CONSTRUCT { _:83847 up:source unirule:MF_00206 . _:83848 up:source unirule:MF_00206 . _:83849 up:source unirule:MF_00206 . _:83850 up:source unirule:MF_00206 . _:83851 up:source unirule:MF_00206 . _:83852 up:source unirule:MF_00206 . _:83853 up:source unirule:MF_00206 . _:83854 up:source unirule:MF_00206 . _:83855 up:source unirule:MF_00206 . _:83856 up:source unirule:MF_00206 . _:83857 up:source unirule:MF_00206 . _:83858 up:source unirule:MF_00206 . _:83859 up:source unirule:MF_00206 . _:83860 up:source unirule:MF_00206 . _:83861 up:source unirule:MF_00206 . _:83862 up:source unirule:MF_00206 . _:83863 up:source unirule:MF_00206 . _:83864 up:source unirule:MF_00206 . _:83865 up:source unirule:MF_00206 . _:83866 up:source unirule:MF_00206 . _:83867 up:source unirule:MF_00206 . _:83868 up:source unirule:MF_00206 . _:83869 up:source unirule:MF_00206 . _:83870 up:source unirule:MF_00206 . _:83871 up:source unirule:MF_00206 . _:83872 up:source unirule:MF_00206 . _:83873 up:source unirule:MF_00206 . _:83874 up:source unirule:MF_00206 . _:83875 up:source unirule:MF_00206 . _:83876 up:source unirule:MF_00206 . _:83877 up:source unirule:MF_00206 . ?this up:alternativeName ?name1 , ?name2 , ?name3 , ?name4 ; up:annotation ?annotation6 , ?annotation7 , ?annotation9 , ?annotation10 , ?annotation12 ; up:classifiedWith GO:0005737 , GO:0009107 , GO:0009249 , GO:0016783 , GO:0016992 , GO:0051539 , keyword:408 , keyword:411 , keyword:479 , keyword:4 , keyword:808 , keyword:949 , keyword:963 ; up:recommendedName ?name0 . ?name0 up:ecName '2.8.1.8' ; up:fullName 'Lipoyl synthase' ; rdf:type up:Structured_Name . ?name1 up:fullName 'Lip-syn' ; up:shortName 'LS' ; rdf:type up:Structured_Name . ?name2 up:fullName 'Lipoate synthase' ; rdf:type up:Structured_Name . ?name3 up:fullName 'Lipoic acid synthase' ; rdf:type up:Structured_Name . ?name4 up:fullName 'Sulfur insertion protein LipA' ; rdf:type up:Structured_Name . ?gene5 skos:prefLabel 'lipA' . ?annotation6 a up:Function_Annotation ; rdfs:comment 'Catalyzes the radical-mediated insertion of two sulfur atoms into the C-6 and C-8 positions of the octanoyl moiety bound to the lipoyl domains of lipoate-dependent enzymes, thereby converting the octanoylated domains into lipoylated derivatives.' . ?annotation7 up:activity ?activity8 ; rdf:type up:Catalytic_Activity_Annotation . ?activity8 up:catalyticActivity <http://rdf.rhea-db.org/16585>; up:enzymeClass <http://purl.uniprot.org/enzyme/2.8.1.8>. ?annotation9 up:cofactor chebi:49883 ; rdf:type up:Cofactor_Annotation ; rdfs:comment 'Binds 2 [4Fe-4S] clusters per subunit. One cluster is coordinated with 3 cysteines and an exchangeable S-adenosyl-L-methionine.' . ?annotation10 a up:Subcellular_Location_Annotation . ?annotation10li11 up:cellularComponent <http://purl.uniprot.org/locations/null>. ?annotation12 a up:Similarity_Annotation ; rdfs:comment 'Belongs to the radical SAM superfamily. Lipoyl synthase family.' . ?pfs15 up:annotation ?annotation16 . ?annotation16 faldo:begin ?pfsb17 ; faldo:end ?pfse18 ; up:ligand ?ligand19 ; rdf:type up:Binding_Site_Annotation . ?pfsb17 faldo:position ?thisPositionOn20 ; rdf:type faldo:ExactPosition . ?pfse18 faldo:position ?thisPositionOn21 ; rdf:type faldo:ExactPosition . ?ligand19 rdfs:subClassOf chebi:49883 . ?pfs22 up:annotation ?annotation23 . ?annotation23 faldo:begin ?pfsb24 ; faldo:end ?pfse25 ; up:ligand ?ligand26 ; rdf:type up:Binding_Site_Annotation . ?pfsb24 faldo:position ?thisPositionOn27 ; rdf:type faldo:ExactPosition . ?pfse25 faldo:position ?thisPositionOn28 ; rdf:type faldo:ExactPosition . ?ligand26 rdfs:subClassOf chebi:49883 . ?pfs29 up:annotation ?annotation30 . ?annotation30 faldo:begin ?pfsb31 ; faldo:end ?pfse32 ; up:ligand ?ligand33 ; rdf:type up:Binding_Site_Annotation . ?pfsb31 faldo:position ?thisPositionOn34 ; rdf:type faldo:ExactPosition . ?pfse32 faldo:position ?thisPositionOn35 ; rdf:type faldo:ExactPosition . ?ligand33 rdfs:subClassOf chebi:49883 . ?pfs36 up:annotation ?annotation37 . ?annotation37 faldo:begin ?pfsb38 ; faldo:end ?pfse39 ; up:ligand ?ligand40 ; rdf:type up:Binding_Site_Annotation . ?pfsb38 faldo:position ?thisPositionOn41 ; rdf:type faldo:ExactPosition . ?pfse39 faldo:position ?thisPositionOn42 ; rdf:type faldo:ExactPosition . ?ligand40 rdfs:subClassOf chebi:49883 . ?pfs43 up:annotation ?annotation44 . ?annotation44 faldo:begin ?pfsb45 ; faldo:end ?pfse46 ; up:ligand ?ligand47 ; rdf:type up:Binding_Site_Annotation . ?pfsb45 faldo:position ?thisPositionOn48 ; rdf:type faldo:ExactPosition . ?pfse46 faldo:position ?thisPositionOn49 ; rdf:type faldo:ExactPosition . ?ligand47 rdfs:subClassOf chebi:49883 . ?pfs50 up:annotation ?annotation51 . ?annotation51 faldo:begin ?pfsb52 ; faldo:end ?pfse53 ; up:ligand ?ligand54 ; rdf:type up:Binding_Site_Annotation . ?pfsb52 faldo:position ?thisPositionOn55 ; rdf:type faldo:ExactPosition . ?pfse53 faldo:position ?thisPositionOn56 ; rdf:type faldo:ExactPosition . ?ligand54 rdfs:subClassOf chebi:49883 . ?pfs57 up:annotation ?annotation58 . ?annotation58 faldo:begin ?pfsb59 ; faldo:end ?pfse60 ; up:ligand ?ligand61 ; rdf:type up:Binding_Site_Annotation . ?pfsb59 faldo:position ?thisPositionOn62 ; rdf:type faldo:ExactPosition . ?pfse60 faldo:position ?thisPositionOn63 ; rdf:type faldo:ExactPosition . ?ligand61 rdfs:subClassOf chebi:49883 . _:83878 a rdf:Statement ; up:attribution _:83847 ; rdf:subject ?this ; rdf:predicate up:recommendedName ; rdf:object ?name0 . _:83879 a rdf:Statement ; up:attribution _:83848 ; rdf:subject ?this ; rdf:predicate up:alternativeName ; rdf:object ?name1 . _:83880 a rdf:Statement ; up:attribution _:83849 ; rdf:subject ?this ; rdf:predicate up:alternativeName ; rdf:object ?name2 . _:83881 a rdf:Statement ; up:attribution _:83850 ; rdf:subject ?this ; rdf:predicate up:alternativeName ; rdf:object ?name3 . _:83882 a rdf:Statement ; up:attribution _:83851 ; rdf:subject ?this ; rdf:predicate up:alternativeName ; rdf:object ?name4 . _:83883 a rdf:Statement ; up:attribution _:83852 ; rdf:subject ?gene5 ; rdf:predicate up:encodedBy ; rdf:object ?gene5 . _:83884 a rdf:Statement ; up:attribution _:83853 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation6 . _:83885 a rdf:Statement ; up:attribution _:83854 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation7 . _:83886 a rdf:Statement ; up:attribution _:83855 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation9 . _:83887 a rdf:Statement ; up:attribution _:83856 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation10 . _:83888 a rdf:Statement ; up:attribution _:83857 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation12 . _:83889 a rdf:Statement ; up:attribution _:83858 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:4 . _:83890 a rdf:Statement ; up:attribution _:83859 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:963 . _:83891 a rdf:Statement ; up:attribution _:83860 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:408 . _:83892 a rdf:Statement ; up:attribution _:83861 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:411 . _:83893 a rdf:Statement ; up:attribution _:83862 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:479 . _:83894 a rdf:Statement ; up:attribution _:83863 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:949 . _:83895 a rdf:Statement ; up:attribution _:83864 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:808 . _:83896 a rdf:Statement ; up:attribution _:83865 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object GO:0016783 . _:83897 a rdf:Statement ; up:attribution _:83866 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object GO:0016992 . _:83898 a rdf:Statement ; up:attribution _:83867 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object GO:0051539 . _:83899 a rdf:Statement ; up:attribution _:83868 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object GO:0009107 . _:83900 a rdf:Statement ; up:attribution _:83869 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object GO:0009249 . _:83901 a rdf:Statement ; up:attribution _:83870 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object GO:0005737 . _:83902 a rdf:Statement ; up:source unirule:MF_00206 ; rdf:subject ?pfs15 ; rdf:predicate up:annotation ; rdf:object ?annotation16 . _:83903 a rdf:Statement ; up:attribution _:83871 ; rdf:subject ?pfs15 ; rdf:predicate up:annotation ; rdf:object ?annotation16 . _:83904 a rdf:Statement ; up:source unirule:MF_00206 ; rdf:subject ?pfs22 ; rdf:predicate up:annotation ; rdf:object ?annotation23 . _:83905 a rdf:Statement ; up:attribution _:83872 ; rdf:subject ?pfs22 ; rdf:predicate up:annotation ; rdf:object ?annotation23 . _:83906 a rdf:Statement ; up:source unirule:MF_00206 ; rdf:subject ?pfs29 ; rdf:predicate up:annotation ; rdf:object ?annotation30 . _:83907 a rdf:Statement ; up:attribution _:83873 ; rdf:subject ?pfs29 ; rdf:predicate up:annotation ; rdf:object ?annotation30 . _:83908 a rdf:Statement ; up:source unirule:MF_00206 ; rdf:subject ?pfs36 ; rdf:predicate up:annotation ; rdf:object ?annotation37 . _:83909 a rdf:Statement ; up:attribution _:83874 ; rdf:subject ?pfs36 ; rdf:predicate up:annotation ; rdf:object ?annotation37 . _:83910 a rdf:Statement ; up:source unirule:MF_00206 ; rdf:subject ?pfs43 ; rdf:predicate up:annotation ; rdf:object ?annotation44 . _:83911 a rdf:Statement ; up:attribution _:83875 ; rdf:subject ?pfs43 ; rdf:predicate up:annotation ; rdf:object ?annotation44 . _:83912 a rdf:Statement ; up:source unirule:MF_00206 ; rdf:subject ?pfs50 ; rdf:predicate up:annotation ; rdf:object ?annotation51 . _:83913 a rdf:Statement ; up:attribution _:83876 ; rdf:subject ?pfs50 ; rdf:predicate up:annotation ; rdf:object ?annotation51 . _:83914 a rdf:Statement ; up:source unirule:MF_00206 ; rdf:subject ?pfs57 ; rdf:predicate up:annotation ; rdf:object ?annotation58 . _:83915 a rdf:Statement ; up:attribution _:83877 ; rdf:subject ?pfs57 ; rdf:predicate up:annotation ; rdf:object ?annotation58 . } WHERE { #baseURI: http://purl.uniprot.org/unirule/MF_00206 #Rule MF_00206 Created by:hamap on:2001-06-01 Modified by:ecoudert on:2023-09-14 { ?this up:organism ?thisOrganism ; rdfs:seeAlso signature:MF_00206 . ?thisOrganism rdfs:subClassOf+ taxon:2 . FILTER (! (EXISTS { ?this rdfs:seeAlso signature:MF_03129 . })) . } UNION { ?this up:organism ?thisOrganism ; rdfs:seeAlso signature:MF_00206 . ?thisOrganism rdfs:subClassOf+ taxon:2 . FILTER (! (EXISTS { ?this rdfs:seeAlso signature:MF_03129 . })) . FILTER (! (EXISTS { ?thisOrganism rdfs:subClassOf+ taxon:2759 . })) . } UNION { ?this up:organism ?thisOrganism ; rdfs:seeAlso signature:MF_00206 . ?thisOrganism rdfs:subClassOf+ taxon:2 . FILTER (! (EXISTS { ?this rdfs:seeAlso signature:MF_03128 . })) . FILTER (! (EXISTS { ?thisOrganism rdfs:subClassOf+ taxon:2759 . })) . } UNION { ?this up:organism ?thisOrganism ; rdfs:seeAlso signature:MF_00206 . ?thisOrganism rdfs:subClassOf+ taxon:2 . FILTER (! (EXISTS { ?thisOrganism rdfs:subClassOf+ taxon:2759 . })) . } UNION { ?this up:organism ?thisOrganism ; rdfs:seeAlso signature:MF_00206 . ?thisOrganism rdfs:subClassOf+ taxon:2157 . FILTER (! (EXISTS { ?this rdfs:seeAlso signature:MF_03129 . })) . } UNION { ?this up:organism ?thisOrganism ; rdfs:seeAlso signature:MF_00206 . ?thisOrganism rdfs:subClassOf+ taxon:2157 . FILTER (! (EXISTS { ?this rdfs:seeAlso signature:MF_03129 . })) . FILTER (! (EXISTS { ?thisOrganism rdfs:subClassOf+ taxon:2759 . })) . } UNION { ?this up:organism ?thisOrganism ; rdfs:seeAlso signature:MF_00206 . ?thisOrganism rdfs:subClassOf+ taxon:2157 . FILTER (! (EXISTS { ?this rdfs:seeAlso signature:MF_03128 . })) . FILTER (! (EXISTS { ?thisOrganism rdfs:subClassOf+ taxon:2759 . })) . } UNION { ?this up:organism ?thisOrganism ; rdfs:seeAlso signature:MF_00206 . ?thisOrganism rdfs:subClassOf+ taxon:2157 . FILTER (! (EXISTS { ?thisOrganism rdfs:subClassOf+ taxon:2759 . })) . } BIND(URI(CONCAT(STR(?this), '#MF_00206a0')) AS ?name0) . BIND(URI(CONCAT(STR(?this), '#MF_00206a1')) AS ?name1) . BIND(URI(CONCAT(STR(?this), '#MF_00206a2')) AS ?name2) . BIND(URI(CONCAT(STR(?this), '#MF_00206a3')) AS ?name3) . BIND(URI(CONCAT(STR(?this), '#MF_00206a4')) AS ?name4) . BIND(URI(CONCAT(STR(?this), '#MF_00206a6')) AS ?annotation6) . BIND(URI(CONCAT(STR(?this), '#MF_00206a7')) AS ?annotation7) . BIND(URI(CONCAT(STR(?this), '#MF_00206a9')) AS ?annotation9) . BIND(URI(CONCAT(STR(?this), '#MF_00206a10')) AS ?annotation10) . BIND(URI(CONCAT(STR(?this), '#MF_00206a12')) AS ?annotation12) . OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch68 faldo:location ?templateMotifSequenceMatchRegionP9WK9169 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP9WK9171 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP9WK91MF_0020664 . ?templateMotifSequenceMatchRegionP9WK9169 faldo:begin ?templateMotifSequenceMatchBeginP9WK9170 . ?templateMotifSequenceMatchBeginP9WK9170 faldo:position ?templateMotifSequenceMatchBeginPositionP9WK9165 ; faldo:reference isoform:P9WK91-1 . ?templateMotifSequenceProfileAlignmentOperationP9WK9171 edam:has_input signature:MF_00206 ; rdf:type edam:operation_0300 . ?targetMotifMatch72 faldo:location ?targetMotifMatchRegionMatch73 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0020675 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP9WK91MF_0020666 . ?targetMotifMatchRegionMatch73 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0020674 . ?targetMotifMatchRegionMatchBeginMF_0020674 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0020667 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_0020675 edam:has_input signature:MF_00206 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP9WK91MF_0020664, 1, (STRLEN(?templateMotifCigarP9WK91MF_0020664) - STRLEN(REPLACE(?templateMotifCigarP9WK91MF_0020664, CONCAT('^(?:-*[^-]){', STR(((55 - ?templateMotifSequenceMatchBeginPositionP9WK9165) + 1)), '}'), '')))), '[a-z]', '')) AS ?step176) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP9WK91MF_0020666, 1, (STRLEN(?targetMotifMatchCigarP9WK91MF_0020666) - STRLEN(REPLACE(?targetMotifMatchCigarP9WK91MF_0020666, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step176), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP9WK91MF_0020666, 1, (STRLEN(?targetMotifMatchCigarP9WK91MF_0020666) - STRLEN(REPLACE(?targetMotifMatchCigarP9WK91MF_0020666, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step176), '}'), '')))), '[^-]', ''))) AS ?step277) . BIND(((?step277 + ?targetMotifMatchRegionMatchBeginPositionMF_0020667) - 1) AS ?thisPositionOn20) . BIND(?thisPositionOn20 AS ?thisPositionOn21) . BIND(?this AS ?pfs1t78) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn20))) AS ?pfsb17) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn21))) AS ?pfse18) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn20, 1) = 'C')) . BIND(URI(CONCAT(STR(?this), '#MF_00206a16')) AS ?annotation16) . BIND(?this AS ?pfs15) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch83 faldo:location ?templateMotifSequenceMatchRegionP9WK9184 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP9WK9186 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP9WK91MF_0020679 . ?templateMotifSequenceMatchRegionP9WK9184 faldo:begin ?templateMotifSequenceMatchBeginP9WK9185 . ?templateMotifSequenceMatchBeginP9WK9185 faldo:position ?templateMotifSequenceMatchBeginPositionP9WK9180 ; faldo:reference isoform:P9WK91-1 . ?templateMotifSequenceProfileAlignmentOperationP9WK9186 edam:has_input signature:MF_00206 ; rdf:type edam:operation_0300 . ?targetMotifMatch87 faldo:location ?targetMotifMatchRegionMatch88 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0020690 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP9WK91MF_0020681 . ?targetMotifMatchRegionMatch88 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0020689 . ?targetMotifMatchRegionMatchBeginMF_0020689 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0020682 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_0020690 edam:has_input signature:MF_00206 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP9WK91MF_0020679, 1, (STRLEN(?templateMotifCigarP9WK91MF_0020679) - STRLEN(REPLACE(?templateMotifCigarP9WK91MF_0020679, CONCAT('^(?:-*[^-]){', STR(((60 - ?templateMotifSequenceMatchBeginPositionP9WK9180) + 1)), '}'), '')))), '[a-z]', '')) AS ?step191) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP9WK91MF_0020681, 1, (STRLEN(?targetMotifMatchCigarP9WK91MF_0020681) - STRLEN(REPLACE(?targetMotifMatchCigarP9WK91MF_0020681, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step191), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP9WK91MF_0020681, 1, (STRLEN(?targetMotifMatchCigarP9WK91MF_0020681) - STRLEN(REPLACE(?targetMotifMatchCigarP9WK91MF_0020681, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step191), '}'), '')))), '[^-]', ''))) AS ?step292) . BIND(((?step292 + ?targetMotifMatchRegionMatchBeginPositionMF_0020682) - 1) AS ?thisPositionOn27) . BIND(?thisPositionOn27 AS ?thisPositionOn28) . BIND(?this AS ?pfs1t93) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn27))) AS ?pfsb24) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn28))) AS ?pfse25) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn27, 1) = 'C')) . BIND(URI(CONCAT(STR(?this), '#MF_00206a23')) AS ?annotation23) . BIND(?this AS ?pfs22) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch98 faldo:location ?templateMotifSequenceMatchRegionP9WK9199 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP9WK91101 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP9WK91MF_0020694 . ?templateMotifSequenceMatchRegionP9WK9199 faldo:begin ?templateMotifSequenceMatchBeginP9WK91100 . ?templateMotifSequenceMatchBeginP9WK91100 faldo:position ?templateMotifSequenceMatchBeginPositionP9WK9195 ; faldo:reference isoform:P9WK91-1 . ?templateMotifSequenceProfileAlignmentOperationP9WK91101 edam:has_input signature:MF_00206 ; rdf:type edam:operation_0300 . ?targetMotifMatch102 faldo:location ?targetMotifMatchRegionMatch103 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00206105 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP9WK91MF_0020696 . ?targetMotifMatchRegionMatch103 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00206104 . ?targetMotifMatchRegionMatchBeginMF_00206104 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0020697 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_00206105 edam:has_input signature:MF_00206 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP9WK91MF_0020694, 1, (STRLEN(?templateMotifCigarP9WK91MF_0020694) - STRLEN(REPLACE(?templateMotifCigarP9WK91MF_0020694, CONCAT('^(?:-*[^-]){', STR(((66 - ?templateMotifSequenceMatchBeginPositionP9WK9195) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1106) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP9WK91MF_0020696, 1, (STRLEN(?targetMotifMatchCigarP9WK91MF_0020696) - STRLEN(REPLACE(?targetMotifMatchCigarP9WK91MF_0020696, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1106), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP9WK91MF_0020696, 1, (STRLEN(?targetMotifMatchCigarP9WK91MF_0020696) - STRLEN(REPLACE(?targetMotifMatchCigarP9WK91MF_0020696, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1106), '}'), '')))), '[^-]', ''))) AS ?step2107) . BIND(((?step2107 + ?targetMotifMatchRegionMatchBeginPositionMF_0020697) - 1) AS ?thisPositionOn34) . BIND(?thisPositionOn34 AS ?thisPositionOn35) . BIND(?this AS ?pfs1t108) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn34))) AS ?pfsb31) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn35))) AS ?pfse32) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn34, 1) = 'C')) . BIND(URI(CONCAT(STR(?this), '#MF_00206a30')) AS ?annotation30) . BIND(?this AS ?pfs29) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch113 faldo:location ?templateMotifSequenceMatchRegionP9WK91114 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP9WK91116 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP9WK91MF_00206109 . ?templateMotifSequenceMatchRegionP9WK91114 faldo:begin ?templateMotifSequenceMatchBeginP9WK91115 . ?templateMotifSequenceMatchBeginP9WK91115 faldo:position ?templateMotifSequenceMatchBeginPositionP9WK91110 ; faldo:reference isoform:P9WK91-1 . ?templateMotifSequenceProfileAlignmentOperationP9WK91116 edam:has_input signature:MF_00206 ; rdf:type edam:operation_0300 . ?targetMotifMatch117 faldo:location ?targetMotifMatchRegionMatch118 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00206120 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP9WK91MF_00206111 . ?targetMotifMatchRegionMatch118 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00206119 . ?targetMotifMatchRegionMatchBeginMF_00206119 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00206112 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_00206120 edam:has_input signature:MF_00206 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP9WK91MF_00206109, 1, (STRLEN(?templateMotifCigarP9WK91MF_00206109) - STRLEN(REPLACE(?templateMotifCigarP9WK91MF_00206109, CONCAT('^(?:-*[^-]){', STR(((81 - ?templateMotifSequenceMatchBeginPositionP9WK91110) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1121) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP9WK91MF_00206111, 1, (STRLEN(?targetMotifMatchCigarP9WK91MF_00206111) - STRLEN(REPLACE(?targetMotifMatchCigarP9WK91MF_00206111, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1121), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP9WK91MF_00206111, 1, (STRLEN(?targetMotifMatchCigarP9WK91MF_00206111) - STRLEN(REPLACE(?targetMotifMatchCigarP9WK91MF_00206111, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1121), '}'), '')))), '[^-]', ''))) AS ?step2122) . BIND(((?step2122 + ?targetMotifMatchRegionMatchBeginPositionMF_00206112) - 1) AS ?thisPositionOn41) . BIND(?thisPositionOn41 AS ?thisPositionOn42) . BIND(?this AS ?pfs1t123) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn41))) AS ?pfsb38) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn42))) AS ?pfse39) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn41, 1) = 'C')) . BIND(URI(CONCAT(STR(?this), '#MF_00206a37')) AS ?annotation37) . BIND(?this AS ?pfs36) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch128 faldo:location ?templateMotifSequenceMatchRegionP9WK91129 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP9WK91131 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP9WK91MF_00206124 . ?templateMotifSequenceMatchRegionP9WK91129 faldo:begin ?templateMotifSequenceMatchBeginP9WK91130 . ?templateMotifSequenceMatchBeginP9WK91130 faldo:position ?templateMotifSequenceMatchBeginPositionP9WK91125 ; faldo:reference isoform:P9WK91-1 . ?templateMotifSequenceProfileAlignmentOperationP9WK91131 edam:has_input signature:MF_00206 ; rdf:type edam:operation_0300 . ?targetMotifMatch132 faldo:location ?targetMotifMatchRegionMatch133 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00206135 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP9WK91MF_00206126 . ?targetMotifMatchRegionMatch133 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00206134 . ?targetMotifMatchRegionMatchBeginMF_00206134 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00206127 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_00206135 edam:has_input signature:MF_00206 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP9WK91MF_00206124, 1, (STRLEN(?templateMotifCigarP9WK91MF_00206124) - STRLEN(REPLACE(?templateMotifCigarP9WK91MF_00206124, CONCAT('^(?:-*[^-]){', STR(((85 - ?templateMotifSequenceMatchBeginPositionP9WK91125) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1136) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP9WK91MF_00206126, 1, (STRLEN(?targetMotifMatchCigarP9WK91MF_00206126) - STRLEN(REPLACE(?targetMotifMatchCigarP9WK91MF_00206126, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1136), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP9WK91MF_00206126, 1, (STRLEN(?targetMotifMatchCigarP9WK91MF_00206126) - STRLEN(REPLACE(?targetMotifMatchCigarP9WK91MF_00206126, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1136), '}'), '')))), '[^-]', ''))) AS ?step2137) . BIND(((?step2137 + ?targetMotifMatchRegionMatchBeginPositionMF_00206127) - 1) AS ?thisPositionOn48) . BIND(?thisPositionOn48 AS ?thisPositionOn49) . BIND(?this AS ?pfs1t138) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn48))) AS ?pfsb45) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn49))) AS ?pfse46) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn48, 1) = 'C')) . BIND(URI(CONCAT(STR(?this), '#MF_00206a44')) AS ?annotation44) . BIND(?this AS ?pfs43) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch143 faldo:location ?templateMotifSequenceMatchRegionP9WK91144 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP9WK91146 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP9WK91MF_00206139 . ?templateMotifSequenceMatchRegionP9WK91144 faldo:begin ?templateMotifSequenceMatchBeginP9WK91145 . ?templateMotifSequenceMatchBeginP9WK91145 faldo:position ?templateMotifSequenceMatchBeginPositionP9WK91140 ; faldo:reference isoform:P9WK91-1 . ?templateMotifSequenceProfileAlignmentOperationP9WK91146 edam:has_input signature:MF_00206 ; rdf:type edam:operation_0300 . ?targetMotifMatch147 faldo:location ?targetMotifMatchRegionMatch148 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00206150 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP9WK91MF_00206141 . ?targetMotifMatchRegionMatch148 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00206149 . ?targetMotifMatchRegionMatchBeginMF_00206149 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00206142 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_00206150 edam:has_input signature:MF_00206 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP9WK91MF_00206139, 1, (STRLEN(?templateMotifCigarP9WK91MF_00206139) - STRLEN(REPLACE(?templateMotifCigarP9WK91MF_00206139, CONCAT('^(?:-*[^-]){', STR(((88 - ?templateMotifSequenceMatchBeginPositionP9WK91140) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1151) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP9WK91MF_00206141, 1, (STRLEN(?targetMotifMatchCigarP9WK91MF_00206141) - STRLEN(REPLACE(?targetMotifMatchCigarP9WK91MF_00206141, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1151), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP9WK91MF_00206141, 1, (STRLEN(?targetMotifMatchCigarP9WK91MF_00206141) - STRLEN(REPLACE(?targetMotifMatchCigarP9WK91MF_00206141, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1151), '}'), '')))), '[^-]', ''))) AS ?step2152) . BIND(((?step2152 + ?targetMotifMatchRegionMatchBeginPositionMF_00206142) - 1) AS ?thisPositionOn55) . BIND(?thisPositionOn55 AS ?thisPositionOn56) . BIND(?this AS ?pfs1t153) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn55))) AS ?pfsb52) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn56))) AS ?pfse53) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn55, 1) = 'C')) . BIND(URI(CONCAT(STR(?this), '#MF_00206a51')) AS ?annotation51) . BIND(?this AS ?pfs50) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch158 faldo:location ?templateMotifSequenceMatchRegionP9WK91159 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP9WK91161 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP9WK91MF_00206154 . ?templateMotifSequenceMatchRegionP9WK91159 faldo:begin ?templateMotifSequenceMatchBeginP9WK91160 . ?templateMotifSequenceMatchBeginP9WK91160 faldo:position ?templateMotifSequenceMatchBeginPositionP9WK91155 ; faldo:reference isoform:P9WK91-1 . ?templateMotifSequenceProfileAlignmentOperationP9WK91161 edam:has_input signature:MF_00206 ; rdf:type edam:operation_0300 . ?targetMotifMatch162 faldo:location ?targetMotifMatchRegionMatch163 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00206165 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP9WK91MF_00206156 . ?targetMotifMatchRegionMatch163 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00206164 . ?targetMotifMatchRegionMatchBeginMF_00206164 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00206157 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_00206165 edam:has_input signature:MF_00206 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP9WK91MF_00206154, 1, (STRLEN(?templateMotifCigarP9WK91MF_00206154) - STRLEN(REPLACE(?templateMotifCigarP9WK91MF_00206154, CONCAT('^(?:-*[^-]){', STR(((292 - ?templateMotifSequenceMatchBeginPositionP9WK91155) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1166) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP9WK91MF_00206156, 1, (STRLEN(?targetMotifMatchCigarP9WK91MF_00206156) - STRLEN(REPLACE(?targetMotifMatchCigarP9WK91MF_00206156, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1166), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP9WK91MF_00206156, 1, (STRLEN(?targetMotifMatchCigarP9WK91MF_00206156) - STRLEN(REPLACE(?targetMotifMatchCigarP9WK91MF_00206156, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1166), '}'), '')))), '[^-]', ''))) AS ?step2167) . BIND(((?step2167 + ?targetMotifMatchRegionMatchBeginPositionMF_00206157) - 1) AS ?thisPositionOn62) . BIND(?thisPositionOn62 AS ?thisPositionOn63) . BIND(?this AS ?pfs1t168) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn62))) AS ?pfsb59) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn63))) AS ?pfse60) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn62, 1) = 'S')) . BIND(URI(CONCAT(STR(?this), '#MF_00206a58')) AS ?annotation58) . BIND(?this AS ?pfs57) . } OPTIONAL { ?this a up:Protein . ?this up:organism ?thisOrganism . ?thisOrganism rdfs:subClassOf+ taxon:1385 . BIND(?this AS ?case13) . } OPTIONAL { ?this a up:Protein . ?this up:organism ?thisOrganism . FILTER (! (EXISTS { ?thisOrganism rdfs:subClassOf+ taxon:1385 . })) . BIND(?this AS ?case14) . } }