 edam:has_input signature:MF_00011 ; rdf:type edam:operation_0300 . ?targetMotifMatch240 faldo:location ?targetMotifMatchRegionMatch241 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00011243 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP0A7D4MF_00011234 . ?targetMotifMatchRegionMatch241 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00011242 . ?targetMotifMatchRegionMatchBeginMF_00011242 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00011235 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_00011243 edam:has_input signature:MF_00011 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0A7D4MF_00011232, 1, (STRLEN(?templateMotifCigarP0A7D4MF_00011232) - STRLEN(REPLACE(?templateMotifCigarP0A7D4MF_00011232, CONCAT('^(?:-*[^-]){', STR(((300 - ?templateMotifSequenceMatchBeginPositionP0A7D4233) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1244) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0A7D4MF_00011234, 1, (STRLEN(?targetMotifMatchCigarP0A7D4MF_00011234) - STRLEN(REPLACE(?targetMotifMatchCigarP0A7D4MF_00011234, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1244), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0A7D4MF_00011234, 1, (STRLEN(?targetMotifMatchCigarP0A7D4MF_00011234) - STRLEN(REPLACE(?targetMotifMatchCigarP0A7D4MF_00011234, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1244), '}'), '')))), '[^-]', ''))) AS ?step2245) . BIND(((?step2245 + ?targetMotifMatchRegionMatchBeginPositionMF_00011235) - 1) AS ?thisPositionOn60) . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0A7D4MF_00011232, 1, (STRLEN(?templateMotifCigarP0A7D4MF_00011232) - STRLEN(REPLACE(?templateMotifCigarP0A7D4MF_00011232, CONCAT('^(?:-*[^-]){', STR(((306 - ?templateMotifSequenceMatchBeginPositionP0A7D4233) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1246) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0A7D4MF_00011234, 1, (STRLEN(?targetMotifMatchCigarP0A7D4MF_00011234) - STRLEN(REPLACE(?targetMotifMatchCigarP0A7D4MF_00011234, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1246), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0A7D4MF_00011234, 1, (STRLEN(?targetMotifMatchCigarP0A7D4MF_00011234) - STRLEN(REPLACE(?targetMotifMatchCigarP0A7D4MF_00011234, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1246), '}'), '')))), '[^-]', ''))) AS ?step2247) . BIND(((?step2247 + ?targetMotifMatchRegionMatchBeginPositionMF_00011235) - 1) AS ?thisPositionOn61) . BIND(?this AS ?pfs1t248) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn60))) AS ?pfsb56) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn61))) AS ?pfse57) . FILTER (REGEX('[ARNDCQEGHILKMFPSTWYVBZJUOX][ARNDCQEGHILKMFPSTWYVBZJUOX][ST][ARNDCQEGHILKMFPSTWYVBZJUOX][KR][ARNDCQEGHILKMFPSTWYVBZJUOX]R', SUBSTR(?thisSequenceValue, ?thisPositionOn60, (?thisPositionOn61 - ?thisPositionOn60)))) . BIND(URI(CONCAT(STR(?this), '#MF_00011a55')) AS ?annotation55) . BIND(?this AS ?pfs54) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch253 faldo:location ?templateMotifSequenceMatchRegionP0A7D4254 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0A7D4256 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP0A7D4MF_00011249 . ?templateMotifSequenceMatchRegionP0A7D4254 faldo:begin ?templateMotifSequenceMatchBeginP0A7D4255 . ?templateMotifSequenceMatchBeginP0A7D4255 faldo:position ?templateMotifSequenceMatchBeginPositionP0A7D4250 ; faldo:reference isoform:P0A7D4-1 . ?templateMotifSequenceProfileAlignmentOperationP0A7D4256 edam:has_input signature:MF_00011 ; rdf:type edam:operation_0300 . ?targetMotifMatch257 faldo:location ?targetMotifMatchRegionMatch258 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00011260 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP0A7D4MF_00011251 . ?targetMotifMatchRegionMatch258 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00011259 . ?targetMotifMatchRegionMatchBeginMF_00011259 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00011252 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_00011260 edam:has_input signature:MF_00011 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0A7D4MF_00011249, 1, (STRLEN(?templateMotifCigarP0A7D4MF_00011249) - STRLEN(REPLACE(?templateMotifCigarP0A7D4MF_00011249, CONCAT('^(?:-*[^-]){', STR(((14 - ?templateMotifSequenceMatchBeginPositionP0A7D4250) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1261) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0A7D4MF_00011251, 1, (STRLEN(?targetMotifMatchCigarP0A7D4MF_00011251) - STRLEN(REPLACE(?targetMotifMatchCigarP0A7D4MF_00011251, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1261), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0A7D4MF_00011251, 1, (STRLEN(?targetMotifMatchCigarP0A7D4MF_00011251) - STRLEN(REPLACE(?targetMotifMatchCigarP0A7D4MF_00011251, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1261), '}'), '')))), '[^-]', ''))) AS ?step2262) . BIND(((?step2262 + ?targetMotifMatchRegionMatchBeginPositionMF_00011252) - 1) AS ?thisPositionOn66) . BIND(?thisPositionOn66 AS ?thisPositionOn67) . BIND(?this AS ?pfs1t263) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn66))) AS ?pfsb64) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn67))) AS ?pfse65) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn66, 1) = 'D')) . BIND(URI(CONCAT(STR(?this), '#MF_00011a63')) AS ?annotation63) . BIND(?this AS ?pfs62) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch268 faldo:location ?templateMotifSequenceMatchRegionP0A7D4269 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0A7D4271 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP0A7D4MF_00011264 . ?templateMotifSequenceMatchRegionP0A7D4269 faldo:begin ?templateMotifSequenceMatchBeginP0A7D4270 . ?templateMotifSequenceMatchBeginP0A7D4270 faldo:position ?templateMotifSequenceMatchBeginPositionP0A7D4265 ; faldo:reference isoform:P0A7D4-1 . ?templateMotifSequenceProfileAlignmentOperationP0A7D4271 edam:has_input signature:MF_00011 ; rdf:type edam:operation_0300 . ?targetMotifMatch272 faldo:location ?targetMotifMatchRegionMatch273 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00011275 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP0A7D4MF_00011266 . ?targetMotifMatchRegionMatch273 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00011274 . ?targetMotifMatchRegionMatchBeginMF_00011274 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00011267 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_00011275 edam:has_input signature:MF_00011 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0A7D4MF_00011264, 1, (STRLEN(?templateMotifCigarP0A7D4MF_00011264) - STRLEN(REPLACE(?templateMotifCigarP0A7D4MF_00011264, CONCAT('^(?:-*[^-]){', STR(((42 - ?templateMotifSequenceMatchBeginPositionP0A7D4265) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1276) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0A7D4MF_00011266, 1, (STRLEN(?targetMotifMatchCigarP0A7D4MF_00011266) - STRLEN(REPLACE(?targetMotifMatchCigarP0A7D4MF_00011266, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1276), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0A7D4MF_00011266, 1, (STRLEN(?targetMotifMatchCigarP0A7D4MF_00011266) - STRLEN(REPLACE(?targetMotifMatchCigarP0A7D4MF_00011266, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1276), '}'), '')))), '[^-]', ''))) AS ?step2277) . BIND(((?step2277 + ?targetMotifMatchRegionMatchBeginPositionMF_00011267) - 1) AS ?thisPositionOn72) . BIND(?thisPositionOn72 AS ?thisPositionOn73) . BIND(?this AS ?pfs1t278) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn72))) AS ?pfsb70) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn73))) AS ?pfse71) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn72, 1) = 'H')) . BIND(URI(CONCAT(STR(?this), '#MF_00011a69')) AS ?annotation69) . BIND(?this AS ?pfs68) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch283 faldo:location ?templateMotifSequenceMatchRegionP0A7D4284 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0A7D4286 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP0A7D4MF_00011279 . ?templateMotifSequenceMatchRegionP0A7D4284 faldo:begin ?templateMotifSequenceMatchBeginP0A7D4285 . ?templateMotifSequenceMatchBeginP0A7D4285 faldo:position ?templateMotifSequenceMatchBeginPositionP0A7D4280 ; faldo:reference isoform:P0A7D4-1 . ?templateMotifSequenceProfileAlignmentOperationP0A7D4286 edam:has_input signature:MF_00011 ; rdf:type edam:operation_0300 . ?targetMotifMatch287 faldo:location ?targetMotifMatchRegionMatch288 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00011290 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP0A7D4MF_00011281 . ?targetMotifMatchRegionMatch288 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00011289 . ?targetMotifMatchRegionMatchBeginMF_00011289 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00011282 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_00011290 edam:has_input signature:MF_00011 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0A7D4MF_00011279, 1, (STRLEN(?templateMotifCigarP0A7D4MF_00011279) - STRLEN(REPLACE(?templateMotifCigarP0A7D4MF_00011279, CONCAT('^(?:-*[^-]){', STR(((14 - ?templateMotifSequenceMatchBeginPositionP0A7D4280) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1291) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0A7D4MF_00011281, 1, (STRLEN(?targetMotifMatchCigarP0A7D4MF_00011281) - STRLEN(REPLACE(?targetMotifMatchCigarP0A7D4MF_00011281, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1291), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0A7D4MF_00011281, 1, (STRLEN(?targetMotifMatchCigarP0A7D4MF_00011281) - STRLEN(REPLACE(?targetMotifMatchCigarP0A7D4MF_00011281, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1291), '}'), '')))), '[^-]', ''))) AS ?step2292) . BIND(((?step2292 + ?targetMotifMatchRegionMatchBeginPositionMF_00011282) - 1) AS ?thisPositionOn79) . BIND(?thisPositionOn79 AS ?thisPositionOn80) . BIND(?this AS ?pfs1t293) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn79))) AS ?pfsb76) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn80))) AS ?pfse77) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn79, 1) = 'D')) . BIND(URI(CONCAT(STR(?this), '#MF_00011a75')) AS ?annotation75) . BIND(?this AS ?pfs74) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch298 faldo:location ?templateMotifSequenceMatchRegionP0A7D4299 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0A7D4301 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP0A7D4MF_00011294 . ?templateMotifSequenceMatchRegionP0A7D4299 faldo:begin ?templateMotifSequenceMatchBeginP0A7D4300 . ?templateMotifSequenceMatchBeginP0A7D4300 faldo:position ?templateMotifSequenceMatchBeginPositionP0A7D4295 ; faldo:reference isoform:P0A7D4-1 . ?templateMotifSequenceProfileAlignmentOperationP0A7D4301 edam:has_input signature:MF_00011 ; rdf:type edam:operation_0300 . ?targetMotifMatch302 faldo:location ?targetMotifMatchRegionMatch303 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00011305 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP0A7D4MF_00011296 . ?targetMotifMatchRegionMatch303 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00011304 . ?targetMotifMatchRegionMatchBeginMF_00011304 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00011297 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_00011305 edam:has_input signature:MF_00011 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0A7D4MF_00011294, 1, (STRLEN(?templateMotifCigarP0A7D4MF_00011294) - STRLEN(REPLACE(?templateMotifCigarP0A7D4MF_00011294, CONCAT('^(?:-*[^-]){', STR(((41 - ?templateMotifSequenceMatchBeginPositionP0A7D4295) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1306) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0A7D4MF_00011296, 1, (STRLEN(?targetMotifMatchCigarP0A7D4MF_00011296) - STRLEN(REPLACE(?targetMotifMatchCigarP0A7D4MF_00011296, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1306), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0A7D4MF_00011296, 1, (STRLEN(?targetMotifMatchCigarP0A7D4MF_00011296) - STRLEN(REPLACE(?targetMotifMatchCigarP0A7D4MF_00011296, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1306), '}'), '')))), '[^-]', ''))) AS ?step2307) . BIND(((?step2307 + ?targetMotifMatchRegionMatchBeginPositionMF_00011297) - 1) AS ?thisPositionOn86) . BIND(?thisPositionOn86 AS ?thisPositionOn87) . BIND(?this AS ?pfs1t308) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn86))) AS ?pfsb83) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn87))) AS ?pfse84) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn86, 1) = 'G')) . BIND(URI(CONCAT(STR(?this), '#MF_00011a82')) AS ?annotation82) . BIND(?this AS ?pfs81) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch313 faldo:location ?templateMotifSequenceMatchRegionP0A7D4314 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0A7D4316 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP0A7D4MF_00011309 . ?templateMotifSequenceMatchRegionP0A7D4314 faldo:begin ?templateMotifSequenceMatchBeginP0A7D4315 . ?templateMotifSequenceMatchBeginP0A7D4315 faldo:position ?templateMotifSequenceMatchBeginPositionP0A7D4310 ; faldo:reference isoform:P0A7D4-1 . ?templateMotifSequenceProfileAlignmentOperationP0A7D4316 edam:has_input signature:MF_00011 ; rdf:type edam:operation_0300 . ?targetMotifMatch317 faldo:location ?targetMotifMatchRegionMatch318 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00011320 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP0A7D4MF_00011311 . ?targetMotifMatchRegionMatch318 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00011319 . ?targetMotifMatchRegionMatchBeginMF_00011319 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00011312 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_00011320 edam:has_input signature:MF_00011 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0A7D4MF_00011309, 1, (STRLEN(?templateMotifCigarP0A7D4MF_00011309) - STRLEN(REPLACE(?templateMotifCigarP0A7D4MF_00011309, CONCAT('^(?:-*[^-]){', STR(((130 - ?templateMotifSequenceMatchBeginPositionP0A7D4310) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1321) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0A7D4MF_00011311, 1, (STRLEN(?targetMotifMatchCigarP0A7D4MF_00011311) - STRLEN(REPLACE(?targetMotifMatchCigarP0A7D4MF_00011311, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1321), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0A7D4MF_00011311, 1, (STRLEN(?targetMotifMatchCigarP0A7D4MF_00011311) - STRLEN(REPLACE(?targetMotifMatchCigarP0A7D4MF_00011311, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1321), '}'), '')))), '[^-]', ''))) AS ?step2322) . BIND(((?step2322 + ?targetMotifMatchRegionMatchBeginPositionMF_00011312) - 1) AS ?thisPositionOn93) . BIND(?thisPositionOn93 AS ?thisPositionOn94) . BIND(?this AS ?pfs1t323) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn93))) AS ?pfsb90) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn94))) AS ?pfse91) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn93, 1) = 'T')) . BIND(URI(CONCAT(STR(?this), '#MF_00011a89')) AS ?annotation89) . BIND(?this AS ?pfs88) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch328 faldo:location ?templateMotifSequenceMatchRegionP0A7D4329 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0A7D4331 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP0A7D4MF_00011324 . ?templateMotifSequenceMatchRegionP0A7D4329 faldo:begin ?templateMotifSequenceMatchBeginP0A7D4330 . ?templateMotifSequenceMatchBeginP0A7D4330 faldo:position ?templateMotifSequenceMatchBeginPositionP0A7D4325 ; faldo:reference isoform:P0A7D4-1 . ?templateMotifSequenceProfileAlignmentOperationP0A7D4331 edam:has_input signature:MF_00011 ; rdf:type edam:operation_0300 . ?targetMotifMatch332 faldo:location ?targetMotifMatchRegionMatch333 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00011335 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP0A7D4MF_00011326 . ?targetMotifMatchRegionMatch333 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00011334 . ?targetMotifMatchRegionMatchBeginMF_00011334 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00011327 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_00011335 edam:has_input signature:MF_00011 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0A7D4MF_00011324, 1, (STRLEN(?templateMotifCigarP0A7D4MF_00011324) - STRLEN(REPLACE(?templateMotifCigarP0A7D4MF_00011324, CONCAT('^(?:-*[^-]){', STR(((144 - ?templateMotifSequenceMatchBeginPositionP0A7D4325) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1336) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0A7D4MF_00011326, 1, (STRLEN(?targetMotifMatchCigarP0A7D4MF_00011326) - STRLEN(REPLACE(?targetMotifMatchCigarP0A7D4MF_00011326, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1336), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0A7D4MF_00011326, 1, (STRLEN(?targetMotifMatchCigarP0A7D4MF_00011326) - STRLEN(REPLACE(?targetMotifMatchCigarP0A7D4MF_00011326, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1336), '}'), '')))), '[^-]', ''))) AS ?step2337) . BIND(((?step2337 + ?targetMotifMatchRegionMatchBeginPositionMF_00011327) - 1) AS ?thisPositionOn100) . BIND(?thisPositionOn100 AS ?thisPositionOn101) . BIND(?this AS ?pfs1t338) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn100))) AS ?pfsb97) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn101))) AS ?pfse98) . FILTER (REGEX('[KR]', SUBSTR(?thisSequenceValue, ?thisPositionOn100, 1))) . BIND(URI(CONCAT(STR(?this), '#MF_00011a96')) AS ?annotation96) . BIND(?this AS ?pfs95) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch343 faldo:location ?templateMotifSequenceMatchRegionP0A7D4344 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0A7D4346 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP0A7D4MF_00011339 . ?templateMotifSequenceMatchRegionP0A7D4344 faldo:begin ?templateMotifSequenceMatchBeginP0A7D4345 . ?templateMotifSequenceMatchBeginP0A7D4345 faldo:position ?templateMotifSequenceMatchBeginPositionP0A7D4340 ; faldo:reference isoform:P0A7D4-1 . ?templateMotifSequenceProfileAlignmentOperationP0A7D4346 edam:has_input signature:MF_00011 ; rdf:type edam:operation_0300 . ?targetMotifMatch347 faldo:location ?targetMotifMatchRegionMatch348 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00011350 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP0A7D4MF_00011341 . ?targetMotifMatchRegionMatch348 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00011349 . ?targetMotifMatchRegionMatchBeginMF_00011349 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00011342 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_00011350 edam:has_input signature:MF_00011 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0A7D4MF_00011339, 1, (STRLEN(?templateMotifCigarP0A7D4MF_00011339) - STRLEN(REPLACE(?templateMotifCigarP0A7D4MF_00011339, CONCAT('^(?:-*[^-]){', STR(((225 - ?templateMotifSequenceMatchBeginPositionP0A7D4340) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1351) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0A7D4MF_00011341, 1, (STRLEN(?targetMotifMatchCigarP0A7D4MF_00011341) - STRLEN(REPLACE(?targetMotifMatchCigarP0A7D4MF_00011341, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1351), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0A7D4MF_00011341, 1, (STRLEN(?targetMotifMatchCigarP0A7D4MF_00011341) - STRLEN(REPLACE(?targetMotifMatchCigarP0A7D4MF_00011341, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1351), '}'), '')))), '[^-]', ''))) AS ?step2352) . BIND(((?step2352 + ?targetMotifMatchRegionMatchBeginPositionMF_00011342) - 1) AS ?thisPositionOn107) . BIND(?thisPositionOn107 AS ?thisPositionOn108) . BIND(?this AS ?pfs1t353) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn107))) AS ?pfsb104) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn108))) AS ?pfse105) . FILTER (REGEX('[QN]', SUBSTR(?thisSequenceValue, ?thisPositionOn107, 1))) . BIND(URI(CONCAT(STR(?this), '#MF_00011a103')) AS ?annotation103) . BIND(?this AS ?pfs102) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch358 faldo:location ?templateMotifSequenceMatchRegionP0A7D4359 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0A7D4361 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP0A7D4MF_00011354 . ?templateMotifSequenceMatchRegionP0A7D4359 faldo:begin ?templateMotifSequenceMatchBeginP0A7D4360 . ?templateMotifSequenceMatchBeginP0A7D4360 faldo:position ?templateMotifSequenceMatchBeginPositionP0A7D4355 ; faldo:reference isoform:P0A7D4-1 . ?templateMotifSequenceProfileAlignmentOperationP0A7D4361 edam:has_input signature:MF_00011 ; rdf:type edam:operation_0300 . ?targetMotifMatch362 faldo:location ?targetMotifMatchRegionMatch363 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00011365 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP0A7D4MF_00011356 . ?targetMotifMatchRegionMatch363 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00011364 . ?targetMotifMatchRegionMatchBeginMF_00011364 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00011357 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_00011365 edam:has_input signature:MF_00011 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0A7D4MF_00011354, 1, (STRLEN(?templateMotifCigarP0A7D4MF_00011354) - STRLEN(REPLACE(?templateMotifCigarP0A7D4MF_00011354, CONCAT('^(?:-*[^-]){', STR(((240 - ?templateMotifSequenceMatchBeginPositionP0A7D4355) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1366) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0A7D4MF_00011356, 1, (STRLEN(?targetMotifMatchCigarP0A7D4MF_00011356) - STRLEN(REPLACE(?targetMotifMatchCigarP0A7D4MF_00011356, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1366), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0A7D4MF_00011356, 1, (STRLEN(?targetMotifMatchCigarP0A7D4MF_00011356) - STRLEN(REPLACE(?targetMotifMatchCigarP0A7D4MF_00011356, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1366), '}'), '')))), '[^-]', ''))) AS ?step2367) . BIND(((?step2367 + ?targetMotifMatchRegionMatchBeginPositionMF_00011357) - 1) AS ?thisPositionOn114) . BIND(?thisPositionOn114 AS ?thisPositionOn115) . BIND(?this AS ?pfs1t368) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn114))) AS ?pfsb111) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn115))) AS ?pfse112) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn114, 1) = 'T')) . BIND(URI(CONCAT(STR(?this), '#MF_00011a110')) AS ?annotation110) . BIND(?this AS ?pfs109) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch373 faldo:location ?templateMotifSequenceMatchRegionP0A7D4374 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0A7D4376 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP0A7D4MF_00011369 . ?templateMotifSequenceMatchRegionP0A7D4374 faldo:begin ?templateMotifSequenceMatchBeginP0A7D4375 . ?templateMotifSequenceMatchBeginP0A7D4375 faldo:position ?templateMotifSequenceMatchBeginPositionP0A7D4370 ; faldo:reference isoform:P0A7D4-1 . ?templateMotifSequenceProfileAlignmentOperationP0A7D4376 edam:has_input signature:MF_00011 ; rdf:type edam:operation_0300 . ?targetMotifMatch377 faldo:location ?targetMotifMatchRegionMatch378 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00011380 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP0A7D4MF_00011371 . ?targetMotifMatchRegionMatch378 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00011379 . ?targetMotifMatchRegionMatchBeginMF_00011379 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00011372 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_00011380 edam:has_input signature:MF_00011 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0A7D4MF_00011369, 1, (STRLEN(?templateMotifCigarP0A7D4MF_00011369) - STRLEN(REPLACE(?templateMotifCigarP0A7D4MF_00011369, CONCAT('^(?:-*[^-]){', STR(((304 - ?templateMotifSequenceMatchBeginPositionP0A7D4370) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1381) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0A7D4MF_00011371, 1, (STRLEN(?targetMotifMatchCigarP0A7D4MF_00011371) - STRLEN(REPLACE(?targetMotifMatchCigarP0A7D4MF_00011371, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1381), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0A7D4MF_00011371, 1, (STRLEN(?targetMotifMatchCigarP0A7D4MF_00011371) - STRLEN(REPLACE(?targetMotifMatchCigarP0A7D4MF_00011371, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1381), '}'), '')))), '[^-]', ''))) AS ?step2382) . BIND(((?step2382 + ?targetMotifMatchRegionMatchBeginPositionMF_00011372) - 1) AS ?thisPositionOn121) . BIND(?thisPositionOn121 AS ?thisPositionOn122) . BIND(?this AS ?pfs1t383) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn121))) AS ?pfsb118) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn122))) AS ?pfse119) . FILTER (REGEX('[KR]', SUBSTR(?thisSequenceValue, ?thisPositionOn121, 1))) . BIND(URI(CONCAT(STR(?this), '#MF_00011a117')) AS ?annotation117) . BIND(?this AS ?pfs116) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch388 faldo:location ?templateMotifSequenceMatchRegionP0A7D4389 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0A7D4391 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP0A7D4MF_00011384 . ?templateMotifSequenceMatchRegionP0A7D4389 faldo:begin ?templateMotifSequenceMatchBeginP0A7D4390 . ?templateMotifSequenceMatchBeginP0A7D4390 faldo:position ?templateMotifSequenceMatchBeginPositionP0A7D4385 ; faldo:reference isoform:P0A7D4-1 . ?templateMotifSequenceProfileAlignmentOperationP0A7D4391 edam:has_input signature:MF_00011 ; rdf:type edam:operation_0300 . ?targetMotifMatch392 faldo:location ?targetMotifMatchRegionMatch393 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00011395 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP0A7D4MF_00011386 . ?targetMotifMatchRegionMatch393 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00011394 . ?targetMotifMatchRegionMatchBeginMF_00011394 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00011387 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_00011395 edam:has_input signature:MF_00011 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0A7D4MF_00011384, 1, (STRLEN(?templateMotifCigarP0A7D4MF_00011384) - STRLEN(REPLACE(?templateMotifCigarP0A7D4MF_00011384, CONCAT('^(?:-*[^-]){', STR(((306 - ?templateMotifSequenceMatchBeginPositionP0A7D4385) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1396) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0A7D4MF_00011386, 1, (STRLEN(?targetMotifMatchCigarP0A7D4MF_00011386) - STRLEN(REPLACE(?targetMotifMatchCigarP0A7D4MF_00011386, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1396), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0A7D4MF_00011386, 1, (STRLEN(?targetMotifMatchCigarP0A7D4MF_00011386) - STRLEN(REPLACE(?targetMotifMatchCigarP0A7D4MF_00011386, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1396), '}'), '')))), '[^-]', ''))) AS ?step2397) . BIND(((?step2397 + ?targetMotifMatchRegionMatchBeginPositionMF_00011387) - 1) AS ?thisPositionOn128) . BIND(?thisPositionOn128 AS ?thisPositionOn129) . BIND(?this AS ?pfs1t398) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn128))) AS ?pfsb125) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn129))) AS ?pfse126) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn128, 1) = 'R')) . BIND(URI(CONCAT(STR(?this), '#MF_00011a124')) AS ?annotation124) . BIND(?this AS ?pfs123) . } }