CONSTRUCT { _:120810 up:source unirule:MF_00296 . _:120811 up:source unirule:MF_00296 . _:120812 up:source unirule:MF_00296 . _:120813 up:source unirule:MF_00296 . _:120814 up:source unirule:MF_00296 . _:120815 up:source unirule:MF_00296 . _:120816 up:source unirule:MF_00296 . _:120817 up:source unirule:MF_00296 . _:120818 up:source unirule:MF_00296 . _:120819 up:source unirule:MF_00296 . _:120820 up:source unirule:MF_00296 . _:120821 up:source unirule:MF_00296 . _:120822 up:source unirule:MF_00296 . _:120823 up:source unirule:MF_00296 . _:120824 up:source unirule:MF_00296 . _:120825 up:source unirule:MF_00296 . _:120826 up:source unirule:MF_00296 . _:120827 up:source unirule:MF_00296 . _:120828 up:source unirule:MF_00296 . _:120829 up:source unirule:MF_00296 . _:120830 up:source unirule:MF_00296 . _:120831 up:source unirule:MF_00296 . _:120832 up:source unirule:MF_00296 . _:120833 up:source unirule:MF_00296 . _:120834 up:source unirule:MF_00296 . _:120835 up:source unirule:MF_00296 . _:120836 up:source unirule:MF_00296 . _:120837 up:source unirule:MF_00296 . _:120838 up:source unirule:MF_00296 . _:120839 up:source unirule:MF_00296 . _:120840 up:source unirule:MF_00296 . _:120841 up:source unirule:MF_00296 . _:120842 up:source unirule:MF_00296 . _:120843 up:source unirule:MF_00296 . ?this up:annotation ?annotation0 , ?annotation1 , ?annotation3 ; up:classifiedWith GO:0005737 , keyword:12 , keyword:28 , keyword:808 , keyword:963 . ?annotation0 a up:Subunit_Annotation ; rdfs:comment 'Homodimer.' . ?annotation1 a up:Subcellular_Location_Annotation . ?annotation1li2 up:cellularComponent <http://purl.uniprot.org/locations/null>. ?annotation3 a up:Similarity_Annotation ; rdfs:comment 'Belongs to the AB hydrolase superfamily. MetX family.' . ?case4 up:alternativeName ?name6 ; up:recommendedName ?name5 . ?name5 up:ecName '2.3.1.46' ; up:fullName 'Homoserine O-succinyltransferase' ; up:shortName 'HST' ; rdf:type up:Structured_Name . ?name6 up:fullName 'Homoserine transsuccinylase' ; up:shortName 'HTS' ; rdf:type up:Structured_Name . ?case7 up:alternativeName ?name9 ; up:classifiedWith GO:0004414 , GO:0009086 , keyword:486 ; up:recommendedName ?name8 . ?name8 up:ecName '2.3.1.31' ; up:fullName 'Homoserine O-acetyltransferase' ; up:shortName 'HAT' ; rdf:type up:Structured_Name . ?name9 up:fullName 'Homoserine transacetylase' ; up:shortName 'HTA' ; rdf:type up:Structured_Name . ?case10 up:recommendedName ?name11 . ?name11 up:ecName '2.3.1.-' ; up:fullName 'Probable acyltransferase' ; rdf:type up:Structured_Name . ?case12 up:alternativeName ?name14 ; up:recommendedName ?name13 . ?name13 up:ecName '2.3.1.46' ; up:fullName 'Homoserine O-succinyltransferase' ; up:shortName 'HST' ; rdf:type up:Structured_Name . ?name14 up:fullName 'Homoserine transsuccinylase' ; up:shortName 'HTS' ; rdf:type up:Structured_Name . ?case15 up:classifiedWith GO:0006535 , GO:0016750 , keyword:198 ; up:recommendedName ?name16 . ?name16 up:ecName '2.3.1.-' ; up:fullName 'Serine O-succinyltransferase' ; up:shortName 'SST' ; rdf:type up:Structured_Name . ?case17 up:classifiedWith GO:0008899 , GO:0009086 , keyword:486 . ?pfs18 up:annotation ?annotation19 . ?annotation19 faldo:begin ?pfsb20 ; faldo:end ?pfse21 ; rdf:type up:Site_Annotation ; rdfs:comment 'Important for substrate specificity' . ?pfsb20 faldo:position ?thisPositionOn22 ; rdf:type faldo:ExactPosition . ?pfse21 faldo:position ?thisPositionOn23 ; rdf:type faldo:ExactPosition . ?pfs24 up:annotation ?annotation25 . ?annotation25 faldo:begin ?pfsb26 ; faldo:end ?pfse27 ; rdf:type up:Region_Annotation ; rdfs:comment 'Important for substrate specificity' . ?pfsb26 faldo:position ?thisPositionOn28 ; rdf:type faldo:ExactPosition . ?pfse27 faldo:position ?thisPositionOn29 ; rdf:type faldo:ExactPosition . ?pfs30 up:annotation ?annotation31 . ?annotation31 faldo:begin ?pfsb32 ; faldo:end ?pfse33 ; rdf:type up:Site_Annotation ; rdfs:comment 'Important for acyl-CoA specificity' . ?pfsb32 faldo:position ?thisPositionOn34 ; rdf:type faldo:ExactPosition . ?pfse33 faldo:position ?thisPositionOn35 ; rdf:type faldo:ExactPosition . ?pfs36 up:annotation ?annotation37 . ?annotation37 faldo:begin ?pfsb38 ; faldo:end ?pfse39 ; rdf:type up:Site_Annotation ; rdfs:comment 'Important for acyl-CoA specificity' . ?pfsb38 faldo:position ?thisPositionOn40 ; rdf:type faldo:ExactPosition . ?pfse39 faldo:position ?thisPositionOn41 ; rdf:type faldo:ExactPosition . ?pfs42 up:annotation ?annotation43 , ?annotation48 , ?annotation53 , ?annotation60 . ?annotation43 faldo:begin ?pfsb44 ; faldo:end ?pfse45 ; rdf:type up:Active_Site_Annotation ; rdfs:comment 'Nucleophile' . ?pfsb44 faldo:position ?thisPositionOn46 ; rdf:type faldo:ExactPosition . ?pfse45 faldo:position ?thisPositionOn47 ; rdf:type faldo:ExactPosition . ?annotation48 faldo:begin ?pfsb49 ; faldo:end ?pfse50 ; rdf:type up:Active_Site_Annotation . ?pfsb49 faldo:position ?thisPositionOn51 ; rdf:type faldo:ExactPosition . ?pfse50 faldo:position ?thisPositionOn52 ; rdf:type faldo:ExactPosition . ?annotation53 faldo:begin ?pfsb54 ; faldo:end ?pfse55 ; up:ligand ?ligand56 ; rdf:type up:Binding_Site_Annotation . ?pfsb54 faldo:position ?thisPositionOn58 ; rdf:type faldo:ExactPosition . ?pfse55 faldo:position ?thisPositionOn59 ; rdf:type faldo:ExactPosition . ?ligand56 rdfs:subClassOf ?molecule57 . ?molecule57 rdfs:label 'substrate' . ?annotation60 faldo:begin ?pfsb61 ; faldo:end ?pfse62 ; up:ligand ?ligand63 ; rdf:type up:Binding_Site_Annotation . ?pfsb61 faldo:position ?thisPositionOn65 ; rdf:type faldo:ExactPosition . ?pfse62 faldo:position ?thisPositionOn66 ; rdf:type faldo:ExactPosition . ?ligand63 rdfs:subClassOf ?molecule64 . ?molecule64 rdfs:label 'substrate' . ?pfs67 up:annotation ?annotation68 . ?annotation68 faldo:begin ?pfsb69 ; faldo:end ?pfse70 ; rdf:type up:Active_Site_Annotation . ?pfsb69 faldo:position ?thisPositionOn71 ; rdf:type faldo:ExactPosition . ?pfse70 faldo:position ?thisPositionOn72 ; rdf:type faldo:ExactPosition . _:120844 a rdf:Statement ; up:attribution _:120810 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation0 . _:120845 a rdf:Statement ; up:attribution _:120811 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation1 . _:120846 a rdf:Statement ; up:attribution _:120812 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation3 . _:120847 a rdf:Statement ; up:attribution _:120813 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:963 . _:120848 a rdf:Statement ; up:attribution _:120814 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:28 . _:120849 a rdf:Statement ; up:attribution _:120815 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:808 . _:120850 a rdf:Statement ; up:attribution _:120816 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:12 . _:120851 a rdf:Statement ; up:attribution _:120817 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object GO:0005737 . _:120852 a rdf:Statement ; up:attribution _:120818 ; rdf:subject ?case4 ; rdf:predicate up:recommendedName ; rdf:object ?name5 . _:120853 a rdf:Statement ; up:attribution _:120819 ; rdf:subject ?case4 ; rdf:predicate up:alternativeName ; rdf:object ?name6 . _:120854 a rdf:Statement ; up:attribution _:120820 ; rdf:subject ?case7 ; rdf:predicate up:recommendedName ; rdf:object ?name8 . _:120855 a rdf:Statement ; up:attribution _:120821 ; rdf:subject ?case7 ; rdf:predicate up:alternativeName ; rdf:object ?name9 . _:120856 a rdf:Statement ; up:attribution _:120822 ; rdf:subject ?case7 ; rdf:predicate up:classifiedWith ; rdf:object keyword:486 . _:120857 a rdf:Statement ; up:attribution _:120823 ; rdf:subject ?case7 ; rdf:predicate up:classifiedWith ; rdf:object GO:0004414 . _:120858 a rdf:Statement ; up:attribution _:120824 ; rdf:subject ?case7 ; rdf:predicate up:classifiedWith ; rdf:object GO:0009086 . _:120859 a rdf:Statement ; up:attribution _:120825 ; rdf:subject ?case10 ; rdf:predicate up:recommendedName ; rdf:object ?name11 . _:120860 a rdf:Statement ; up:attribution _:120826 ; rdf:subject ?case12 ; rdf:predicate up:recommendedName ; rdf:object ?name13 . _:120861 a rdf:Statement ; up:attribution _:120827 ; rdf:subject ?case12 ; rdf:predicate up:alternativeName ; rdf:object ?name14 . _:120862 a rdf:Statement ; up:attribution _:120828 ; rdf:subject ?case15 ; rdf:predicate up:recommendedName ; rdf:object ?name16 . _:120863 a rdf:Statement ; up:attribution _:120829 ; rdf:subject ?case15 ; rdf:predicate up:classifiedWith ; rdf:object keyword:198 . _:120864 a rdf:Statement ; up:attribution _:120830 ; rdf:subject ?case15 ; rdf:predicate up:classifiedWith ; rdf:object GO:0016750 . _:120865 a rdf:Statement ; up:attribution _:120831 ; rdf:subject ?case15 ; rdf:predicate up:classifiedWith ; rdf:object GO:0006535 . _:120866 a rdf:Statement ; up:attribution _:120832 ; rdf:subject ?case17 ; rdf:predicate up:classifiedWith ; rdf:object keyword:486 . _:120867 a rdf:Statement ; up:attribution _:120833 ; rdf:subject ?case17 ; rdf:predicate up:classifiedWith ; rdf:object GO:0008899 . _:120868 a rdf:Statement ; up:attribution _:120834 ; rdf:subject ?case17 ; rdf:predicate up:classifiedWith ; rdf:object GO:0009086 . _:120869 a rdf:Statement ; up:source unirule:MF_00296 ; rdf:subject ?pfs18 ; rdf:predicate up:annotation ; rdf:object ?annotation19 . _:120870 a rdf:Statement ; up:attribution _:120835 ; rdf:subject ?pfs18 ; rdf:predicate up:annotation ; rdf:object ?annotation19 . _:120871 a rdf:Statement ; up:source unirule:MF_00296 ; rdf:subject ?pfs24 ; rdf:predicate up:annotation ; rdf:object ?annotation25 . _:120872 a rdf:Statement ; up:attribution _:120836 ; rdf:subject ?pfs24 ; rdf:predicate up:annotation ; rdf:object ?annotation25 . _:120873 a rdf:Statement ; up:source unirule:MF_00296 ; rdf:subject ?pfs30 ; rdf:predicate up:annotation ; rdf:object ?annotation31 . _:120874 a rdf:Statement ; up:attribution _:120837 ; rdf:subject ?pfs30 ; rdf:predicate up:annotation ; rdf:object ?annotation31 . _:120875 a rdf:Statement ; up:source unirule:MF_00296 ; rdf:subject ?pfs36 ; rdf:predicate up:annotation ; rdf:object ?annotation37 . _:120876 a rdf:Statement ; up:attribution _:120838 ; rdf:subject ?pfs36 ; rdf:predicate up:annotation ; rdf:object ?annotation37 . _:120877 a rdf:Statement ; up:source unirule:MF_00296 ; rdf:subject ?pfs42 ; rdf:predicate up:annotation ; rdf:object ?annotation43 . _:120878 a rdf:Statement ; up:attribution _:120839 ; rdf:subject ?pfs42 ; rdf:predicate up:annotation ; rdf:object ?annotation43 . _:120879 a rdf:Statement ; up:source unirule:MF_00296 ; rdf:subject ?pfs42 ; rdf:predicate up:annotation ; rdf:object ?annotation48 . _:120880 a rdf:Statement ; up:attribution _:120840 ; rdf:subject ?pfs42 ; rdf:predicate up:annotation ; rdf:object ?annotation48 . _:120881 a rdf:Statement ; up:source unirule:MF_00296 ; rdf:subject ?pfs42 ; rdf:predicate up:annotation ; rdf:object ?annotation53 . _:120882 a rdf:Statement ; up:attribution _:120841 ; rdf:subject ?pfs42 ; rdf:predicate up:annotation ; rdf:object ?annotation53 . _:120883 a rdf:Statement ; up:source unirule:MF_00296 ; rdf:subject ?pfs42 ; rdf:predicate up:annotation ; rdf:object ?annotation60 . _:120884 a rdf:Statement ; up:attribution _:120842 ; rdf:subject ?pfs42 ; rdf:predicate up:annotation ; rdf:object ?annotation60 . _:120885 a rdf:Statement ; up:source unirule:MF_00296 ; rdf:subject ?pfs67 ; rdf:predicate up:annotation ; rdf:object ?annotation68 . _:120886 a rdf:Statement ; up:attribution _:120843 ; rdf:subject ?pfs67 ; rdf:predicate up:annotation ; rdf:object ?annotation68 . } WHERE { #baseURI: http://purl.uniprot.org/unirule/MF_00296 #Rule MF_00296 Created by:? on:2005-02-28 Modified by:Edouard de Castro on:2024-09-02 VALUES ?supertaxon73 {taxon:2 taxon:2157} ?this up:organism ?thisOrganism ; rdfs:seeAlso signature:MF_00296 . ?thisOrganism rdfs:subClassOf+ ?supertaxon73 . BIND(URI(CONCAT(STR(?this), '#MF_00296a0')) AS ?annotation0) . BIND(URI(CONCAT(STR(?this), '#MF_00296a1')) AS ?annotation1) . BIND(URI(CONCAT(STR(?this), '#MF_00296a3')) AS ?annotation3) . OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch78 faldo:location ?templateMotifSequenceMatchRegionP4513179 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP4513181 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP45131MF_0029674 . ?templateMotifSequenceMatchRegionP4513179 faldo:begin ?templateMotifSequenceMatchBeginP4513180 . ?templateMotifSequenceMatchBeginP4513180 faldo:position ?templateMotifSequenceMatchBeginPositionP4513175 ; faldo:reference isoform:P45131-1 . ?templateMotifSequenceProfileAlignmentOperationP4513181 edam:has_input signature:MF_00296 ; rdf:type edam:operation_0300 . ?targetMotifMatch82 faldo:location ?targetMotifMatchRegionMatch83 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0029685 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP45131MF_0029676 . ?targetMotifMatchRegionMatch83 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0029684 . ?targetMotifMatchRegionMatchBeginMF_0029684 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0029677 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_0029685 edam:has_input signature:MF_00296 ; rdf:type edam:operation_0300 . BIND(?this AS ?tagP9) . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP45131MF_0029674, 1, (STRLEN(?templateMotifCigarP45131MF_0029674) - STRLEN(REPLACE(?templateMotifCigarP45131MF_0029674, CONCAT('^(?:-*[^-]){', STR(((144 - ?templateMotifSequenceMatchBeginPositionP4513175) + 1)), '}'), '')))), '[a-z]', '')) AS ?step186) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP45131MF_0029676, 1, (STRLEN(?targetMotifMatchCigarP45131MF_0029676) - STRLEN(REPLACE(?targetMotifMatchCigarP45131MF_0029676, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step186), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP45131MF_0029676, 1, (STRLEN(?targetMotifMatchCigarP45131MF_0029676) - STRLEN(REPLACE(?targetMotifMatchCigarP45131MF_0029676, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step186), '}'), '')))), '[^-]', ''))) AS ?step287) . BIND(((?step287 + ?targetMotifMatchRegionMatchBeginPositionMF_0029677) - 1) AS ?thisPositionOn22) . BIND(?thisPositionOn22 AS ?thisPositionOn23) . BIND(?this AS ?pfs1t88) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn22))) AS ?pfsb20) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn23))) AS ?pfse21) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn22, 1) = 'Y')) . BIND(URI(CONCAT(STR(?this), '#MF_00296a19')) AS ?annotation19) . BIND(?this AS ?pfs18) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch93 faldo:location ?templateMotifSequenceMatchRegionP4513194 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP4513196 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP45131MF_0029689 . ?templateMotifSequenceMatchRegionP4513194 faldo:begin ?templateMotifSequenceMatchBeginP4513195 . ?templateMotifSequenceMatchBeginP4513195 faldo:position ?templateMotifSequenceMatchBeginPositionP4513190 ; faldo:reference isoform:P45131-1 . ?templateMotifSequenceProfileAlignmentOperationP4513196 edam:has_input signature:MF_00296 ; rdf:type edam:operation_0300 . ?targetMotifMatch97 faldo:location ?targetMotifMatchRegionMatch98 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00296100 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP45131MF_0029691 . ?targetMotifMatchRegionMatch98 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0029699 . ?targetMotifMatchRegionMatchBeginMF_0029699 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0029692 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_00296100 edam:has_input signature:MF_00296 ; rdf:type edam:operation_0300 . BIND(?this AS ?tagP1P4) . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP45131MF_0029689, 1, (STRLEN(?templateMotifCigarP45131MF_0029689) - STRLEN(REPLACE(?templateMotifCigarP45131MF_0029689, CONCAT('^(?:-*[^-]){', STR(((48 - ?templateMotifSequenceMatchBeginPositionP4513190) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1101) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP45131MF_0029691, 1, (STRLEN(?targetMotifMatchCigarP45131MF_0029691) - STRLEN(REPLACE(?targetMotifMatchCigarP45131MF_0029691, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1101), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP45131MF_0029691, 1, (STRLEN(?targetMotifMatchCigarP45131MF_0029691) - STRLEN(REPLACE(?targetMotifMatchCigarP45131MF_0029691, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1101), '}'), '')))), '[^-]', ''))) AS ?step2102) . BIND(((?step2102 + ?targetMotifMatchRegionMatchBeginPositionMF_0029692) - 1) AS ?thisPositionOn28) . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP45131MF_0029689, 1, (STRLEN(?templateMotifCigarP45131MF_0029689) - STRLEN(REPLACE(?templateMotifCigarP45131MF_0029689, CONCAT('^(?:-*[^-]){', STR(((51 - ?templateMotifSequenceMatchBeginPositionP4513190) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1103) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP45131MF_0029691, 1, (STRLEN(?targetMotifMatchCigarP45131MF_0029691) - STRLEN(REPLACE(?targetMotifMatchCigarP45131MF_0029691, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1103), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP45131MF_0029691, 1, (STRLEN(?targetMotifMatchCigarP45131MF_0029691) - STRLEN(REPLACE(?targetMotifMatchCigarP45131MF_0029691, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1103), '}'), '')))), '[^-]', ''))) AS ?step2104) . BIND(((?step2104 + ?targetMotifMatchRegionMatchBeginPositionMF_0029692) - 1) AS ?thisPositionOn29) . BIND(?this AS ?pfs2t105) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn28))) AS ?pfsb26) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn29))) AS ?pfse27) . FILTER (REGEX('G[LI]S[PA]', SUBSTR(?thisSequenceValue, ?thisPositionOn28, (?thisPositionOn29 - ?thisPositionOn28)))) . BIND(URI(CONCAT(STR(?this), '#MF_00296a25')) AS ?annotation25) . BIND(?this AS ?pfs24) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch110 faldo:location ?templateMotifSequenceMatchRegionP45131111 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP45131113 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP45131MF_00296106 . ?templateMotifSequenceMatchRegionP45131111 faldo:begin ?templateMotifSequenceMatchBeginP45131112 . ?templateMotifSequenceMatchBeginP45131112 faldo:position ?templateMotifSequenceMatchBeginPositionP45131107 ; faldo:reference isoform:P45131-1 . ?templateMotifSequenceProfileAlignmentOperationP45131113 edam:has_input signature:MF_00296 ; rdf:type edam:operation_0300 . ?targetMotifMatch114 faldo:location ?targetMotifMatchRegionMatch115 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00296117 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP45131MF_00296108 . ?targetMotifMatchRegionMatch115 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00296116 . ?targetMotifMatchRegionMatchBeginMF_00296116 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00296109 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_00296117 edam:has_input signature:MF_00296 ; rdf:type edam:operation_0300 . BIND(?this AS ?tagP17) . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP45131MF_00296106, 1, (STRLEN(?templateMotifCigarP45131MF_00296106) - STRLEN(REPLACE(?templateMotifCigarP45131MF_00296106, CONCAT('^(?:-*[^-]){', STR(((306 - ?templateMotifSequenceMatchBeginPositionP45131107) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1118) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP45131MF_00296108, 1, (STRLEN(?targetMotifMatchCigarP45131MF_00296108) - STRLEN(REPLACE(?targetMotifMatchCigarP45131MF_00296108, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1118), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP45131MF_00296108, 1, (STRLEN(?targetMotifMatchCigarP45131MF_00296108) - STRLEN(REPLACE(?targetMotifMatchCigarP45131MF_00296108, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1118), '}'), '')))), '[^-]', ''))) AS ?step2119) . BIND(((?step2119 + ?targetMotifMatchRegionMatchBeginPositionMF_00296109) - 1) AS ?thisPositionOn34) . BIND(?thisPositionOn34 AS ?thisPositionOn35) . BIND(?this AS ?pfs3t120) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn34))) AS ?pfsb32) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn35))) AS ?pfse33) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn34, 1) = 'R')) . BIND(URI(CONCAT(STR(?this), '#MF_00296a31')) AS ?annotation31) . BIND(?this AS ?pfs30) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch125 faldo:location ?templateMotifSequenceMatchRegionP45131126 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP45131128 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP45131MF_00296121 . ?templateMotifSequenceMatchRegionP45131126 faldo:begin ?templateMotifSequenceMatchBeginP45131127 . ?templateMotifSequenceMatchBeginP45131127 faldo:position ?templateMotifSequenceMatchBeginPositionP45131122 ; faldo:reference isoform:P45131-1 . ?templateMotifSequenceProfileAlignmentOperationP45131128 edam:has_input signature:MF_00296 ; rdf:type edam:operation_0300 . ?targetMotifMatch129 faldo:location ?targetMotifMatchRegionMatch130 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00296132 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP45131MF_00296123 . ?targetMotifMatchRegionMatch130 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00296131 . ?targetMotifMatchRegionMatchBeginMF_00296131 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00296124 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_00296132 edam:has_input signature:MF_00296 ; rdf:type edam:operation_0300 . BIND(?this AS ?tagP11) . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP45131MF_00296121, 1, (STRLEN(?templateMotifCigarP45131MF_00296121) - STRLEN(REPLACE(?templateMotifCigarP45131MF_00296121, CONCAT('^(?:-*[^-]){', STR(((180 - ?templateMotifSequenceMatchBeginPositionP45131122) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1133) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP45131MF_00296123, 1, (STRLEN(?targetMotifMatchCigarP45131MF_00296123) - STRLEN(REPLACE(?targetMotifMatchCigarP45131MF_00296123, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1133), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP45131MF_00296123, 1, (STRLEN(?targetMotifMatchCigarP45131MF_00296123) - STRLEN(REPLACE(?targetMotifMatchCigarP45131MF_00296123, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1133), '}'), '')))), '[^-]', ''))) AS ?step2134) . BIND(((?step2134 + ?targetMotifMatchRegionMatchBeginPositionMF_00296124) - 1) AS ?thisPositionOn40) . BIND(?thisPositionOn40 AS ?thisPositionOn41) . BIND(?this AS ?pfs4t135) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn40))) AS ?pfsb38) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn41))) AS ?pfse39) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn40, 1) = 'R')) . BIND(URI(CONCAT(STR(?this), '#MF_00296a37')) AS ?annotation37) . BIND(?this AS ?pfs36) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch140 faldo:location ?templateMotifSequenceMatchRegionP45131141 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP45131143 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP45131MF_00296136 . ?templateMotifSequenceMatchRegionP45131141 faldo:begin ?templateMotifSequenceMatchBeginP45131142 . ?templateMotifSequenceMatchBeginP45131142 faldo:position ?templateMotifSequenceMatchBeginPositionP45131137 ; faldo:reference isoform:P45131-1 . ?templateMotifSequenceProfileAlignmentOperationP45131143 edam:has_input signature:MF_00296 ; rdf:type edam:operation_0300 . ?targetMotifMatch144 faldo:location ?targetMotifMatchRegionMatch145 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00296147 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP45131MF_00296138 . ?targetMotifMatchRegionMatch145 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00296146 . ?targetMotifMatchRegionMatchBeginMF_00296146 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00296139 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_00296147 edam:has_input signature:MF_00296 ; rdf:type edam:operation_0300 . BIND(?this AS ?tagFTGRP_1) . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP45131MF_00296136, 1, (STRLEN(?templateMotifCigarP45131MF_00296136) - STRLEN(REPLACE(?templateMotifCigarP45131MF_00296136, CONCAT('^(?:-*[^-]){', STR(((143 - ?templateMotifSequenceMatchBeginPositionP45131137) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1148) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP45131MF_00296138, 1, (STRLEN(?targetMotifMatchCigarP45131MF_00296138) - STRLEN(REPLACE(?targetMotifMatchCigarP45131MF_00296138, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1148), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP45131MF_00296138, 1, (STRLEN(?targetMotifMatchCigarP45131MF_00296138) - STRLEN(REPLACE(?targetMotifMatchCigarP45131MF_00296138, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1148), '}'), '')))), '[^-]', ''))) AS ?step2149) . BIND(((?step2149 + ?targetMotifMatchRegionMatchBeginPositionMF_00296139) - 1) AS ?thisPositionOn46) . BIND(?thisPositionOn46 AS ?thisPositionOn47) . BIND(?this AS ?pfs5t150) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn46))) AS ?pfsb44) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn47))) AS ?pfse45) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn46, 1) = 'S')) . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP45131MF_00296136, 1, (STRLEN(?templateMotifCigarP45131MF_00296136) - STRLEN(REPLACE(?templateMotifCigarP45131MF_00296136, CONCAT('^(?:-*[^-]){', STR(((337 - ?templateMotifSequenceMatchBeginPositionP45131137) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1151) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP45131MF_00296138, 1, (STRLEN(?targetMotifMatchCigarP45131MF_00296138) - STRLEN(REPLACE(?targetMotifMatchCigarP45131MF_00296138, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1151), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP45131MF_00296138, 1, (STRLEN(?targetMotifMatchCigarP45131MF_00296138) - STRLEN(REPLACE(?targetMotifMatchCigarP45131MF_00296138, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1151), '}'), '')))), '[^-]', ''))) AS ?step2152) . BIND(((?step2152 + ?targetMotifMatchRegionMatchBeginPositionMF_00296139) - 1) AS ?thisPositionOn51) . BIND(?thisPositionOn51 AS ?thisPositionOn52) . BIND(?this AS ?pfs5t153) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn51))) AS ?pfsb49) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn52))) AS ?pfse50) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn51, 1) = 'H')) . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP45131MF_00296136, 1, (STRLEN(?templateMotifCigarP45131MF_00296136) - STRLEN(REPLACE(?templateMotifCigarP45131MF_00296136, CONCAT('^(?:-*[^-]){', STR(((212 - ?templateMotifSequenceMatchBeginPositionP45131137) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1154) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP45131MF_00296138, 1, (STRLEN(?targetMotifMatchCigarP45131MF_00296138) - STRLEN(REPLACE(?targetMotifMatchCigarP45131MF_00296138, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1154), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP45131MF_00296138, 1, (STRLEN(?targetMotifMatchCigarP45131MF_00296138) - STRLEN(REPLACE(?targetMotifMatchCigarP45131MF_00296138, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1154), '}'), '')))), '[^-]', ''))) AS ?step2155) . BIND(((?step2155 + ?targetMotifMatchRegionMatchBeginPositionMF_00296139) - 1) AS ?thisPositionOn58) . BIND(?thisPositionOn58 AS ?thisPositionOn59) . BIND(?this AS ?pfs5t156) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn58))) AS ?pfsb54) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn59))) AS ?pfse55) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn58, 1) = 'R')) . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP45131MF_00296136, 1, (STRLEN(?templateMotifCigarP45131MF_00296136) - STRLEN(REPLACE(?templateMotifCigarP45131MF_00296136, CONCAT('^(?:-*[^-]){', STR(((338 - ?templateMotifSequenceMatchBeginPositionP45131137) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1157) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP45131MF_00296138, 1, (STRLEN(?targetMotifMatchCigarP45131MF_00296138) - STRLEN(REPLACE(?targetMotifMatchCigarP45131MF_00296138, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1157), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP45131MF_00296138, 1, (STRLEN(?targetMotifMatchCigarP45131MF_00296138) - STRLEN(REPLACE(?targetMotifMatchCigarP45131MF_00296138, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1157), '}'), '')))), '[^-]', ''))) AS ?step2158) . BIND(((?step2158 + ?targetMotifMatchRegionMatchBeginPositionMF_00296139) - 1) AS ?thisPositionOn65) . BIND(?thisPositionOn65 AS ?thisPositionOn66) . BIND(?this AS ?pfs5t159) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn65))) AS ?pfsb61) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn66))) AS ?pfse62) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn65, 1) = 'D')) . BIND(?this AS ?pfs42) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch164 faldo:location ?templateMotifSequenceMatchRegionP45131165 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP45131167 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP45131MF_00296160 . ?templateMotifSequenceMatchRegionP45131165 faldo:begin ?templateMotifSequenceMatchBeginP45131166 . ?templateMotifSequenceMatchBeginP45131166 faldo:position ?templateMotifSequenceMatchBeginPositionP45131161 ; faldo:reference isoform:P45131-1 . ?templateMotifSequenceProfileAlignmentOperationP45131167 edam:has_input signature:MF_00296 ; rdf:type edam:operation_0300 . ?targetMotifMatch168 faldo:location ?targetMotifMatchRegionMatch169 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00296171 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP45131MF_00296162 . ?targetMotifMatchRegionMatch169 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00296170 . ?targetMotifMatchRegionMatchBeginMF_00296170 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00296163 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_00296171 edam:has_input signature:MF_00296 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP45131MF_00296160, 1, (STRLEN(?templateMotifCigarP45131MF_00296160) - STRLEN(REPLACE(?templateMotifCigarP45131MF_00296160, CONCAT('^(?:-*[^-]){', STR(((304 - ?templateMotifSequenceMatchBeginPositionP45131161) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1172) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP45131MF_00296162, 1, (STRLEN(?targetMotifMatchCigarP45131MF_00296162) - STRLEN(REPLACE(?targetMotifMatchCigarP45131MF_00296162, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1172), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP45131MF_00296162, 1, (STRLEN(?targetMotifMatchCigarP45131MF_00296162) - STRLEN(REPLACE(?targetMotifMatchCigarP45131MF_00296162, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1172), '}'), '')))), '[^-]', ''))) AS ?step2173) . BIND(((?step2173 + ?targetMotifMatchRegionMatchBeginPositionMF_00296163) - 1) AS ?thisPositionOn71) . BIND(?thisPositionOn71 AS ?thisPositionOn72) . BIND(?this AS ?pfs6t174) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn71))) AS ?pfsb69) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn72))) AS ?pfse70) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn71, 1) = 'D')) . BIND(URI(CONCAT(STR(?this), '#MF_00296a68')) AS ?annotation68) . BIND(?this AS ?pfs67) . } OPTIONAL { ?this a up:Protein . BIND(?this AS ?caseWithTag175) . BIND(URI(CONCAT(STR(?this), '#MF_00296a5')) AS ?name5) . BIND(URI(CONCAT(STR(?this), '#MF_00296a6')) AS ?name6) . } BIND(IF((BOUND(?tagFTGRP_1) || BOUND(?tagP17)), ?caseWithTag175, ?UNBOUND_VARIABLE) AS ?case4) . OPTIONAL { ?this a up:Protein . BIND(?this AS ?caseWithTag176) . BIND(URI(CONCAT(STR(?this), '#MF_00296a8')) AS ?name8) . BIND(URI(CONCAT(STR(?this), '#MF_00296a9')) AS ?name9) . } BIND(IF((BOUND(?tagFTGRP_1) || BOUND(?tagP11) || BOUND(?tagP17)), ?caseWithTag176, ?UNBOUND_VARIABLE) AS ?case7) . OPTIONAL { ?this a up:Protein . BIND(?this AS ?caseWithTag177) . BIND(URI(CONCAT(STR(?this), '#MF_00296a11')) AS ?name11) . } BIND(IF((BOUND(?tagFTGRP_1) || BOUND(?tagP1P4) || BOUND(?tagP17) || BOUND(?tagP11)), ?caseWithTag177, ?UNBOUND_VARIABLE) AS ?case10) . OPTIONAL { ?this a up:Protein . BIND(?this AS ?caseWithTag178) . BIND(URI(CONCAT(STR(?this), '#MF_00296a13')) AS ?name13) . BIND(URI(CONCAT(STR(?this), '#MF_00296a14')) AS ?name14) . } BIND(IF((BOUND(?tagP1P4) || BOUND(?tagP17) || BOUND(?tagP11) || BOUND(?tagFTGRP_1) || BOUND(?tagP9)), ?caseWithTag178, ?UNBOUND_VARIABLE) AS ?case12) . OPTIONAL { ?this a up:Protein . BIND(?this AS ?caseWithTag179) . BIND(URI(CONCAT(STR(?this), '#MF_00296a16')) AS ?name16) . } BIND(IF((BOUND(?tagP1P4) || BOUND(?tagP17) || BOUND(?tagP9) || BOUND(?tagP11) || BOUND(?tagFTGRP_1)), ?caseWithTag179, ?UNBOUND_VARIABLE) AS ?case15) . OPTIONAL { ?this a up:Protein . BIND(?this AS ?caseWithTag180) . } BIND(IF((BOUND(?tagFTGRP_1) || BOUND(?tagP17) || BOUND(?tagP11) || BOUND(?tagP1P4) || BOUND(?tagP9)), ?caseWithTag180, ?UNBOUND_VARIABLE) AS ?case17) . }