CONSTRUCT { _:78337 up:source unirule:MF_00193 . _:78338 up:source unirule:MF_00193 . _:78339 up:source unirule:MF_00193 . _:78340 up:source unirule:MF_00193 . _:78341 up:source unirule:MF_00193 . _:78342 up:source unirule:MF_00193 . _:78343 up:source unirule:MF_00193 . _:78344 up:source unirule:MF_00193 . _:78345 up:source unirule:MF_00193 . _:78346 up:source unirule:MF_00193 . _:78347 up:source unirule:MF_00193 . _:78348 up:source unirule:MF_00193 . _:78349 up:source unirule:MF_00193 . _:78350 up:source unirule:MF_00193 . _:78351 up:source unirule:MF_00193 . _:78352 up:source unirule:MF_00193 . _:78353 up:source unirule:MF_00193 . _:78354 up:source unirule:MF_00193 . _:78355 up:source unirule:MF_00193 . _:78356 up:source unirule:MF_00193 . _:78357 up:source unirule:MF_00193 . _:78358 up:source unirule:MF_00193 . _:78359 up:source unirule:MF_00193 . _:78360 up:source unirule:MF_00193 . _:78361 up:source unirule:MF_00193 . _:78362 up:source unirule:MF_00193 . ?this up:annotation ?annotation2 , ?annotation3 , ?annotation5 , ?annotation6 , ?annotation7 ; up:classifiedWith GO:0005524 , GO:0008795 , GO:0009435 , keyword:436 , keyword:460 , keyword:479 , keyword:520 , keyword:547 , keyword:67 ; up:recommendedName ?name0 . ?name0 up:ecName '6.3.1.5' ; up:fullName 'NH(3)-dependent NAD(+) synthetase' ; rdf:type up:Structured_Name . ?gene1 skos:prefLabel 'nadE' . ?annotation2 a up:Function_Annotation ; rdfs:comment 'Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses ammonia as a nitrogen source.' . ?annotation3 up:activity ?activity4 ; rdf:type up:Catalytic_Activity_Annotation . ?activity4 up:catalyticActivity <http://rdf.rhea-db.org/21188>; up:enzymeClass <http://purl.uniprot.org/enzyme/6.3.1.5>. ?annotation5 a up:Pathway_Annotation ; rdfs:comment 'Cofactor biosynthesis; NAD(+) biosynthesis; NAD(+) from deamido-NAD(+) (ammonia route): step 1/1.' . ?annotation6 a up:Subunit_Annotation ; rdfs:comment 'Homodimer.' . ?annotation7 a up:Similarity_Annotation ; rdfs:comment 'Belongs to the NAD synthetase family.' . ?pfs8 up:annotation ?annotation9 . ?annotation9 faldo:begin ?pfsb10 ; faldo:end ?pfse11 ; up:ligand ?ligand12 ; rdf:type up:Binding_Site_Annotation . ?pfsb10 faldo:position ?thisPositionOn13 ; rdf:type faldo:ExactPosition . ?pfse11 faldo:position ?thisPositionOn14 ; rdf:type faldo:ExactPosition . ?ligand12 rdfs:subClassOf chebi:30616 . ?pfs15 up:annotation ?annotation16 . ?annotation16 faldo:begin ?pfsb17 ; faldo:end ?pfse18 ; up:ligand ?ligand19 ; rdf:type up:Binding_Site_Annotation ; rdfs:comment 'in other chain' . ?pfsb17 faldo:position ?thisPositionOn20 ; rdf:type faldo:ExactPosition . ?pfse18 faldo:position ?thisPositionOn21 ; rdf:type faldo:ExactPosition . ?ligand19 rdfs:subClassOf chebi:58437 . ?pfs22 up:annotation ?annotation23 . ?annotation23 faldo:begin ?pfsb24 ; faldo:end ?pfse25 ; up:ligand ?ligand26 ; rdf:type up:Binding_Site_Annotation . ?pfsb24 faldo:position ?thisPositionOn27 ; rdf:type faldo:ExactPosition . ?pfse25 faldo:position ?thisPositionOn28 ; rdf:type faldo:ExactPosition . ?ligand26 rdfs:subClassOf chebi:18420 . ?pfs29 up:annotation ?annotation30 . ?annotation30 faldo:begin ?pfsb31 ; faldo:end ?pfse32 ; up:ligand ?ligand33 ; rdf:type up:Binding_Site_Annotation . ?pfsb31 faldo:position ?thisPositionOn34 ; rdf:type faldo:ExactPosition . ?pfse32 faldo:position ?thisPositionOn35 ; rdf:type faldo:ExactPosition . ?ligand33 rdfs:subClassOf chebi:18420 . ?pfs36 up:annotation ?annotation37 . ?annotation37 faldo:begin ?pfsb38 ; faldo:end ?pfse39 ; up:ligand ?ligand40 ; rdf:type up:Binding_Site_Annotation ; rdfs:comment 'in other chain' . ?pfsb38 faldo:position ?thisPositionOn41 ; rdf:type faldo:ExactPosition . ?pfse39 faldo:position ?thisPositionOn42 ; rdf:type faldo:ExactPosition . ?ligand40 rdfs:subClassOf chebi:58437 . ?pfs43 up:annotation ?annotation44 . ?annotation44 faldo:begin ?pfsb45 ; faldo:end ?pfse46 ; up:ligand ?ligand47 ; rdf:type up:Binding_Site_Annotation . ?pfsb45 faldo:position ?thisPositionOn48 ; rdf:type faldo:ExactPosition . ?pfse46 faldo:position ?thisPositionOn49 ; rdf:type faldo:ExactPosition . ?ligand47 rdfs:subClassOf chebi:30616 . ?pfs50 up:annotation ?annotation51 . ?annotation51 faldo:begin ?pfsb52 ; faldo:end ?pfse53 ; up:ligand ?ligand54 ; rdf:type up:Binding_Site_Annotation ; rdfs:comment 'in other chain' . ?pfsb52 faldo:position ?thisPositionOn55 ; rdf:type faldo:ExactPosition . ?pfse53 faldo:position ?thisPositionOn56 ; rdf:type faldo:ExactPosition . ?ligand54 rdfs:subClassOf chebi:58437 . ?pfs57 up:annotation ?annotation58 . ?annotation58 faldo:begin ?pfsb59 ; faldo:end ?pfse60 ; up:ligand ?ligand61 ; rdf:type up:Binding_Site_Annotation . ?pfsb59 faldo:position ?thisPositionOn62 ; rdf:type faldo:ExactPosition . ?pfse60 faldo:position ?thisPositionOn63 ; rdf:type faldo:ExactPosition . ?ligand61 rdfs:subClassOf chebi:58437 . ?pfs64 up:annotation ?annotation65 . ?annotation65 faldo:begin ?pfsb66 ; faldo:end ?pfse67 ; up:ligand ?ligand68 ; rdf:type up:Binding_Site_Annotation . ?pfsb66 faldo:position ?thisPositionOn69 ; rdf:type faldo:ExactPosition . ?pfse67 faldo:position ?thisPositionOn70 ; rdf:type faldo:ExactPosition . ?ligand68 rdfs:subClassOf chebi:30616 . ?pfs71 up:annotation ?annotation72 . ?annotation72 faldo:begin ?pfsb73 ; faldo:end ?pfse74 ; up:ligand ?ligand75 ; rdf:type up:Binding_Site_Annotation . ?pfsb73 faldo:position ?thisPositionOn76 ; rdf:type faldo:ExactPosition . ?pfse74 faldo:position ?thisPositionOn77 ; rdf:type faldo:ExactPosition . ?ligand75 rdfs:subClassOf chebi:30616 . _:78363 a rdf:Statement ; up:attribution _:78337 ; rdf:subject ?this ; rdf:predicate up:recommendedName ; rdf:object ?name0 . _:78364 a rdf:Statement ; up:attribution _:78338 ; rdf:subject ?gene1 ; rdf:predicate up:encodedBy ; rdf:object ?gene1 . _:78365 a rdf:Statement ; up:attribution _:78339 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation2 . _:78366 a rdf:Statement ; up:attribution _:78340 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation3 . _:78367 a rdf:Statement ; up:attribution _:78341 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation5 . _:78368 a rdf:Statement ; up:attribution _:78342 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation6 . _:78369 a rdf:Statement ; up:attribution _:78343 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation7 . _:78370 a rdf:Statement ; up:attribution _:78344 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:67 . _:78371 a rdf:Statement ; up:attribution _:78345 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:436 . _:78372 a rdf:Statement ; up:attribution _:78346 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:460 . _:78373 a rdf:Statement ; up:attribution _:78347 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:479 . _:78374 a rdf:Statement ; up:attribution _:78348 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:520 . _:78375 a rdf:Statement ; up:attribution _:78349 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:547 . _:78376 a rdf:Statement ; up:attribution _:78350 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object GO:0005524 . _:78377 a rdf:Statement ; up:attribution _:78351 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object GO:0008795 . _:78378 a rdf:Statement ; up:attribution _:78352 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object GO:0009435 . _:78379 a rdf:Statement ; up:source unirule:MF_00193 ; rdf:subject ?pfs8 ; rdf:predicate up:annotation ; rdf:object ?annotation9 . _:78380 a rdf:Statement ; up:attribution _:78353 ; rdf:subject ?pfs8 ; rdf:predicate up:annotation ; rdf:object ?annotation9 . _:78381 a rdf:Statement ; up:source unirule:MF_00193 ; rdf:subject ?pfs15 ; rdf:predicate up:annotation ; rdf:object ?annotation16 . _:78382 a rdf:Statement ; up:attribution _:78354 ; rdf:subject ?pfs15 ; rdf:predicate up:annotation ; rdf:object ?annotation16 . _:78383 a rdf:Statement ; up:source unirule:MF_00193 ; rdf:subject ?pfs22 ; rdf:predicate up:annotation ; rdf:object ?annotation23 . _:78384 a rdf:Statement ; up:attribution _:78355 ; rdf:subject ?pfs22 ; rdf:predicate up:annotation ; rdf:object ?annotation23 . _:78385 a rdf:Statement ; up:source unirule:MF_00193 ; rdf:subject ?pfs29 ; rdf:predicate up:annotation ; rdf:object ?annotation30 . _:78386 a rdf:Statement ; up:attribution _:78356 ; rdf:subject ?pfs29 ; rdf:predicate up:annotation ; rdf:object ?annotation30 . _:78387 a rdf:Statement ; up:source unirule:MF_00193 ; rdf:subject ?pfs36 ; rdf:predicate up:annotation ; rdf:object ?annotation37 . _:78388 a rdf:Statement ; up:attribution _:78357 ; rdf:subject ?pfs36 ; rdf:predicate up:annotation ; rdf:object ?annotation37 . _:78389 a rdf:Statement ; up:source unirule:MF_00193 ; rdf:subject ?pfs43 ; rdf:predicate up:annotation ; rdf:object ?annotation44 . _:78390 a rdf:Statement ; up:attribution _:78358 ; rdf:subject ?pfs43 ; rdf:predicate up:annotation ; rdf:object ?annotation44 . _:78391 a rdf:Statement ; up:source unirule:MF_00193 ; rdf:subject ?pfs50 ; rdf:predicate up:annotation ; rdf:object ?annotation51 . _:78392 a rdf:Statement ; up:attribution _:78359 ; rdf:subject ?pfs50 ; rdf:predicate up:annotation ; rdf:object ?annotation51 . _:78393 a rdf:Statement ; up:source unirule:MF_00193 ; rdf:subject ?pfs57 ; rdf:predicate up:annotation ; rdf:object ?annotation58 . _:78394 a rdf:Statement ; up:attribution _:78360 ; rdf:subject ?pfs57 ; rdf:predicate up:annotation ; rdf:object ?annotation58 . _:78395 a rdf:Statement ; up:source unirule:MF_00193 ; rdf:subject ?pfs64 ; rdf:predicate up:annotation ; rdf:object ?annotation65 . _:78396 a rdf:Statement ; up:attribution _:78361 ; rdf:subject ?pfs64 ; rdf:predicate up:annotation ; rdf:object ?annotation65 . _:78397 a rdf:Statement ; up:source unirule:MF_00193 ; rdf:subject ?pfs71 ; rdf:predicate up:annotation ; rdf:object ?annotation72 . _:78398 a rdf:Statement ; up:attribution _:78362 ; rdf:subject ?pfs71 ; rdf:predicate up:annotation ; rdf:object ?annotation72 . } WHERE { #baseURI: http://purl.uniprot.org/unirule/MF_00193 #Rule MF_00193 Created by:hamap on:2001-06-01 Modified by:ecastro on:2023-06-01 VALUES ?supertaxon78 {taxon:2 taxon:2157} ?this up:organism ?thisOrganism ; rdfs:seeAlso signature:MF_00193 . ?thisOrganism rdfs:subClassOf+ ?supertaxon78 . BIND(URI(CONCAT(STR(?this), '#MF_00193a0')) AS ?name0) . BIND(URI(CONCAT(STR(?this), '#MF_00193a2')) AS ?annotation2) . BIND(URI(CONCAT(STR(?this), '#MF_00193a3')) AS ?annotation3) . BIND(URI(CONCAT(STR(?this), '#MF_00193a5')) AS ?annotation5) . BIND(URI(CONCAT(STR(?this), '#MF_00193a6')) AS ?annotation6) . BIND(URI(CONCAT(STR(?this), '#MF_00193a7')) AS ?annotation7) . OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch83 faldo:location ?templateMotifSequenceMatchRegionP0816484 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0816486 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP08164MF_0019379 . ?templateMotifSequenceMatchRegionP0816484 faldo:begin ?templateMotifSequenceMatchBeginP0816485 . ?templateMotifSequenceMatchBeginP0816485 faldo:position ?templateMotifSequenceMatchBeginPositionP0816480 ; faldo:reference isoform:P08164-1 . ?templateMotifSequenceProfileAlignmentOperationP0816486 edam:has_input signature:MF_00193 ; rdf:type edam:operation_0300 . ?targetMotifMatch87 faldo:location ?targetMotifMatchRegionMatch88 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0019390 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP08164MF_0019381 . ?targetMotifMatchRegionMatch88 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0019389 . ?targetMotifMatchRegionMatchBeginMF_0019389 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0019382 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_0019390 edam:has_input signature:MF_00193 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP08164MF_0019379, 1, (STRLEN(?templateMotifCigarP08164MF_0019379) - STRLEN(REPLACE(?templateMotifCigarP08164MF_0019379, CONCAT('^(?:-*[^-]){', STR(((45 - ?templateMotifSequenceMatchBeginPositionP0816480) + 1)), '}'), '')))), '[a-z]', '')) AS ?step191) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP08164MF_0019381, 1, (STRLEN(?targetMotifMatchCigarP08164MF_0019381) - STRLEN(REPLACE(?targetMotifMatchCigarP08164MF_0019381, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step191), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP08164MF_0019381, 1, (STRLEN(?targetMotifMatchCigarP08164MF_0019381) - STRLEN(REPLACE(?targetMotifMatchCigarP08164MF_0019381, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step191), '}'), '')))), '[^-]', ''))) AS ?step292) . BIND(((?step292 + ?targetMotifMatchRegionMatchBeginPositionMF_0019382) - 1) AS ?thisPositionOn13) . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP08164MF_0019379, 1, (STRLEN(?templateMotifCigarP08164MF_0019379) - STRLEN(REPLACE(?templateMotifCigarP08164MF_0019379, CONCAT('^(?:-*[^-]){', STR(((52 - ?templateMotifSequenceMatchBeginPositionP0816480) + 1)), '}'), '')))), '[a-z]', '')) AS ?step193) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP08164MF_0019381, 1, (STRLEN(?targetMotifMatchCigarP08164MF_0019381) - STRLEN(REPLACE(?targetMotifMatchCigarP08164MF_0019381, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step193), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP08164MF_0019381, 1, (STRLEN(?targetMotifMatchCigarP08164MF_0019381) - STRLEN(REPLACE(?targetMotifMatchCigarP08164MF_0019381, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step193), '}'), '')))), '[^-]', ''))) AS ?step294) . BIND(((?step294 + ?targetMotifMatchRegionMatchBeginPositionMF_0019382) - 1) AS ?thisPositionOn14) . BIND(?this AS ?pfs1t95) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn13))) AS ?pfsb10) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn14))) AS ?pfse11) . FILTER (REGEX('[GA][ILVM]SGG[ARNDCQEGHILKMFPSTWYVBZJUOX]DS', SUBSTR(?thisSequenceValue, ?thisPositionOn13, (?thisPositionOn14 - ?thisPositionOn13)))) . BIND(URI(CONCAT(STR(?this), '#MF_00193a9')) AS ?annotation9) . BIND(?this AS ?pfs8) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch100 faldo:location ?templateMotifSequenceMatchRegionP08164101 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP08164103 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP08164MF_0019396 . ?templateMotifSequenceMatchRegionP08164101 faldo:begin ?templateMotifSequenceMatchBeginP08164102 . ?templateMotifSequenceMatchBeginP08164102 faldo:position ?templateMotifSequenceMatchBeginPositionP0816497 ; faldo:reference isoform:P08164-1 . ?templateMotifSequenceProfileAlignmentOperationP08164103 edam:has_input signature:MF_00193 ; rdf:type edam:operation_0300 . ?targetMotifMatch104 faldo:location ?targetMotifMatchRegionMatch105 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00193107 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP08164MF_0019398 . ?targetMotifMatchRegionMatch105 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00193106 . ?targetMotifMatchRegionMatchBeginMF_00193106 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0019399 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_00193107 edam:has_input signature:MF_00193 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP08164MF_0019396, 1, (STRLEN(?templateMotifCigarP08164MF_0019396) - STRLEN(REPLACE(?templateMotifCigarP08164MF_0019396, CONCAT('^(?:-*[^-]){', STR(((258 - ?templateMotifSequenceMatchBeginPositionP0816497) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1108) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP08164MF_0019398, 1, (STRLEN(?targetMotifMatchCigarP08164MF_0019398) - STRLEN(REPLACE(?targetMotifMatchCigarP08164MF_0019398, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1108), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP08164MF_0019398, 1, (STRLEN(?targetMotifMatchCigarP08164MF_0019398) - STRLEN(REPLACE(?targetMotifMatchCigarP08164MF_0019398, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1108), '}'), '')))), '[^-]', ''))) AS ?step2109) . BIND(((?step2109 + ?targetMotifMatchRegionMatchBeginPositionMF_0019399) - 1) AS ?thisPositionOn20) . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP08164MF_0019396, 1, (STRLEN(?templateMotifCigarP08164MF_0019396) - STRLEN(REPLACE(?templateMotifCigarP08164MF_0019396, CONCAT('^(?:-*[^-]){', STR(((259 - ?templateMotifSequenceMatchBeginPositionP0816497) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1110) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP08164MF_0019398, 1, (STRLEN(?targetMotifMatchCigarP08164MF_0019398) - STRLEN(REPLACE(?targetMotifMatchCigarP08164MF_0019398, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1110), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP08164MF_0019398, 1, (STRLEN(?targetMotifMatchCigarP08164MF_0019398) - STRLEN(REPLACE(?targetMotifMatchCigarP08164MF_0019398, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1110), '}'), '')))), '[^-]', ''))) AS ?step2111) . BIND(((?step2111 + ?targetMotifMatchRegionMatchBeginPositionMF_0019399) - 1) AS ?thisPositionOn21) . BIND(?this AS ?pfs1t112) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn20))) AS ?pfsb17) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn21))) AS ?pfse18) . FILTER (REGEX('H[KR]', SUBSTR(?thisSequenceValue, ?thisPositionOn20, (?thisPositionOn21 - ?thisPositionOn20)))) . BIND(URI(CONCAT(STR(?this), '#MF_00193a16')) AS ?annotation16) . BIND(?this AS ?pfs15) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch117 faldo:location ?templateMotifSequenceMatchRegionP08164118 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP08164120 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP08164MF_00193113 . ?templateMotifSequenceMatchRegionP08164118 faldo:begin ?templateMotifSequenceMatchBeginP08164119 . ?templateMotifSequenceMatchBeginP08164119 faldo:position ?templateMotifSequenceMatchBeginPositionP08164114 ; faldo:reference isoform:P08164-1 . ?templateMotifSequenceProfileAlignmentOperationP08164120 edam:has_input signature:MF_00193 ; rdf:type edam:operation_0300 . ?targetMotifMatch121 faldo:location ?targetMotifMatchRegionMatch122 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00193124 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP08164MF_00193115 . ?targetMotifMatchRegionMatch122 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00193123 . ?targetMotifMatchRegionMatchBeginMF_00193123 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00193116 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_00193124 edam:has_input signature:MF_00193 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP08164MF_00193113, 1, (STRLEN(?templateMotifCigarP08164MF_00193113) - STRLEN(REPLACE(?templateMotifCigarP08164MF_00193113, CONCAT('^(?:-*[^-]){', STR(((51 - ?templateMotifSequenceMatchBeginPositionP08164114) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1125) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP08164MF_00193115, 1, (STRLEN(?targetMotifMatchCigarP08164MF_00193115) - STRLEN(REPLACE(?targetMotifMatchCigarP08164MF_00193115, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1125), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP08164MF_00193115, 1, (STRLEN(?targetMotifMatchCigarP08164MF_00193115) - STRLEN(REPLACE(?targetMotifMatchCigarP08164MF_00193115, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1125), '}'), '')))), '[^-]', ''))) AS ?step2126) . BIND(((?step2126 + ?targetMotifMatchRegionMatchBeginPositionMF_00193116) - 1) AS ?thisPositionOn27) . BIND(?thisPositionOn27 AS ?thisPositionOn28) . BIND(?this AS ?pfs1t127) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn27))) AS ?pfsb24) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn28))) AS ?pfse25) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn27, 1) = 'D')) . BIND(URI(CONCAT(STR(?this), '#MF_00193a23')) AS ?annotation23) . BIND(?this AS ?pfs22) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch132 faldo:location ?templateMotifSequenceMatchRegionP08164133 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP08164135 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP08164MF_00193128 . ?templateMotifSequenceMatchRegionP08164133 faldo:begin ?templateMotifSequenceMatchBeginP08164134 . ?templateMotifSequenceMatchBeginP08164134 faldo:position ?templateMotifSequenceMatchBeginPositionP08164129 ; faldo:reference isoform:P08164-1 . ?templateMotifSequenceProfileAlignmentOperationP08164135 edam:has_input signature:MF_00193 ; rdf:type edam:operation_0300 . ?targetMotifMatch136 faldo:location ?targetMotifMatchRegionMatch137 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00193139 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP08164MF_00193130 . ?targetMotifMatchRegionMatch137 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00193138 . ?targetMotifMatchRegionMatchBeginMF_00193138 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00193131 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_00193139 edam:has_input signature:MF_00193 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP08164MF_00193128, 1, (STRLEN(?templateMotifCigarP08164MF_00193128) - STRLEN(REPLACE(?templateMotifCigarP08164MF_00193128, CONCAT('^(?:-*[^-]){', STR(((163 - ?templateMotifSequenceMatchBeginPositionP08164129) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1140) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP08164MF_00193130, 1, (STRLEN(?targetMotifMatchCigarP08164MF_00193130) - STRLEN(REPLACE(?targetMotifMatchCigarP08164MF_00193130, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1140), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP08164MF_00193130, 1, (STRLEN(?targetMotifMatchCigarP08164MF_00193130) - STRLEN(REPLACE(?targetMotifMatchCigarP08164MF_00193130, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1140), '}'), '')))), '[^-]', ''))) AS ?step2141) . BIND(((?step2141 + ?targetMotifMatchRegionMatchBeginPositionMF_00193131) - 1) AS ?thisPositionOn34) . BIND(?thisPositionOn34 AS ?thisPositionOn35) . BIND(?this AS ?pfs1t142) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn34))) AS ?pfsb31) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn35))) AS ?pfse32) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn34, 1) = 'E')) . BIND(URI(CONCAT(STR(?this), '#MF_00193a30')) AS ?annotation30) . BIND(?this AS ?pfs29) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch147 faldo:location ?templateMotifSequenceMatchRegionP08164148 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP08164150 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP08164MF_00193143 . ?templateMotifSequenceMatchRegionP08164148 faldo:begin ?templateMotifSequenceMatchBeginP08164149 . ?templateMotifSequenceMatchBeginP08164149 faldo:position ?templateMotifSequenceMatchBeginPositionP08164144 ; faldo:reference isoform:P08164-1 . ?templateMotifSequenceProfileAlignmentOperationP08164150 edam:has_input signature:MF_00193 ; rdf:type edam:operation_0300 . ?targetMotifMatch151 faldo:location ?targetMotifMatchRegionMatch152 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00193154 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP08164MF_00193145 . ?targetMotifMatchRegionMatch152 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00193153 . ?targetMotifMatchRegionMatchBeginMF_00193153 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00193146 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_00193154 edam:has_input signature:MF_00193 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP08164MF_00193143, 1, (STRLEN(?templateMotifCigarP08164MF_00193143) - STRLEN(REPLACE(?templateMotifCigarP08164MF_00193143, CONCAT('^(?:-*[^-]){', STR(((138 - ?templateMotifSequenceMatchBeginPositionP08164144) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1155) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP08164MF_00193145, 1, (STRLEN(?targetMotifMatchCigarP08164MF_00193145) - STRLEN(REPLACE(?targetMotifMatchCigarP08164MF_00193145, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1155), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP08164MF_00193145, 1, (STRLEN(?targetMotifMatchCigarP08164MF_00193145) - STRLEN(REPLACE(?targetMotifMatchCigarP08164MF_00193145, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1155), '}'), '')))), '[^-]', ''))) AS ?step2156) . BIND(((?step2156 + ?targetMotifMatchRegionMatchBeginPositionMF_00193146) - 1) AS ?thisPositionOn41) . BIND(?thisPositionOn41 AS ?thisPositionOn42) . BIND(?this AS ?pfs1t157) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn41))) AS ?pfsb38) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn42))) AS ?pfse39) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn41, 1) = 'R')) . BIND(URI(CONCAT(STR(?this), '#MF_00193a37')) AS ?annotation37) . BIND(?this AS ?pfs36) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch162 faldo:location ?templateMotifSequenceMatchRegionP08164163 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP08164165 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP08164MF_00193158 . ?templateMotifSequenceMatchRegionP08164163 faldo:begin ?templateMotifSequenceMatchBeginP08164164 . ?templateMotifSequenceMatchBeginP08164164 faldo:position ?templateMotifSequenceMatchBeginPositionP08164159 ; faldo:reference isoform:P08164-1 . ?templateMotifSequenceProfileAlignmentOperationP08164165 edam:has_input signature:MF_00193 ; rdf:type edam:operation_0300 . ?targetMotifMatch166 faldo:location ?targetMotifMatchRegionMatch167 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00193169 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP08164MF_00193160 . ?targetMotifMatchRegionMatch167 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00193168 . ?targetMotifMatchRegionMatchBeginMF_00193168 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00193161 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_00193169 edam:has_input signature:MF_00193 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP08164MF_00193158, 1, (STRLEN(?templateMotifCigarP08164MF_00193158) - STRLEN(REPLACE(?templateMotifCigarP08164MF_00193158, CONCAT('^(?:-*[^-]){', STR(((158 - ?templateMotifSequenceMatchBeginPositionP08164159) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1170) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP08164MF_00193160, 1, (STRLEN(?targetMotifMatchCigarP08164MF_00193160) - STRLEN(REPLACE(?targetMotifMatchCigarP08164MF_00193160, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1170), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP08164MF_00193160, 1, (STRLEN(?targetMotifMatchCigarP08164MF_00193160) - STRLEN(REPLACE(?targetMotifMatchCigarP08164MF_00193160, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1170), '}'), '')))), '[^-]', ''))) AS ?step2171) . BIND(((?step2171 + ?targetMotifMatchRegionMatchBeginPositionMF_00193161) - 1) AS ?thisPositionOn48) . BIND(?thisPositionOn48 AS ?thisPositionOn49) . BIND(?this AS ?pfs1t172) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn48))) AS ?pfsb45) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn49))) AS ?pfse46) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn48, 1) = 'T')) . BIND(URI(CONCAT(STR(?this), '#MF_00193a44')) AS ?annotation44) . BIND(?this AS ?pfs43) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch177 faldo:location ?templateMotifSequenceMatchRegionP08164178 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP08164180 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP08164MF_00193173 . ?templateMotifSequenceMatchRegionP08164178 faldo:begin ?templateMotifSequenceMatchBeginP08164179 . ?templateMotifSequenceMatchBeginP08164179 faldo:position ?templateMotifSequenceMatchBeginPositionP08164174 ; faldo:reference isoform:P08164-1 . ?templateMotifSequenceProfileAlignmentOperationP08164180 edam:has_input signature:MF_00193 ; rdf:type edam:operation_0300 . ?targetMotifMatch181 faldo:location ?targetMotifMatchRegionMatch182 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00193184 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP08164MF_00193175 . ?targetMotifMatchRegionMatch182 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00193183 . ?targetMotifMatchRegionMatchBeginMF_00193183 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00193176 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_00193184 edam:has_input signature:MF_00193 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP08164MF_00193173, 1, (STRLEN(?templateMotifCigarP08164MF_00193173) - STRLEN(REPLACE(?templateMotifCigarP08164MF_00193173, CONCAT('^(?:-*[^-]){', STR(((171 - ?templateMotifSequenceMatchBeginPositionP08164174) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1185) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP08164MF_00193175, 1, (STRLEN(?targetMotifMatchCigarP08164MF_00193175) - STRLEN(REPLACE(?targetMotifMatchCigarP08164MF_00193175, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1185), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP08164MF_00193175, 1, (STRLEN(?targetMotifMatchCigarP08164MF_00193175) - STRLEN(REPLACE(?targetMotifMatchCigarP08164MF_00193175, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1185), '}'), '')))), '[^-]', ''))) AS ?step2186) . BIND(((?step2186 + ?targetMotifMatchRegionMatchBeginPositionMF_00193176) - 1) AS ?thisPositionOn55) . BIND(?thisPositionOn55 AS ?thisPositionOn56) . BIND(?this AS ?pfs1t187) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn55))) AS ?pfsb52) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn56))) AS ?pfse53) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn55, 1) = 'K')) . BIND(URI(CONCAT(STR(?this), '#MF_00193a51')) AS ?annotation51) . BIND(?this AS ?pfs50) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch192 faldo:location ?templateMotifSequenceMatchRegionP08164193 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP08164195 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP08164MF_00193188 . ?templateMotifSequenceMatchRegionP08164193 faldo:begin ?templateMotifSequenceMatchBeginP08164194 . ?templateMotifSequenceMatchBeginP08164194 faldo:position ?templateMotifSequenceMatchBeginPositionP08164189 ; faldo:reference isoform:P08164-1 . ?templateMotifSequenceProfileAlignmentOperationP08164195 edam:has_input signature:MF_00193 ; rdf:type edam:operation_0300 . ?targetMotifMatch196 faldo:location ?targetMotifMatchRegionMatch197 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00193199 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP08164MF_00193190 . ?targetMotifMatchRegionMatch197 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00193198 . ?targetMotifMatchRegionMatchBeginMF_00193198 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00193191 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_00193199 edam:has_input signature:MF_00193 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP08164MF_00193188, 1, (STRLEN(?templateMotifCigarP08164MF_00193188) - STRLEN(REPLACE(?templateMotifCigarP08164MF_00193188, CONCAT('^(?:-*[^-]){', STR(((178 - ?templateMotifSequenceMatchBeginPositionP08164189) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1200) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP08164MF_00193190, 1, (STRLEN(?targetMotifMatchCigarP08164MF_00193190) - STRLEN(REPLACE(?targetMotifMatchCigarP08164MF_00193190, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1200), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP08164MF_00193190, 1, (STRLEN(?targetMotifMatchCigarP08164MF_00193190) - STRLEN(REPLACE(?targetMotifMatchCigarP08164MF_00193190, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1200), '}'), '')))), '[^-]', ''))) AS ?step2201) . BIND(((?step2201 + ?targetMotifMatchRegionMatchBeginPositionMF_00193191) - 1) AS ?thisPositionOn62) . BIND(?thisPositionOn62 AS ?thisPositionOn63) . BIND(?this AS ?pfs1t202) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn62))) AS ?pfsb59) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn63))) AS ?pfse60) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn62, 1) = 'D')) . BIND(URI(CONCAT(STR(?this), '#MF_00193a58')) AS ?annotation58) . BIND(?this AS ?pfs57) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch207 faldo:location ?templateMotifSequenceMatchRegionP08164208 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP08164210 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP08164MF_00193203 . ?templateMotifSequenceMatchRegionP08164208 faldo:begin ?templateMotifSequenceMatchBeginP08164209 . ?templateMotifSequenceMatchBeginP08164209 faldo:position ?templateMotifSequenceMatchBeginPositionP08164204 ; faldo:reference isoform:P08164-1 . ?templateMotifSequenceProfileAlignmentOperationP08164210 edam:has_input signature:MF_00193 ; rdf:type edam:operation_0300 . ?targetMotifMatch211 faldo:location ?targetMotifMatchRegionMatch212 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00193214 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP08164MF_00193205 . ?targetMotifMatchRegionMatch212 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00193213 . ?targetMotifMatchRegionMatchBeginMF_00193213 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00193206 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_00193214 edam:has_input signature:MF_00193 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP08164MF_00193203, 1, (STRLEN(?templateMotifCigarP08164MF_00193203) - STRLEN(REPLACE(?templateMotifCigarP08164MF_00193203, CONCAT('^(?:-*[^-]){', STR(((187 - ?templateMotifSequenceMatchBeginPositionP08164204) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1215) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP08164MF_00193205, 1, (STRLEN(?targetMotifMatchCigarP08164MF_00193205) - STRLEN(REPLACE(?targetMotifMatchCigarP08164MF_00193205, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1215), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP08164MF_00193205, 1, (STRLEN(?targetMotifMatchCigarP08164MF_00193205) - STRLEN(REPLACE(?targetMotifMatchCigarP08164MF_00193205, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1215), '}'), '')))), '[^-]', ''))) AS ?step2216) . BIND(((?step2216 + ?targetMotifMatchRegionMatchBeginPositionMF_00193206) - 1) AS ?thisPositionOn69) . BIND(?thisPositionOn69 AS ?thisPositionOn70) . BIND(?this AS ?pfs1t217) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn69))) AS ?pfsb66) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn70))) AS ?pfse67) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn69, 1) = 'K')) . BIND(URI(CONCAT(STR(?this), '#MF_00193a65')) AS ?annotation65) . BIND(?this AS ?pfs64) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch222 faldo:location ?templateMotifSequenceMatchRegionP08164223 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP08164225 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP08164MF_00193218 . ?templateMotifSequenceMatchRegionP08164223 faldo:begin ?templateMotifSequenceMatchBeginP08164224 . ?templateMotifSequenceMatchBeginP08164224 faldo:position ?templateMotifSequenceMatchBeginPositionP08164219 ; faldo:reference isoform:P08164-1 . ?templateMotifSequenceProfileAlignmentOperationP08164225 edam:has_input signature:MF_00193 ; rdf:type edam:operation_0300 . ?targetMotifMatch226 faldo:location ?targetMotifMatchRegionMatch227 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00193229 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP08164MF_00193220 . ?targetMotifMatchRegionMatch227 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00193228 . ?targetMotifMatchRegionMatchBeginMF_00193228 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00193221 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_00193229 edam:has_input signature:MF_00193 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP08164MF_00193218, 1, (STRLEN(?templateMotifCigarP08164MF_00193218) - STRLEN(REPLACE(?templateMotifCigarP08164MF_00193218, CONCAT('^(?:-*[^-]){', STR(((209 - ?templateMotifSequenceMatchBeginPositionP08164219) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1230) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP08164MF_00193220, 1, (STRLEN(?targetMotifMatchCigarP08164MF_00193220) - STRLEN(REPLACE(?targetMotifMatchCigarP08164MF_00193220, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1230), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP08164MF_00193220, 1, (STRLEN(?targetMotifMatchCigarP08164MF_00193220) - STRLEN(REPLACE(?targetMotifMatchCigarP08164MF_00193220, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1230), '}'), '')))), '[^-]', ''))) AS ?step2231) . BIND(((?step2231 + ?targetMotifMatchRegionMatchBeginPositionMF_00193221) - 1) AS ?thisPositionOn76) . BIND(?thisPositionOn76 AS ?thisPositionOn77) . BIND(?this AS ?pfs1t232) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn76))) AS ?pfsb73) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn77))) AS ?pfse74) . FILTER (REGEX('[ST]', SUBSTR(?thisSequenceValue, ?thisPositionOn76, 1))) . BIND(URI(CONCAT(STR(?this), '#MF_00193a72')) AS ?annotation72) . BIND(?this AS ?pfs71) . } }