CONSTRUCT { _:49418 up:source unirule:MF_00126 . _:49419 up:source unirule:MF_00126 . _:49420 up:source unirule:MF_00126 . _:49421 up:source unirule:MF_00126 . _:49422 up:source unirule:MF_00126 . _:49423 up:source unirule:MF_00126 . _:49424 up:source unirule:MF_00126 . _:49425 up:source unirule:MF_00126 . _:49426 up:source unirule:MF_00126 . _:49427 up:source unirule:MF_00126 . _:49428 up:source unirule:MF_00126 . _:49429 up:source unirule:MF_00126 . _:49430 up:source unirule:MF_00126 . _:49431 up:source unirule:MF_00126 . _:49432 up:source unirule:MF_00126 . _:49433 up:source unirule:MF_00126 . _:49434 up:source unirule:MF_00126 . _:49435 up:source unirule:MF_00126 . _:49436 up:source unirule:MF_00126 . _:49437 up:source unirule:MF_00126 . _:49438 up:source unirule:MF_00126 . _:49439 up:source unirule:MF_00126 . _:49440 up:source unirule:MF_00126 . _:49441 up:source unirule:MF_00126 . _:49442 up:source unirule:MF_00126 . _:49443 up:source unirule:MF_00126 . _:49444 up:source unirule:MF_00126 . ?this up:alternativeName ?name1 ; up:annotation ?annotation3 , ?annotation5 , ?annotation6 , ?annotation8 ; up:classifiedWith GO:0004819 , GO:0005524 , GO:0005737 , GO:0006424 , keyword:30 , keyword:436 , keyword:547 , keyword:648 , keyword:67 , keyword:963 ; up:recommendedName ?name0 . ?name0 up:ecName '6.1.1.18' ; up:fullName 'Glutamine--tRNA ligase' ; rdf:type up:Structured_Name . ?name1 up:fullName 'Glutaminyl-tRNA synthetase' ; up:shortName 'GlnRS' ; rdf:type up:Structured_Name . ?gene2 skos:prefLabel 'glnS' . ?annotation3 up:activity ?activity4 ; rdf:type up:Catalytic_Activity_Annotation . ?activity4 up:catalyticActivity <http://rdf.rhea-db.org/20121>; up:enzymeClass <http://purl.uniprot.org/enzyme/6.1.1.18>. ?annotation5 a up:Subunit_Annotation ; rdfs:comment 'Monomer.' . ?annotation6 a up:Subcellular_Location_Annotation . ?annotation6li7 up:cellularComponent <http://purl.uniprot.org/locations/null>. ?annotation8 a up:Similarity_Annotation ; rdfs:comment 'Belongs to the class-I aminoacyl-tRNA synthetase family.' . ?pfs9 up:annotation ?annotation10 . ?annotation10 faldo:begin ?pfsb11 ; faldo:end ?pfse12 ; up:ligand ?ligand13 ; rdf:type up:Binding_Site_Annotation . ?pfsb11 faldo:position ?thisPositionOn14 ; rdf:type faldo:ExactPosition . ?pfse12 faldo:position ?thisPositionOn15 ; rdf:type faldo:ExactPosition . ?ligand13 rdfs:subClassOf chebi:30616 . ?pfs16 up:annotation ?annotation17 . ?annotation17 faldo:begin ?pfsb18 ; faldo:end ?pfse19 ; up:ligand ?ligand20 ; rdf:type up:Binding_Site_Annotation . ?pfsb18 faldo:position ?thisPositionOn21 ; rdf:type faldo:ExactPosition . ?pfse19 faldo:position ?thisPositionOn22 ; rdf:type faldo:ExactPosition . ?ligand20 rdfs:subClassOf chebi:30616 . ?pfs23 up:annotation ?annotation24 . ?annotation24 faldo:begin ?pfsb25 ; faldo:end ?pfse26 ; up:ligand ?ligand27 ; rdf:type up:Binding_Site_Annotation . ?pfsb25 faldo:position ?thisPositionOn28 ; rdf:type faldo:ExactPosition . ?pfse26 faldo:position ?thisPositionOn29 ; rdf:type faldo:ExactPosition . ?ligand27 rdfs:subClassOf chebi:30616 . ?pfs30 up:annotation ?annotation31 . ?annotation31 faldo:begin ?pfsb32 ; faldo:end ?pfse33 ; up:ligand ?ligand34 ; rdf:type up:Binding_Site_Annotation . ?pfsb32 faldo:position ?thisPositionOn35 ; rdf:type faldo:ExactPosition . ?pfse33 faldo:position ?thisPositionOn36 ; rdf:type faldo:ExactPosition . ?ligand34 rdfs:subClassOf chebi:30616 . ?pfs37 up:annotation ?annotation38 . ?annotation38 faldo:begin ?pfsb39 ; faldo:end ?pfse40 ; rdf:type up:Region_Annotation ; rdfs:comment 'Interaction with tRNA' . ?pfsb39 faldo:position ?thisPositionOn41 ; rdf:type faldo:ExactPosition . ?pfse40 faldo:position ?thisPositionOn42 ; rdf:type faldo:ExactPosition . ?pfs43 up:annotation ?annotation44 . ?annotation44 faldo:begin ?pfsb45 ; faldo:end ?pfse46 ; rdf:type up:Motif_Annotation ; rdfs:comment "'HIGH' region" . ?pfsb45 faldo:position ?thisPositionOn47 ; rdf:type faldo:ExactPosition . ?pfse46 faldo:position ?thisPositionOn48 ; rdf:type faldo:ExactPosition . ?pfs49 up:annotation ?annotation50 . ?annotation50 faldo:begin ?pfsb51 ; faldo:end ?pfse52 ; rdf:type up:Motif_Annotation ; rdfs:comment "'KMSKS' region" . ?pfsb51 faldo:position ?thisPositionOn53 ; rdf:type faldo:ExactPosition . ?pfse52 faldo:position ?thisPositionOn54 ; rdf:type faldo:ExactPosition . ?pfs55 up:annotation ?annotation56 . ?annotation56 faldo:begin ?pfsb57 ; faldo:end ?pfse58 ; up:ligand ?ligand59 ; rdf:type up:Binding_Site_Annotation . ?pfsb57 faldo:position ?thisPositionOn60 ; rdf:type faldo:ExactPosition . ?pfse58 faldo:position ?thisPositionOn61 ; rdf:type faldo:ExactPosition . ?ligand59 rdfs:subClassOf chebi:58359 . ?pfs62 up:annotation ?annotation63 . ?annotation63 faldo:begin ?pfsb64 ; faldo:end ?pfse65 ; up:ligand ?ligand66 ; rdf:type up:Binding_Site_Annotation . ?pfsb64 faldo:position ?thisPositionOn67 ; rdf:type faldo:ExactPosition . ?pfse65 faldo:position ?thisPositionOn68 ; rdf:type faldo:ExactPosition . ?ligand66 rdfs:subClassOf chebi:58359 . ?pfs69 up:annotation ?annotation70 . ?annotation70 faldo:begin ?pfsb71 ; faldo:end ?pfse72 ; up:ligand ?ligand73 ; rdf:type up:Binding_Site_Annotation . ?pfsb71 faldo:position ?thisPositionOn74 ; rdf:type faldo:ExactPosition . ?pfse72 faldo:position ?thisPositionOn75 ; rdf:type faldo:ExactPosition . ?ligand73 rdfs:subClassOf chebi:30616 . _:49445 a rdf:Statement ; up:attribution _:49418 ; rdf:subject ?this ; rdf:predicate up:recommendedName ; rdf:object ?name0 . _:49446 a rdf:Statement ; up:attribution _:49419 ; rdf:subject ?this ; rdf:predicate up:alternativeName ; rdf:object ?name1 . _:49447 a rdf:Statement ; up:attribution _:49420 ; rdf:subject ?gene2 ; rdf:predicate up:encodedBy ; rdf:object ?gene2 . _:49448 a rdf:Statement ; up:attribution _:49421 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation3 . _:49449 a rdf:Statement ; up:attribution _:49422 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation5 . _:49450 a rdf:Statement ; up:attribution _:49423 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation6 . _:49451 a rdf:Statement ; up:attribution _:49424 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation8 . _:49452 a rdf:Statement ; up:attribution _:49425 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:30 . _:49453 a rdf:Statement ; up:attribution _:49426 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:67 . _:49454 a rdf:Statement ; up:attribution _:49427 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:963 . _:49455 a rdf:Statement ; up:attribution _:49428 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:436 . _:49456 a rdf:Statement ; up:attribution _:49429 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:547 . _:49457 a rdf:Statement ; up:attribution _:49430 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:648 . _:49458 a rdf:Statement ; up:attribution _:49431 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object GO:0005524 . _:49459 a rdf:Statement ; up:attribution _:49432 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object GO:0004819 . _:49460 a rdf:Statement ; up:attribution _:49433 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object GO:0006424 . _:49461 a rdf:Statement ; up:attribution _:49434 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object GO:0005737 . _:49462 a rdf:Statement ; up:source unirule:MF_00126 ; rdf:subject ?pfs9 ; rdf:predicate up:annotation ; rdf:object ?annotation10 . _:49463 a rdf:Statement ; up:attribution _:49435 ; rdf:subject ?pfs9 ; rdf:predicate up:annotation ; rdf:object ?annotation10 . _:49464 a rdf:Statement ; up:source unirule:MF_00126 ; rdf:subject ?pfs16 ; rdf:predicate up:annotation ; rdf:object ?annotation17 . _:49465 a rdf:Statement ; up:attribution _:49436 ; rdf:subject ?pfs16 ; rdf:predicate up:annotation ; rdf:object ?annotation17 . _:49466 a rdf:Statement ; up:source unirule:MF_00126 ; rdf:subject ?pfs23 ; rdf:predicate up:annotation ; rdf:object ?annotation24 . _:49467 a rdf:Statement ; up:attribution _:49437 ; rdf:subject ?pfs23 ; rdf:predicate up:annotation ; rdf:object ?annotation24 . _:49468 a rdf:Statement ; up:source unirule:MF_00126 ; rdf:subject ?pfs30 ; rdf:predicate up:annotation ; rdf:object ?annotation31 . _:49469 a rdf:Statement ; up:attribution _:49438 ; rdf:subject ?pfs30 ; rdf:predicate up:annotation ; rdf:object ?annotation31 . _:49470 a rdf:Statement ; up:source unirule:MF_00126 ; rdf:subject ?pfs37 ; rdf:predicate up:annotation ; rdf:object ?annotation38 . _:49471 a rdf:Statement ; up:attribution _:49439 ; rdf:subject ?pfs37 ; rdf:predicate up:annotation ; rdf:object ?annotation38 . _:49472 a rdf:Statement ; up:source unirule:MF_00126 ; rdf:subject ?pfs43 ; rdf:predicate up:annotation ; rdf:object ?annotation44 . _:49473 a rdf:Statement ; up:attribution _:49440 ; rdf:subject ?pfs43 ; rdf:predicate up:annotation ; rdf:object ?annotation44 . _:49474 a rdf:Statement ; up:source unirule:MF_00126 ; rdf:subject ?pfs49 ; rdf:predicate up:annotation ; rdf:object ?annotation50 . _:49475 a rdf:Statement ; up:attribution _:49441 ; rdf:subject ?pfs49 ; rdf:predicate up:annotation ; rdf:object ?annotation50 . _:49476 a rdf:Statement ; up:source unirule:MF_00126 ; rdf:subject ?pfs55 ; rdf:predicate up:annotation ; rdf:object ?annotation56 . _:49477 a rdf:Statement ; up:attribution _:49442 ; rdf:subject ?pfs55 ; rdf:predicate up:annotation ; rdf:object ?annotation56 . _:49478 a rdf:Statement ; up:source unirule:MF_00126 ; rdf:subject ?pfs62 ; rdf:predicate up:annotation ; rdf:object ?annotation63 . _:49479 a rdf:Statement ; up:attribution _:49443 ; rdf:subject ?pfs62 ; rdf:predicate up:annotation ; rdf:object ?annotation63 . _:49480 a rdf:Statement ; up:source unirule:MF_00126 ; rdf:subject ?pfs69 ; rdf:predicate up:annotation ; rdf:object ?annotation70 . _:49481 a rdf:Statement ; up:attribution _:49444 ; rdf:subject ?pfs69 ; rdf:predicate up:annotation ; rdf:object ?annotation70 . } WHERE { #baseURI: http://purl.uniprot.org/unirule/MF_00126 #Rule MF_00126 Created by:hamap on:2001-06-01 Modified by:ecastro on:2023-06-01 ?this up:organism ?thisOrganism ; rdfs:seeAlso signature:MF_00126 . ?thisOrganism rdfs:subClassOf+ taxon:2 . BIND(URI(CONCAT(STR(?this), '#MF_00126a0')) AS ?name0) . BIND(URI(CONCAT(STR(?this), '#MF_00126a1')) AS ?name1) . BIND(URI(CONCAT(STR(?this), '#MF_00126a3')) AS ?annotation3) . BIND(URI(CONCAT(STR(?this), '#MF_00126a5')) AS ?annotation5) . BIND(URI(CONCAT(STR(?this), '#MF_00126a6')) AS ?annotation6) . BIND(URI(CONCAT(STR(?this), '#MF_00126a8')) AS ?annotation8) . OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch80 faldo:location ?templateMotifSequenceMatchRegionP0096281 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0096283 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP00962MF_0012676 . ?templateMotifSequenceMatchRegionP0096281 faldo:begin ?templateMotifSequenceMatchBeginP0096282 . ?templateMotifSequenceMatchBeginP0096282 faldo:position ?templateMotifSequenceMatchBeginPositionP0096277 ; faldo:reference isoform:P00962-1 . ?templateMotifSequenceProfileAlignmentOperationP0096283 edam:has_input signature:MF_00126 ; rdf:type edam:operation_0300 . ?targetMotifMatch84 faldo:location ?targetMotifMatchRegionMatch85 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0012687 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP00962MF_0012678 . ?targetMotifMatchRegionMatch85 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0012686 . ?targetMotifMatchRegionMatchBeginMF_0012686 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0012679 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_0012687 edam:has_input signature:MF_00126 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP00962MF_0012676, 1, (STRLEN(?templateMotifCigarP00962MF_0012676) - STRLEN(REPLACE(?templateMotifCigarP00962MF_0012676, CONCAT('^(?:-*[^-]){', STR(((35 - ?templateMotifSequenceMatchBeginPositionP0096277) + 1)), '}'), '')))), '[a-z]', '')) AS ?step188) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP00962MF_0012678, 1, (STRLEN(?targetMotifMatchCigarP00962MF_0012678) - STRLEN(REPLACE(?targetMotifMatchCigarP00962MF_0012678, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step188), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP00962MF_0012678, 1, (STRLEN(?targetMotifMatchCigarP00962MF_0012678) - STRLEN(REPLACE(?targetMotifMatchCigarP00962MF_0012678, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step188), '}'), '')))), '[^-]', ''))) AS ?step289) . BIND(((?step289 + ?targetMotifMatchRegionMatchBeginPositionMF_0012679) - 1) AS ?thisPositionOn14) . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP00962MF_0012676, 1, (STRLEN(?templateMotifCigarP00962MF_0012676) - STRLEN(REPLACE(?templateMotifCigarP00962MF_0012676, CONCAT('^(?:-*[^-]){', STR(((37 - ?templateMotifSequenceMatchBeginPositionP0096277) + 1)), '}'), '')))), '[a-z]', '')) AS ?step190) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP00962MF_0012678, 1, (STRLEN(?targetMotifMatchCigarP00962MF_0012678) - STRLEN(REPLACE(?targetMotifMatchCigarP00962MF_0012678, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step190), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP00962MF_0012678, 1, (STRLEN(?targetMotifMatchCigarP00962MF_0012678) - STRLEN(REPLACE(?targetMotifMatchCigarP00962MF_0012678, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step190), '}'), '')))), '[^-]', ''))) AS ?step291) . BIND(((?step291 + ?targetMotifMatchRegionMatchBeginPositionMF_0012679) - 1) AS ?thisPositionOn15) . BIND(?this AS ?pfs1t92) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn14))) AS ?pfsb11) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn15))) AS ?pfse12) . FILTER (REGEX('[ED]PN', SUBSTR(?thisSequenceValue, ?thisPositionOn14, (?thisPositionOn15 - ?thisPositionOn14)))) . BIND(URI(CONCAT(STR(?this), '#MF_00126a10')) AS ?annotation10) . BIND(?this AS ?pfs9) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch97 faldo:location ?templateMotifSequenceMatchRegionP0096298 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP00962100 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP00962MF_0012693 . ?templateMotifSequenceMatchRegionP0096298 faldo:begin ?templateMotifSequenceMatchBeginP0096299 . ?templateMotifSequenceMatchBeginP0096299 faldo:position ?templateMotifSequenceMatchBeginPositionP0096294 ; faldo:reference isoform:P00962-1 . ?templateMotifSequenceProfileAlignmentOperationP00962100 edam:has_input signature:MF_00126 ; rdf:type edam:operation_0300 . ?targetMotifMatch101 faldo:location ?targetMotifMatchRegionMatch102 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00126104 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP00962MF_0012695 . ?targetMotifMatchRegionMatch102 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00126103 . ?targetMotifMatchRegionMatchBeginMF_00126103 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0012696 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_00126104 edam:has_input signature:MF_00126 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP00962MF_0012693, 1, (STRLEN(?templateMotifCigarP00962MF_0012693) - STRLEN(REPLACE(?templateMotifCigarP00962MF_0012693, CONCAT('^(?:-*[^-]){', STR(((41 - ?templateMotifSequenceMatchBeginPositionP0096294) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1105) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP00962MF_0012695, 1, (STRLEN(?targetMotifMatchCigarP00962MF_0012695) - STRLEN(REPLACE(?targetMotifMatchCigarP00962MF_0012695, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1105), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP00962MF_0012695, 1, (STRLEN(?targetMotifMatchCigarP00962MF_0012695) - STRLEN(REPLACE(?targetMotifMatchCigarP00962MF_0012695, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1105), '}'), '')))), '[^-]', ''))) AS ?step2106) . BIND(((?step2106 + ?targetMotifMatchRegionMatchBeginPositionMF_0012696) - 1) AS ?thisPositionOn21) . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP00962MF_0012693, 1, (STRLEN(?templateMotifCigarP00962MF_0012693) - STRLEN(REPLACE(?templateMotifCigarP00962MF_0012693, CONCAT('^(?:-*[^-]){', STR(((47 - ?templateMotifSequenceMatchBeginPositionP0096294) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1107) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP00962MF_0012695, 1, (STRLEN(?targetMotifMatchCigarP00962MF_0012695) - STRLEN(REPLACE(?targetMotifMatchCigarP00962MF_0012695, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1107), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP00962MF_0012695, 1, (STRLEN(?targetMotifMatchCigarP00962MF_0012695) - STRLEN(REPLACE(?targetMotifMatchCigarP00962MF_0012695, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1107), '}'), '')))), '[^-]', ''))) AS ?step2108) . BIND(((?step2108 + ?targetMotifMatchRegionMatchBeginPositionMF_0012696) - 1) AS ?thisPositionOn22) . BIND(?this AS ?pfs1t109) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn21))) AS ?pfsb18) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn22))) AS ?pfse19) . FILTER (REGEX('H[IL]GH[AS]K[SA]', SUBSTR(?thisSequenceValue, ?thisPositionOn21, (?thisPositionOn22 - ?thisPositionOn21)))) . BIND(URI(CONCAT(STR(?this), '#MF_00126a17')) AS ?annotation17) . BIND(?this AS ?pfs16) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch114 faldo:location ?templateMotifSequenceMatchRegionP00962115 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP00962117 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP00962MF_00126110 . ?templateMotifSequenceMatchRegionP00962115 faldo:begin ?templateMotifSequenceMatchBeginP00962116 . ?templateMotifSequenceMatchBeginP00962116 faldo:position ?templateMotifSequenceMatchBeginPositionP00962111 ; faldo:reference isoform:P00962-1 . ?templateMotifSequenceProfileAlignmentOperationP00962117 edam:has_input signature:MF_00126 ; rdf:type edam:operation_0300 . ?targetMotifMatch118 faldo:location ?targetMotifMatchRegionMatch119 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00126121 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP00962MF_00126112 . ?targetMotifMatchRegionMatch119 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00126120 . ?targetMotifMatchRegionMatchBeginMF_00126120 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00126113 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_00126121 edam:has_input signature:MF_00126 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP00962MF_00126110, 1, (STRLEN(?templateMotifCigarP00962MF_00126110) - STRLEN(REPLACE(?templateMotifCigarP00962MF_00126110, CONCAT('^(?:-*[^-]){', STR(((261 - ?templateMotifSequenceMatchBeginPositionP00962111) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1122) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP00962MF_00126112, 1, (STRLEN(?targetMotifMatchCigarP00962MF_00126112) - STRLEN(REPLACE(?targetMotifMatchCigarP00962MF_00126112, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1122), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP00962MF_00126112, 1, (STRLEN(?targetMotifMatchCigarP00962MF_00126112) - STRLEN(REPLACE(?targetMotifMatchCigarP00962MF_00126112, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1122), '}'), '')))), '[^-]', ''))) AS ?step2123) . BIND(((?step2123 + ?targetMotifMatchRegionMatchBeginPositionMF_00126113) - 1) AS ?thisPositionOn28) . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP00962MF_00126110, 1, (STRLEN(?templateMotifCigarP00962MF_00126110) - STRLEN(REPLACE(?templateMotifCigarP00962MF_00126110, CONCAT('^(?:-*[^-]){', STR(((262 - ?templateMotifSequenceMatchBeginPositionP00962111) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1124) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP00962MF_00126112, 1, (STRLEN(?targetMotifMatchCigarP00962MF_00126112) - STRLEN(REPLACE(?targetMotifMatchCigarP00962MF_00126112, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1124), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP00962MF_00126112, 1, (STRLEN(?targetMotifMatchCigarP00962MF_00126112) - STRLEN(REPLACE(?targetMotifMatchCigarP00962MF_00126112, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1124), '}'), '')))), '[^-]', ''))) AS ?step2125) . BIND(((?step2125 + ?targetMotifMatchRegionMatchBeginPositionMF_00126113) - 1) AS ?thisPositionOn29) . BIND(?this AS ?pfs1t126) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn28))) AS ?pfsb25) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn29))) AS ?pfse26) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn28, (?thisPositionOn29 - ?thisPositionOn28)) = 'RL')) . BIND(URI(CONCAT(STR(?this), '#MF_00126a24')) AS ?annotation24) . BIND(?this AS ?pfs23) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch131 faldo:location ?templateMotifSequenceMatchRegionP00962132 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP00962134 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP00962MF_00126127 . ?templateMotifSequenceMatchRegionP00962132 faldo:begin ?templateMotifSequenceMatchBeginP00962133 . ?templateMotifSequenceMatchBeginP00962133 faldo:position ?templateMotifSequenceMatchBeginPositionP00962128 ; faldo:reference isoform:P00962-1 . ?templateMotifSequenceProfileAlignmentOperationP00962134 edam:has_input signature:MF_00126 ; rdf:type edam:operation_0300 . ?targetMotifMatch135 faldo:location ?targetMotifMatchRegionMatch136 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00126138 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP00962MF_00126129 . ?targetMotifMatchRegionMatch136 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00126137 . ?targetMotifMatchRegionMatchBeginMF_00126137 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00126130 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_00126138 edam:has_input signature:MF_00126 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP00962MF_00126127, 1, (STRLEN(?templateMotifCigarP00962MF_00126127) - STRLEN(REPLACE(?templateMotifCigarP00962MF_00126127, CONCAT('^(?:-*[^-]){', STR(((269 - ?templateMotifSequenceMatchBeginPositionP00962128) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1139) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP00962MF_00126129, 1, (STRLEN(?targetMotifMatchCigarP00962MF_00126129) - STRLEN(REPLACE(?targetMotifMatchCigarP00962MF_00126129, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1139), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP00962MF_00126129, 1, (STRLEN(?targetMotifMatchCigarP00962MF_00126129) - STRLEN(REPLACE(?targetMotifMatchCigarP00962MF_00126129, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1139), '}'), '')))), '[^-]', ''))) AS ?step2140) . BIND(((?step2140 + ?targetMotifMatchRegionMatchBeginPositionMF_00126130) - 1) AS ?thisPositionOn35) . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP00962MF_00126127, 1, (STRLEN(?templateMotifCigarP00962MF_00126127) - STRLEN(REPLACE(?templateMotifCigarP00962MF_00126127, CONCAT('^(?:-*[^-]){', STR(((271 - ?templateMotifSequenceMatchBeginPositionP00962128) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1141) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP00962MF_00126129, 1, (STRLEN(?targetMotifMatchCigarP00962MF_00126129) - STRLEN(REPLACE(?targetMotifMatchCigarP00962MF_00126129, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1141), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP00962MF_00126129, 1, (STRLEN(?targetMotifMatchCigarP00962MF_00126129) - STRLEN(REPLACE(?targetMotifMatchCigarP00962MF_00126129, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1141), '}'), '')))), '[^-]', ''))) AS ?step2142) . BIND(((?step2142 + ?targetMotifMatchRegionMatchBeginPositionMF_00126130) - 1) AS ?thisPositionOn36) . BIND(?this AS ?pfs1t143) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn35))) AS ?pfsb32) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn36))) AS ?pfse33) . FILTER (REGEX('[MVL]SK', SUBSTR(?thisSequenceValue, ?thisPositionOn35, (?thisPositionOn36 - ?thisPositionOn35)))) . BIND(URI(CONCAT(STR(?this), '#MF_00126a31')) AS ?annotation31) . BIND(?this AS ?pfs30) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch148 faldo:location ?templateMotifSequenceMatchRegionP00962149 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP00962151 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP00962MF_00126144 . ?templateMotifSequenceMatchRegionP00962149 faldo:begin ?templateMotifSequenceMatchBeginP00962150 . ?templateMotifSequenceMatchBeginP00962150 faldo:position ?templateMotifSequenceMatchBeginPositionP00962145 ; faldo:reference isoform:P00962-1 . ?templateMotifSequenceProfileAlignmentOperationP00962151 edam:has_input signature:MF_00126 ; rdf:type edam:operation_0300 . ?targetMotifMatch152 faldo:location ?targetMotifMatchRegionMatch153 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00126155 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP00962MF_00126146 . ?targetMotifMatchRegionMatch153 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00126154 . ?targetMotifMatchRegionMatchBeginMF_00126154 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00126147 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_00126155 edam:has_input signature:MF_00126 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP00962MF_00126144, 1, (STRLEN(?templateMotifCigarP00962MF_00126144) - STRLEN(REPLACE(?templateMotifCigarP00962MF_00126144, CONCAT('^(?:-*[^-]){', STR(((317 - ?templateMotifSequenceMatchBeginPositionP00962145) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1156) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP00962MF_00126146, 1, (STRLEN(?targetMotifMatchCigarP00962MF_00126146) - STRLEN(REPLACE(?targetMotifMatchCigarP00962MF_00126146, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1156), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP00962MF_00126146, 1, (STRLEN(?targetMotifMatchCigarP00962MF_00126146) - STRLEN(REPLACE(?targetMotifMatchCigarP00962MF_00126146, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1156), '}'), '')))), '[^-]', ''))) AS ?step2157) . BIND(((?step2157 + ?targetMotifMatchRegionMatchBeginPositionMF_00126147) - 1) AS ?thisPositionOn41) . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP00962MF_00126144, 1, (STRLEN(?templateMotifCigarP00962MF_00126144) - STRLEN(REPLACE(?templateMotifCigarP00962MF_00126144, CONCAT('^(?:-*[^-]){', STR(((324 - ?templateMotifSequenceMatchBeginPositionP00962145) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1158) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP00962MF_00126146, 1, (STRLEN(?targetMotifMatchCigarP00962MF_00126146) - STRLEN(REPLACE(?targetMotifMatchCigarP00962MF_00126146, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1158), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP00962MF_00126146, 1, (STRLEN(?targetMotifMatchCigarP00962MF_00126146) - STRLEN(REPLACE(?targetMotifMatchCigarP00962MF_00126146, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1158), '}'), '')))), '[^-]', ''))) AS ?step2159) . BIND(((?step2159 + ?targetMotifMatchRegionMatchBeginPositionMF_00126147) - 1) AS ?thisPositionOn42) . BIND(?this AS ?pfs1t160) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn41))) AS ?pfsb39) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn42))) AS ?pfse40) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn41, (?thisPositionOn42 - ?thisPositionOn41)) = 'TKQDNTIE')) . BIND(URI(CONCAT(STR(?this), '#MF_00126a38')) AS ?annotation38) . BIND(?this AS ?pfs37) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch165 faldo:location ?templateMotifSequenceMatchRegionP00962166 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP00962168 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP00962MF_00126161 . ?templateMotifSequenceMatchRegionP00962166 faldo:begin ?templateMotifSequenceMatchBeginP00962167 . ?templateMotifSequenceMatchBeginP00962167 faldo:position ?templateMotifSequenceMatchBeginPositionP00962162 ; faldo:reference isoform:P00962-1 . ?templateMotifSequenceProfileAlignmentOperationP00962168 edam:has_input signature:MF_00126 ; rdf:type edam:operation_0300 . ?targetMotifMatch169 faldo:location ?targetMotifMatchRegionMatch170 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00126172 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP00962MF_00126163 . ?targetMotifMatchRegionMatch170 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00126171 . ?targetMotifMatchRegionMatchBeginMF_00126171 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00126164 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_00126172 edam:has_input signature:MF_00126 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP00962MF_00126161, 1, (STRLEN(?templateMotifCigarP00962MF_00126161) - STRLEN(REPLACE(?templateMotifCigarP00962MF_00126161, CONCAT('^(?:-*[^-]){', STR(((34 - ?templateMotifSequenceMatchBeginPositionP00962162) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1173) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP00962MF_00126163, 1, (STRLEN(?targetMotifMatchCigarP00962MF_00126163) - STRLEN(REPLACE(?targetMotifMatchCigarP00962MF_00126163, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1173), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP00962MF_00126163, 1, (STRLEN(?targetMotifMatchCigarP00962MF_00126163) - STRLEN(REPLACE(?targetMotifMatchCigarP00962MF_00126163, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1173), '}'), '')))), '[^-]', ''))) AS ?step2174) . BIND(((?step2174 + ?targetMotifMatchRegionMatchBeginPositionMF_00126164) - 1) AS ?thisPositionOn47) . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP00962MF_00126161, 1, (STRLEN(?templateMotifCigarP00962MF_00126161) - STRLEN(REPLACE(?templateMotifCigarP00962MF_00126161, CONCAT('^(?:-*[^-]){', STR(((44 - ?templateMotifSequenceMatchBeginPositionP00962162) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1175) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP00962MF_00126163, 1, (STRLEN(?targetMotifMatchCigarP00962MF_00126163) - STRLEN(REPLACE(?targetMotifMatchCigarP00962MF_00126163, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1175), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP00962MF_00126163, 1, (STRLEN(?targetMotifMatchCigarP00962MF_00126163) - STRLEN(REPLACE(?targetMotifMatchCigarP00962MF_00126163, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1175), '}'), '')))), '[^-]', ''))) AS ?step2176) . BIND(((?step2176 + ?targetMotifMatchRegionMatchBeginPositionMF_00126164) - 1) AS ?thisPositionOn48) . BIND(?this AS ?pfs1t177) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn47))) AS ?pfsb45) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn48))) AS ?pfse46) . FILTER (REGEX('P[ED]P[NS]G[YF][ARNDCQEGHILKMFPSTWYVBZJUOX]H[LI]GH', SUBSTR(?thisSequenceValue, ?thisPositionOn47, (?thisPositionOn48 - ?thisPositionOn47)))) . BIND(URI(CONCAT(STR(?this), '#MF_00126a44')) AS ?annotation44) . BIND(?this AS ?pfs43) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch182 faldo:location ?templateMotifSequenceMatchRegionP00962183 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP00962185 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP00962MF_00126178 . ?templateMotifSequenceMatchRegionP00962183 faldo:begin ?templateMotifSequenceMatchBeginP00962184 . ?templateMotifSequenceMatchBeginP00962184 faldo:position ?templateMotifSequenceMatchBeginPositionP00962179 ; faldo:reference isoform:P00962-1 . ?templateMotifSequenceProfileAlignmentOperationP00962185 edam:has_input signature:MF_00126 ; rdf:type edam:operation_0300 . ?targetMotifMatch186 faldo:location ?targetMotifMatchRegionMatch187 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00126189 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP00962MF_00126180 . ?targetMotifMatchRegionMatch187 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00126188 . ?targetMotifMatchRegionMatchBeginMF_00126188 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00126181 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_00126189 edam:has_input signature:MF_00126 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP00962MF_00126178, 1, (STRLEN(?templateMotifCigarP00962MF_00126178) - STRLEN(REPLACE(?templateMotifCigarP00962MF_00126178, CONCAT('^(?:-*[^-]){', STR(((268 - ?templateMotifSequenceMatchBeginPositionP00962179) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1190) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP00962MF_00126180, 1, (STRLEN(?targetMotifMatchCigarP00962MF_00126180) - STRLEN(REPLACE(?targetMotifMatchCigarP00962MF_00126180, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1190), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP00962MF_00126180, 1, (STRLEN(?targetMotifMatchCigarP00962MF_00126180) - STRLEN(REPLACE(?targetMotifMatchCigarP00962MF_00126180, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1190), '}'), '')))), '[^-]', ''))) AS ?step2191) . BIND(((?step2191 + ?targetMotifMatchRegionMatchBeginPositionMF_00126181) - 1) AS ?thisPositionOn53) . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP00962MF_00126178, 1, (STRLEN(?templateMotifCigarP00962MF_00126178) - STRLEN(REPLACE(?templateMotifCigarP00962MF_00126178, CONCAT('^(?:-*[^-]){', STR(((272 - ?templateMotifSequenceMatchBeginPositionP00962179) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1192) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP00962MF_00126180, 1, (STRLEN(?targetMotifMatchCigarP00962MF_00126180) - STRLEN(REPLACE(?targetMotifMatchCigarP00962MF_00126180, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1192), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP00962MF_00126180, 1, (STRLEN(?targetMotifMatchCigarP00962MF_00126180) - STRLEN(REPLACE(?targetMotifMatchCigarP00962MF_00126180, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1192), '}'), '')))), '[^-]', ''))) AS ?step2193) . BIND(((?step2193 + ?targetMotifMatchRegionMatchBeginPositionMF_00126181) - 1) AS ?thisPositionOn54) . BIND(?this AS ?pfs1t194) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn53))) AS ?pfsb51) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn54))) AS ?pfse52) . FILTER (REGEX('[LVI][LMT]SKR', SUBSTR(?thisSequenceValue, ?thisPositionOn53, (?thisPositionOn54 - ?thisPositionOn53)))) . BIND(URI(CONCAT(STR(?this), '#MF_00126a50')) AS ?annotation50) . BIND(?this AS ?pfs49) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch199 faldo:location ?templateMotifSequenceMatchRegionP00962200 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP00962202 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP00962MF_00126195 . ?templateMotifSequenceMatchRegionP00962200 faldo:begin ?templateMotifSequenceMatchBeginP00962201 . ?templateMotifSequenceMatchBeginP00962201 faldo:position ?templateMotifSequenceMatchBeginPositionP00962196 ; faldo:reference isoform:P00962-1 . ?templateMotifSequenceProfileAlignmentOperationP00962202 edam:has_input signature:MF_00126 ; rdf:type edam:operation_0300 . ?targetMotifMatch203 faldo:location ?targetMotifMatchRegionMatch204 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00126206 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP00962MF_00126197 . ?targetMotifMatchRegionMatch204 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00126205 . ?targetMotifMatchRegionMatchBeginMF_00126205 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00126198 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_00126206 edam:has_input signature:MF_00126 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP00962MF_00126195, 1, (STRLEN(?templateMotifCigarP00962MF_00126195) - STRLEN(REPLACE(?templateMotifCigarP00962MF_00126195, CONCAT('^(?:-*[^-]){', STR(((67 - ?templateMotifSequenceMatchBeginPositionP00962196) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1207) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP00962MF_00126197, 1, (STRLEN(?targetMotifMatchCigarP00962MF_00126197) - STRLEN(REPLACE(?targetMotifMatchCigarP00962MF_00126197, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1207), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP00962MF_00126197, 1, (STRLEN(?targetMotifMatchCigarP00962MF_00126197) - STRLEN(REPLACE(?targetMotifMatchCigarP00962MF_00126197, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1207), '}'), '')))), '[^-]', ''))) AS ?step2208) . BIND(((?step2208 + ?targetMotifMatchRegionMatchBeginPositionMF_00126198) - 1) AS ?thisPositionOn60) . BIND(?thisPositionOn60 AS ?thisPositionOn61) . BIND(?this AS ?pfs1t209) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn60))) AS ?pfsb57) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn61))) AS ?pfse58) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn60, 1) = 'D')) . BIND(URI(CONCAT(STR(?this), '#MF_00126a56')) AS ?annotation56) . BIND(?this AS ?pfs55) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch214 faldo:location ?templateMotifSequenceMatchRegionP00962215 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP00962217 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP00962MF_00126210 . ?templateMotifSequenceMatchRegionP00962215 faldo:begin ?templateMotifSequenceMatchBeginP00962216 . ?templateMotifSequenceMatchBeginP00962216 faldo:position ?templateMotifSequenceMatchBeginPositionP00962211 ; faldo:reference isoform:P00962-1 . ?templateMotifSequenceProfileAlignmentOperationP00962217 edam:has_input signature:MF_00126 ; rdf:type edam:operation_0300 . ?targetMotifMatch218 faldo:location ?targetMotifMatchRegionMatch219 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00126221 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP00962MF_00126212 . ?targetMotifMatchRegionMatch219 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00126220 . ?targetMotifMatchRegionMatchBeginMF_00126220 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00126213 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_00126221 edam:has_input signature:MF_00126 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP00962MF_00126210, 1, (STRLEN(?templateMotifCigarP00962MF_00126210) - STRLEN(REPLACE(?templateMotifCigarP00962MF_00126210, CONCAT('^(?:-*[^-]){', STR(((212 - ?templateMotifSequenceMatchBeginPositionP00962211) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1222) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP00962MF_00126212, 1, (STRLEN(?targetMotifMatchCigarP00962MF_00126212) - STRLEN(REPLACE(?targetMotifMatchCigarP00962MF_00126212, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1222), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP00962MF_00126212, 1, (STRLEN(?targetMotifMatchCigarP00962MF_00126212) - STRLEN(REPLACE(?targetMotifMatchCigarP00962MF_00126212, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1222), '}'), '')))), '[^-]', ''))) AS ?step2223) . BIND(((?step2223 + ?targetMotifMatchRegionMatchBeginPositionMF_00126213) - 1) AS ?thisPositionOn67) . BIND(?thisPositionOn67 AS ?thisPositionOn68) . BIND(?this AS ?pfs1t224) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn67))) AS ?pfsb64) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn68))) AS ?pfse65) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn67, 1) = 'Y')) . BIND(URI(CONCAT(STR(?this), '#MF_00126a63')) AS ?annotation63) . BIND(?this AS ?pfs62) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch229 faldo:location ?templateMotifSequenceMatchRegionP00962230 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP00962232 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP00962MF_00126225 . ?templateMotifSequenceMatchRegionP00962230 faldo:begin ?templateMotifSequenceMatchBeginP00962231 . ?templateMotifSequenceMatchBeginP00962231 faldo:position ?templateMotifSequenceMatchBeginPositionP00962226 ; faldo:reference isoform:P00962-1 . ?templateMotifSequenceProfileAlignmentOperationP00962232 edam:has_input signature:MF_00126 ; rdf:type edam:operation_0300 . ?targetMotifMatch233 faldo:location ?targetMotifMatchRegionMatch234 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00126236 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP00962MF_00126227 . ?targetMotifMatchRegionMatch234 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00126235 . ?targetMotifMatchRegionMatchBeginMF_00126235 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00126228 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_00126236 edam:has_input signature:MF_00126 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP00962MF_00126225, 1, (STRLEN(?templateMotifCigarP00962MF_00126225) - STRLEN(REPLACE(?templateMotifCigarP00962MF_00126225, CONCAT('^(?:-*[^-]){', STR(((231 - ?templateMotifSequenceMatchBeginPositionP00962226) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1237) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP00962MF_00126227, 1, (STRLEN(?targetMotifMatchCigarP00962MF_00126227) - STRLEN(REPLACE(?targetMotifMatchCigarP00962MF_00126227, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1237), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP00962MF_00126227, 1, (STRLEN(?targetMotifMatchCigarP00962MF_00126227) - STRLEN(REPLACE(?targetMotifMatchCigarP00962MF_00126227, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1237), '}'), '')))), '[^-]', ''))) AS ?step2238) . BIND(((?step2238 + ?targetMotifMatchRegionMatchBeginPositionMF_00126228) - 1) AS ?thisPositionOn74) . BIND(?thisPositionOn74 AS ?thisPositionOn75) . BIND(?this AS ?pfs1t239) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn74))) AS ?pfsb71) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn75))) AS ?pfse72) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn74, 1) = 'T')) . BIND(URI(CONCAT(STR(?this), '#MF_00126a70')) AS ?annotation70) . BIND(?this AS ?pfs69) . } }