CONSTRUCT { _:63020 up:source unirule:MF_00158 . _:63021 up:source unirule:MF_00158 . _:63022 up:source unirule:MF_00158 . _:63023 up:source unirule:MF_00158 . _:63024 up:source unirule:MF_00158 . _:63025 up:source unirule:MF_00158 . _:63026 up:source unirule:MF_00158 . _:63027 up:source unirule:MF_00158 . _:63028 up:source unirule:MF_00158 . _:63029 up:source unirule:MF_00158 . _:63030 up:source unirule:MF_00158 . _:63031 up:source unirule:MF_00158 . _:63032 up:source unirule:MF_00158 . _:63033 up:source unirule:MF_00158 . _:63034 up:source unirule:MF_00158 . _:63035 up:source unirule:MF_00158 . _:63036 up:source unirule:MF_00158 . _:63037 up:source unirule:MF_00158 . _:63038 up:source unirule:MF_00158 . _:63039 up:source unirule:MF_00158 . _:63040 up:source unirule:MF_00158 . _:63041 up:source unirule:MF_00158 . _:63042 up:source unirule:MF_00158 . _:63043 up:source unirule:MF_00158 . _:63044 up:source unirule:MF_00158 . _:63045 up:source unirule:MF_00158 . _:63046 up:source unirule:MF_00158 . ?this up:alternativeName ?name1 , ?name2 ; up:annotation ?annotation4 , ?annotation5 , ?annotation7 , ?annotation8 , ?annotation9 , ?annotation11 , ?annotation12 ; up:classifiedWith GO:0004592 , GO:0005737 , GO:0015940 , keyword:436 , keyword:547 , keyword:566 , keyword:67 , keyword:963 ; up:recommendedName ?name0 . ?name0 up:ecName '6.3.2.1' ; up:fullName 'Pantothenate synthetase' ; up:shortName 'PS' ; rdf:type up:Structured_Name . ?name1 up:fullName 'Pantoate--beta-alanine ligase' ; rdf:type up:Structured_Name . ?name2 up:fullName 'Pantoate-activating enzyme' ; rdf:type up:Structured_Name . ?gene3 skos:prefLabel 'panC' . ?annotation4 a up:Function_Annotation ; rdfs:comment 'Catalyzes the condensation of pantoate with beta-alanine in an ATP-dependent reaction via a pantoyl-adenylate intermediate.' . ?annotation5 up:activity ?activity6 ; rdf:type up:Catalytic_Activity_Annotation . ?activity6 up:catalyticActivity <http://rdf.rhea-db.org/10912>; up:enzymeClass <http://purl.uniprot.org/enzyme/6.3.2.1>. ?annotation7 a up:Pathway_Annotation ; rdfs:comment 'Cofactor biosynthesis; (R)-pantothenate biosynthesis; (R)-pantothenate from (R)-pantoate and beta-alanine: step 1/1.' . ?annotation8 a up:Subunit_Annotation ; rdfs:comment 'Homodimer.' . ?annotation9 a up:Subcellular_Location_Annotation . ?annotation9li10 up:cellularComponent <http://purl.uniprot.org/locations/null>. ?annotation11 a up:Annotation ; rdfs:comment 'The reaction proceeds by a bi uni uni bi ping pong mechanism.' . ?annotation12 a up:Similarity_Annotation ; rdfs:comment 'Belongs to the pantothenate synthetase family.' . ?pfs13 up:annotation ?annotation14 . ?annotation14 faldo:begin ?pfsb15 ; faldo:end ?pfse16 ; up:ligand ?ligand17 ; rdf:type up:Binding_Site_Annotation . ?pfsb15 faldo:position ?thisPositionOn18 ; rdf:type faldo:ExactPosition . ?pfse16 faldo:position ?thisPositionOn19 ; rdf:type faldo:ExactPosition . ?ligand17 rdfs:subClassOf chebi:30616 . ?pfs20 up:annotation ?annotation21 . ?annotation21 faldo:begin ?pfsb22 ; faldo:end ?pfse23 ; up:ligand ?ligand24 ; rdf:type up:Binding_Site_Annotation . ?pfsb22 faldo:position ?thisPositionOn25 ; rdf:type faldo:ExactPosition . ?pfse23 faldo:position ?thisPositionOn26 ; rdf:type faldo:ExactPosition . ?ligand24 rdfs:subClassOf chebi:30616 . ?pfs27 up:annotation ?annotation28 . ?annotation28 faldo:begin ?pfsb29 ; faldo:end ?pfse30 ; up:ligand ?ligand31 ; rdf:type up:Binding_Site_Annotation . ?pfsb29 faldo:position ?thisPositionOn32 ; rdf:type faldo:ExactPosition . ?pfse30 faldo:position ?thisPositionOn33 ; rdf:type faldo:ExactPosition . ?ligand31 rdfs:subClassOf chebi:30616 . ?pfs34 up:annotation ?annotation35 . ?annotation35 faldo:begin ?pfsb36 ; faldo:end ?pfse37 ; rdf:type up:Active_Site_Annotation ; rdfs:comment 'Proton donor' . ?pfsb36 faldo:position ?thisPositionOn38 ; rdf:type faldo:ExactPosition . ?pfse37 faldo:position ?thisPositionOn39 ; rdf:type faldo:ExactPosition . ?pfs40 up:annotation ?annotation41 . ?annotation41 faldo:begin ?pfsb42 ; faldo:end ?pfse43 ; up:ligand ?ligand44 ; rdf:type up:Binding_Site_Annotation . ?pfsb42 faldo:position ?thisPositionOn45 ; rdf:type faldo:ExactPosition . ?pfse43 faldo:position ?thisPositionOn46 ; rdf:type faldo:ExactPosition . ?ligand44 rdfs:subClassOf chebi:57966 . ?pfs47 up:annotation ?annotation48 . ?annotation48 faldo:begin ?pfsb49 ; faldo:end ?pfse50 ; up:ligand ?ligand51 ; rdf:type up:Binding_Site_Annotation . ?pfsb49 faldo:position ?thisPositionOn52 ; rdf:type faldo:ExactPosition . ?pfse50 faldo:position ?thisPositionOn53 ; rdf:type faldo:ExactPosition . ?ligand51 rdfs:subClassOf chebi:15980 . ?pfs54 up:annotation ?annotation55 . ?annotation55 faldo:begin ?pfsb56 ; faldo:end ?pfse57 ; up:ligand ?ligand58 ; rdf:type up:Binding_Site_Annotation . ?pfsb56 faldo:position ?thisPositionOn59 ; rdf:type faldo:ExactPosition . ?pfse57 faldo:position ?thisPositionOn60 ; rdf:type faldo:ExactPosition . ?ligand58 rdfs:subClassOf chebi:15980 . ?pfs61 up:annotation ?annotation62 . ?annotation62 faldo:begin ?pfsb63 ; faldo:end ?pfse64 ; up:ligand ?ligand65 ; rdf:type up:Binding_Site_Annotation . ?pfsb63 faldo:position ?thisPositionOn66 ; rdf:type faldo:ExactPosition . ?pfse64 faldo:position ?thisPositionOn67 ; rdf:type faldo:ExactPosition . ?ligand65 rdfs:subClassOf chebi:30616 . _:63047 a rdf:Statement ; up:attribution _:63020 ; rdf:subject ?this ; rdf:predicate up:recommendedName ; rdf:object ?name0 . _:63048 a rdf:Statement ; up:attribution _:63021 ; rdf:subject ?this ; rdf:predicate up:alternativeName ; rdf:object ?name1 . _:63049 a rdf:Statement ; up:attribution _:63022 ; rdf:subject ?this ; rdf:predicate up:alternativeName ; rdf:object ?name2 . _:63050 a rdf:Statement ; up:attribution _:63023 ; rdf:subject ?gene3 ; rdf:predicate up:encodedBy ; rdf:object ?gene3 . _:63051 a rdf:Statement ; up:attribution _:63024 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation4 . _:63052 a rdf:Statement ; up:attribution _:63025 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation5 . _:63053 a rdf:Statement ; up:attribution _:63026 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation7 . _:63054 a rdf:Statement ; up:attribution _:63027 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation8 . _:63055 a rdf:Statement ; up:attribution _:63028 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation9 . _:63056 a rdf:Statement ; up:attribution _:63029 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation11 . _:63057 a rdf:Statement ; up:attribution _:63030 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation12 . _:63058 a rdf:Statement ; up:attribution _:63031 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:67 . _:63059 a rdf:Statement ; up:attribution _:63032 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:963 . _:63060 a rdf:Statement ; up:attribution _:63033 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:436 . _:63061 a rdf:Statement ; up:attribution _:63034 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:547 . _:63062 a rdf:Statement ; up:attribution _:63035 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:566 . _:63063 a rdf:Statement ; up:attribution _:63036 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object GO:0004592 . _:63064 a rdf:Statement ; up:attribution _:63037 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object GO:0015940 . _:63065 a rdf:Statement ; up:attribution _:63038 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object GO:0005737 . _:63066 a rdf:Statement ; up:source unirule:MF_00158 ; rdf:subject ?pfs13 ; rdf:predicate up:annotation ; rdf:object ?annotation14 . _:63067 a rdf:Statement ; up:attribution _:63039 ; rdf:subject ?pfs13 ; rdf:predicate up:annotation ; rdf:object ?annotation14 . _:63068 a rdf:Statement ; up:source unirule:MF_00158 ; rdf:subject ?pfs20 ; rdf:predicate up:annotation ; rdf:object ?annotation21 . _:63069 a rdf:Statement ; up:attribution _:63040 ; rdf:subject ?pfs20 ; rdf:predicate up:annotation ; rdf:object ?annotation21 . _:63070 a rdf:Statement ; up:source unirule:MF_00158 ; rdf:subject ?pfs27 ; rdf:predicate up:annotation ; rdf:object ?annotation28 . _:63071 a rdf:Statement ; up:attribution _:63041 ; rdf:subject ?pfs27 ; rdf:predicate up:annotation ; rdf:object ?annotation28 . _:63072 a rdf:Statement ; up:source unirule:MF_00158 ; rdf:subject ?pfs34 ; rdf:predicate up:annotation ; rdf:object ?annotation35 . _:63073 a rdf:Statement ; up:attribution _:63042 ; rdf:subject ?pfs34 ; rdf:predicate up:annotation ; rdf:object ?annotation35 . _:63074 a rdf:Statement ; up:source unirule:MF_00158 ; rdf:subject ?pfs40 ; rdf:predicate up:annotation ; rdf:object ?annotation41 . _:63075 a rdf:Statement ; up:attribution _:63043 ; rdf:subject ?pfs40 ; rdf:predicate up:annotation ; rdf:object ?annotation41 . _:63076 a rdf:Statement ; up:source unirule:MF_00158 ; rdf:subject ?pfs47 ; rdf:predicate up:annotation ; rdf:object ?annotation48 . _:63077 a rdf:Statement ; up:attribution _:63044 ; rdf:subject ?pfs47 ; rdf:predicate up:annotation ; rdf:object ?annotation48 . _:63078 a rdf:Statement ; up:source unirule:MF_00158 ; rdf:subject ?pfs54 ; rdf:predicate up:annotation ; rdf:object ?annotation55 . _:63079 a rdf:Statement ; up:attribution _:63045 ; rdf:subject ?pfs54 ; rdf:predicate up:annotation ; rdf:object ?annotation55 . _:63080 a rdf:Statement ; up:source unirule:MF_00158 ; rdf:subject ?pfs61 ; rdf:predicate up:annotation ; rdf:object ?annotation62 . _:63081 a rdf:Statement ; up:attribution _:63046 ; rdf:subject ?pfs61 ; rdf:predicate up:annotation ; rdf:object ?annotation62 . } WHERE { #baseURI: http://purl.uniprot.org/unirule/MF_00158 #Rule MF_00158 Created by:? on:2005-02-28 Modified by:Edouard de Castro on:2024-09-02 ?this up:organism ?thisOrganism ; rdfs:seeAlso signature:MF_00158 . ?thisOrganism rdfs:subClassOf+ taxon:2 . FILTER (! (EXISTS { ?this rdfs:seeAlso signature:MF_01349 . })) . FILTER (! (EXISTS { ?thisOrganism rdfs:subClassOf+ taxon:1117 . })) . BIND(URI(CONCAT(STR(?this), '#MF_00158a0')) AS ?name0) . BIND(URI(CONCAT(STR(?this), '#MF_00158a1')) AS ?name1) . BIND(URI(CONCAT(STR(?this), '#MF_00158a2')) AS ?name2) . BIND(URI(CONCAT(STR(?this), '#MF_00158a4')) AS ?annotation4) . BIND(URI(CONCAT(STR(?this), '#MF_00158a5')) AS ?annotation5) . BIND(URI(CONCAT(STR(?this), '#MF_00158a7')) AS ?annotation7) . BIND(URI(CONCAT(STR(?this), '#MF_00158a8')) AS ?annotation8) . BIND(URI(CONCAT(STR(?this), '#MF_00158a9')) AS ?annotation9) . BIND(URI(CONCAT(STR(?this), '#MF_00158a11')) AS ?annotation11) . BIND(URI(CONCAT(STR(?this), '#MF_00158a12')) AS ?annotation12) . OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch72 faldo:location ?templateMotifSequenceMatchRegionP9WIL573 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP9WIL575 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP9WIL5MF_0015868 . ?templateMotifSequenceMatchRegionP9WIL573 faldo:begin ?templateMotifSequenceMatchBeginP9WIL574 . ?templateMotifSequenceMatchBeginP9WIL574 faldo:position ?templateMotifSequenceMatchBeginPositionP9WIL569 ; faldo:reference isoform:P9WIL5-1 . ?templateMotifSequenceProfileAlignmentOperationP9WIL575 edam:has_input signature:MF_00158 ; rdf:type edam:operation_0300 . ?targetMotifMatch76 faldo:location ?targetMotifMatchRegionMatch77 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0015879 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP9WIL5MF_0015870 . ?targetMotifMatchRegionMatch77 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0015878 . ?targetMotifMatchRegionMatchBeginMF_0015878 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0015871 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_0015879 edam:has_input signature:MF_00158 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP9WIL5MF_0015868, 1, (STRLEN(?templateMotifCigarP9WIL5MF_0015868) - STRLEN(REPLACE(?templateMotifCigarP9WIL5MF_0015868, CONCAT('^(?:-*[^-]){', STR(((40 - ?templateMotifSequenceMatchBeginPositionP9WIL569) + 1)), '}'), '')))), '[a-z]', '')) AS ?step180) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP9WIL5MF_0015870, 1, (STRLEN(?targetMotifMatchCigarP9WIL5MF_0015870) - STRLEN(REPLACE(?targetMotifMatchCigarP9WIL5MF_0015870, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step180), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP9WIL5MF_0015870, 1, (STRLEN(?targetMotifMatchCigarP9WIL5MF_0015870) - STRLEN(REPLACE(?targetMotifMatchCigarP9WIL5MF_0015870, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step180), '}'), '')))), '[^-]', ''))) AS ?step281) . BIND(((?step281 + ?targetMotifMatchRegionMatchBeginPositionMF_0015871) - 1) AS ?thisPositionOn18) . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP9WIL5MF_0015868, 1, (STRLEN(?templateMotifCigarP9WIL5MF_0015868) - STRLEN(REPLACE(?templateMotifCigarP9WIL5MF_0015868, CONCAT('^(?:-*[^-]){', STR(((47 - ?templateMotifSequenceMatchBeginPositionP9WIL569) + 1)), '}'), '')))), '[a-z]', '')) AS ?step182) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP9WIL5MF_0015870, 1, (STRLEN(?targetMotifMatchCigarP9WIL5MF_0015870) - STRLEN(REPLACE(?targetMotifMatchCigarP9WIL5MF_0015870, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step182), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP9WIL5MF_0015870, 1, (STRLEN(?targetMotifMatchCigarP9WIL5MF_0015870) - STRLEN(REPLACE(?targetMotifMatchCigarP9WIL5MF_0015870, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step182), '}'), '')))), '[^-]', ''))) AS ?step283) . BIND(((?step283 + ?targetMotifMatchRegionMatchBeginPositionMF_0015871) - 1) AS ?thisPositionOn19) . BIND(?this AS ?pfs1t84) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn18))) AS ?pfsb15) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn19))) AS ?pfse16) . FILTER (REGEX('M[ARNDCQEGHILKMFPSTWYVBZJUOX]{3)H[ARNDCQEGHILKMFPSTWYVBZJUOX]{2)H', SUBSTR(?thisSequenceValue, ?thisPositionOn18, (?thisPositionOn19 - ?thisPositionOn18)))) . BIND(URI(CONCAT(STR(?this), '#MF_00158a14')) AS ?annotation14) . BIND(?this AS ?pfs13) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch89 faldo:location ?templateMotifSequenceMatchRegionP9WIL590 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP9WIL592 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP9WIL5MF_0015885 . ?templateMotifSequenceMatchRegionP9WIL590 faldo:begin ?templateMotifSequenceMatchBeginP9WIL591 . ?templateMotifSequenceMatchBeginP9WIL591 faldo:position ?templateMotifSequenceMatchBeginPositionP9WIL586 ; faldo:reference isoform:P9WIL5-1 . ?templateMotifSequenceProfileAlignmentOperationP9WIL592 edam:has_input signature:MF_00158 ; rdf:type edam:operation_0300 . ?targetMotifMatch93 faldo:location ?targetMotifMatchRegionMatch94 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0015896 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP9WIL5MF_0015887 . ?targetMotifMatchRegionMatch94 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0015895 . ?targetMotifMatchRegionMatchBeginMF_0015895 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0015888 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_0015896 edam:has_input signature:MF_00158 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP9WIL5MF_0015885, 1, (STRLEN(?templateMotifCigarP9WIL5MF_0015885) - STRLEN(REPLACE(?templateMotifCigarP9WIL5MF_0015885, CONCAT('^(?:-*[^-]){', STR(((158 - ?templateMotifSequenceMatchBeginPositionP9WIL586) + 1)), '}'), '')))), '[a-z]', '')) AS ?step197) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP9WIL5MF_0015887, 1, (STRLEN(?targetMotifMatchCigarP9WIL5MF_0015887) - STRLEN(REPLACE(?targetMotifMatchCigarP9WIL5MF_0015887, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step197), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP9WIL5MF_0015887, 1, (STRLEN(?targetMotifMatchCigarP9WIL5MF_0015887) - STRLEN(REPLACE(?targetMotifMatchCigarP9WIL5MF_0015887, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step197), '}'), '')))), '[^-]', ''))) AS ?step298) . BIND(((?step298 + ?targetMotifMatchRegionMatchBeginPositionMF_0015888) - 1) AS ?thisPositionOn25) . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP9WIL5MF_0015885, 1, (STRLEN(?templateMotifCigarP9WIL5MF_0015885) - STRLEN(REPLACE(?templateMotifCigarP9WIL5MF_0015885, CONCAT('^(?:-*[^-]){', STR(((161 - ?templateMotifSequenceMatchBeginPositionP9WIL586) + 1)), '}'), '')))), '[a-z]', '')) AS ?step199) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP9WIL5MF_0015887, 1, (STRLEN(?targetMotifMatchCigarP9WIL5MF_0015887) - STRLEN(REPLACE(?targetMotifMatchCigarP9WIL5MF_0015887, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step199), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP9WIL5MF_0015887, 1, (STRLEN(?targetMotifMatchCigarP9WIL5MF_0015887) - STRLEN(REPLACE(?targetMotifMatchCigarP9WIL5MF_0015887, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step199), '}'), '')))), '[^-]', ''))) AS ?step2100) . BIND(((?step2100 + ?targetMotifMatchRegionMatchBeginPositionMF_0015888) - 1) AS ?thisPositionOn26) . BIND(?this AS ?pfs1t101) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn25))) AS ?pfsb22) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn26))) AS ?pfse23) . FILTER (REGEX('G[ARNDCQEGHILKMFPSTWYVBZJUOX]{2)D', SUBSTR(?thisSequenceValue, ?thisPositionOn25, (?thisPositionOn26 - ?thisPositionOn25)))) . BIND(URI(CONCAT(STR(?this), '#MF_00158a21')) AS ?annotation21) . BIND(?this AS ?pfs20) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch106 faldo:location ?templateMotifSequenceMatchRegionP9WIL5107 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP9WIL5109 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP9WIL5MF_00158102 . ?templateMotifSequenceMatchRegionP9WIL5107 faldo:begin ?templateMotifSequenceMatchBeginP9WIL5108 . ?templateMotifSequenceMatchBeginP9WIL5108 faldo:position ?templateMotifSequenceMatchBeginPositionP9WIL5103 ; faldo:reference isoform:P9WIL5-1 . ?templateMotifSequenceProfileAlignmentOperationP9WIL5109 edam:has_input signature:MF_00158 ; rdf:type edam:operation_0300 . ?targetMotifMatch110 faldo:location ?targetMotifMatchRegionMatch111 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00158113 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP9WIL5MF_00158104 . ?targetMotifMatchRegionMatch111 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00158112 . ?targetMotifMatchRegionMatchBeginMF_00158112 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00158105 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_00158113 edam:has_input signature:MF_00158 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP9WIL5MF_00158102, 1, (STRLEN(?templateMotifCigarP9WIL5MF_00158102) - STRLEN(REPLACE(?templateMotifCigarP9WIL5MF_00158102, CONCAT('^(?:-*[^-]){', STR(((195 - ?templateMotifSequenceMatchBeginPositionP9WIL5103) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1114) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP9WIL5MF_00158104, 1, (STRLEN(?targetMotifMatchCigarP9WIL5MF_00158104) - STRLEN(REPLACE(?targetMotifMatchCigarP9WIL5MF_00158104, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1114), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP9WIL5MF_00158104, 1, (STRLEN(?targetMotifMatchCigarP9WIL5MF_00158104) - STRLEN(REPLACE(?targetMotifMatchCigarP9WIL5MF_00158104, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1114), '}'), '')))), '[^-]', ''))) AS ?step2115) . BIND(((?step2115 + ?targetMotifMatchRegionMatchBeginPositionMF_00158105) - 1) AS ?thisPositionOn32) . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP9WIL5MF_00158102, 1, (STRLEN(?templateMotifCigarP9WIL5MF_00158102) - STRLEN(REPLACE(?templateMotifCigarP9WIL5MF_00158102, CONCAT('^(?:-*[^-]){', STR(((198 - ?templateMotifSequenceMatchBeginPositionP9WIL5103) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1116) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP9WIL5MF_00158104, 1, (STRLEN(?targetMotifMatchCigarP9WIL5MF_00158104) - STRLEN(REPLACE(?targetMotifMatchCigarP9WIL5MF_00158104, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1116), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP9WIL5MF_00158104, 1, (STRLEN(?targetMotifMatchCigarP9WIL5MF_00158104) - STRLEN(REPLACE(?targetMotifMatchCigarP9WIL5MF_00158104, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1116), '}'), '')))), '[^-]', ''))) AS ?step2117) . BIND(((?step2117 + ?targetMotifMatchRegionMatchBeginPositionMF_00158105) - 1) AS ?thisPositionOn33) . BIND(?this AS ?pfs1t118) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn32))) AS ?pfsb29) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn33))) AS ?pfse30) . FILTER (REGEX('[ARNDCQEGHILKMFPSTWYVBZJUOX]{3)R', SUBSTR(?thisSequenceValue, ?thisPositionOn32, (?thisPositionOn33 - ?thisPositionOn32)))) . BIND(URI(CONCAT(STR(?this), '#MF_00158a28')) AS ?annotation28) . BIND(?this AS ?pfs27) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch123 faldo:location ?templateMotifSequenceMatchRegionP9WIL5124 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP9WIL5126 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP9WIL5MF_00158119 . ?templateMotifSequenceMatchRegionP9WIL5124 faldo:begin ?templateMotifSequenceMatchBeginP9WIL5125 . ?templateMotifSequenceMatchBeginP9WIL5125 faldo:position ?templateMotifSequenceMatchBeginPositionP9WIL5120 ; faldo:reference isoform:P9WIL5-1 . ?templateMotifSequenceProfileAlignmentOperationP9WIL5126 edam:has_input signature:MF_00158 ; rdf:type edam:operation_0300 . ?targetMotifMatch127 faldo:location ?targetMotifMatchRegionMatch128 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00158130 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP9WIL5MF_00158121 . ?targetMotifMatchRegionMatch128 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00158129 . ?targetMotifMatchRegionMatchBeginMF_00158129 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00158122 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_00158130 edam:has_input signature:MF_00158 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP9WIL5MF_00158119, 1, (STRLEN(?templateMotifCigarP9WIL5MF_00158119) - STRLEN(REPLACE(?templateMotifCigarP9WIL5MF_00158119, CONCAT('^(?:-*[^-]){', STR(((47 - ?templateMotifSequenceMatchBeginPositionP9WIL5120) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1131) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP9WIL5MF_00158121, 1, (STRLEN(?targetMotifMatchCigarP9WIL5MF_00158121) - STRLEN(REPLACE(?targetMotifMatchCigarP9WIL5MF_00158121, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1131), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP9WIL5MF_00158121, 1, (STRLEN(?targetMotifMatchCigarP9WIL5MF_00158121) - STRLEN(REPLACE(?targetMotifMatchCigarP9WIL5MF_00158121, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1131), '}'), '')))), '[^-]', ''))) AS ?step2132) . BIND(((?step2132 + ?targetMotifMatchRegionMatchBeginPositionMF_00158122) - 1) AS ?thisPositionOn38) . BIND(?thisPositionOn38 AS ?thisPositionOn39) . BIND(?this AS ?pfs1t133) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn38))) AS ?pfsb36) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn39))) AS ?pfse37) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn38, 1) = 'H')) . BIND(URI(CONCAT(STR(?this), '#MF_00158a35')) AS ?annotation35) . BIND(?this AS ?pfs34) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch138 faldo:location ?templateMotifSequenceMatchRegionP9WIL5139 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP9WIL5141 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP9WIL5MF_00158134 . ?templateMotifSequenceMatchRegionP9WIL5139 faldo:begin ?templateMotifSequenceMatchBeginP9WIL5140 . ?templateMotifSequenceMatchBeginP9WIL5140 faldo:position ?templateMotifSequenceMatchBeginPositionP9WIL5135 ; faldo:reference isoform:P9WIL5-1 . ?templateMotifSequenceProfileAlignmentOperationP9WIL5141 edam:has_input signature:MF_00158 ; rdf:type edam:operation_0300 . ?targetMotifMatch142 faldo:location ?targetMotifMatchRegionMatch143 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00158145 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP9WIL5MF_00158136 . ?targetMotifMatchRegionMatch143 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00158144 . ?targetMotifMatchRegionMatchBeginMF_00158144 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00158137 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_00158145 edam:has_input signature:MF_00158 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP9WIL5MF_00158134, 1, (STRLEN(?templateMotifCigarP9WIL5MF_00158134) - STRLEN(REPLACE(?templateMotifCigarP9WIL5MF_00158134, CONCAT('^(?:-*[^-]){', STR(((72 - ?templateMotifSequenceMatchBeginPositionP9WIL5135) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1146) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP9WIL5MF_00158136, 1, (STRLEN(?targetMotifMatchCigarP9WIL5MF_00158136) - STRLEN(REPLACE(?targetMotifMatchCigarP9WIL5MF_00158136, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1146), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP9WIL5MF_00158136, 1, (STRLEN(?targetMotifMatchCigarP9WIL5MF_00158136) - STRLEN(REPLACE(?targetMotifMatchCigarP9WIL5MF_00158136, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1146), '}'), '')))), '[^-]', ''))) AS ?step2147) . BIND(((?step2147 + ?targetMotifMatchRegionMatchBeginPositionMF_00158137) - 1) AS ?thisPositionOn45) . BIND(?thisPositionOn45 AS ?thisPositionOn46) . BIND(?this AS ?pfs1t148) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn45))) AS ?pfsb42) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn46))) AS ?pfse43) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn45, 1) = 'Q')) . BIND(URI(CONCAT(STR(?this), '#MF_00158a41')) AS ?annotation41) . BIND(?this AS ?pfs40) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch153 faldo:location ?templateMotifSequenceMatchRegionP9WIL5154 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP9WIL5156 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP9WIL5MF_00158149 . ?templateMotifSequenceMatchRegionP9WIL5154 faldo:begin ?templateMotifSequenceMatchBeginP9WIL5155 . ?templateMotifSequenceMatchBeginP9WIL5155 faldo:position ?templateMotifSequenceMatchBeginPositionP9WIL5150 ; faldo:reference isoform:P9WIL5-1 . ?templateMotifSequenceProfileAlignmentOperationP9WIL5156 edam:has_input signature:MF_00158 ; rdf:type edam:operation_0300 . ?targetMotifMatch157 faldo:location ?targetMotifMatchRegionMatch158 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00158160 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP9WIL5MF_00158151 . ?targetMotifMatchRegionMatch158 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00158159 . ?targetMotifMatchRegionMatchBeginMF_00158159 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00158152 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_00158160 edam:has_input signature:MF_00158 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP9WIL5MF_00158149, 1, (STRLEN(?templateMotifCigarP9WIL5MF_00158149) - STRLEN(REPLACE(?templateMotifCigarP9WIL5MF_00158149, CONCAT('^(?:-*[^-]){', STR(((72 - ?templateMotifSequenceMatchBeginPositionP9WIL5150) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1161) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP9WIL5MF_00158151, 1, (STRLEN(?targetMotifMatchCigarP9WIL5MF_00158151) - STRLEN(REPLACE(?targetMotifMatchCigarP9WIL5MF_00158151, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1161), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP9WIL5MF_00158151, 1, (STRLEN(?targetMotifMatchCigarP9WIL5MF_00158151) - STRLEN(REPLACE(?targetMotifMatchCigarP9WIL5MF_00158151, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1161), '}'), '')))), '[^-]', ''))) AS ?step2162) . BIND(((?step2162 + ?targetMotifMatchRegionMatchBeginPositionMF_00158152) - 1) AS ?thisPositionOn52) . BIND(?thisPositionOn52 AS ?thisPositionOn53) . BIND(?this AS ?pfs1t163) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn52))) AS ?pfsb49) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn53))) AS ?pfse50) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn52, 1) = 'Q')) . BIND(URI(CONCAT(STR(?this), '#MF_00158a48')) AS ?annotation48) . BIND(?this AS ?pfs47) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch168 faldo:location ?templateMotifSequenceMatchRegionP9WIL5169 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP9WIL5171 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP9WIL5MF_00158164 . ?templateMotifSequenceMatchRegionP9WIL5169 faldo:begin ?templateMotifSequenceMatchBeginP9WIL5170 . ?templateMotifSequenceMatchBeginP9WIL5170 faldo:position ?templateMotifSequenceMatchBeginPositionP9WIL5165 ; faldo:reference isoform:P9WIL5-1 . ?templateMotifSequenceProfileAlignmentOperationP9WIL5171 edam:has_input signature:MF_00158 ; rdf:type edam:operation_0300 . ?targetMotifMatch172 faldo:location ?targetMotifMatchRegionMatch173 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00158175 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP9WIL5MF_00158166 . ?targetMotifMatchRegionMatch173 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00158174 . ?targetMotifMatchRegionMatchBeginMF_00158174 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00158167 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_00158175 edam:has_input signature:MF_00158 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP9WIL5MF_00158164, 1, (STRLEN(?templateMotifCigarP9WIL5MF_00158164) - STRLEN(REPLACE(?templateMotifCigarP9WIL5MF_00158164, CONCAT('^(?:-*[^-]){', STR(((164 - ?templateMotifSequenceMatchBeginPositionP9WIL5165) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1176) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP9WIL5MF_00158166, 1, (STRLEN(?targetMotifMatchCigarP9WIL5MF_00158166) - STRLEN(REPLACE(?targetMotifMatchCigarP9WIL5MF_00158166, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1176), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP9WIL5MF_00158166, 1, (STRLEN(?targetMotifMatchCigarP9WIL5MF_00158166) - STRLEN(REPLACE(?targetMotifMatchCigarP9WIL5MF_00158166, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1176), '}'), '')))), '[^-]', ''))) AS ?step2177) . BIND(((?step2177 + ?targetMotifMatchRegionMatchBeginPositionMF_00158167) - 1) AS ?thisPositionOn59) . BIND(?thisPositionOn59 AS ?thisPositionOn60) . BIND(?this AS ?pfs1t178) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn59))) AS ?pfsb56) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn60))) AS ?pfse57) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn59, 1) = 'Q')) . BIND(URI(CONCAT(STR(?this), '#MF_00158a55')) AS ?annotation55) . BIND(?this AS ?pfs54) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch183 faldo:location ?templateMotifSequenceMatchRegionP9WIL5184 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP9WIL5186 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP9WIL5MF_00158179 . ?templateMotifSequenceMatchRegionP9WIL5184 faldo:begin ?templateMotifSequenceMatchBeginP9WIL5185 . ?templateMotifSequenceMatchBeginP9WIL5185 faldo:position ?templateMotifSequenceMatchBeginPositionP9WIL5180 ; faldo:reference isoform:P9WIL5-1 . ?templateMotifSequenceProfileAlignmentOperationP9WIL5186 edam:has_input signature:MF_00158 ; rdf:type edam:operation_0300 . ?targetMotifMatch187 faldo:location ?targetMotifMatchRegionMatch188 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00158190 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP9WIL5MF_00158181 . ?targetMotifMatchRegionMatch188 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00158189 . ?targetMotifMatchRegionMatchBeginMF_00158189 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00158182 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_00158190 edam:has_input signature:MF_00158 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP9WIL5MF_00158179, 1, (STRLEN(?templateMotifCigarP9WIL5MF_00158179) - STRLEN(REPLACE(?templateMotifCigarP9WIL5MF_00158179, CONCAT('^(?:-*[^-]){', STR(((187 - ?templateMotifSequenceMatchBeginPositionP9WIL5180) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1191) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP9WIL5MF_00158181, 1, (STRLEN(?targetMotifMatchCigarP9WIL5MF_00158181) - STRLEN(REPLACE(?targetMotifMatchCigarP9WIL5MF_00158181, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1191), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP9WIL5MF_00158181, 1, (STRLEN(?targetMotifMatchCigarP9WIL5MF_00158181) - STRLEN(REPLACE(?targetMotifMatchCigarP9WIL5MF_00158181, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1191), '}'), '')))), '[^-]', ''))) AS ?step2192) . BIND(((?step2192 + ?targetMotifMatchRegionMatchBeginPositionMF_00158182) - 1) AS ?thisPositionOn66) . BIND(?thisPositionOn66 AS ?thisPositionOn67) . BIND(?this AS ?pfs1t193) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn66))) AS ?pfsb63) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn67))) AS ?pfse64) . FILTER (REGEX('[VLIGA]', SUBSTR(?thisSequenceValue, ?thisPositionOn66, 1))) . BIND(URI(CONCAT(STR(?this), '#MF_00158a62')) AS ?annotation62) . BIND(?this AS ?pfs61) . } }