CONSTRUCT { _:37335 up:source unirule:MF_00097 . _:37336 up:source unirule:MF_00097 . _:37337 up:source unirule:MF_00097 . _:37338 up:source unirule:MF_00097 . _:37339 up:source unirule:MF_00097 . _:37340 up:source unirule:MF_00097 . _:37341 up:source unirule:MF_00097 . _:37342 up:source unirule:MF_00097 . _:37343 up:source unirule:MF_00097 . _:37344 up:source unirule:MF_00097 . _:37345 up:source unirule:MF_00097 . _:37346 up:source unirule:MF_00097 . _:37347 up:source unirule:MF_00097 . _:37348 up:source unirule:MF_00097 . _:37349 up:source unirule:MF_00097 . _:37350 up:source unirule:MF_00097 . _:37351 up:source unirule:MF_00097 . _:37352 up:source unirule:MF_00097 . _:37353 up:source unirule:MF_00097 . _:37354 up:source unirule:MF_00097 . _:37355 up:source unirule:MF_00097 . _:37356 up:source unirule:MF_00097 . _:37357 up:source unirule:MF_00097 . _:37358 up:source unirule:MF_00097 . _:37359 up:source unirule:MF_00097 . ?this up:alternativeName ?name1 ; up:annotation ?annotation3 , ?annotation4 , ?annotation6 , ?annotation8 , ?annotation10 , ?annotation11 ; up:classifiedWith GO:0000287 , GO:0004789 , GO:0009229 , keyword:784 , keyword:808 ; up:recommendedName ?name0 . ?name0 up:ecName '2.5.1.3' ; up:fullName 'Thiamine-phosphate synthase' ; up:shortName 'TP synthase' , 'TPS' ; rdf:type up:Structured_Name . ?name1 up:fullName 'Thiamine-phosphate pyrophosphorylase' ; up:shortName 'TMP pyrophosphorylase' , 'TMP-PPase' ; rdf:type up:Structured_Name . ?gene2 skos:prefLabel 'thiE' . ?annotation3 a up:Function_Annotation ; rdfs:comment 'Condenses 4-methyl-5-(beta-hydroxyethyl)thiazole monophosphate (THZ-P) and 2-methyl-4-amino-5-hydroxymethyl pyrimidine pyrophosphate (HMP-PP) to form thiamine monophosphate (TMP).' . ?annotation4 up:activity ?activity5 ; rdf:type up:Catalytic_Activity_Annotation . ?activity5 up:catalyticActivity <http://rdf.rhea-db.org/47844>; up:enzymeClass <http://purl.uniprot.org/enzyme/2.5.1.3>. ?annotation6 up:activity ?activity7 ; rdf:type up:Catalytic_Activity_Annotation . ?activity7 up:catalyticActivity <http://rdf.rhea-db.org/47848>; up:enzymeClass <http://purl.uniprot.org/enzyme/2.5.1.3>. ?annotation8 up:activity ?activity9 ; rdf:type up:Catalytic_Activity_Annotation . ?activity9 up:catalyticActivity <http://rdf.rhea-db.org/22328>; up:enzymeClass <http://purl.uniprot.org/enzyme/2.5.1.3>. ?annotation10 a up:Pathway_Annotation ; rdfs:comment 'Cofactor biosynthesis; thiamine diphosphate biosynthesis; thiamine phosphate from 4-amino-2-methyl-5-diphosphomethylpyrimidine and 4-methyl-5-(2-phosphoethyl)-thiazole: step 1/1.' . ?annotation11 a up:Similarity_Annotation ; rdfs:comment 'Belongs to the thiamine-phosphate synthase family.' . ?case12 up:classifiedWith keyword:460 , keyword:479 . ?pfs13 up:annotation ?annotation14 . ?annotation14 faldo:begin ?pfsb15 ; faldo:end ?pfse16 ; up:ligand ?ligand17 ; rdf:type up:Binding_Site_Annotation . ?pfsb15 faldo:position ?thisPositionOn18 ; rdf:type faldo:ExactPosition . ?pfse16 faldo:position ?thisPositionOn19 ; rdf:type faldo:ExactPosition . ?ligand17 rdfs:subClassOf chebi:18420 . ?pfs20 up:annotation ?annotation21 . ?annotation21 faldo:begin ?pfsb22 ; faldo:end ?pfse23 ; up:ligand ?ligand24 ; rdf:type up:Binding_Site_Annotation . ?pfsb22 faldo:position ?thisPositionOn25 ; rdf:type faldo:ExactPosition . ?pfse23 faldo:position ?thisPositionOn26 ; rdf:type faldo:ExactPosition . ?ligand24 rdfs:subClassOf chebi:18420 . ?pfs27 up:annotation ?annotation28 . ?annotation28 faldo:begin ?pfsb29 ; faldo:end ?pfse30 ; up:ligand ?ligand31 ; rdf:type up:Binding_Site_Annotation . ?pfsb29 faldo:position ?thisPositionOn32 ; rdf:type faldo:ExactPosition . ?pfse30 faldo:position ?thisPositionOn33 ; rdf:type faldo:ExactPosition . ?ligand31 rdfs:subClassOf chebi:57841 . ?pfs34 up:annotation ?annotation35 . ?annotation35 faldo:begin ?pfsb36 ; faldo:end ?pfse37 ; up:ligand ?ligand38 ; rdf:type up:Binding_Site_Annotation . ?pfsb36 faldo:position ?thisPositionOn39 ; rdf:type faldo:ExactPosition . ?pfse37 faldo:position ?thisPositionOn40 ; rdf:type faldo:ExactPosition . ?ligand38 rdfs:subClassOf chebi:62899 . ?pfs41 up:annotation ?annotation42 . ?annotation42 faldo:begin ?pfsb43 ; faldo:end ?pfse44 ; up:ligand ?ligand45 ; rdf:type up:Binding_Site_Annotation . ?pfsb43 faldo:position ?thisPositionOn46 ; rdf:type faldo:ExactPosition . ?pfse44 faldo:position ?thisPositionOn47 ; rdf:type faldo:ExactPosition . ?ligand45 rdfs:subClassOf chebi:62899 . ?pfs48 up:annotation ?annotation49 . ?annotation49 faldo:begin ?pfsb50 ; faldo:end ?pfse51 ; up:ligand ?ligand52 ; rdf:type up:Binding_Site_Annotation . ?pfsb50 faldo:position ?thisPositionOn53 ; rdf:type faldo:ExactPosition . ?pfse51 faldo:position ?thisPositionOn54 ; rdf:type faldo:ExactPosition . ?ligand52 rdfs:subClassOf chebi:57841 . ?pfs55 up:annotation ?annotation56 . ?annotation56 faldo:begin ?pfsb57 ; faldo:end ?pfse58 ; up:ligand ?ligand59 ; rdf:type up:Binding_Site_Annotation . ?pfsb57 faldo:position ?thisPositionOn60 ; rdf:type faldo:ExactPosition . ?pfse58 faldo:position ?thisPositionOn61 ; rdf:type faldo:ExactPosition . ?ligand59 rdfs:subClassOf chebi:57841 . ?pfs62 up:annotation ?annotation63 . ?annotation63 faldo:begin ?pfsb64 ; faldo:end ?pfse65 ; up:ligand ?ligand66 ; rdf:type up:Binding_Site_Annotation . ?pfsb64 faldo:position ?thisPositionOn67 ; rdf:type faldo:ExactPosition . ?pfse65 faldo:position ?thisPositionOn68 ; rdf:type faldo:ExactPosition . ?ligand66 rdfs:subClassOf chebi:57841 . ?pfs69 up:annotation ?annotation70 . ?annotation70 faldo:begin ?pfsb71 ; faldo:end ?pfse72 ; up:ligand ?ligand73 ; rdf:type up:Binding_Site_Annotation . ?pfsb71 faldo:position ?thisPositionOn74 ; rdf:type faldo:ExactPosition . ?pfse72 faldo:position ?thisPositionOn75 ; rdf:type faldo:ExactPosition . ?ligand73 rdfs:subClassOf chebi:62899 . _:37360 a rdf:Statement ; up:attribution _:37335 ; rdf:subject ?this ; rdf:predicate up:recommendedName ; rdf:object ?name0 . _:37361 a rdf:Statement ; up:attribution _:37336 ; rdf:subject ?this ; rdf:predicate up:alternativeName ; rdf:object ?name1 . _:37362 a rdf:Statement ; up:attribution _:37337 ; rdf:subject ?gene2 ; rdf:predicate up:encodedBy ; rdf:object ?gene2 . _:37363 a rdf:Statement ; up:attribution _:37338 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation3 . _:37364 a rdf:Statement ; up:attribution _:37339 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation4 . _:37365 a rdf:Statement ; up:attribution _:37340 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation6 . _:37366 a rdf:Statement ; up:attribution _:37341 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation8 . _:37367 a rdf:Statement ; up:attribution _:37342 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation10 . _:37368 a rdf:Statement ; up:attribution _:37343 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation11 . _:37369 a rdf:Statement ; up:attribution _:37344 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:784 . _:37370 a rdf:Statement ; up:attribution _:37345 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:808 . _:37371 a rdf:Statement ; up:attribution _:37346 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object GO:0000287 . _:37372 a rdf:Statement ; up:attribution _:37347 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object GO:0004789 . _:37373 a rdf:Statement ; up:attribution _:37348 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object GO:0009229 . _:37374 a rdf:Statement ; up:attribution _:37349 ; rdf:subject ?case12 ; rdf:predicate up:classifiedWith ; rdf:object keyword:460 . _:37375 a rdf:Statement ; up:attribution _:37350 ; rdf:subject ?case12 ; rdf:predicate up:classifiedWith ; rdf:object keyword:479 . _:37376 a rdf:Statement ; up:source unirule:MF_00097 ; rdf:subject ?pfs13 ; rdf:predicate up:annotation ; rdf:object ?annotation14 . _:37377 a rdf:Statement ; up:attribution _:37351 ; rdf:subject ?pfs13 ; rdf:predicate up:annotation ; rdf:object ?annotation14 . _:37378 a rdf:Statement ; up:source unirule:MF_00097 ; rdf:subject ?pfs20 ; rdf:predicate up:annotation ; rdf:object ?annotation21 . _:37379 a rdf:Statement ; up:attribution _:37352 ; rdf:subject ?pfs20 ; rdf:predicate up:annotation ; rdf:object ?annotation21 . _:37380 a rdf:Statement ; up:source unirule:MF_00097 ; rdf:subject ?pfs27 ; rdf:predicate up:annotation ; rdf:object ?annotation28 . _:37381 a rdf:Statement ; up:attribution _:37353 ; rdf:subject ?pfs27 ; rdf:predicate up:annotation ; rdf:object ?annotation28 . _:37382 a rdf:Statement ; up:source unirule:MF_00097 ; rdf:subject ?pfs34 ; rdf:predicate up:annotation ; rdf:object ?annotation35 . _:37383 a rdf:Statement ; up:attribution _:37354 ; rdf:subject ?pfs34 ; rdf:predicate up:annotation ; rdf:object ?annotation35 . _:37384 a rdf:Statement ; up:source unirule:MF_00097 ; rdf:subject ?pfs41 ; rdf:predicate up:annotation ; rdf:object ?annotation42 . _:37385 a rdf:Statement ; up:attribution _:37355 ; rdf:subject ?pfs41 ; rdf:predicate up:annotation ; rdf:object ?annotation42 . _:37386 a rdf:Statement ; up:source unirule:MF_00097 ; rdf:subject ?pfs48 ; rdf:predicate up:annotation ; rdf:object ?annotation49 . _:37387 a rdf:Statement ; up:attribution _:37356 ; rdf:subject ?pfs48 ; rdf:predicate up:annotation ; rdf:object ?annotation49 . _:37388 a rdf:Statement ; up:source unirule:MF_00097 ; rdf:subject ?pfs55 ; rdf:predicate up:annotation ; rdf:object ?annotation56 . _:37389 a rdf:Statement ; up:attribution _:37357 ; rdf:subject ?pfs55 ; rdf:predicate up:annotation ; rdf:object ?annotation56 . _:37390 a rdf:Statement ; up:source unirule:MF_00097 ; rdf:subject ?pfs62 ; rdf:predicate up:annotation ; rdf:object ?annotation63 . _:37391 a rdf:Statement ; up:attribution _:37358 ; rdf:subject ?pfs62 ; rdf:predicate up:annotation ; rdf:object ?annotation63 . _:37392 a rdf:Statement ; up:source unirule:MF_00097 ; rdf:subject ?pfs69 ; rdf:predicate up:annotation ; rdf:object ?annotation70 . _:37393 a rdf:Statement ; up:attribution _:37359 ; rdf:subject ?pfs69 ; rdf:predicate up:annotation ; rdf:object ?annotation70 . } WHERE { #baseURI: http://purl.uniprot.org/unirule/MF_00097 #Rule MF_00097 Created by:? on:2005-02-28 Modified by:Edouard de Castro on:2024-09-03 VALUES ?supertaxon76 {taxon:2 taxon:2157} ?this up:organism ?thisOrganism ; rdfs:seeAlso signature:MF_00097 . ?thisOrganism rdfs:subClassOf+ ?supertaxon76 . FILTER (! (EXISTS { ?this rdfs:seeAlso signature:MF_01327 . })) . FILTER (! (EXISTS { ?thisOrganism rdfs:subClassOf+ taxon:1117 . })) . BIND(URI(CONCAT(STR(?this), '#MF_00097a0')) AS ?name0) . BIND(URI(CONCAT(STR(?this), '#MF_00097a1')) AS ?name1) . BIND(URI(CONCAT(STR(?this), '#MF_00097a3')) AS ?annotation3) . BIND(URI(CONCAT(STR(?this), '#MF_00097a4')) AS ?annotation4) . BIND(URI(CONCAT(STR(?this), '#MF_00097a6')) AS ?annotation6) . BIND(URI(CONCAT(STR(?this), '#MF_00097a8')) AS ?annotation8) . BIND(URI(CONCAT(STR(?this), '#MF_00097a10')) AS ?annotation10) . BIND(URI(CONCAT(STR(?this), '#MF_00097a11')) AS ?annotation11) . OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch81 faldo:location ?templateMotifSequenceMatchRegionP3959482 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP3959484 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP39594MF_0009777 . ?templateMotifSequenceMatchRegionP3959482 faldo:begin ?templateMotifSequenceMatchBeginP3959483 . ?templateMotifSequenceMatchBeginP3959483 faldo:position ?templateMotifSequenceMatchBeginPositionP3959478 ; faldo:reference isoform:P39594-1 . ?templateMotifSequenceProfileAlignmentOperationP3959484 edam:has_input signature:MF_00097 ; rdf:type edam:operation_0300 . ?targetMotifMatch85 faldo:location ?targetMotifMatchRegionMatch86 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0009788 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP39594MF_0009779 . ?targetMotifMatchRegionMatch86 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0009787 . ?targetMotifMatchRegionMatchBeginMF_0009787 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0009780 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_0009788 edam:has_input signature:MF_00097 ; rdf:type edam:operation_0300 . BIND(?this AS ?tagFT_4) . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP39594MF_0009777, 1, (STRLEN(?templateMotifCigarP39594MF_0009777) - STRLEN(REPLACE(?templateMotifCigarP39594MF_0009777, CONCAT('^(?:-*[^-]){', STR(((80 - ?templateMotifSequenceMatchBeginPositionP3959478) + 1)), '}'), '')))), '[a-z]', '')) AS ?step189) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP39594MF_0009779, 1, (STRLEN(?targetMotifMatchCigarP39594MF_0009779) - STRLEN(REPLACE(?targetMotifMatchCigarP39594MF_0009779, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step189), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP39594MF_0009779, 1, (STRLEN(?targetMotifMatchCigarP39594MF_0009779) - STRLEN(REPLACE(?targetMotifMatchCigarP39594MF_0009779, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step189), '}'), '')))), '[^-]', ''))) AS ?step290) . BIND(((?step290 + ?targetMotifMatchRegionMatchBeginPositionMF_0009780) - 1) AS ?thisPositionOn18) . BIND(?thisPositionOn18 AS ?thisPositionOn19) . BIND(?this AS ?pfs1t91) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn18))) AS ?pfsb15) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn19))) AS ?pfse16) . FILTER (REGEX('[DE]', SUBSTR(?thisSequenceValue, ?thisPositionOn18, 1))) . BIND(?this AS ?pfs13) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch96 faldo:location ?templateMotifSequenceMatchRegionP3959497 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP3959499 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP39594MF_0009792 . ?templateMotifSequenceMatchRegionP3959497 faldo:begin ?templateMotifSequenceMatchBeginP3959498 . ?templateMotifSequenceMatchBeginP3959498 faldo:position ?templateMotifSequenceMatchBeginPositionP3959493 ; faldo:reference isoform:P39594-1 . ?templateMotifSequenceProfileAlignmentOperationP3959499 edam:has_input signature:MF_00097 ; rdf:type edam:operation_0300 . ?targetMotifMatch100 faldo:location ?targetMotifMatchRegionMatch101 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00097103 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP39594MF_0009794 . ?targetMotifMatchRegionMatch101 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00097102 . ?targetMotifMatchRegionMatchBeginMF_00097102 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0009795 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_00097103 edam:has_input signature:MF_00097 ; rdf:type edam:operation_0300 . BIND(?this AS ?tagFT_5) . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP39594MF_0009792, 1, (STRLEN(?templateMotifCigarP39594MF_0009792) - STRLEN(REPLACE(?templateMotifCigarP39594MF_0009792, CONCAT('^(?:-*[^-]){', STR(((99 - ?templateMotifSequenceMatchBeginPositionP3959493) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1104) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP39594MF_0009794, 1, (STRLEN(?targetMotifMatchCigarP39594MF_0009794) - STRLEN(REPLACE(?targetMotifMatchCigarP39594MF_0009794, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1104), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP39594MF_0009794, 1, (STRLEN(?targetMotifMatchCigarP39594MF_0009794) - STRLEN(REPLACE(?targetMotifMatchCigarP39594MF_0009794, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1104), '}'), '')))), '[^-]', ''))) AS ?step2105) . BIND(((?step2105 + ?targetMotifMatchRegionMatchBeginPositionMF_0009795) - 1) AS ?thisPositionOn25) . BIND(?thisPositionOn25 AS ?thisPositionOn26) . BIND(?this AS ?pfs2t106) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn25))) AS ?pfsb22) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn26))) AS ?pfse23) . FILTER (REGEX('[DE]', SUBSTR(?thisSequenceValue, ?thisPositionOn25, 1))) . BIND(?this AS ?pfs20) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch111 faldo:location ?templateMotifSequenceMatchRegionP39594112 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP39594114 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP39594MF_00097107 . ?templateMotifSequenceMatchRegionP39594112 faldo:begin ?templateMotifSequenceMatchBeginP39594113 . ?templateMotifSequenceMatchBeginP39594113 faldo:position ?templateMotifSequenceMatchBeginPositionP39594108 ; faldo:reference isoform:P39594-1 . ?templateMotifSequenceProfileAlignmentOperationP39594114 edam:has_input signature:MF_00097 ; rdf:type edam:operation_0300 . ?targetMotifMatch115 faldo:location ?targetMotifMatchRegionMatch116 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00097118 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP39594MF_00097109 . ?targetMotifMatchRegionMatch116 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00097117 . ?targetMotifMatchRegionMatchBeginMF_00097117 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00097110 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_00097118 edam:has_input signature:MF_00097 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP39594MF_00097107, 1, (STRLEN(?templateMotifCigarP39594MF_00097107) - STRLEN(REPLACE(?templateMotifCigarP39594MF_00097107, CONCAT('^(?:-*[^-]){', STR(((44 - ?templateMotifSequenceMatchBeginPositionP39594108) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1119) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP39594MF_00097109, 1, (STRLEN(?targetMotifMatchCigarP39594MF_00097109) - STRLEN(REPLACE(?targetMotifMatchCigarP39594MF_00097109, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1119), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP39594MF_00097109, 1, (STRLEN(?targetMotifMatchCigarP39594MF_00097109) - STRLEN(REPLACE(?targetMotifMatchCigarP39594MF_00097109, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1119), '}'), '')))), '[^-]', ''))) AS ?step2120) . BIND(((?step2120 + ?targetMotifMatchRegionMatchBeginPositionMF_00097110) - 1) AS ?thisPositionOn32) . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP39594MF_00097107, 1, (STRLEN(?templateMotifCigarP39594MF_00097107) - STRLEN(REPLACE(?templateMotifCigarP39594MF_00097107, CONCAT('^(?:-*[^-]){', STR(((48 - ?templateMotifSequenceMatchBeginPositionP39594108) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1121) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP39594MF_00097109, 1, (STRLEN(?targetMotifMatchCigarP39594MF_00097109) - STRLEN(REPLACE(?targetMotifMatchCigarP39594MF_00097109, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1121), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP39594MF_00097109, 1, (STRLEN(?targetMotifMatchCigarP39594MF_00097109) - STRLEN(REPLACE(?targetMotifMatchCigarP39594MF_00097109, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1121), '}'), '')))), '[^-]', ''))) AS ?step2122) . BIND(((?step2122 + ?targetMotifMatchRegionMatchBeginPositionMF_00097110) - 1) AS ?thisPositionOn33) . BIND(?this AS ?pfs3t123) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn32))) AS ?pfsb29) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn33))) AS ?pfse30) . FILTER (REGEX('Q[ARNDCQEGHILKMFPSTWYVBZJUOX]R[ARNDCQEGHILKMFPSTWYVBZJUOX][KE]', SUBSTR(?thisSequenceValue, ?thisPositionOn32, (?thisPositionOn33 - ?thisPositionOn32)))) . BIND(URI(CONCAT(STR(?this), '#MF_00097a28')) AS ?annotation28) . BIND(?this AS ?pfs27) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch128 faldo:location ?templateMotifSequenceMatchRegionP39594129 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP39594131 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP39594MF_00097124 . ?templateMotifSequenceMatchRegionP39594129 faldo:begin ?templateMotifSequenceMatchBeginP39594130 . ?templateMotifSequenceMatchBeginP39594130 faldo:position ?templateMotifSequenceMatchBeginPositionP39594125 ; faldo:reference isoform:P39594-1 . ?templateMotifSequenceProfileAlignmentOperationP39594131 edam:has_input signature:MF_00097 ; rdf:type edam:operation_0300 . ?targetMotifMatch132 faldo:location ?targetMotifMatchRegionMatch133 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00097135 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP39594MF_00097126 . ?targetMotifMatchRegionMatch133 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00097134 . ?targetMotifMatchRegionMatchBeginMF_00097134 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00097127 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_00097135 edam:has_input signature:MF_00097 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP39594MF_00097124, 1, (STRLEN(?templateMotifCigarP39594MF_00097124) - STRLEN(REPLACE(?templateMotifCigarP39594MF_00097124, CONCAT('^(?:-*[^-]){', STR(((143 - ?templateMotifSequenceMatchBeginPositionP39594125) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1136) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP39594MF_00097126, 1, (STRLEN(?targetMotifMatchCigarP39594MF_00097126) - STRLEN(REPLACE(?targetMotifMatchCigarP39594MF_00097126, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1136), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP39594MF_00097126, 1, (STRLEN(?targetMotifMatchCigarP39594MF_00097126) - STRLEN(REPLACE(?targetMotifMatchCigarP39594MF_00097126, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1136), '}'), '')))), '[^-]', ''))) AS ?step2137) . BIND(((?step2137 + ?targetMotifMatchRegionMatchBeginPositionMF_00097127) - 1) AS ?thisPositionOn39) . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP39594MF_00097124, 1, (STRLEN(?templateMotifCigarP39594MF_00097124) - STRLEN(REPLACE(?templateMotifCigarP39594MF_00097124, CONCAT('^(?:-*[^-]){', STR(((145 - ?templateMotifSequenceMatchBeginPositionP39594125) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1138) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP39594MF_00097126, 1, (STRLEN(?targetMotifMatchCigarP39594MF_00097126) - STRLEN(REPLACE(?targetMotifMatchCigarP39594MF_00097126, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1138), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP39594MF_00097126, 1, (STRLEN(?targetMotifMatchCigarP39594MF_00097126) - STRLEN(REPLACE(?targetMotifMatchCigarP39594MF_00097126, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1138), '}'), '')))), '[^-]', ''))) AS ?step2139) . BIND(((?step2139 + ?targetMotifMatchRegionMatchBeginPositionMF_00097127) - 1) AS ?thisPositionOn40) . BIND(?this AS ?pfs3t140) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn39))) AS ?pfsb36) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn40))) AS ?pfse37) . FILTER (REGEX('[TS][ARNDCQEGHILKMFPSTWYVBZJUOX][TS]', SUBSTR(?thisSequenceValue, ?thisPositionOn39, (?thisPositionOn40 - ?thisPositionOn39)))) . BIND(URI(CONCAT(STR(?this), '#MF_00097a35')) AS ?annotation35) . BIND(?this AS ?pfs34) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch145 faldo:location ?templateMotifSequenceMatchRegionP39594146 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP39594148 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP39594MF_00097141 . ?templateMotifSequenceMatchRegionP39594146 faldo:begin ?templateMotifSequenceMatchBeginP39594147 . ?templateMotifSequenceMatchBeginP39594147 faldo:position ?templateMotifSequenceMatchBeginPositionP39594142 ; faldo:reference isoform:P39594-1 . ?templateMotifSequenceProfileAlignmentOperationP39594148 edam:has_input signature:MF_00097 ; rdf:type edam:operation_0300 . ?targetMotifMatch149 faldo:location ?targetMotifMatchRegionMatch150 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00097152 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP39594MF_00097143 . ?targetMotifMatchRegionMatch150 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00097151 . ?targetMotifMatchRegionMatchBeginMF_00097151 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00097144 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_00097152 edam:has_input signature:MF_00097 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP39594MF_00097141, 1, (STRLEN(?templateMotifCigarP39594MF_00097141) - STRLEN(REPLACE(?templateMotifCigarP39594MF_00097141, CONCAT('^(?:-*[^-]){', STR(((195 - ?templateMotifSequenceMatchBeginPositionP39594142) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1153) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP39594MF_00097143, 1, (STRLEN(?targetMotifMatchCigarP39594MF_00097143) - STRLEN(REPLACE(?targetMotifMatchCigarP39594MF_00097143, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1153), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP39594MF_00097143, 1, (STRLEN(?targetMotifMatchCigarP39594MF_00097143) - STRLEN(REPLACE(?targetMotifMatchCigarP39594MF_00097143, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1153), '}'), '')))), '[^-]', ''))) AS ?step2154) . BIND(((?step2154 + ?targetMotifMatchRegionMatchBeginPositionMF_00097144) - 1) AS ?thisPositionOn46) . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP39594MF_00097141, 1, (STRLEN(?templateMotifCigarP39594MF_00097141) - STRLEN(REPLACE(?templateMotifCigarP39594MF_00097141, CONCAT('^(?:-*[^-]){', STR(((196 - ?templateMotifSequenceMatchBeginPositionP39594142) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1155) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP39594MF_00097143, 1, (STRLEN(?targetMotifMatchCigarP39594MF_00097143) - STRLEN(REPLACE(?targetMotifMatchCigarP39594MF_00097143, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1155), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP39594MF_00097143, 1, (STRLEN(?targetMotifMatchCigarP39594MF_00097143) - STRLEN(REPLACE(?targetMotifMatchCigarP39594MF_00097143, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1155), '}'), '')))), '[^-]', ''))) AS ?step2156) . BIND(((?step2156 + ?targetMotifMatchRegionMatchBeginPositionMF_00097144) - 1) AS ?thisPositionOn47) . BIND(?this AS ?pfs3t157) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn46))) AS ?pfsb43) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn47))) AS ?pfse44) . FILTER (REGEX('[IVL][ST]', SUBSTR(?thisSequenceValue, ?thisPositionOn46, (?thisPositionOn47 - ?thisPositionOn46)))) . BIND(URI(CONCAT(STR(?this), '#MF_00097a42')) AS ?annotation42) . BIND(?this AS ?pfs41) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch162 faldo:location ?templateMotifSequenceMatchRegionP39594163 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP39594165 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP39594MF_00097158 . ?templateMotifSequenceMatchRegionP39594163 faldo:begin ?templateMotifSequenceMatchBeginP39594164 . ?templateMotifSequenceMatchBeginP39594164 faldo:position ?templateMotifSequenceMatchBeginPositionP39594159 ; faldo:reference isoform:P39594-1 . ?templateMotifSequenceProfileAlignmentOperationP39594165 edam:has_input signature:MF_00097 ; rdf:type edam:operation_0300 . ?targetMotifMatch166 faldo:location ?targetMotifMatchRegionMatch167 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00097169 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP39594MF_00097160 . ?targetMotifMatchRegionMatch167 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00097168 . ?targetMotifMatchRegionMatchBeginMF_00097168 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00097161 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_00097169 edam:has_input signature:MF_00097 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP39594MF_00097158, 1, (STRLEN(?templateMotifCigarP39594MF_00097158) - STRLEN(REPLACE(?templateMotifCigarP39594MF_00097158, CONCAT('^(?:-*[^-]){', STR(((79 - ?templateMotifSequenceMatchBeginPositionP39594159) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1170) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP39594MF_00097160, 1, (STRLEN(?targetMotifMatchCigarP39594MF_00097160) - STRLEN(REPLACE(?targetMotifMatchCigarP39594MF_00097160, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1170), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP39594MF_00097160, 1, (STRLEN(?targetMotifMatchCigarP39594MF_00097160) - STRLEN(REPLACE(?targetMotifMatchCigarP39594MF_00097160, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1170), '}'), '')))), '[^-]', ''))) AS ?step2171) . BIND(((?step2171 + ?targetMotifMatchRegionMatchBeginPositionMF_00097161) - 1) AS ?thisPositionOn53) . BIND(?thisPositionOn53 AS ?thisPositionOn54) . BIND(?this AS ?pfs3t172) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn53))) AS ?pfsb50) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn54))) AS ?pfse51) . FILTER (REGEX('[ND]', SUBSTR(?thisSequenceValue, ?thisPositionOn53, 1))) . BIND(URI(CONCAT(STR(?this), '#MF_00097a49')) AS ?annotation49) . BIND(?this AS ?pfs48) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch177 faldo:location ?templateMotifSequenceMatchRegionP39594178 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP39594180 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP39594MF_00097173 . ?templateMotifSequenceMatchRegionP39594178 faldo:begin ?templateMotifSequenceMatchBeginP39594179 . ?templateMotifSequenceMatchBeginP39594179 faldo:position ?templateMotifSequenceMatchBeginPositionP39594174 ; faldo:reference isoform:P39594-1 . ?templateMotifSequenceProfileAlignmentOperationP39594180 edam:has_input signature:MF_00097 ; rdf:type edam:operation_0300 . ?targetMotifMatch181 faldo:location ?targetMotifMatchRegionMatch182 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00097184 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP39594MF_00097175 . ?targetMotifMatchRegionMatch182 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00097183 . ?targetMotifMatchRegionMatchBeginMF_00097183 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00097176 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_00097184 edam:has_input signature:MF_00097 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP39594MF_00097173, 1, (STRLEN(?templateMotifCigarP39594MF_00097173) - STRLEN(REPLACE(?templateMotifCigarP39594MF_00097173, CONCAT('^(?:-*[^-]){', STR(((117 - ?templateMotifSequenceMatchBeginPositionP39594174) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1185) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP39594MF_00097175, 1, (STRLEN(?targetMotifMatchCigarP39594MF_00097175) - STRLEN(REPLACE(?targetMotifMatchCigarP39594MF_00097175, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1185), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP39594MF_00097175, 1, (STRLEN(?targetMotifMatchCigarP39594MF_00097175) - STRLEN(REPLACE(?targetMotifMatchCigarP39594MF_00097175, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1185), '}'), '')))), '[^-]', ''))) AS ?step2186) . BIND(((?step2186 + ?targetMotifMatchRegionMatchBeginPositionMF_00097176) - 1) AS ?thisPositionOn60) . BIND(?thisPositionOn60 AS ?thisPositionOn61) . BIND(?this AS ?pfs3t187) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn60))) AS ?pfsb57) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn61))) AS ?pfse58) . FILTER (REGEX('[ST]', SUBSTR(?thisSequenceValue, ?thisPositionOn60, 1))) . BIND(URI(CONCAT(STR(?this), '#MF_00097a56')) AS ?annotation56) . BIND(?this AS ?pfs55) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch192 faldo:location ?templateMotifSequenceMatchRegionP39594193 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP39594195 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP39594MF_00097188 . ?templateMotifSequenceMatchRegionP39594193 faldo:begin ?templateMotifSequenceMatchBeginP39594194 . ?templateMotifSequenceMatchBeginP39594194 faldo:position ?templateMotifSequenceMatchBeginPositionP39594189 ; faldo:reference isoform:P39594-1 . ?templateMotifSequenceProfileAlignmentOperationP39594195 edam:has_input signature:MF_00097 ; rdf:type edam:operation_0300 . ?targetMotifMatch196 faldo:location ?targetMotifMatchRegionMatch197 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00097199 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP39594MF_00097190 . ?targetMotifMatchRegionMatch197 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00097198 . ?targetMotifMatchRegionMatchBeginMF_00097198 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00097191 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_00097199 edam:has_input signature:MF_00097 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP39594MF_00097188, 1, (STRLEN(?templateMotifCigarP39594MF_00097188) - STRLEN(REPLACE(?templateMotifCigarP39594MF_00097188, CONCAT('^(?:-*[^-]){', STR(((146 - ?templateMotifSequenceMatchBeginPositionP39594189) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1200) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP39594MF_00097190, 1, (STRLEN(?targetMotifMatchCigarP39594MF_00097190) - STRLEN(REPLACE(?targetMotifMatchCigarP39594MF_00097190, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1200), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP39594MF_00097190, 1, (STRLEN(?targetMotifMatchCigarP39594MF_00097190) - STRLEN(REPLACE(?targetMotifMatchCigarP39594MF_00097190, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1200), '}'), '')))), '[^-]', ''))) AS ?step2201) . BIND(((?step2201 + ?targetMotifMatchRegionMatchBeginPositionMF_00097191) - 1) AS ?thisPositionOn67) . BIND(?thisPositionOn67 AS ?thisPositionOn68) . BIND(?this AS ?pfs3t202) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn67))) AS ?pfsb64) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn68))) AS ?pfse65) . FILTER (REGEX('[KH]', SUBSTR(?thisSequenceValue, ?thisPositionOn67, 1))) . BIND(URI(CONCAT(STR(?this), '#MF_00097a63')) AS ?annotation63) . BIND(?this AS ?pfs62) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch207 faldo:location ?templateMotifSequenceMatchRegionP39594208 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP39594210 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP39594MF_00097203 . ?templateMotifSequenceMatchRegionP39594208 faldo:begin ?templateMotifSequenceMatchBeginP39594209 . ?templateMotifSequenceMatchBeginP39594209 faldo:position ?templateMotifSequenceMatchBeginPositionP39594204 ; faldo:reference isoform:P39594-1 . ?templateMotifSequenceProfileAlignmentOperationP39594210 edam:has_input signature:MF_00097 ; rdf:type edam:operation_0300 . ?targetMotifMatch211 faldo:location ?targetMotifMatchRegionMatch212 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00097214 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP39594MF_00097205 . ?targetMotifMatchRegionMatch212 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00097213 . ?targetMotifMatchRegionMatchBeginMF_00097213 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00097206 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_00097214 edam:has_input signature:MF_00097 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP39594MF_00097203, 1, (STRLEN(?templateMotifCigarP39594MF_00097203) - STRLEN(REPLACE(?templateMotifCigarP39594MF_00097203, CONCAT('^(?:-*[^-]){', STR(((175 - ?templateMotifSequenceMatchBeginPositionP39594204) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1215) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP39594MF_00097205, 1, (STRLEN(?targetMotifMatchCigarP39594MF_00097205) - STRLEN(REPLACE(?targetMotifMatchCigarP39594MF_00097205, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1215), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP39594MF_00097205, 1, (STRLEN(?targetMotifMatchCigarP39594MF_00097205) - STRLEN(REPLACE(?targetMotifMatchCigarP39594MF_00097205, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1215), '}'), '')))), '[^-]', ''))) AS ?step2216) . BIND(((?step2216 + ?targetMotifMatchRegionMatchBeginPositionMF_00097206) - 1) AS ?thisPositionOn74) . BIND(?thisPositionOn74 AS ?thisPositionOn75) . BIND(?this AS ?pfs3t217) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn74))) AS ?pfsb71) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn75))) AS ?pfse72) . FILTER (REGEX('[GA]', SUBSTR(?thisSequenceValue, ?thisPositionOn74, 1))) . BIND(URI(CONCAT(STR(?this), '#MF_00097a70')) AS ?annotation70) . BIND(?this AS ?pfs69) . } OPTIONAL { ?this a up:Protein . BIND(?this AS ?caseWithTag218) . } BIND(IF((BOUND(?tagFT_4) || BOUND(?tagFT_5)), ?caseWithTag218, ?UNBOUND_VARIABLE) AS ?case12) . }