CONSTRUCT { _:96219 up:source unirule:MF_00225 . _:96220 up:source unirule:MF_00225 . _:96221 up:source unirule:MF_00225 . _:96222 up:source unirule:MF_00225 . _:96223 up:source unirule:MF_00225 . _:96224 up:source unirule:MF_00225 . _:96225 up:source unirule:MF_00225 . _:96226 up:source unirule:MF_00225 . _:96227 up:source unirule:MF_00225 . _:96228 up:source unirule:MF_00225 . _:96229 up:source unirule:MF_00225 . _:96230 up:source unirule:MF_00225 . _:96231 up:source unirule:MF_00225 . _:96232 up:source unirule:MF_00225 . _:96233 up:source unirule:MF_00225 . _:96234 up:source unirule:MF_00225 . _:96235 up:source unirule:MF_00225 . _:96236 up:source unirule:MF_00225 . _:96237 up:source unirule:MF_00225 . _:96238 up:source unirule:MF_00225 . _:96239 up:source unirule:MF_00225 . _:96240 up:source unirule:MF_00225 . _:96241 up:source unirule:MF_00225 . _:96242 up:source unirule:MF_00225 . _:96243 up:source unirule:MF_00225 . _:96244 up:source unirule:MF_00225 . _:96245 up:source unirule:MF_00225 . _:96246 up:source unirule:MF_00225 . _:96247 up:source unirule:MF_00225 . _:96248 up:source unirule:MF_00225 . _:96249 up:source unirule:MF_00225 . _:96250 up:source unirule:MF_00225 . _:96251 up:source unirule:MF_00225 . _:96252 up:source unirule:MF_00225 . _:96253 up:source unirule:MF_00225 . ?this up:alternativeName ?name1 , ?name2 ; up:annotation ?annotation4 , ?annotation5 , ?annotation7 , ?annotation8 , ?annotation9 , ?annotation10 , ?annotation12 ; up:classifiedWith GO:0004152 , GO:0005886 , GO:0044205 , keyword:1003 , keyword:285 , keyword:288 , keyword:472 , keyword:560 , keyword:665 ; up:recommendedName ?name0 . ?name0 up:ecName '1.3.5.2' ; up:fullName 'Dihydroorotate dehydrogenase (quinone)' ; rdf:type up:Structured_Name . ?name1 up:fullName 'DHOdehase' ; up:shortName 'DHOD' , 'DHODase' ; rdf:type up:Structured_Name . ?name2 up:fullName 'Dihydroorotate oxidase' ; rdf:type up:Structured_Name . ?gene3 skos:prefLabel 'pyrD' . ?annotation4 a up:Function_Annotation ; rdfs:comment 'Catalyzes the conversion of dihydroorotate to orotate with quinone as electron acceptor.' . ?annotation5 up:activity ?activity6 ; rdf:type up:Catalytic_Activity_Annotation . ?activity6 up:catalyticActivity <http://rdf.rhea-db.org/30187>; up:enzymeClass <http://purl.uniprot.org/enzyme/1.3.5.2>. ?annotation7 up:cofactor chebi:58210 ; rdf:type up:Cofactor_Annotation ; rdfs:comment 'Binds 1 FMN per subunit.' . ?annotation8 a up:Pathway_Annotation ; rdfs:comment 'Pyrimidine metabolism; UMP biosynthesis via de novo pathway; orotate from (S)-dihydroorotate (quinone route): step 1/1.' . ?annotation9 a up:Subunit_Annotation ; rdfs:comment 'Monomer.' . ?annotation10 a up:Subcellular_Location_Annotation . ?annotation10li11 up:cellularComponent <http://purl.uniprot.org/locations/null>. ?annotation12 a up:Similarity_Annotation ; rdfs:comment 'Belongs to the dihydroorotate dehydrogenase family. Type 2 subfamily.' . ?pfs13 up:annotation ?annotation14 . ?annotation14 faldo:begin ?pfsb15 ; faldo:end ?pfse16 ; up:ligand ?ligand17 ; rdf:type up:Binding_Site_Annotation . ?pfsb15 faldo:position ?thisPositionOn18 ; rdf:type faldo:ExactPosition . ?pfse16 faldo:position ?thisPositionOn19 ; rdf:type faldo:ExactPosition . ?ligand17 rdfs:subClassOf chebi:58210 . ?pfs20 up:annotation ?annotation21 . ?annotation21 faldo:begin ?pfsb22 ; faldo:end ?pfse23 ; up:ligand ?ligand24 ; rdf:type up:Binding_Site_Annotation . ?pfsb22 faldo:position ?thisPositionOn25 ; rdf:type faldo:ExactPosition . ?pfse23 faldo:position ?thisPositionOn26 ; rdf:type faldo:ExactPosition . ?ligand24 rdfs:subClassOf chebi:58210 . ?pfs27 up:annotation ?annotation28 . ?annotation28 faldo:begin ?pfsb29 ; faldo:end ?pfse30 ; up:ligand ?ligand31 ; rdf:type up:Binding_Site_Annotation . ?pfsb29 faldo:position ?thisPositionOn33 ; rdf:type faldo:ExactPosition . ?pfse30 faldo:position ?thisPositionOn34 ; rdf:type faldo:ExactPosition . ?ligand31 rdfs:subClassOf ?molecule32 . ?molecule32 rdfs:label 'substrate' . ?pfs35 up:annotation ?annotation36 . ?annotation36 faldo:begin ?pfsb37 ; faldo:end ?pfse38 ; up:ligand ?ligand39 ; rdf:type up:Binding_Site_Annotation . ?pfsb37 faldo:position ?thisPositionOn41 ; rdf:type faldo:ExactPosition . ?pfse38 faldo:position ?thisPositionOn42 ; rdf:type faldo:ExactPosition . ?ligand39 rdfs:subClassOf ?molecule40 . ?molecule40 rdfs:label 'substrate' . ?pfs43 up:annotation ?annotation44 . ?annotation44 faldo:begin ?pfsb45 ; faldo:end ?pfse46 ; rdf:type up:Active_Site_Annotation ; rdfs:comment 'Nucleophile' . ?pfsb45 faldo:position ?thisPositionOn47 ; rdf:type faldo:ExactPosition . ?pfse46 faldo:position ?thisPositionOn48 ; rdf:type faldo:ExactPosition . ?pfs49 up:annotation ?annotation50 . ?annotation50 faldo:begin ?pfsb51 ; faldo:end ?pfse52 ; up:ligand ?ligand53 ; rdf:type up:Binding_Site_Annotation . ?pfsb51 faldo:position ?thisPositionOn55 ; rdf:type faldo:ExactPosition . ?pfse52 faldo:position ?thisPositionOn56 ; rdf:type faldo:ExactPosition . ?ligand53 rdfs:subClassOf ?molecule54 . ?molecule54 rdfs:label 'substrate' . ?pfs57 up:annotation ?annotation58 . ?annotation58 faldo:begin ?pfsb59 ; faldo:end ?pfse60 ; up:ligand ?ligand61 ; rdf:type up:Binding_Site_Annotation . ?pfsb59 faldo:position ?thisPositionOn62 ; rdf:type faldo:ExactPosition . ?pfse60 faldo:position ?thisPositionOn63 ; rdf:type faldo:ExactPosition . ?ligand61 rdfs:subClassOf chebi:58210 . ?pfs64 up:annotation ?annotation65 . ?annotation65 faldo:begin ?pfsb66 ; faldo:end ?pfse67 ; up:ligand ?ligand68 ; rdf:type up:Binding_Site_Annotation . ?pfsb66 faldo:position ?thisPositionOn69 ; rdf:type faldo:ExactPosition . ?pfse67 faldo:position ?thisPositionOn70 ; rdf:type faldo:ExactPosition . ?ligand68 rdfs:subClassOf chebi:58210 . ?pfs71 up:annotation ?annotation72 . ?annotation72 faldo:begin ?pfsb73 ; faldo:end ?pfse74 ; up:ligand ?ligand75 ; rdf:type up:Binding_Site_Annotation . ?pfsb73 faldo:position ?thisPositionOn76 ; rdf:type faldo:ExactPosition . ?pfse74 faldo:position ?thisPositionOn77 ; rdf:type faldo:ExactPosition . ?ligand75 rdfs:subClassOf chebi:58210 . ?pfs78 up:annotation ?annotation79 . ?annotation79 faldo:begin ?pfsb80 ; faldo:end ?pfse81 ; up:ligand ?ligand82 ; rdf:type up:Binding_Site_Annotation . ?pfsb80 faldo:position ?thisPositionOn84 ; rdf:type faldo:ExactPosition . ?pfse81 faldo:position ?thisPositionOn85 ; rdf:type faldo:ExactPosition . ?ligand82 rdfs:subClassOf ?molecule83 . ?molecule83 rdfs:label 'substrate' . ?pfs86 up:annotation ?annotation87 . ?annotation87 faldo:begin ?pfsb88 ; faldo:end ?pfse89 ; up:ligand ?ligand90 ; rdf:type up:Binding_Site_Annotation . ?pfsb88 faldo:position ?thisPositionOn92 ; rdf:type faldo:ExactPosition . ?pfse89 faldo:position ?thisPositionOn93 ; rdf:type faldo:ExactPosition . ?ligand90 rdfs:subClassOf ?molecule91 . ?molecule91 rdfs:label 'substrate' . ?pfs94 up:annotation ?annotation95 . ?annotation95 faldo:begin ?pfsb96 ; faldo:end ?pfse97 ; up:ligand ?ligand98 ; rdf:type up:Binding_Site_Annotation . ?pfsb96 faldo:position ?thisPositionOn99 ; rdf:type faldo:ExactPosition . ?pfse97 faldo:position ?thisPositionOn100 ; rdf:type faldo:ExactPosition . ?ligand98 rdfs:subClassOf chebi:58210 . ?pfs101 up:annotation ?annotation102 . ?annotation102 faldo:begin ?pfsb103 ; faldo:end ?pfse104 ; up:ligand ?ligand105 ; rdf:type up:Binding_Site_Annotation . ?pfsb103 faldo:position ?thisPositionOn106 ; rdf:type faldo:ExactPosition . ?pfse104 faldo:position ?thisPositionOn107 ; rdf:type faldo:ExactPosition . ?ligand105 rdfs:subClassOf chebi:58210 . ?pfs108 up:annotation ?annotation109 . ?annotation109 faldo:begin ?pfsb110 ; faldo:end ?pfse111 ; up:ligand ?ligand112 ; rdf:type up:Binding_Site_Annotation . ?pfsb110 faldo:position ?thisPositionOn113 ; rdf:type faldo:ExactPosition . ?pfse111 faldo:position ?thisPositionOn114 ; rdf:type faldo:ExactPosition . ?ligand112 rdfs:subClassOf chebi:58210 . ?pfs115 up:annotation ?annotation116 . ?annotation116 faldo:begin ?pfsb117 ; faldo:end ?pfse118 ; up:ligand ?ligand119 ; rdf:type up:Binding_Site_Annotation . ?pfsb117 faldo:position ?thisPositionOn120 ; rdf:type faldo:ExactPosition . ?pfse118 faldo:position ?thisPositionOn121 ; rdf:type faldo:ExactPosition . ?ligand119 rdfs:subClassOf chebi:58210 . _:96254 a rdf:Statement ; up:attribution _:96219 ; rdf:subject ?this ; rdf:predicate up:recommendedName ; rdf:object ?name0 . _:96255 a rdf:Statement ; up:attribution _:96220 ; rdf:subject ?this ; rdf:predicate up:alternativeName ; rdf:object ?name1 . _:96256 a rdf:Statement ; up:attribution _:96221 ; rdf:subject ?this ; rdf:predicate up:alternativeName ; rdf:object ?name2 . _:96257 a rdf:Statement ; up:attribution _:96222 ; rdf:subject ?gene3 ; rdf:predicate up:encodedBy ; rdf:object ?gene3 . _:96258 a rdf:Statement ; up:attribution _:96223 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation4 . _:96259 a rdf:Statement ; up:attribution _:96224 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation5 . _:96260 a rdf:Statement ; up:attribution _:96225 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation7 . _:96261 a rdf:Statement ; up:attribution _:96226 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation8 . _:96262 a rdf:Statement ; up:attribution _:96227 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation9 . _:96263 a rdf:Statement ; up:attribution _:96228 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation10 . _:96264 a rdf:Statement ; up:attribution _:96229 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation12 . _:96265 a rdf:Statement ; up:attribution _:96230 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:1003 . _:96266 a rdf:Statement ; up:attribution _:96231 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:285 . _:96267 a rdf:Statement ; up:attribution _:96232 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:288 . _:96268 a rdf:Statement ; up:attribution _:96233 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:472 . _:96269 a rdf:Statement ; up:attribution _:96234 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:560 . _:96270 a rdf:Statement ; up:attribution _:96235 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:665 . _:96271 a rdf:Statement ; up:attribution _:96236 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object GO:0004152 . _:96272 a rdf:Statement ; up:attribution _:96237 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object GO:0044205 . _:96273 a rdf:Statement ; up:attribution _:96238 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object GO:0005886 . _:96274 a rdf:Statement ; up:source unirule:MF_00225 ; rdf:subject ?pfs13 ; rdf:predicate up:annotation ; rdf:object ?annotation14 . _:96275 a rdf:Statement ; up:attribution _:96239 ; rdf:subject ?pfs13 ; rdf:predicate up:annotation ; rdf:object ?annotation14 . _:96276 a rdf:Statement ; up:source unirule:MF_00225 ; rdf:subject ?pfs20 ; rdf:predicate up:annotation ; rdf:object ?annotation21 . _:96277 a rdf:Statement ; up:attribution _:96240 ; rdf:subject ?pfs20 ; rdf:predicate up:annotation ; rdf:object ?annotation21 . _:96278 a rdf:Statement ; up:source unirule:MF_00225 ; rdf:subject ?pfs27 ; rdf:predicate up:annotation ; rdf:object ?annotation28 . _:96279 a rdf:Statement ; up:attribution _:96241 ; rdf:subject ?pfs27 ; rdf:predicate up:annotation ; rdf:object ?annotation28 . _:96280 a rdf:Statement ; up:source unirule:MF_00225 ; rdf:subject ?pfs35 ; rdf:predicate up:annotation ; rdf:object ?annotation36 . _:96281 a rdf:Statement ; up:attribution _:96242 ; rdf:subject ?pfs35 ; rdf:predicate up:annotation ; rdf:object ?annotation36 . _:96282 a rdf:Statement ; up:source unirule:MF_00225 ; rdf:subject ?pfs43 ; rdf:predicate up:annotation ; rdf:object ?annotation44 . _:96283 a rdf:Statement ; up:attribution _:96243 ; rdf:subject ?pfs43 ; rdf:predicate up:annotation ; rdf:object ?annotation44 . _:96284 a rdf:Statement ; up:source unirule:MF_00225 ; rdf:subject ?pfs49 ; rdf:predicate up:annotation ; rdf:object ?annotation50 . _:96285 a rdf:Statement ; up:attribution _:96244 ; rdf:subject ?pfs49 ; rdf:predicate up:annotation ; rdf:object ?annotation50 . _:96286 a rdf:Statement ; up:source unirule:MF_00225 ; rdf:subject ?pfs57 ; rdf:predicate up:annotation ; rdf:object ?annotation58 . _:96287 a rdf:Statement ; up:attribution _:96245 ; rdf:subject ?pfs57 ; rdf:predicate up:annotation ; rdf:object ?annotation58 . _:96288 a rdf:Statement ; up:source unirule:MF_00225 ; rdf:subject ?pfs64 ; rdf:predicate up:annotation ; rdf:object ?annotation65 . _:96289 a rdf:Statement ; up:attribution _:96246 ; rdf:subject ?pfs64 ; rdf:predicate up:annotation ; rdf:object ?annotation65 . _:96290 a rdf:Statement ; up:source unirule:MF_00225 ; rdf:subject ?pfs71 ; rdf:predicate up:annotation ; rdf:object ?annotation72 . _:96291 a rdf:Statement ; up:attribution _:96247 ; rdf:subject ?pfs71 ; rdf:predicate up:annotation ; rdf:object ?annotation72 . _:96292 a rdf:Statement ; up:source unirule:MF_00225 ; rdf:subject ?pfs78 ; rdf:predicate up:annotation ; rdf:object ?annotation79 . _:96293 a rdf:Statement ; up:attribution _:96248 ; rdf:subject ?pfs78 ; rdf:predicate up:annotation ; rdf:object ?annotation79 . _:96294 a rdf:Statement ; up:source unirule:MF_00225 ; rdf:subject ?pfs86 ; rdf:predicate up:annotation ; rdf:object ?annotation87 . _:96295 a rdf:Statement ; up:attribution _:96249 ; rdf:subject ?pfs86 ; rdf:predicate up:annotation ; rdf:object ?annotation87 . _:96296 a rdf:Statement ; up:source unirule:MF_00225 ; rdf:subject ?pfs94 ; rdf:predicate up:annotation ; rdf:object ?annotation95 . _:96297 a rdf:Statement ; up:attribution _:96250 ; rdf:subject ?pfs94 ; rdf:predicate up:annotation ; rdf:object ?annotation95 . _:96298 a rdf:Statement ; up:source unirule:MF_00225 ; rdf:subject ?pfs101 ; rdf:predicate up:annotation ; rdf:object ?annotation102 . _:96299 a rdf:Statement ; up:attribution _:96251 ; rdf:subject ?pfs101 ; rdf:predicate up:annotation ; rdf:object ?annotation102 . _:96300 a rdf:Statement ; up:source unirule:MF_00225 ; rdf:subject ?pfs108 ; rdf:predicate up:annotation ; rdf:object ?annotation109 . _:96301 a rdf:Statement ; up:attribution _:96252 ; rdf:subject ?pfs108 ; rdf:predicate up:annotation ; rdf:object ?annotation109 . _:96302 a rdf:Statement ; up:source unirule:MF_00225 ; rdf:subject ?pfs115 ; rdf:predicate up:annotation ; rdf:object ?annotation116 . _:96303 a rdf:Statement ; up:attribution _:96253 ; rdf:subject ?pfs115 ; rdf:predicate up:annotation ; rdf:object ?annotation116 . } WHERE { #baseURI: http://purl.uniprot.org/unirule/MF_00225 #Rule MF_00225 Created by:? on:2005-02-28 Modified by:Edouard de Castro on:2024-09-02 VALUES ?supertaxon122 {taxon:2235 taxon:2} ?this up:organism ?thisOrganism ; rdfs:seeAlso signature:MF_00225 . ?thisOrganism rdfs:subClassOf+ ?supertaxon122 . BIND(URI(CONCAT(STR(?this), '#MF_00225a0')) AS ?name0) . BIND(URI(CONCAT(STR(?this), '#MF_00225a1')) AS ?name1) . BIND(URI(CONCAT(STR(?this), '#MF_00225a2')) AS ?name2) . BIND(URI(CONCAT(STR(?this), '#MF_00225a4')) AS ?annotation4) . BIND(URI(CONCAT(STR(?this), '#MF_00225a5')) AS ?annotation5) . BIND(URI(CONCAT(STR(?this), '#MF_00225a7')) AS ?annotation7) . BIND(URI(CONCAT(STR(?this), '#MF_00225a8')) AS ?annotation8) . BIND(URI(CONCAT(STR(?this), '#MF_00225a9')) AS ?annotation9) . BIND(URI(CONCAT(STR(?this), '#MF_00225a10')) AS ?annotation10) . BIND(URI(CONCAT(STR(?this), '#MF_00225a12')) AS ?annotation12) . OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch127 faldo:location ?templateMotifSequenceMatchRegionP0A7E1128 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0A7E1130 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP0A7E1MF_00225123 . ?templateMotifSequenceMatchRegionP0A7E1128 faldo:begin ?templateMotifSequenceMatchBeginP0A7E1129 . ?templateMotifSequenceMatchBeginP0A7E1129 faldo:position ?templateMotifSequenceMatchBeginPositionP0A7E1124 ; faldo:reference isoform:P0A7E1-1 . ?templateMotifSequenceProfileAlignmentOperationP0A7E1130 edam:has_input signature:MF_00225 ; rdf:type edam:operation_0300 . ?targetMotifMatch131 faldo:location ?targetMotifMatchRegionMatch132 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00225134 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP0A7E1MF_00225125 . ?targetMotifMatchRegionMatch132 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00225133 . ?targetMotifMatchRegionMatchBeginMF_00225133 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00225126 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_00225134 edam:has_input signature:MF_00225 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0A7E1MF_00225123, 1, (STRLEN(?templateMotifCigarP0A7E1MF_00225123) - STRLEN(REPLACE(?templateMotifCigarP0A7E1MF_00225123, CONCAT('^(?:-*[^-]){', STR(((62 - ?templateMotifSequenceMatchBeginPositionP0A7E1124) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1135) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0A7E1MF_00225125, 1, (STRLEN(?targetMotifMatchCigarP0A7E1MF_00225125) - STRLEN(REPLACE(?targetMotifMatchCigarP0A7E1MF_00225125, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1135), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0A7E1MF_00225125, 1, (STRLEN(?targetMotifMatchCigarP0A7E1MF_00225125) - STRLEN(REPLACE(?targetMotifMatchCigarP0A7E1MF_00225125, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1135), '}'), '')))), '[^-]', ''))) AS ?step2136) . BIND(((?step2136 + ?targetMotifMatchRegionMatchBeginPositionMF_00225126) - 1) AS ?thisPositionOn18) . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0A7E1MF_00225123, 1, (STRLEN(?templateMotifCigarP0A7E1MF_00225123) - STRLEN(REPLACE(?templateMotifCigarP0A7E1MF_00225123, CONCAT('^(?:-*[^-]){', STR(((66 - ?templateMotifSequenceMatchBeginPositionP0A7E1124) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1137) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0A7E1MF_00225125, 1, (STRLEN(?targetMotifMatchCigarP0A7E1MF_00225125) - STRLEN(REPLACE(?targetMotifMatchCigarP0A7E1MF_00225125, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1137), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0A7E1MF_00225125, 1, (STRLEN(?targetMotifMatchCigarP0A7E1MF_00225125) - STRLEN(REPLACE(?targetMotifMatchCigarP0A7E1MF_00225125, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1137), '}'), '')))), '[^-]', ''))) AS ?step2138) . BIND(((?step2138 + ?targetMotifMatchRegionMatchBeginPositionMF_00225126) - 1) AS ?thisPositionOn19) . BIND(?this AS ?pfs1t139) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn18))) AS ?pfsb15) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn19))) AS ?pfse16) . FILTER (REGEX('[AP][ARNDCQEGHILKMFPSTWYVBZJUOX][ARNDCQEGHILKMFPSTWYVBZJUOX][ARNDCQEGHILKMFPSTWYVBZJUOX]K', SUBSTR(?thisSequenceValue, ?thisPositionOn18, (?thisPositionOn19 - ?thisPositionOn18)))) . BIND(URI(CONCAT(STR(?this), '#MF_00225a14')) AS ?annotation14) . BIND(?this AS ?pfs13) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch144 faldo:location ?templateMotifSequenceMatchRegionP0A7E1145 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0A7E1147 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP0A7E1MF_00225140 . ?templateMotifSequenceMatchRegionP0A7E1145 faldo:begin ?templateMotifSequenceMatchBeginP0A7E1146 . ?templateMotifSequenceMatchBeginP0A7E1146 faldo:position ?templateMotifSequenceMatchBeginPositionP0A7E1141 ; faldo:reference isoform:P0A7E1-1 . ?templateMotifSequenceProfileAlignmentOperationP0A7E1147 edam:has_input signature:MF_00225 ; rdf:type edam:operation_0300 . ?targetMotifMatch148 faldo:location ?targetMotifMatchRegionMatch149 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00225151 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP0A7E1MF_00225142 . ?targetMotifMatchRegionMatch149 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00225150 . ?targetMotifMatchRegionMatchBeginMF_00225150 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00225143 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_00225151 edam:has_input signature:MF_00225 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0A7E1MF_00225140, 1, (STRLEN(?templateMotifCigarP0A7E1MF_00225140) - STRLEN(REPLACE(?templateMotifCigarP0A7E1MF_00225140, CONCAT('^(?:-*[^-]){', STR(((318 - ?templateMotifSequenceMatchBeginPositionP0A7E1141) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1152) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0A7E1MF_00225142, 1, (STRLEN(?targetMotifMatchCigarP0A7E1MF_00225142) - STRLEN(REPLACE(?targetMotifMatchCigarP0A7E1MF_00225142, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1152), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0A7E1MF_00225142, 1, (STRLEN(?targetMotifMatchCigarP0A7E1MF_00225142) - STRLEN(REPLACE(?targetMotifMatchCigarP0A7E1MF_00225142, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1152), '}'), '')))), '[^-]', ''))) AS ?step2153) . BIND(((?step2153 + ?targetMotifMatchRegionMatchBeginPositionMF_00225143) - 1) AS ?thisPositionOn25) . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0A7E1MF_00225140, 1, (STRLEN(?templateMotifCigarP0A7E1MF_00225140) - STRLEN(REPLACE(?templateMotifCigarP0A7E1MF_00225140, CONCAT('^(?:-*[^-]){', STR(((319 - ?templateMotifSequenceMatchBeginPositionP0A7E1141) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1154) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0A7E1MF_00225142, 1, (STRLEN(?targetMotifMatchCigarP0A7E1MF_00225142) - STRLEN(REPLACE(?targetMotifMatchCigarP0A7E1MF_00225142, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1154), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0A7E1MF_00225142, 1, (STRLEN(?targetMotifMatchCigarP0A7E1MF_00225142) - STRLEN(REPLACE(?targetMotifMatchCigarP0A7E1MF_00225142, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1154), '}'), '')))), '[^-]', ''))) AS ?step2155) . BIND(((?step2155 + ?targetMotifMatchRegionMatchBeginPositionMF_00225143) - 1) AS ?thisPositionOn26) . BIND(?this AS ?pfs1t156) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn25))) AS ?pfsb22) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn26))) AS ?pfse23) . FILTER (REGEX('[YF][ST]', SUBSTR(?thisSequenceValue, ?thisPositionOn25, (?thisPositionOn26 - ?thisPositionOn25)))) . BIND(URI(CONCAT(STR(?this), '#MF_00225a21')) AS ?annotation21) . BIND(?this AS ?pfs20) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch161 faldo:location ?templateMotifSequenceMatchRegionP0A7E1162 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0A7E1164 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP0A7E1MF_00225157 . ?templateMotifSequenceMatchRegionP0A7E1162 faldo:begin ?templateMotifSequenceMatchBeginP0A7E1163 . ?templateMotifSequenceMatchBeginP0A7E1163 faldo:position ?templateMotifSequenceMatchBeginPositionP0A7E1158 ; faldo:reference isoform:P0A7E1-1 . ?templateMotifSequenceProfileAlignmentOperationP0A7E1164 edam:has_input signature:MF_00225 ; rdf:type edam:operation_0300 . ?targetMotifMatch165 faldo:location ?targetMotifMatchRegionMatch166 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00225168 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP0A7E1MF_00225159 . ?targetMotifMatchRegionMatch166 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00225167 . ?targetMotifMatchRegionMatchBeginMF_00225167 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00225160 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_00225168 edam:has_input signature:MF_00225 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0A7E1MF_00225157, 1, (STRLEN(?templateMotifCigarP0A7E1MF_00225157) - STRLEN(REPLACE(?templateMotifCigarP0A7E1MF_00225157, CONCAT('^(?:-*[^-]){', STR(((111 - ?templateMotifSequenceMatchBeginPositionP0A7E1158) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1169) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0A7E1MF_00225159, 1, (STRLEN(?targetMotifMatchCigarP0A7E1MF_00225159) - STRLEN(REPLACE(?targetMotifMatchCigarP0A7E1MF_00225159, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1169), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0A7E1MF_00225159, 1, (STRLEN(?targetMotifMatchCigarP0A7E1MF_00225159) - STRLEN(REPLACE(?targetMotifMatchCigarP0A7E1MF_00225159, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1169), '}'), '')))), '[^-]', ''))) AS ?step2170) . BIND(((?step2170 + ?targetMotifMatchRegionMatchBeginPositionMF_00225160) - 1) AS ?thisPositionOn33) . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0A7E1MF_00225157, 1, (STRLEN(?templateMotifCigarP0A7E1MF_00225157) - STRLEN(REPLACE(?templateMotifCigarP0A7E1MF_00225157, CONCAT('^(?:-*[^-]){', STR(((115 - ?templateMotifSequenceMatchBeginPositionP0A7E1158) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1171) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0A7E1MF_00225159, 1, (STRLEN(?targetMotifMatchCigarP0A7E1MF_00225159) - STRLEN(REPLACE(?targetMotifMatchCigarP0A7E1MF_00225159, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1171), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0A7E1MF_00225159, 1, (STRLEN(?targetMotifMatchCigarP0A7E1MF_00225159) - STRLEN(REPLACE(?targetMotifMatchCigarP0A7E1MF_00225159, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1171), '}'), '')))), '[^-]', ''))) AS ?step2172) . BIND(((?step2172 + ?targetMotifMatchRegionMatchBeginPositionMF_00225160) - 1) AS ?thisPositionOn34) . BIND(?this AS ?pfs1t173) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn33))) AS ?pfsb29) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn34))) AS ?pfse30) . FILTER (REGEX('N[ARNDCQEGHILKMFPSTWYVBZJUOX][MYLFN]G[FL]', SUBSTR(?thisSequenceValue, ?thisPositionOn33, (?thisPositionOn34 - ?thisPositionOn33)))) . BIND(URI(CONCAT(STR(?this), '#MF_00225a28')) AS ?annotation28) . BIND(?this AS ?pfs27) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch178 faldo:location ?templateMotifSequenceMatchRegionP0A7E1179 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0A7E1181 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP0A7E1MF_00225174 . ?templateMotifSequenceMatchRegionP0A7E1179 faldo:begin ?templateMotifSequenceMatchBeginP0A7E1180 . ?templateMotifSequenceMatchBeginP0A7E1180 faldo:position ?templateMotifSequenceMatchBeginPositionP0A7E1175 ; faldo:reference isoform:P0A7E1-1 . ?templateMotifSequenceProfileAlignmentOperationP0A7E1181 edam:has_input signature:MF_00225 ; rdf:type edam:operation_0300 . ?targetMotifMatch182 faldo:location ?targetMotifMatchRegionMatch183 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00225185 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP0A7E1MF_00225176 . ?targetMotifMatchRegionMatch183 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00225184 . ?targetMotifMatchRegionMatchBeginMF_00225184 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00225177 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_00225185 edam:has_input signature:MF_00225 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0A7E1MF_00225174, 1, (STRLEN(?templateMotifCigarP0A7E1MF_00225174) - STRLEN(REPLACE(?templateMotifCigarP0A7E1MF_00225174, CONCAT('^(?:-*[^-]){', STR(((246 - ?templateMotifSequenceMatchBeginPositionP0A7E1175) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1186) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0A7E1MF_00225176, 1, (STRLEN(?targetMotifMatchCigarP0A7E1MF_00225176) - STRLEN(REPLACE(?targetMotifMatchCigarP0A7E1MF_00225176, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1186), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0A7E1MF_00225176, 1, (STRLEN(?targetMotifMatchCigarP0A7E1MF_00225176) - STRLEN(REPLACE(?targetMotifMatchCigarP0A7E1MF_00225176, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1186), '}'), '')))), '[^-]', ''))) AS ?step2187) . BIND(((?step2187 + ?targetMotifMatchRegionMatchBeginPositionMF_00225177) - 1) AS ?thisPositionOn41) . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0A7E1MF_00225174, 1, (STRLEN(?templateMotifCigarP0A7E1MF_00225174) - STRLEN(REPLACE(?templateMotifCigarP0A7E1MF_00225174, CONCAT('^(?:-*[^-]){', STR(((247 - ?templateMotifSequenceMatchBeginPositionP0A7E1175) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1188) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0A7E1MF_00225176, 1, (STRLEN(?targetMotifMatchCigarP0A7E1MF_00225176) - STRLEN(REPLACE(?targetMotifMatchCigarP0A7E1MF_00225176, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1188), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0A7E1MF_00225176, 1, (STRLEN(?targetMotifMatchCigarP0A7E1MF_00225176) - STRLEN(REPLACE(?targetMotifMatchCigarP0A7E1MF_00225176, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1188), '}'), '')))), '[^-]', ''))) AS ?step2189) . BIND(((?step2189 + ?targetMotifMatchRegionMatchBeginPositionMF_00225177) - 1) AS ?thisPositionOn42) . BIND(?this AS ?pfs1t190) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn41))) AS ?pfsb37) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn42))) AS ?pfse38) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn41, (?thisPositionOn42 - ?thisPositionOn41)) = 'NT')) . BIND(URI(CONCAT(STR(?this), '#MF_00225a36')) AS ?annotation36) . BIND(?this AS ?pfs35) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch195 faldo:location ?templateMotifSequenceMatchRegionP0A7E1196 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0A7E1198 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP0A7E1MF_00225191 . ?templateMotifSequenceMatchRegionP0A7E1196 faldo:begin ?templateMotifSequenceMatchBeginP0A7E1197 . ?templateMotifSequenceMatchBeginP0A7E1197 faldo:position ?templateMotifSequenceMatchBeginPositionP0A7E1192 ; faldo:reference isoform:P0A7E1-1 . ?templateMotifSequenceProfileAlignmentOperationP0A7E1198 edam:has_input signature:MF_00225 ; rdf:type edam:operation_0300 . ?targetMotifMatch199 faldo:location ?targetMotifMatchRegionMatch200 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00225202 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP0A7E1MF_00225193 . ?targetMotifMatchRegionMatch200 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00225201 . ?targetMotifMatchRegionMatchBeginMF_00225201 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00225194 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_00225202 edam:has_input signature:MF_00225 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0A7E1MF_00225191, 1, (STRLEN(?templateMotifCigarP0A7E1MF_00225191) - STRLEN(REPLACE(?templateMotifCigarP0A7E1MF_00225191, CONCAT('^(?:-*[^-]){', STR(((175 - ?templateMotifSequenceMatchBeginPositionP0A7E1192) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1203) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0A7E1MF_00225193, 1, (STRLEN(?targetMotifMatchCigarP0A7E1MF_00225193) - STRLEN(REPLACE(?targetMotifMatchCigarP0A7E1MF_00225193, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1203), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0A7E1MF_00225193, 1, (STRLEN(?targetMotifMatchCigarP0A7E1MF_00225193) - STRLEN(REPLACE(?targetMotifMatchCigarP0A7E1MF_00225193, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1203), '}'), '')))), '[^-]', ''))) AS ?step2204) . BIND(((?step2204 + ?targetMotifMatchRegionMatchBeginPositionMF_00225194) - 1) AS ?thisPositionOn47) . BIND(?thisPositionOn47 AS ?thisPositionOn48) . BIND(?this AS ?pfs1t205) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn47))) AS ?pfsb45) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn48))) AS ?pfse46) . FILTER (REGEX('[SC]', SUBSTR(?thisSequenceValue, ?thisPositionOn47, 1))) . BIND(URI(CONCAT(STR(?this), '#MF_00225a44')) AS ?annotation44) . BIND(?this AS ?pfs43) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch210 faldo:location ?templateMotifSequenceMatchRegionP0A7E1211 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0A7E1213 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP0A7E1MF_00225206 . ?templateMotifSequenceMatchRegionP0A7E1211 faldo:begin ?templateMotifSequenceMatchBeginP0A7E1212 . ?templateMotifSequenceMatchBeginP0A7E1212 faldo:position ?templateMotifSequenceMatchBeginPositionP0A7E1207 ; faldo:reference isoform:P0A7E1-1 . ?templateMotifSequenceProfileAlignmentOperationP0A7E1213 edam:has_input signature:MF_00225 ; rdf:type edam:operation_0300 . ?targetMotifMatch214 faldo:location ?targetMotifMatchRegionMatch215 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00225217 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP0A7E1MF_00225208 . ?targetMotifMatchRegionMatch215 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00225216 . ?targetMotifMatchRegionMatchBeginMF_00225216 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00225209 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_00225217 edam:has_input signature:MF_00225 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0A7E1MF_00225206, 1, (STRLEN(?templateMotifCigarP0A7E1MF_00225206) - STRLEN(REPLACE(?templateMotifCigarP0A7E1MF_00225206, CONCAT('^(?:-*[^-]){', STR(((66 - ?templateMotifSequenceMatchBeginPositionP0A7E1207) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1218) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0A7E1MF_00225208, 1, (STRLEN(?targetMotifMatchCigarP0A7E1MF_00225208) - STRLEN(REPLACE(?targetMotifMatchCigarP0A7E1MF_00225208, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1218), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0A7E1MF_00225208, 1, (STRLEN(?targetMotifMatchCigarP0A7E1MF_00225208) - STRLEN(REPLACE(?targetMotifMatchCigarP0A7E1MF_00225208, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1218), '}'), '')))), '[^-]', ''))) AS ?step2219) . BIND(((?step2219 + ?targetMotifMatchRegionMatchBeginPositionMF_00225209) - 1) AS ?thisPositionOn55) . BIND(?thisPositionOn55 AS ?thisPositionOn56) . BIND(?this AS ?pfs1t220) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn55))) AS ?pfsb51) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn56))) AS ?pfse52) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn55, 1) = 'K')) . BIND(URI(CONCAT(STR(?this), '#MF_00225a50')) AS ?annotation50) . BIND(?this AS ?pfs49) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch225 faldo:location ?templateMotifSequenceMatchRegionP0A7E1226 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0A7E1228 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP0A7E1MF_00225221 . ?templateMotifSequenceMatchRegionP0A7E1226 faldo:begin ?templateMotifSequenceMatchBeginP0A7E1227 . ?templateMotifSequenceMatchBeginP0A7E1227 faldo:position ?templateMotifSequenceMatchBeginPositionP0A7E1222 ; faldo:reference isoform:P0A7E1-1 . ?templateMotifSequenceProfileAlignmentOperationP0A7E1228 edam:has_input signature:MF_00225 ; rdf:type edam:operation_0300 . ?targetMotifMatch229 faldo:location ?targetMotifMatchRegionMatch230 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00225232 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP0A7E1MF_00225223 . ?targetMotifMatchRegionMatch230 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00225231 . ?targetMotifMatchRegionMatchBeginMF_00225231 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00225224 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_00225232 edam:has_input signature:MF_00225 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0A7E1MF_00225221, 1, (STRLEN(?templateMotifCigarP0A7E1MF_00225221) - STRLEN(REPLACE(?templateMotifCigarP0A7E1MF_00225221, CONCAT('^(?:-*[^-]){', STR(((86 - ?templateMotifSequenceMatchBeginPositionP0A7E1222) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1233) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0A7E1MF_00225223, 1, (STRLEN(?targetMotifMatchCigarP0A7E1MF_00225223) - STRLEN(REPLACE(?targetMotifMatchCigarP0A7E1MF_00225223, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1233), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0A7E1MF_00225223, 1, (STRLEN(?targetMotifMatchCigarP0A7E1MF_00225223) - STRLEN(REPLACE(?targetMotifMatchCigarP0A7E1MF_00225223, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1233), '}'), '')))), '[^-]', ''))) AS ?step2234) . BIND(((?step2234 + ?targetMotifMatchRegionMatchBeginPositionMF_00225224) - 1) AS ?thisPositionOn62) . BIND(?thisPositionOn62 AS ?thisPositionOn63) . BIND(?this AS ?pfs1t235) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn62))) AS ?pfsb59) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn63))) AS ?pfse60) . FILTER (REGEX('[TASG]', SUBSTR(?thisSequenceValue, ?thisPositionOn62, 1))) . BIND(URI(CONCAT(STR(?this), '#MF_00225a58')) AS ?annotation58) . BIND(?this AS ?pfs57) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch240 faldo:location ?templateMotifSequenceMatchRegionP0A7E1241 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0A7E1243 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP0A7E1MF_00225236 . ?templateMotifSequenceMatchRegionP0A7E1241 faldo:begin ?templateMotifSequenceMatchBeginP0A7E1242 . ?templateMotifSequenceMatchBeginP0A7E1242 faldo:position ?templateMotifSequenceMatchBeginPositionP0A7E1237 ; faldo:reference isoform:P0A7E1-1 . ?templateMotifSequenceProfileAlignmentOperationP0A7E1243 edam:has_input signature:MF_00225 ; rdf:type edam:operation_0300 . ?targetMotifMatch244 faldo:location ?targetMotifMatchRegionMatch245 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00225247 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP0A7E1MF_00225238 . ?targetMotifMatchRegionMatch245 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00225246 . ?targetMotifMatchRegionMatchBeginMF_00225246 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00225239 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_00225247 edam:has_input signature:MF_00225 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0A7E1MF_00225236, 1, (STRLEN(?templateMotifCigarP0A7E1MF_00225236) - STRLEN(REPLACE(?templateMotifCigarP0A7E1MF_00225236, CONCAT('^(?:-*[^-]){', STR(((139 - ?templateMotifSequenceMatchBeginPositionP0A7E1237) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1248) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0A7E1MF_00225238, 1, (STRLEN(?targetMotifMatchCigarP0A7E1MF_00225238) - STRLEN(REPLACE(?targetMotifMatchCigarP0A7E1MF_00225238, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1248), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0A7E1MF_00225238, 1, (STRLEN(?targetMotifMatchCigarP0A7E1MF_00225238) - STRLEN(REPLACE(?targetMotifMatchCigarP0A7E1MF_00225238, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1248), '}'), '')))), '[^-]', ''))) AS ?step2249) . BIND(((?step2249 + ?targetMotifMatchRegionMatchBeginPositionMF_00225239) - 1) AS ?thisPositionOn69) . BIND(?thisPositionOn69 AS ?thisPositionOn70) . BIND(?this AS ?pfs1t250) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn69))) AS ?pfsb66) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn70))) AS ?pfse67) . FILTER (REGEX('[NS]', SUBSTR(?thisSequenceValue, ?thisPositionOn69, 1))) . BIND(URI(CONCAT(STR(?this), '#MF_00225a65')) AS ?annotation65) . BIND(?this AS ?pfs64) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch255 faldo:location ?templateMotifSequenceMatchRegionP0A7E1256 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0A7E1258 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP0A7E1MF_00225251 . ?templateMotifSequenceMatchRegionP0A7E1256 faldo:begin ?templateMotifSequenceMatchBeginP0A7E1257 . ?templateMotifSequenceMatchBeginP0A7E1257 faldo:position ?templateMotifSequenceMatchBeginPositionP0A7E1252 ; faldo:reference isoform:P0A7E1-1 . ?templateMotifSequenceProfileAlignmentOperationP0A7E1258 edam:has_input signature:MF_00225 ; rdf:type edam:operation_0300 . ?targetMotifMatch259 faldo:location ?targetMotifMatchRegionMatch260 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00225262 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP0A7E1MF_00225253 . ?targetMotifMatchRegionMatch260 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00225261 . ?targetMotifMatchRegionMatchBeginMF_00225261 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00225254 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_00225262 edam:has_input signature:MF_00225 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0A7E1MF_00225251, 1, (STRLEN(?templateMotifCigarP0A7E1MF_00225251) - STRLEN(REPLACE(?templateMotifCigarP0A7E1MF_00225251, CONCAT('^(?:-*[^-]){', STR(((172 - ?templateMotifSequenceMatchBeginPositionP0A7E1252) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1263) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0A7E1MF_00225253, 1, (STRLEN(?targetMotifMatchCigarP0A7E1MF_00225253) - STRLEN(REPLACE(?targetMotifMatchCigarP0A7E1MF_00225253, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1263), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0A7E1MF_00225253, 1, (STRLEN(?targetMotifMatchCigarP0A7E1MF_00225253) - STRLEN(REPLACE(?targetMotifMatchCigarP0A7E1MF_00225253, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1263), '}'), '')))), '[^-]', ''))) AS ?step2264) . BIND(((?step2264 + ?targetMotifMatchRegionMatchBeginPositionMF_00225254) - 1) AS ?thisPositionOn76) . BIND(?thisPositionOn76 AS ?thisPositionOn77) . BIND(?this AS ?pfs1t265) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn76))) AS ?pfsb73) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn77))) AS ?pfse74) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn76, 1) = 'N')) . BIND(URI(CONCAT(STR(?this), '#MF_00225a72')) AS ?annotation72) . BIND(?this AS ?pfs71) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch270 faldo:location ?templateMotifSequenceMatchRegionP0A7E1271 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0A7E1273 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP0A7E1MF_00225266 . ?templateMotifSequenceMatchRegionP0A7E1271 faldo:begin ?templateMotifSequenceMatchBeginP0A7E1272 . ?templateMotifSequenceMatchBeginP0A7E1272 faldo:position ?templateMotifSequenceMatchBeginPositionP0A7E1267 ; faldo:reference isoform:P0A7E1-1 . ?templateMotifSequenceProfileAlignmentOperationP0A7E1273 edam:has_input signature:MF_00225 ; rdf:type edam:operation_0300 . ?targetMotifMatch274 faldo:location ?targetMotifMatchRegionMatch275 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00225277 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP0A7E1MF_00225268 . ?targetMotifMatchRegionMatch275 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00225276 . ?targetMotifMatchRegionMatchBeginMF_00225276 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00225269 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_00225277 edam:has_input signature:MF_00225 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0A7E1MF_00225266, 1, (STRLEN(?templateMotifCigarP0A7E1MF_00225266) - STRLEN(REPLACE(?templateMotifCigarP0A7E1MF_00225266, CONCAT('^(?:-*[^-]){', STR(((172 - ?templateMotifSequenceMatchBeginPositionP0A7E1267) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1278) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0A7E1MF_00225268, 1, (STRLEN(?targetMotifMatchCigarP0A7E1MF_00225268) - STRLEN(REPLACE(?targetMotifMatchCigarP0A7E1MF_00225268, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1278), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0A7E1MF_00225268, 1, (STRLEN(?targetMotifMatchCigarP0A7E1MF_00225268) - STRLEN(REPLACE(?targetMotifMatchCigarP0A7E1MF_00225268, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1278), '}'), '')))), '[^-]', ''))) AS ?step2279) . BIND(((?step2279 + ?targetMotifMatchRegionMatchBeginPositionMF_00225269) - 1) AS ?thisPositionOn84) . BIND(?thisPositionOn84 AS ?thisPositionOn85) . BIND(?this AS ?pfs1t280) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn84))) AS ?pfsb80) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn85))) AS ?pfse81) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn84, 1) = 'N')) . BIND(URI(CONCAT(STR(?this), '#MF_00225a79')) AS ?annotation79) . BIND(?this AS ?pfs78) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch285 faldo:location ?templateMotifSequenceMatchRegionP0A7E1286 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0A7E1288 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP0A7E1MF_00225281 . ?templateMotifSequenceMatchRegionP0A7E1286 faldo:begin ?templateMotifSequenceMatchBeginP0A7E1287 . ?templateMotifSequenceMatchBeginP0A7E1287 faldo:position ?templateMotifSequenceMatchBeginPositionP0A7E1282 ; faldo:reference isoform:P0A7E1-1 . ?templateMotifSequenceProfileAlignmentOperationP0A7E1288 edam:has_input signature:MF_00225 ; rdf:type edam:operation_0300 . ?targetMotifMatch289 faldo:location ?targetMotifMatchRegionMatch290 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00225292 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP0A7E1MF_00225283 . ?targetMotifMatchRegionMatch290 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00225291 . ?targetMotifMatchRegionMatchBeginMF_00225291 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00225284 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_00225292 edam:has_input signature:MF_00225 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0A7E1MF_00225281, 1, (STRLEN(?templateMotifCigarP0A7E1MF_00225281) - STRLEN(REPLACE(?templateMotifCigarP0A7E1MF_00225281, CONCAT('^(?:-*[^-]){', STR(((177 - ?templateMotifSequenceMatchBeginPositionP0A7E1282) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1293) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0A7E1MF_00225283, 1, (STRLEN(?targetMotifMatchCigarP0A7E1MF_00225283) - STRLEN(REPLACE(?targetMotifMatchCigarP0A7E1MF_00225283, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1293), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0A7E1MF_00225283, 1, (STRLEN(?targetMotifMatchCigarP0A7E1MF_00225283) - STRLEN(REPLACE(?targetMotifMatchCigarP0A7E1MF_00225283, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1293), '}'), '')))), '[^-]', ''))) AS ?step2294) . BIND(((?step2294 + ?targetMotifMatchRegionMatchBeginPositionMF_00225284) - 1) AS ?thisPositionOn92) . BIND(?thisPositionOn92 AS ?thisPositionOn93) . BIND(?this AS ?pfs1t295) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn92))) AS ?pfsb88) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn93))) AS ?pfse89) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn92, 1) = 'N')) . BIND(URI(CONCAT(STR(?this), '#MF_00225a87')) AS ?annotation87) . BIND(?this AS ?pfs86) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch300 faldo:location ?templateMotifSequenceMatchRegionP0A7E1301 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0A7E1303 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP0A7E1MF_00225296 . ?templateMotifSequenceMatchRegionP0A7E1301 faldo:begin ?templateMotifSequenceMatchBeginP0A7E1302 . ?templateMotifSequenceMatchBeginP0A7E1302 faldo:position ?templateMotifSequenceMatchBeginPositionP0A7E1297 ; faldo:reference isoform:P0A7E1-1 . ?templateMotifSequenceProfileAlignmentOperationP0A7E1303 edam:has_input signature:MF_00225 ; rdf:type edam:operation_0300 . ?targetMotifMatch304 faldo:location ?targetMotifMatchRegionMatch305 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00225307 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP0A7E1MF_00225298 . ?targetMotifMatchRegionMatch305 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00225306 . ?targetMotifMatchRegionMatchBeginMF_00225306 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00225299 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_00225307 edam:has_input signature:MF_00225 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0A7E1MF_00225296, 1, (STRLEN(?templateMotifCigarP0A7E1MF_00225296) - STRLEN(REPLACE(?templateMotifCigarP0A7E1MF_00225296, CONCAT('^(?:-*[^-]){', STR(((217 - ?templateMotifSequenceMatchBeginPositionP0A7E1297) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1308) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0A7E1MF_00225298, 1, (STRLEN(?targetMotifMatchCigarP0A7E1MF_00225298) - STRLEN(REPLACE(?targetMotifMatchCigarP0A7E1MF_00225298, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1308), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0A7E1MF_00225298, 1, (STRLEN(?targetMotifMatchCigarP0A7E1MF_00225298) - STRLEN(REPLACE(?targetMotifMatchCigarP0A7E1MF_00225298, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1308), '}'), '')))), '[^-]', ''))) AS ?step2309) . BIND(((?step2309 + ?targetMotifMatchRegionMatchBeginPositionMF_00225299) - 1) AS ?thisPositionOn99) . BIND(?thisPositionOn99 AS ?thisPositionOn100) . BIND(?this AS ?pfs1t310) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn99))) AS ?pfsb96) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn100))) AS ?pfse97) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn99, 1) = 'K')) . BIND(URI(CONCAT(STR(?this), '#MF_00225a95')) AS ?annotation95) . BIND(?this AS ?pfs94) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch315 faldo:location ?templateMotifSequenceMatchRegionP0A7E1316 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0A7E1318 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP0A7E1MF_00225311 . ?templateMotifSequenceMatchRegionP0A7E1316 faldo:begin ?templateMotifSequenceMatchBeginP0A7E1317 . ?templateMotifSequenceMatchBeginP0A7E1317 faldo:position ?templateMotifSequenceMatchBeginPositionP0A7E1312 ; faldo:reference isoform:P0A7E1-1 . ?templateMotifSequenceProfileAlignmentOperationP0A7E1318 edam:has_input signature:MF_00225 ; rdf:type edam:operation_0300 . ?targetMotifMatch319 faldo:location ?targetMotifMatchRegionMatch320 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00225322 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP0A7E1MF_00225313 . ?targetMotifMatchRegionMatch320 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00225321 . ?targetMotifMatchRegionMatchBeginMF_00225321 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00225314 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_00225322 edam:has_input signature:MF_00225 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0A7E1MF_00225311, 1, (STRLEN(?templateMotifCigarP0A7E1MF_00225311) - STRLEN(REPLACE(?templateMotifCigarP0A7E1MF_00225311, CONCAT('^(?:-*[^-]){', STR(((245 - ?templateMotifSequenceMatchBeginPositionP0A7E1312) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1323) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0A7E1MF_00225313, 1, (STRLEN(?targetMotifMatchCigarP0A7E1MF_00225313) - STRLEN(REPLACE(?targetMotifMatchCigarP0A7E1MF_00225313, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1323), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0A7E1MF_00225313, 1, (STRLEN(?targetMotifMatchCigarP0A7E1MF_00225313) - STRLEN(REPLACE(?targetMotifMatchCigarP0A7E1MF_00225313, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1323), '}'), '')))), '[^-]', ''))) AS ?step2324) . BIND(((?step2324 + ?targetMotifMatchRegionMatchBeginPositionMF_00225314) - 1) AS ?thisPositionOn106) . BIND(?thisPositionOn106 AS ?thisPositionOn107) . BIND(?this AS ?pfs1t325) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn106))) AS ?pfsb103) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn107))) AS ?pfse104) . FILTER (REGEX('[TASGV]', SUBSTR(?thisSequenceValue, ?thisPositionOn106, 1))) . BIND(URI(CONCAT(STR(?this), '#MF_00225a102')) AS ?annotation102) . BIND(?this AS ?pfs101) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch330 faldo:location ?templateMotifSequenceMatchRegionP0A7E1331 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0A7E1333 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP0A7E1MF_00225326 . ?templateMotifSequenceMatchRegionP0A7E1331 faldo:begin ?templateMotifSequenceMatchBeginP0A7E1332 . ?templateMotifSequenceMatchBeginP0A7E1332 faldo:position ?templateMotifSequenceMatchBeginPositionP0A7E1327 ; faldo:reference isoform:P0A7E1-1 . ?templateMotifSequenceProfileAlignmentOperationP0A7E1333 edam:has_input signature:MF_00225 ; rdf:type edam:operation_0300 . ?targetMotifMatch334 faldo:location ?targetMotifMatchRegionMatch335 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00225337 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP0A7E1MF_00225328 . ?targetMotifMatchRegionMatch335 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00225336 . ?targetMotifMatchRegionMatchBeginMF_00225336 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00225329 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_00225337 edam:has_input signature:MF_00225 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0A7E1MF_00225326, 1, (STRLEN(?templateMotifCigarP0A7E1MF_00225326) - STRLEN(REPLACE(?templateMotifCigarP0A7E1MF_00225326, CONCAT('^(?:-*[^-]){', STR(((268 - ?templateMotifSequenceMatchBeginPositionP0A7E1327) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1338) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0A7E1MF_00225328, 1, (STRLEN(?targetMotifMatchCigarP0A7E1MF_00225328) - STRLEN(REPLACE(?targetMotifMatchCigarP0A7E1MF_00225328, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1338), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0A7E1MF_00225328, 1, (STRLEN(?targetMotifMatchCigarP0A7E1MF_00225328) - STRLEN(REPLACE(?targetMotifMatchCigarP0A7E1MF_00225328, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1338), '}'), '')))), '[^-]', ''))) AS ?step2339) . BIND(((?step2339 + ?targetMotifMatchRegionMatchBeginPositionMF_00225329) - 1) AS ?thisPositionOn113) . BIND(?thisPositionOn113 AS ?thisPositionOn114) . BIND(?this AS ?pfs1t340) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn113))) AS ?pfsb110) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn114))) AS ?pfse111) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn113, 1) = 'G')) . BIND(URI(CONCAT(STR(?this), '#MF_00225a109')) AS ?annotation109) . BIND(?this AS ?pfs108) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch345 faldo:location ?templateMotifSequenceMatchRegionP0A7E1346 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0A7E1348 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP0A7E1MF_00225341 . ?templateMotifSequenceMatchRegionP0A7E1346 faldo:begin ?templateMotifSequenceMatchBeginP0A7E1347 . ?templateMotifSequenceMatchBeginP0A7E1347 faldo:position ?templateMotifSequenceMatchBeginPositionP0A7E1342 ; faldo:reference isoform:P0A7E1-1 . ?templateMotifSequenceProfileAlignmentOperationP0A7E1348 edam:has_input signature:MF_00225 ; rdf:type edam:operation_0300 . ?targetMotifMatch349 faldo:location ?targetMotifMatchRegionMatch350 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00225352 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP0A7E1MF_00225343 . ?targetMotifMatchRegionMatch350 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00225351 . ?targetMotifMatchRegionMatchBeginMF_00225351 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00225344 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_00225352 edam:has_input signature:MF_00225 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0A7E1MF_00225341, 1, (STRLEN(?templateMotifCigarP0A7E1MF_00225341) - STRLEN(REPLACE(?templateMotifCigarP0A7E1MF_00225341, CONCAT('^(?:-*[^-]){', STR(((297 - ?templateMotifSequenceMatchBeginPositionP0A7E1342) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1353) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0A7E1MF_00225343, 1, (STRLEN(?targetMotifMatchCigarP0A7E1MF_00225343) - STRLEN(REPLACE(?targetMotifMatchCigarP0A7E1MF_00225343, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1353), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0A7E1MF_00225343, 1, (STRLEN(?targetMotifMatchCigarP0A7E1MF_00225343) - STRLEN(REPLACE(?targetMotifMatchCigarP0A7E1MF_00225343, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1353), '}'), '')))), '[^-]', ''))) AS ?step2354) . BIND(((?step2354 + ?targetMotifMatchRegionMatchBeginPositionMF_00225344) - 1) AS ?thisPositionOn120) . BIND(?thisPositionOn120 AS ?thisPositionOn121) . BIND(?this AS ?pfs1t355) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn120))) AS ?pfsb117) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn121))) AS ?pfse118) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn120, 1) = 'G')) . BIND(URI(CONCAT(STR(?this), '#MF_00225a116')) AS ?annotation116) . BIND(?this AS ?pfs115) . } }