CONSTRUCT { _:63048 up:source unirule:MF_00160 . _:63049 up:source unirule:MF_00160 . _:63050 up:source unirule:MF_00160 . _:63051 up:source unirule:MF_00160 . _:63052 up:source unirule:MF_00160 . _:63053 up:source unirule:MF_00160 . _:63054 up:source unirule:MF_00160 . _:63055 up:source unirule:MF_00160 . _:63056 up:source unirule:MF_00160 . _:63057 up:source unirule:MF_00160 . _:63058 up:source unirule:MF_00160 . _:63059 up:source unirule:MF_00160 . _:63060 up:source unirule:MF_00160 . _:63061 up:source unirule:MF_00160 . _:63062 up:source unirule:MF_00160 . _:63063 up:source unirule:MF_00160 . _:63064 up:source unirule:MF_00160 . _:63065 up:source unirule:MF_00160 . _:63066 up:source unirule:MF_00160 . _:63067 up:source unirule:MF_00160 . _:63068 up:source unirule:MF_00160 . _:63069 up:source unirule:MF_00160 . _:63070 up:source unirule:MF_00160 . _:63071 up:source unirule:MF_00160 . _:63072 up:source unirule:MF_00160 . _:63073 up:source unirule:MF_00160 . _:63074 up:source unirule:MF_00160 . _:63075 up:source unirule:MF_00160 . _:63076 up:source unirule:MF_00160 . _:63077 up:source unirule:MF_00160 . _:63078 up:source unirule:MF_00160 . _:63079 up:source unirule:MF_00160 . ?this up:alternativeName ?name1 ; up:annotation ?annotation3 , ?annotation4 , ?annotation6 , ?annotation8 , ?annotation9 , ?annotation10 , ?annotation11 , ?annotation13 ; up:classifiedWith GO:0004648 , GO:0005737 , GO:0006564 , GO:0030170 , keyword:28 , keyword:32 , keyword:663 , keyword:718 , keyword:808 , keyword:963 ; up:recommendedName ?name0 . ?name0 up:ecName '2.6.1.52' ; up:fullName 'Phosphoserine aminotransferase' ; rdf:type up:Structured_Name . ?name1 up:fullName 'Phosphohydroxythreonine aminotransferase' ; up:shortName 'PSAT' ; rdf:type up:Structured_Name . ?gene2 skos:prefLabel 'serC' . ?annotation3 a up:Function_Annotation ; rdfs:comment 'Catalyzes the reversible conversion of 3-phosphohydroxypyruvate to phosphoserine and of 3-hydroxy-2-oxo-4-phosphonooxybutanoate to phosphohydroxythreonine.' . ?annotation4 up:activity ?activity5 ; rdf:type up:Catalytic_Activity_Annotation . ?activity5 up:catalyticActivity <http://rdf.rhea-db.org/14329>; up:enzymeClass <http://purl.uniprot.org/enzyme/2.6.1.52>. ?annotation6 up:activity ?activity7 ; rdf:type up:Catalytic_Activity_Annotation . ?activity7 up:catalyticActivity <http://rdf.rhea-db.org/16573>; up:enzymeClass <http://purl.uniprot.org/enzyme/2.6.1.52>. ?annotation8 up:cofactor chebi:597326 ; rdf:type up:Cofactor_Annotation ; rdfs:comment 'Binds 1 pyridoxal phosphate per subunit.' . ?annotation9 a up:Pathway_Annotation ; rdfs:comment 'Amino-acid biosynthesis; L-serine biosynthesis; L-serine from 3-phospho-D-glycerate: step 2/3.' . ?annotation10 a up:Subunit_Annotation ; rdfs:comment 'Homodimer.' . ?annotation11 a up:Subcellular_Location_Annotation . ?annotation11li12 up:cellularComponent <http://purl.uniprot.org/locations/null>. ?annotation13 a up:Similarity_Annotation ; rdfs:comment 'Belongs to the class-V pyridoxal-phosphate-dependent aminotransferase family. SerC subfamily.' . ?case14 up:classifiedWith GO:0008615 , keyword:664 . ?pfs15 up:annotation ?annotation16 . ?annotation16 faldo:begin ?pfsb17 ; faldo:end ?pfse18 ; up:ligand ?ligand19 ; rdf:type up:Binding_Site_Annotation . ?pfsb17 faldo:position ?thisPositionOn20 ; rdf:type faldo:ExactPosition . ?pfse18 faldo:position ?thisPositionOn21 ; rdf:type faldo:ExactPosition . ?ligand19 rdfs:subClassOf chebi:597326 . ?pfs22 up:annotation ?annotation23 . ?annotation23 faldo:begin ?pfsb24 ; faldo:end ?pfse25 ; up:ligand ?ligand26 ; rdf:type up:Binding_Site_Annotation . ?pfsb24 faldo:position ?thisPositionOn27 ; rdf:type faldo:ExactPosition . ?pfse25 faldo:position ?thisPositionOn28 ; rdf:type faldo:ExactPosition . ?ligand26 rdfs:subClassOf chebi:597326 . ?pfs29 up:annotation ?annotation30 . ?annotation30 faldo:begin ?pfsb31 ; faldo:end ?pfse32 ; up:ligand ?ligand33 ; rdf:type up:Binding_Site_Annotation . ?pfsb31 faldo:position ?thisPositionOn34 ; rdf:type faldo:ExactPosition . ?pfse32 faldo:position ?thisPositionOn35 ; rdf:type faldo:ExactPosition . ?ligand33 rdfs:subClassOf chebi:29985 . ?pfs36 up:annotation ?annotation37 . ?annotation37 faldo:begin ?pfsb38 ; faldo:end ?pfse39 ; up:ligand ?ligand40 ; rdf:type up:Binding_Site_Annotation . ?pfsb38 faldo:position ?thisPositionOn41 ; rdf:type faldo:ExactPosition . ?pfse39 faldo:position ?thisPositionOn42 ; rdf:type faldo:ExactPosition . ?ligand40 rdfs:subClassOf chebi:29985 . ?pfs43 up:annotation ?annotation44 . ?annotation44 faldo:begin ?pfsb45 ; faldo:end ?pfse46 ; up:ligand ?ligand47 ; rdf:type up:Binding_Site_Annotation . ?pfsb45 faldo:position ?thisPositionOn48 ; rdf:type faldo:ExactPosition . ?pfse46 faldo:position ?thisPositionOn49 ; rdf:type faldo:ExactPosition . ?ligand47 rdfs:subClassOf chebi:597326 . ?pfs50 up:annotation ?annotation51 . ?annotation51 faldo:begin ?pfsb52 ; faldo:end ?pfse53 ; up:ligand ?ligand54 ; rdf:type up:Binding_Site_Annotation . ?pfsb52 faldo:position ?thisPositionOn55 ; rdf:type faldo:ExactPosition . ?pfse53 faldo:position ?thisPositionOn56 ; rdf:type faldo:ExactPosition . ?ligand54 rdfs:subClassOf chebi:597326 . ?pfs57 up:annotation ?annotation58 . ?annotation58 faldo:begin ?pfsb59 ; faldo:end ?pfse60 ; up:ligand ?ligand61 ; rdf:type up:Binding_Site_Annotation . ?pfsb59 faldo:position ?thisPositionOn62 ; rdf:type faldo:ExactPosition . ?pfse60 faldo:position ?thisPositionOn63 ; rdf:type faldo:ExactPosition . ?ligand61 rdfs:subClassOf chebi:597326 . ?pfs64 up:annotation ?annotation65 . ?annotation65 faldo:begin ?pfsb66 ; faldo:end ?pfse67 ; up:ligand ?ligand68 ; rdf:type up:Binding_Site_Annotation . ?pfsb66 faldo:position ?thisPositionOn69 ; rdf:type faldo:ExactPosition . ?pfse67 faldo:position ?thisPositionOn70 ; rdf:type faldo:ExactPosition . ?ligand68 rdfs:subClassOf chebi:597326 . ?pfs71 up:annotation ?annotation72 . ?annotation72 faldo:begin ?pfsb73 ; faldo:end ?pfse74 ; rdf:type up:Modified_Residue_Annotation ; rdfs:comment 'N6-(pyridoxal phosphate)lysine' . ?pfsb73 faldo:position ?thisPositionOn75 ; rdf:type faldo:ExactPosition . ?pfse74 faldo:position ?thisPositionOn76 ; rdf:type faldo:ExactPosition . _:63080 a rdf:Statement ; up:attribution _:63048 ; rdf:subject ?this ; rdf:predicate up:recommendedName ; rdf:object ?name0 . _:63081 a rdf:Statement ; up:attribution _:63049 ; rdf:subject ?this ; rdf:predicate up:alternativeName ; rdf:object ?name1 . _:63082 a rdf:Statement ; up:attribution _:63050 ; rdf:subject ?gene2 ; rdf:predicate up:encodedBy ; rdf:object ?gene2 . _:63083 a rdf:Statement ; up:attribution _:63051 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation3 . _:63084 a rdf:Statement ; up:attribution _:63052 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation4 . _:63085 a rdf:Statement ; up:attribution _:63053 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation6 . _:63086 a rdf:Statement ; up:attribution _:63054 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation8 . _:63087 a rdf:Statement ; up:attribution _:63055 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation9 . _:63088 a rdf:Statement ; up:attribution _:63056 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation10 . _:63089 a rdf:Statement ; up:attribution _:63057 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation11 . _:63090 a rdf:Statement ; up:attribution _:63058 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation13 . _:63091 a rdf:Statement ; up:attribution _:63059 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:963 . _:63092 a rdf:Statement ; up:attribution _:63060 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:28 . _:63093 a rdf:Statement ; up:attribution _:63061 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:718 . _:63094 a rdf:Statement ; up:attribution _:63062 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:808 . _:63095 a rdf:Statement ; up:attribution _:63063 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:32 . _:63096 a rdf:Statement ; up:attribution _:63064 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:663 . _:63097 a rdf:Statement ; up:attribution _:63065 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object GO:0004648 . _:63098 a rdf:Statement ; up:attribution _:63066 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object GO:0030170 . _:63099 a rdf:Statement ; up:attribution _:63067 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object GO:0006564 . _:63100 a rdf:Statement ; up:attribution _:63068 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object GO:0005737 . _:63101 a rdf:Statement ; up:attribution _:63069 ; rdf:subject ?case14 ; rdf:predicate up:classifiedWith ; rdf:object keyword:664 . _:63102 a rdf:Statement ; up:attribution _:63070 ; rdf:subject ?case14 ; rdf:predicate up:classifiedWith ; rdf:object GO:0008615 . _:63103 a rdf:Statement ; up:source unirule:MF_00160 ; rdf:subject ?pfs15 ; rdf:predicate up:annotation ; rdf:object ?annotation16 . _:63104 a rdf:Statement ; up:attribution _:63071 ; rdf:subject ?pfs15 ; rdf:predicate up:annotation ; rdf:object ?annotation16 . _:63105 a rdf:Statement ; up:source unirule:MF_00160 ; rdf:subject ?pfs22 ; rdf:predicate up:annotation ; rdf:object ?annotation23 . _:63106 a rdf:Statement ; up:attribution _:63072 ; rdf:subject ?pfs22 ; rdf:predicate up:annotation ; rdf:object ?annotation23 . _:63107 a rdf:Statement ; up:source unirule:MF_00160 ; rdf:subject ?pfs29 ; rdf:predicate up:annotation ; rdf:object ?annotation30 . _:63108 a rdf:Statement ; up:attribution _:63073 ; rdf:subject ?pfs29 ; rdf:predicate up:annotation ; rdf:object ?annotation30 . _:63109 a rdf:Statement ; up:source unirule:MF_00160 ; rdf:subject ?pfs36 ; rdf:predicate up:annotation ; rdf:object ?annotation37 . _:63110 a rdf:Statement ; up:attribution _:63074 ; rdf:subject ?pfs36 ; rdf:predicate up:annotation ; rdf:object ?annotation37 . _:63111 a rdf:Statement ; up:source unirule:MF_00160 ; rdf:subject ?pfs43 ; rdf:predicate up:annotation ; rdf:object ?annotation44 . _:63112 a rdf:Statement ; up:attribution _:63075 ; rdf:subject ?pfs43 ; rdf:predicate up:annotation ; rdf:object ?annotation44 . _:63113 a rdf:Statement ; up:source unirule:MF_00160 ; rdf:subject ?pfs50 ; rdf:predicate up:annotation ; rdf:object ?annotation51 . _:63114 a rdf:Statement ; up:attribution _:63076 ; rdf:subject ?pfs50 ; rdf:predicate up:annotation ; rdf:object ?annotation51 . _:63115 a rdf:Statement ; up:source unirule:MF_00160 ; rdf:subject ?pfs57 ; rdf:predicate up:annotation ; rdf:object ?annotation58 . _:63116 a rdf:Statement ; up:attribution _:63077 ; rdf:subject ?pfs57 ; rdf:predicate up:annotation ; rdf:object ?annotation58 . _:63117 a rdf:Statement ; up:source unirule:MF_00160 ; rdf:subject ?pfs64 ; rdf:predicate up:annotation ; rdf:object ?annotation65 . _:63118 a rdf:Statement ; up:attribution _:63078 ; rdf:subject ?pfs64 ; rdf:predicate up:annotation ; rdf:object ?annotation65 . _:63119 a rdf:Statement ; up:source unirule:MF_00160 ; rdf:subject ?pfs71 ; rdf:predicate up:annotation ; rdf:object ?annotation72 . _:63120 a rdf:Statement ; up:attribution _:63079 ; rdf:subject ?pfs71 ; rdf:predicate up:annotation ; rdf:object ?annotation72 . } WHERE { #baseURI: http://purl.uniprot.org/unirule/MF_00160 #Rule MF_00160 Created by:hamap on:2001-06-01 Modified by:ecastro on:2023-06-01 VALUES ?supertaxon77 {taxon:2 taxon:2157} ?this up:organism ?thisOrganism ; rdfs:seeAlso signature:MF_00160 . ?thisOrganism rdfs:subClassOf+ ?supertaxon77 . BIND(URI(CONCAT(STR(?this), '#MF_00160a0')) AS ?name0) . BIND(URI(CONCAT(STR(?this), '#MF_00160a1')) AS ?name1) . BIND(URI(CONCAT(STR(?this), '#MF_00160a3')) AS ?annotation3) . BIND(URI(CONCAT(STR(?this), '#MF_00160a4')) AS ?annotation4) . BIND(URI(CONCAT(STR(?this), '#MF_00160a6')) AS ?annotation6) . BIND(URI(CONCAT(STR(?this), '#MF_00160a8')) AS ?annotation8) . BIND(URI(CONCAT(STR(?this), '#MF_00160a9')) AS ?annotation9) . BIND(URI(CONCAT(STR(?this), '#MF_00160a10')) AS ?annotation10) . BIND(URI(CONCAT(STR(?this), '#MF_00160a11')) AS ?annotation11) . BIND(URI(CONCAT(STR(?this), '#MF_00160a13')) AS ?annotation13) . OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch82 faldo:location ?templateMotifSequenceMatchRegionP2372183 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP2372185 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP23721MF_0016078 . ?templateMotifSequenceMatchRegionP2372183 faldo:begin ?templateMotifSequenceMatchBeginP2372184 . ?templateMotifSequenceMatchBeginP2372184 faldo:position ?templateMotifSequenceMatchBeginPositionP2372179 ; faldo:reference isoform:P23721-1 . ?templateMotifSequenceProfileAlignmentOperationP2372185 edam:has_input signature:MF_00160 ; rdf:type edam:operation_0300 . ?targetMotifMatch86 faldo:location ?targetMotifMatchRegionMatch87 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0016089 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP23721MF_0016080 . ?targetMotifMatchRegionMatch87 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0016088 . ?targetMotifMatchRegionMatchBeginMF_0016088 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0016081 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_0016089 edam:has_input signature:MF_00160 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP23721MF_0016078, 1, (STRLEN(?templateMotifCigarP23721MF_0016078) - STRLEN(REPLACE(?templateMotifCigarP23721MF_0016078, CONCAT('^(?:-*[^-]){', STR(((76 - ?templateMotifSequenceMatchBeginPositionP2372179) + 1)), '}'), '')))), '[a-z]', '')) AS ?step190) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP23721MF_0016080, 1, (STRLEN(?targetMotifMatchCigarP23721MF_0016080) - STRLEN(REPLACE(?targetMotifMatchCigarP23721MF_0016080, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step190), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP23721MF_0016080, 1, (STRLEN(?targetMotifMatchCigarP23721MF_0016080) - STRLEN(REPLACE(?targetMotifMatchCigarP23721MF_0016080, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step190), '}'), '')))), '[^-]', ''))) AS ?step291) . BIND(((?step291 + ?targetMotifMatchRegionMatchBeginPositionMF_0016081) - 1) AS ?thisPositionOn20) . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP23721MF_0016078, 1, (STRLEN(?templateMotifCigarP23721MF_0016078) - STRLEN(REPLACE(?templateMotifCigarP23721MF_0016078, CONCAT('^(?:-*[^-]){', STR(((77 - ?templateMotifSequenceMatchBeginPositionP2372179) + 1)), '}'), '')))), '[a-z]', '')) AS ?step192) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP23721MF_0016080, 1, (STRLEN(?targetMotifMatchCigarP23721MF_0016080) - STRLEN(REPLACE(?targetMotifMatchCigarP23721MF_0016080, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step192), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP23721MF_0016080, 1, (STRLEN(?targetMotifMatchCigarP23721MF_0016080) - STRLEN(REPLACE(?targetMotifMatchCigarP23721MF_0016080, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step192), '}'), '')))), '[^-]', ''))) AS ?step293) . BIND(((?step293 + ?targetMotifMatchRegionMatchBeginPositionMF_0016081) - 1) AS ?thisPositionOn21) . BIND(?this AS ?pfs1t94) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn20))) AS ?pfsb17) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn21))) AS ?pfse18) . FILTER (REGEX('[GA][RST]', SUBSTR(?thisSequenceValue, ?thisPositionOn20, (?thisPositionOn21 - ?thisPositionOn20)))) . BIND(URI(CONCAT(STR(?this), '#MF_00160a16')) AS ?annotation16) . BIND(?this AS ?pfs15) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch99 faldo:location ?templateMotifSequenceMatchRegionP23721100 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP23721102 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP23721MF_0016095 . ?templateMotifSequenceMatchRegionP23721100 faldo:begin ?templateMotifSequenceMatchBeginP23721101 . ?templateMotifSequenceMatchBeginP23721101 faldo:position ?templateMotifSequenceMatchBeginPositionP2372196 ; faldo:reference isoform:P23721-1 . ?templateMotifSequenceProfileAlignmentOperationP23721102 edam:has_input signature:MF_00160 ; rdf:type edam:operation_0300 . ?targetMotifMatch103 faldo:location ?targetMotifMatchRegionMatch104 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00160106 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP23721MF_0016097 . ?targetMotifMatchRegionMatch104 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00160105 . ?targetMotifMatchRegionMatchBeginMF_00160105 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0016098 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_00160106 edam:has_input signature:MF_00160 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP23721MF_0016095, 1, (STRLEN(?templateMotifCigarP23721MF_0016095) - STRLEN(REPLACE(?templateMotifCigarP23721MF_0016095, CONCAT('^(?:-*[^-]){', STR(((239 - ?templateMotifSequenceMatchBeginPositionP2372196) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1107) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP23721MF_0016097, 1, (STRLEN(?targetMotifMatchCigarP23721MF_0016097) - STRLEN(REPLACE(?targetMotifMatchCigarP23721MF_0016097, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1107), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP23721MF_0016097, 1, (STRLEN(?targetMotifMatchCigarP23721MF_0016097) - STRLEN(REPLACE(?targetMotifMatchCigarP23721MF_0016097, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1107), '}'), '')))), '[^-]', ''))) AS ?step2108) . BIND(((?step2108 + ?targetMotifMatchRegionMatchBeginPositionMF_0016098) - 1) AS ?thisPositionOn27) . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP23721MF_0016095, 1, (STRLEN(?templateMotifCigarP23721MF_0016095) - STRLEN(REPLACE(?templateMotifCigarP23721MF_0016095, CONCAT('^(?:-*[^-]){', STR(((240 - ?templateMotifSequenceMatchBeginPositionP2372196) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1109) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP23721MF_0016097, 1, (STRLEN(?targetMotifMatchCigarP23721MF_0016097) - STRLEN(REPLACE(?targetMotifMatchCigarP23721MF_0016097, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1109), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP23721MF_0016097, 1, (STRLEN(?targetMotifMatchCigarP23721MF_0016097) - STRLEN(REPLACE(?targetMotifMatchCigarP23721MF_0016097, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1109), '}'), '')))), '[^-]', ''))) AS ?step2110) . BIND(((?step2110 + ?targetMotifMatchRegionMatchBeginPositionMF_0016098) - 1) AS ?thisPositionOn28) . BIND(?this AS ?pfs1t111) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn27))) AS ?pfsb24) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn28))) AS ?pfse25) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn27, (?thisPositionOn28 - ?thisPositionOn27)) = 'NT')) . BIND(URI(CONCAT(STR(?this), '#MF_00160a23')) AS ?annotation23) . BIND(?this AS ?pfs22) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch116 faldo:location ?templateMotifSequenceMatchRegionP23721117 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP23721119 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP23721MF_00160112 . ?templateMotifSequenceMatchRegionP23721117 faldo:begin ?templateMotifSequenceMatchBeginP23721118 . ?templateMotifSequenceMatchBeginP23721118 faldo:position ?templateMotifSequenceMatchBeginPositionP23721113 ; faldo:reference isoform:P23721-1 . ?templateMotifSequenceProfileAlignmentOperationP23721119 edam:has_input signature:MF_00160 ; rdf:type edam:operation_0300 . ?targetMotifMatch120 faldo:location ?targetMotifMatchRegionMatch121 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00160123 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP23721MF_00160114 . ?targetMotifMatchRegionMatch121 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00160122 . ?targetMotifMatchRegionMatchBeginMF_00160122 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00160115 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_00160123 edam:has_input signature:MF_00160 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP23721MF_00160112, 1, (STRLEN(?templateMotifCigarP23721MF_00160112) - STRLEN(REPLACE(?templateMotifCigarP23721MF_00160112, CONCAT('^(?:-*[^-]){', STR(((9 - ?templateMotifSequenceMatchBeginPositionP23721113) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1124) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP23721MF_00160114, 1, (STRLEN(?targetMotifMatchCigarP23721MF_00160114) - STRLEN(REPLACE(?targetMotifMatchCigarP23721MF_00160114, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1124), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP23721MF_00160114, 1, (STRLEN(?targetMotifMatchCigarP23721MF_00160114) - STRLEN(REPLACE(?targetMotifMatchCigarP23721MF_00160114, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1124), '}'), '')))), '[^-]', ''))) AS ?step2125) . BIND(((?step2125 + ?targetMotifMatchRegionMatchBeginPositionMF_00160115) - 1) AS ?thisPositionOn34) . BIND(?thisPositionOn34 AS ?thisPositionOn35) . BIND(?this AS ?pfs1t126) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn34))) AS ?pfsb31) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn35))) AS ?pfse32) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn34, 1) = 'S')) . BIND(URI(CONCAT(STR(?this), '#MF_00160a30')) AS ?annotation30) . BIND(?this AS ?pfs29) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch131 faldo:location ?templateMotifSequenceMatchRegionP23721132 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP23721134 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP23721MF_00160127 . ?templateMotifSequenceMatchRegionP23721132 faldo:begin ?templateMotifSequenceMatchBeginP23721133 . ?templateMotifSequenceMatchBeginP23721133 faldo:position ?templateMotifSequenceMatchBeginPositionP23721128 ; faldo:reference isoform:P23721-1 . ?templateMotifSequenceProfileAlignmentOperationP23721134 edam:has_input signature:MF_00160 ; rdf:type edam:operation_0300 . ?targetMotifMatch135 faldo:location ?targetMotifMatchRegionMatch136 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00160138 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP23721MF_00160129 . ?targetMotifMatchRegionMatch136 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00160137 . ?targetMotifMatchRegionMatchBeginMF_00160137 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00160130 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_00160138 edam:has_input signature:MF_00160 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP23721MF_00160127, 1, (STRLEN(?templateMotifCigarP23721MF_00160127) - STRLEN(REPLACE(?templateMotifCigarP23721MF_00160127, CONCAT('^(?:-*[^-]){', STR(((42 - ?templateMotifSequenceMatchBeginPositionP23721128) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1139) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP23721MF_00160129, 1, (STRLEN(?targetMotifMatchCigarP23721MF_00160129) - STRLEN(REPLACE(?targetMotifMatchCigarP23721MF_00160129, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1139), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP23721MF_00160129, 1, (STRLEN(?targetMotifMatchCigarP23721MF_00160129) - STRLEN(REPLACE(?targetMotifMatchCigarP23721MF_00160129, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1139), '}'), '')))), '[^-]', ''))) AS ?step2140) . BIND(((?step2140 + ?targetMotifMatchRegionMatchBeginPositionMF_00160130) - 1) AS ?thisPositionOn41) . BIND(?thisPositionOn41 AS ?thisPositionOn42) . BIND(?this AS ?pfs1t141) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn41))) AS ?pfsb38) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn42))) AS ?pfse39) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn41, 1) = 'R')) . BIND(URI(CONCAT(STR(?this), '#MF_00160a37')) AS ?annotation37) . BIND(?this AS ?pfs36) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch146 faldo:location ?templateMotifSequenceMatchRegionP23721147 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP23721149 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP23721MF_00160142 . ?templateMotifSequenceMatchRegionP23721147 faldo:begin ?templateMotifSequenceMatchBeginP23721148 . ?templateMotifSequenceMatchBeginP23721148 faldo:position ?templateMotifSequenceMatchBeginPositionP23721143 ; faldo:reference isoform:P23721-1 . ?templateMotifSequenceProfileAlignmentOperationP23721149 edam:has_input signature:MF_00160 ; rdf:type edam:operation_0300 . ?targetMotifMatch150 faldo:location ?targetMotifMatchRegionMatch151 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00160153 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP23721MF_00160144 . ?targetMotifMatchRegionMatch151 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00160152 . ?targetMotifMatchRegionMatchBeginMF_00160152 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00160145 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_00160153 edam:has_input signature:MF_00160 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP23721MF_00160142, 1, (STRLEN(?templateMotifCigarP23721MF_00160142) - STRLEN(REPLACE(?templateMotifCigarP23721MF_00160142, CONCAT('^(?:-*[^-]){', STR(((102 - ?templateMotifSequenceMatchBeginPositionP23721143) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1154) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP23721MF_00160144, 1, (STRLEN(?targetMotifMatchCigarP23721MF_00160144) - STRLEN(REPLACE(?targetMotifMatchCigarP23721MF_00160144, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1154), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP23721MF_00160144, 1, (STRLEN(?targetMotifMatchCigarP23721MF_00160144) - STRLEN(REPLACE(?targetMotifMatchCigarP23721MF_00160144, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1154), '}'), '')))), '[^-]', ''))) AS ?step2155) . BIND(((?step2155 + ?targetMotifMatchRegionMatchBeginPositionMF_00160145) - 1) AS ?thisPositionOn48) . BIND(?thisPositionOn48 AS ?thisPositionOn49) . BIND(?this AS ?pfs1t156) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn48))) AS ?pfsb45) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn49))) AS ?pfse46) . FILTER (REGEX('[WF]', SUBSTR(?thisSequenceValue, ?thisPositionOn48, 1))) . BIND(URI(CONCAT(STR(?this), '#MF_00160a44')) AS ?annotation44) . BIND(?this AS ?pfs43) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch161 faldo:location ?templateMotifSequenceMatchRegionP23721162 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP23721164 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP23721MF_00160157 . ?templateMotifSequenceMatchRegionP23721162 faldo:begin ?templateMotifSequenceMatchBeginP23721163 . ?templateMotifSequenceMatchBeginP23721163 faldo:position ?templateMotifSequenceMatchBeginPositionP23721158 ; faldo:reference isoform:P23721-1 . ?templateMotifSequenceProfileAlignmentOperationP23721164 edam:has_input signature:MF_00160 ; rdf:type edam:operation_0300 . ?targetMotifMatch165 faldo:location ?targetMotifMatchRegionMatch166 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00160168 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP23721MF_00160159 . ?targetMotifMatchRegionMatch166 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00160167 . ?targetMotifMatchRegionMatchBeginMF_00160167 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00160160 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_00160168 edam:has_input signature:MF_00160 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP23721MF_00160157, 1, (STRLEN(?templateMotifCigarP23721MF_00160157) - STRLEN(REPLACE(?templateMotifCigarP23721MF_00160157, CONCAT('^(?:-*[^-]){', STR(((153 - ?templateMotifSequenceMatchBeginPositionP23721158) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1169) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP23721MF_00160159, 1, (STRLEN(?targetMotifMatchCigarP23721MF_00160159) - STRLEN(REPLACE(?targetMotifMatchCigarP23721MF_00160159, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1169), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP23721MF_00160159, 1, (STRLEN(?targetMotifMatchCigarP23721MF_00160159) - STRLEN(REPLACE(?targetMotifMatchCigarP23721MF_00160159, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1169), '}'), '')))), '[^-]', ''))) AS ?step2170) . BIND(((?step2170 + ?targetMotifMatchRegionMatchBeginPositionMF_00160160) - 1) AS ?thisPositionOn55) . BIND(?thisPositionOn55 AS ?thisPositionOn56) . BIND(?this AS ?pfs1t171) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn55))) AS ?pfsb52) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn56))) AS ?pfse53) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn55, 1) = 'T')) . BIND(URI(CONCAT(STR(?this), '#MF_00160a51')) AS ?annotation51) . BIND(?this AS ?pfs50) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch176 faldo:location ?templateMotifSequenceMatchRegionP23721177 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP23721179 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP23721MF_00160172 . ?templateMotifSequenceMatchRegionP23721177 faldo:begin ?templateMotifSequenceMatchBeginP23721178 . ?templateMotifSequenceMatchBeginP23721178 faldo:position ?templateMotifSequenceMatchBeginPositionP23721173 ; faldo:reference isoform:P23721-1 . ?templateMotifSequenceProfileAlignmentOperationP23721179 edam:has_input signature:MF_00160 ; rdf:type edam:operation_0300 . ?targetMotifMatch180 faldo:location ?targetMotifMatchRegionMatch181 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00160183 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP23721MF_00160174 . ?targetMotifMatchRegionMatch181 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00160182 . ?targetMotifMatchRegionMatchBeginMF_00160182 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00160175 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_00160183 edam:has_input signature:MF_00160 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP23721MF_00160172, 1, (STRLEN(?templateMotifCigarP23721MF_00160172) - STRLEN(REPLACE(?templateMotifCigarP23721MF_00160172, CONCAT('^(?:-*[^-]){', STR(((174 - ?templateMotifSequenceMatchBeginPositionP23721173) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1184) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP23721MF_00160174, 1, (STRLEN(?targetMotifMatchCigarP23721MF_00160174) - STRLEN(REPLACE(?targetMotifMatchCigarP23721MF_00160174, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1184), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP23721MF_00160174, 1, (STRLEN(?targetMotifMatchCigarP23721MF_00160174) - STRLEN(REPLACE(?targetMotifMatchCigarP23721MF_00160174, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1184), '}'), '')))), '[^-]', ''))) AS ?step2185) . BIND(((?step2185 + ?targetMotifMatchRegionMatchBeginPositionMF_00160175) - 1) AS ?thisPositionOn62) . BIND(?thisPositionOn62 AS ?thisPositionOn63) . BIND(?this AS ?pfs1t186) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn62))) AS ?pfsb59) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn63))) AS ?pfse60) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn62, 1) = 'D')) . BIND(URI(CONCAT(STR(?this), '#MF_00160a58')) AS ?annotation58) . BIND(?this AS ?pfs57) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch191 faldo:location ?templateMotifSequenceMatchRegionP23721192 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP23721194 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP23721MF_00160187 . ?templateMotifSequenceMatchRegionP23721192 faldo:begin ?templateMotifSequenceMatchBeginP23721193 . ?templateMotifSequenceMatchBeginP23721193 faldo:position ?templateMotifSequenceMatchBeginPositionP23721188 ; faldo:reference isoform:P23721-1 . ?templateMotifSequenceProfileAlignmentOperationP23721194 edam:has_input signature:MF_00160 ; rdf:type edam:operation_0300 . ?targetMotifMatch195 faldo:location ?targetMotifMatchRegionMatch196 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00160198 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP23721MF_00160189 . ?targetMotifMatchRegionMatch196 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00160197 . ?targetMotifMatchRegionMatchBeginMF_00160197 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00160190 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_00160198 edam:has_input signature:MF_00160 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP23721MF_00160187, 1, (STRLEN(?templateMotifCigarP23721MF_00160187) - STRLEN(REPLACE(?templateMotifCigarP23721MF_00160187, CONCAT('^(?:-*[^-]){', STR(((197 - ?templateMotifSequenceMatchBeginPositionP23721188) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1199) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP23721MF_00160189, 1, (STRLEN(?targetMotifMatchCigarP23721MF_00160189) - STRLEN(REPLACE(?targetMotifMatchCigarP23721MF_00160189, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1199), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP23721MF_00160189, 1, (STRLEN(?targetMotifMatchCigarP23721MF_00160189) - STRLEN(REPLACE(?targetMotifMatchCigarP23721MF_00160189, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1199), '}'), '')))), '[^-]', ''))) AS ?step2200) . BIND(((?step2200 + ?targetMotifMatchRegionMatchBeginPositionMF_00160190) - 1) AS ?thisPositionOn69) . BIND(?thisPositionOn69 AS ?thisPositionOn70) . BIND(?this AS ?pfs1t201) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn69))) AS ?pfsb66) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn70))) AS ?pfse67) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn69, 1) = 'Q')) . BIND(URI(CONCAT(STR(?this), '#MF_00160a65')) AS ?annotation65) . BIND(?this AS ?pfs64) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch206 faldo:location ?templateMotifSequenceMatchRegionP23721207 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP23721209 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP23721MF_00160202 . ?templateMotifSequenceMatchRegionP23721207 faldo:begin ?templateMotifSequenceMatchBeginP23721208 . ?templateMotifSequenceMatchBeginP23721208 faldo:position ?templateMotifSequenceMatchBeginPositionP23721203 ; faldo:reference isoform:P23721-1 . ?templateMotifSequenceProfileAlignmentOperationP23721209 edam:has_input signature:MF_00160 ; rdf:type edam:operation_0300 . ?targetMotifMatch210 faldo:location ?targetMotifMatchRegionMatch211 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00160213 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP23721MF_00160204 . ?targetMotifMatchRegionMatch211 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00160212 . ?targetMotifMatchRegionMatchBeginMF_00160212 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00160205 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_00160213 edam:has_input signature:MF_00160 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP23721MF_00160202, 1, (STRLEN(?templateMotifCigarP23721MF_00160202) - STRLEN(REPLACE(?templateMotifCigarP23721MF_00160202, CONCAT('^(?:-*[^-]){', STR(((198 - ?templateMotifSequenceMatchBeginPositionP23721203) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1214) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP23721MF_00160204, 1, (STRLEN(?targetMotifMatchCigarP23721MF_00160204) - STRLEN(REPLACE(?targetMotifMatchCigarP23721MF_00160204, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1214), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP23721MF_00160204, 1, (STRLEN(?targetMotifMatchCigarP23721MF_00160204) - STRLEN(REPLACE(?targetMotifMatchCigarP23721MF_00160204, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1214), '}'), '')))), '[^-]', ''))) AS ?step2215) . BIND(((?step2215 + ?targetMotifMatchRegionMatchBeginPositionMF_00160205) - 1) AS ?thisPositionOn75) . BIND(?thisPositionOn75 AS ?thisPositionOn76) . BIND(?this AS ?pfs1t216) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn75))) AS ?pfsb73) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn76))) AS ?pfse74) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn75, 1) = 'K')) . BIND(URI(CONCAT(STR(?this), '#MF_00160a72')) AS ?annotation72) . BIND(?this AS ?pfs71) . } OPTIONAL { ?this a up:Protein . ?this up:organism ?thisOrganism . FILTER (! (EXISTS { ?thisOrganism rdfs:subClassOf+ taxon:1239 . })) . BIND(?this AS ?case14) . } }