CONSTRUCT { _:160296 up:source unirule:MF_00407 . _:160297 up:source unirule:MF_00407 . _:160298 up:source unirule:MF_00407 . _:160299 up:source unirule:MF_00407 . _:160300 up:source unirule:MF_00407 . _:160301 up:source unirule:MF_00407 . _:160302 up:source unirule:MF_00407 . _:160303 up:source unirule:MF_00407 . _:160304 up:source unirule:MF_00407 . _:160305 up:source unirule:MF_00407 . _:160306 up:source unirule:MF_00407 . _:160307 up:source unirule:MF_00407 . _:160308 up:source unirule:MF_00407 . _:160309 up:source unirule:MF_00407 . _:160310 up:source unirule:MF_00407 . _:160311 up:source unirule:MF_00407 . _:160312 up:source unirule:MF_00407 . _:160313 up:source unirule:MF_00407 . _:160314 up:source unirule:MF_00407 . _:160315 up:source unirule:MF_00407 . _:160316 up:source unirule:MF_00407 . _:160317 up:source unirule:MF_00407 . _:160318 up:source unirule:MF_00407 . _:160319 up:source unirule:MF_00407 . _:160320 up:source unirule:MF_00407 . _:160321 up:source unirule:MF_00407 . _:160322 up:source unirule:MF_00407 . _:160323 up:source unirule:MF_00407 . _:160324 up:source unirule:MF_00407 . _:160325 up:source unirule:MF_00407 . _:160326 up:source unirule:MF_00407 . _:160327 up:source unirule:MF_00407 . _:160328 up:source unirule:MF_00407 . _:160329 up:source unirule:MF_00407 . _:160330 up:source unirule:MF_00407 . ?this up:annotation ?annotation1 , ?annotation2 , ?annotation3 ; up:classifiedWith GO:0003910 , GO:0005524 , GO:0006260 , GO:0006281 , GO:0006310 , keyword:131 , keyword:132 , keyword:227 , keyword:233 , keyword:234 , keyword:235 , keyword:436 , keyword:460 , keyword:479 , keyword:547 , keyword:67 . ?gene0 skos:prefLabel 'lig' . ?annotation1 a up:Function_Annotation ; rdfs:comment 'DNA ligase that seals nicks in double-stranded DNA during DNA replication, DNA recombination and DNA repair.' . ?annotation2 up:cofactor chebi:18420 ; rdf:type up:Cofactor_Annotation . ?annotation3 a up:Similarity_Annotation ; rdfs:comment 'Belongs to the ATP-dependent DNA ligase family.' . ?case4 up:alternativeName ?name6 ; up:recommendedName ?name5 . ?name5 up:ecName '6.5.1.1' ; up:fullName 'Probable DNA ligase' ; rdf:type up:Structured_Name . ?name6 up:fullName 'Polydeoxyribonucleotide synthase [ATP]' ; rdf:type up:Structured_Name . ?case7 up:alternativeName ?name9 ; up:classifiedWith keyword:520 ; up:recommendedName ?name8 . ?name8 up:ecName '6.5.1.6' ; up:fullName 'DNA ligase' ; rdf:type up:Structured_Name . ?name9 up:fullName 'Polydeoxyribonucleotide synthase [ATP/NAD(+)]' ; rdf:type up:Structured_Name . ?case10 up:alternativeName ?name12 ; up:recommendedName ?name11 . ?name11 up:ecName '6.5.1.1' ; up:fullName 'DNA ligase' ; rdf:type up:Structured_Name . ?name12 up:fullName 'Polydeoxyribonucleotide synthase [ATP]' ; rdf:type up:Structured_Name . ?pfs13 up:annotation ?annotation14 . ?annotation14 faldo:begin ?pfsb15 ; faldo:end ?pfse16 ; rdf:type up:Active_Site_Annotation ; rdfs:comment 'N6-AMP-lysine intermediate' . ?pfsb15 faldo:position ?thisPositionOn17 ; rdf:type faldo:ExactPosition . ?pfse16 faldo:position ?thisPositionOn18 ; rdf:type faldo:ExactPosition . ?pfs19 up:annotation ?annotation20 . ?annotation20 faldo:begin ?pfsb21 ; faldo:end ?pfse22 ; up:ligand ?ligand23 ; rdf:type up:Binding_Site_Annotation . ?pfsb21 faldo:position ?thisPositionOn24 ; rdf:type faldo:ExactPosition . ?pfse22 faldo:position ?thisPositionOn25 ; rdf:type faldo:ExactPosition . ?ligand23 rdfs:subClassOf chebi:30616 . ?pfs26 up:annotation ?annotation27 . ?annotation27 faldo:begin ?pfsb28 ; faldo:end ?pfse29 ; up:ligand ?ligand30 ; rdf:type up:Binding_Site_Annotation . ?pfsb28 faldo:position ?thisPositionOn31 ; rdf:type faldo:ExactPosition . ?pfse29 faldo:position ?thisPositionOn32 ; rdf:type faldo:ExactPosition . ?ligand30 rdfs:subClassOf chebi:30616 . ?pfs33 up:annotation ?annotation34 . ?annotation34 faldo:begin ?pfsb35 ; faldo:end ?pfse36 ; up:ligand ?ligand37 ; rdf:type up:Binding_Site_Annotation . ?pfsb35 faldo:position ?thisPositionOn38 ; rdf:type faldo:ExactPosition . ?pfse36 faldo:position ?thisPositionOn39 ; rdf:type faldo:ExactPosition . ?ligand37 rdfs:subClassOf chebi:30616 . ?pfs40 up:annotation ?annotation41 . ?annotation41 faldo:begin ?pfsb42 ; faldo:end ?pfse43 ; up:ligand ?ligand44 ; rdf:type up:Binding_Site_Annotation . ?pfsb42 faldo:position ?thisPositionOn45 ; rdf:type faldo:ExactPosition . ?pfse43 faldo:position ?thisPositionOn46 ; rdf:type faldo:ExactPosition . ?ligand44 rdfs:subClassOf chebi:30616 . ?pfs47 up:annotation ?annotation48 . ?annotation48 faldo:begin ?pfsb49 ; faldo:end ?pfse50 ; up:ligand ?ligand51 ; rdf:type up:Binding_Site_Annotation . ?pfsb49 faldo:position ?thisPositionOn52 ; rdf:type faldo:ExactPosition . ?pfse50 faldo:position ?thisPositionOn53 ; rdf:type faldo:ExactPosition . ?ligand51 rdfs:subClassOf chebi:30616 . ?pfs54 up:annotation ?annotation55 . ?annotation55 faldo:begin ?pfsb56 ; faldo:end ?pfse57 ; up:ligand ?ligand58 ; rdf:type up:Binding_Site_Annotation . ?pfsb56 faldo:position ?thisPositionOn59 ; rdf:type faldo:ExactPosition . ?pfse57 faldo:position ?thisPositionOn60 ; rdf:type faldo:ExactPosition . ?ligand58 rdfs:subClassOf chebi:30616 . ?pfs61 up:annotation ?annotation62 . ?annotation62 faldo:begin ?pfsb63 ; faldo:end ?pfse64 ; up:ligand ?ligand65 ; rdf:type up:Binding_Site_Annotation . ?pfsb63 faldo:position ?thisPositionOn66 ; rdf:type faldo:ExactPosition . ?pfse64 faldo:position ?thisPositionOn67 ; rdf:type faldo:ExactPosition . ?ligand65 rdfs:subClassOf chebi:30616 . _:160331 a rdf:Statement ; up:attribution _:160296 ; rdf:subject ?gene0 ; rdf:predicate up:encodedBy ; rdf:object ?gene0 . _:160332 a rdf:Statement ; up:attribution _:160297 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation1 . _:160333 a rdf:Statement ; up:attribution _:160298 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation2 . _:160334 a rdf:Statement ; up:attribution _:160299 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation3 . _:160335 a rdf:Statement ; up:attribution _:160300 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:227 . _:160336 a rdf:Statement ; up:attribution _:160301 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:234 . _:160337 a rdf:Statement ; up:attribution _:160302 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:235 . _:160338 a rdf:Statement ; up:attribution _:160303 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:233 . _:160339 a rdf:Statement ; up:attribution _:160304 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:131 . _:160340 a rdf:Statement ; up:attribution _:160305 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:132 . _:160341 a rdf:Statement ; up:attribution _:160306 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:436 . _:160342 a rdf:Statement ; up:attribution _:160307 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:67 . _:160343 a rdf:Statement ; up:attribution _:160308 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:460 . _:160344 a rdf:Statement ; up:attribution _:160309 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:479 . _:160345 a rdf:Statement ; up:attribution _:160310 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:547 . _:160346 a rdf:Statement ; up:attribution _:160311 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object GO:0005524 . _:160347 a rdf:Statement ; up:attribution _:160312 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object GO:0003910 . _:160348 a rdf:Statement ; up:attribution _:160313 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object GO:0006310 . _:160349 a rdf:Statement ; up:attribution _:160314 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object GO:0006281 . _:160350 a rdf:Statement ; up:attribution _:160315 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object GO:0006260 . _:160351 a rdf:Statement ; up:attribution _:160316 ; rdf:subject ?case4 ; rdf:predicate up:recommendedName ; rdf:object ?name5 . _:160352 a rdf:Statement ; up:attribution _:160317 ; rdf:subject ?case4 ; rdf:predicate up:alternativeName ; rdf:object ?name6 . _:160353 a rdf:Statement ; up:attribution _:160318 ; rdf:subject ?case7 ; rdf:predicate up:recommendedName ; rdf:object ?name8 . _:160354 a rdf:Statement ; up:attribution _:160319 ; rdf:subject ?case7 ; rdf:predicate up:alternativeName ; rdf:object ?name9 . _:160355 a rdf:Statement ; up:attribution _:160320 ; rdf:subject ?case7 ; rdf:predicate up:classifiedWith ; rdf:object keyword:520 . _:160356 a rdf:Statement ; up:attribution _:160321 ; rdf:subject ?case10 ; rdf:predicate up:recommendedName ; rdf:object ?name11 . _:160357 a rdf:Statement ; up:attribution _:160322 ; rdf:subject ?case10 ; rdf:predicate up:alternativeName ; rdf:object ?name12 . _:160358 a rdf:Statement ; up:source unirule:MF_00407 ; rdf:subject ?pfs13 ; rdf:predicate up:annotation ; rdf:object ?annotation14 . _:160359 a rdf:Statement ; up:attribution _:160323 ; rdf:subject ?pfs13 ; rdf:predicate up:annotation ; rdf:object ?annotation14 . _:160360 a rdf:Statement ; up:source unirule:MF_00407 ; rdf:subject ?pfs19 ; rdf:predicate up:annotation ; rdf:object ?annotation20 . _:160361 a rdf:Statement ; up:attribution _:160324 ; rdf:subject ?pfs19 ; rdf:predicate up:annotation ; rdf:object ?annotation20 . _:160362 a rdf:Statement ; up:source unirule:MF_00407 ; rdf:subject ?pfs26 ; rdf:predicate up:annotation ; rdf:object ?annotation27 . _:160363 a rdf:Statement ; up:attribution _:160325 ; rdf:subject ?pfs26 ; rdf:predicate up:annotation ; rdf:object ?annotation27 . _:160364 a rdf:Statement ; up:source unirule:MF_00407 ; rdf:subject ?pfs33 ; rdf:predicate up:annotation ; rdf:object ?annotation34 . _:160365 a rdf:Statement ; up:attribution _:160326 ; rdf:subject ?pfs33 ; rdf:predicate up:annotation ; rdf:object ?annotation34 . _:160366 a rdf:Statement ; up:source unirule:MF_00407 ; rdf:subject ?pfs40 ; rdf:predicate up:annotation ; rdf:object ?annotation41 . _:160367 a rdf:Statement ; up:attribution _:160327 ; rdf:subject ?pfs40 ; rdf:predicate up:annotation ; rdf:object ?annotation41 . _:160368 a rdf:Statement ; up:source unirule:MF_00407 ; rdf:subject ?pfs47 ; rdf:predicate up:annotation ; rdf:object ?annotation48 . _:160369 a rdf:Statement ; up:attribution _:160328 ; rdf:subject ?pfs47 ; rdf:predicate up:annotation ; rdf:object ?annotation48 . _:160370 a rdf:Statement ; up:source unirule:MF_00407 ; rdf:subject ?pfs54 ; rdf:predicate up:annotation ; rdf:object ?annotation55 . _:160371 a rdf:Statement ; up:attribution _:160329 ; rdf:subject ?pfs54 ; rdf:predicate up:annotation ; rdf:object ?annotation55 . _:160372 a rdf:Statement ; up:source unirule:MF_00407 ; rdf:subject ?pfs61 ; rdf:predicate up:annotation ; rdf:object ?annotation62 . _:160373 a rdf:Statement ; up:attribution _:160330 ; rdf:subject ?pfs61 ; rdf:predicate up:annotation ; rdf:object ?annotation62 . } WHERE { #baseURI: http://purl.uniprot.org/unirule/MF_00407 #Rule MF_00407 Created by:? on:2005-02-28 Modified by:Edouard de Castro on:2023-06-01 VALUES ?supertaxon68 {taxon:2 taxon:2157} ?this up:organism ?thisOrganism ; rdfs:seeAlso signature:MF_00407 . ?thisOrganism rdfs:subClassOf+ ?supertaxon68 . BIND(URI(CONCAT(STR(?this), '#MF_00407a1')) AS ?annotation1) . BIND(URI(CONCAT(STR(?this), '#MF_00407a2')) AS ?annotation2) . BIND(URI(CONCAT(STR(?this), '#MF_00407a3')) AS ?annotation3) . OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch73 faldo:location ?templateMotifSequenceMatchRegionP5670974 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP5670976 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP56709MF_0040769 . ?templateMotifSequenceMatchRegionP5670974 faldo:begin ?templateMotifSequenceMatchBeginP5670975 . ?templateMotifSequenceMatchBeginP5670975 faldo:position ?templateMotifSequenceMatchBeginPositionP5670970 ; faldo:reference isoform:P56709-1 . ?templateMotifSequenceProfileAlignmentOperationP5670976 edam:has_input signature:MF_00407 ; rdf:type edam:operation_0300 . ?targetMotifMatch77 faldo:location ?targetMotifMatchRegionMatch78 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0040780 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP56709MF_0040771 . ?targetMotifMatchRegionMatch78 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0040779 . ?targetMotifMatchRegionMatchBeginMF_0040779 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0040772 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_0040780 edam:has_input signature:MF_00407 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP56709MF_0040769, 1, (STRLEN(?templateMotifCigarP56709MF_0040769) - STRLEN(REPLACE(?templateMotifCigarP56709MF_0040769, CONCAT('^(?:-*[^-]){', STR(((249 - ?templateMotifSequenceMatchBeginPositionP5670970) + 1)), '}'), '')))), '[a-z]', '')) AS ?step181) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP56709MF_0040771, 1, (STRLEN(?targetMotifMatchCigarP56709MF_0040771) - STRLEN(REPLACE(?targetMotifMatchCigarP56709MF_0040771, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step181), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP56709MF_0040771, 1, (STRLEN(?targetMotifMatchCigarP56709MF_0040771) - STRLEN(REPLACE(?targetMotifMatchCigarP56709MF_0040771, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step181), '}'), '')))), '[^-]', ''))) AS ?step282) . BIND(((?step282 + ?targetMotifMatchRegionMatchBeginPositionMF_0040772) - 1) AS ?thisPositionOn17) . BIND(?thisPositionOn17 AS ?thisPositionOn18) . BIND(?this AS ?pfs1t83) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn17))) AS ?pfsb15) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn18))) AS ?pfse16) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn17, 1) = 'K')) . BIND(URI(CONCAT(STR(?this), '#MF_00407a14')) AS ?annotation14) . BIND(?this AS ?pfs13) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch88 faldo:location ?templateMotifSequenceMatchRegionP5670989 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP5670991 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP56709MF_0040784 . ?templateMotifSequenceMatchRegionP5670989 faldo:begin ?templateMotifSequenceMatchBeginP5670990 . ?templateMotifSequenceMatchBeginP5670990 faldo:position ?templateMotifSequenceMatchBeginPositionP5670985 ; faldo:reference isoform:P56709-1 . ?templateMotifSequenceProfileAlignmentOperationP5670991 edam:has_input signature:MF_00407 ; rdf:type edam:operation_0300 . ?targetMotifMatch92 faldo:location ?targetMotifMatchRegionMatch93 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0040795 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP56709MF_0040786 . ?targetMotifMatchRegionMatch93 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0040794 . ?targetMotifMatchRegionMatchBeginMF_0040794 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0040787 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_0040795 edam:has_input signature:MF_00407 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP56709MF_0040784, 1, (STRLEN(?templateMotifCigarP56709MF_0040784) - STRLEN(REPLACE(?templateMotifCigarP56709MF_0040784, CONCAT('^(?:-*[^-]){', STR(((247 - ?templateMotifSequenceMatchBeginPositionP5670985) + 1)), '}'), '')))), '[a-z]', '')) AS ?step196) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP56709MF_0040786, 1, (STRLEN(?targetMotifMatchCigarP56709MF_0040786) - STRLEN(REPLACE(?targetMotifMatchCigarP56709MF_0040786, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step196), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP56709MF_0040786, 1, (STRLEN(?targetMotifMatchCigarP56709MF_0040786) - STRLEN(REPLACE(?targetMotifMatchCigarP56709MF_0040786, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step196), '}'), '')))), '[^-]', ''))) AS ?step297) . BIND(((?step297 + ?targetMotifMatchRegionMatchBeginPositionMF_0040787) - 1) AS ?thisPositionOn24) . BIND(?thisPositionOn24 AS ?thisPositionOn25) . BIND(?this AS ?pfs1t98) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn24))) AS ?pfsb21) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn25))) AS ?pfse22) . FILTER (REGEX('[DE]', SUBSTR(?thisSequenceValue, ?thisPositionOn24, 1))) . BIND(URI(CONCAT(STR(?this), '#MF_00407a20')) AS ?annotation20) . BIND(?this AS ?pfs19) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch103 faldo:location ?templateMotifSequenceMatchRegionP56709104 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP56709106 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP56709MF_0040799 . ?templateMotifSequenceMatchRegionP56709104 faldo:begin ?templateMotifSequenceMatchBeginP56709105 . ?templateMotifSequenceMatchBeginP56709105 faldo:position ?templateMotifSequenceMatchBeginPositionP56709100 ; faldo:reference isoform:P56709-1 . ?templateMotifSequenceProfileAlignmentOperationP56709106 edam:has_input signature:MF_00407 ; rdf:type edam:operation_0300 . ?targetMotifMatch107 faldo:location ?targetMotifMatchRegionMatch108 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00407110 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP56709MF_00407101 . ?targetMotifMatchRegionMatch108 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00407109 . ?targetMotifMatchRegionMatchBeginMF_00407109 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00407102 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_00407110 edam:has_input signature:MF_00407 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP56709MF_0040799, 1, (STRLEN(?templateMotifCigarP56709MF_0040799) - STRLEN(REPLACE(?templateMotifCigarP56709MF_0040799, CONCAT('^(?:-*[^-]){', STR(((254 - ?templateMotifSequenceMatchBeginPositionP56709100) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1111) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP56709MF_00407101, 1, (STRLEN(?targetMotifMatchCigarP56709MF_00407101) - STRLEN(REPLACE(?targetMotifMatchCigarP56709MF_00407101, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1111), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP56709MF_00407101, 1, (STRLEN(?targetMotifMatchCigarP56709MF_00407101) - STRLEN(REPLACE(?targetMotifMatchCigarP56709MF_00407101, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1111), '}'), '')))), '[^-]', ''))) AS ?step2112) . BIND(((?step2112 + ?targetMotifMatchRegionMatchBeginPositionMF_00407102) - 1) AS ?thisPositionOn31) . BIND(?thisPositionOn31 AS ?thisPositionOn32) . BIND(?this AS ?pfs1t113) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn31))) AS ?pfsb28) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn32))) AS ?pfse29) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn31, 1) = 'R')) . BIND(URI(CONCAT(STR(?this), '#MF_00407a27')) AS ?annotation27) . BIND(?this AS ?pfs26) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch118 faldo:location ?templateMotifSequenceMatchRegionP56709119 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP56709121 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP56709MF_00407114 . ?templateMotifSequenceMatchRegionP56709119 faldo:begin ?templateMotifSequenceMatchBeginP56709120 . ?templateMotifSequenceMatchBeginP56709120 faldo:position ?templateMotifSequenceMatchBeginPositionP56709115 ; faldo:reference isoform:P56709-1 . ?templateMotifSequenceProfileAlignmentOperationP56709121 edam:has_input signature:MF_00407 ; rdf:type edam:operation_0300 . ?targetMotifMatch122 faldo:location ?targetMotifMatchRegionMatch123 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00407125 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP56709MF_00407116 . ?targetMotifMatchRegionMatch123 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00407124 . ?targetMotifMatchRegionMatchBeginMF_00407124 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00407117 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_00407125 edam:has_input signature:MF_00407 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP56709MF_00407114, 1, (STRLEN(?templateMotifCigarP56709MF_00407114) - STRLEN(REPLACE(?templateMotifCigarP56709MF_00407114, CONCAT('^(?:-*[^-]){', STR(((269 - ?templateMotifSequenceMatchBeginPositionP56709115) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1126) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP56709MF_00407116, 1, (STRLEN(?targetMotifMatchCigarP56709MF_00407116) - STRLEN(REPLACE(?targetMotifMatchCigarP56709MF_00407116, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1126), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP56709MF_00407116, 1, (STRLEN(?targetMotifMatchCigarP56709MF_00407116) - STRLEN(REPLACE(?targetMotifMatchCigarP56709MF_00407116, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1126), '}'), '')))), '[^-]', ''))) AS ?step2127) . BIND(((?step2127 + ?targetMotifMatchRegionMatchBeginPositionMF_00407117) - 1) AS ?thisPositionOn38) . BIND(?thisPositionOn38 AS ?thisPositionOn39) . BIND(?this AS ?pfs1t128) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn38))) AS ?pfsb35) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn39))) AS ?pfse36) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn38, 1) = 'R')) . BIND(URI(CONCAT(STR(?this), '#MF_00407a34')) AS ?annotation34) . BIND(?this AS ?pfs33) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch133 faldo:location ?templateMotifSequenceMatchRegionP56709134 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP56709136 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP56709MF_00407129 . ?templateMotifSequenceMatchRegionP56709134 faldo:begin ?templateMotifSequenceMatchBeginP56709135 . ?templateMotifSequenceMatchBeginP56709135 faldo:position ?templateMotifSequenceMatchBeginPositionP56709130 ; faldo:reference isoform:P56709-1 . ?templateMotifSequenceProfileAlignmentOperationP56709136 edam:has_input signature:MF_00407 ; rdf:type edam:operation_0300 . ?targetMotifMatch137 faldo:location ?targetMotifMatchRegionMatch138 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00407140 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP56709MF_00407131 . ?targetMotifMatchRegionMatch138 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00407139 . ?targetMotifMatchRegionMatchBeginMF_00407139 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00407132 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_00407140 edam:has_input signature:MF_00407 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP56709MF_00407129, 1, (STRLEN(?templateMotifCigarP56709MF_00407129) - STRLEN(REPLACE(?templateMotifCigarP56709MF_00407129, CONCAT('^(?:-*[^-]){', STR(((299 - ?templateMotifSequenceMatchBeginPositionP56709130) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1141) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP56709MF_00407131, 1, (STRLEN(?targetMotifMatchCigarP56709MF_00407131) - STRLEN(REPLACE(?targetMotifMatchCigarP56709MF_00407131, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1141), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP56709MF_00407131, 1, (STRLEN(?targetMotifMatchCigarP56709MF_00407131) - STRLEN(REPLACE(?targetMotifMatchCigarP56709MF_00407131, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1141), '}'), '')))), '[^-]', ''))) AS ?step2142) . BIND(((?step2142 + ?targetMotifMatchRegionMatchBeginPositionMF_00407132) - 1) AS ?thisPositionOn45) . BIND(?thisPositionOn45 AS ?thisPositionOn46) . BIND(?this AS ?pfs1t143) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn45))) AS ?pfsb42) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn46))) AS ?pfse43) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn45, 1) = 'E')) . BIND(URI(CONCAT(STR(?this), '#MF_00407a41')) AS ?annotation41) . BIND(?this AS ?pfs40) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch148 faldo:location ?templateMotifSequenceMatchRegionP56709149 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP56709151 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP56709MF_00407144 . ?templateMotifSequenceMatchRegionP56709149 faldo:begin ?templateMotifSequenceMatchBeginP56709150 . ?templateMotifSequenceMatchBeginP56709150 faldo:position ?templateMotifSequenceMatchBeginPositionP56709145 ; faldo:reference isoform:P56709-1 . ?templateMotifSequenceProfileAlignmentOperationP56709151 edam:has_input signature:MF_00407 ; rdf:type edam:operation_0300 . ?targetMotifMatch152 faldo:location ?targetMotifMatchRegionMatch153 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00407155 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP56709MF_00407146 . ?targetMotifMatchRegionMatch153 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00407154 . ?targetMotifMatchRegionMatchBeginMF_00407154 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00407147 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_00407155 edam:has_input signature:MF_00407 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP56709MF_00407144, 1, (STRLEN(?templateMotifCigarP56709MF_00407144) - STRLEN(REPLACE(?templateMotifCigarP56709MF_00407144, CONCAT('^(?:-*[^-]){', STR(((339 - ?templateMotifSequenceMatchBeginPositionP56709145) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1156) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP56709MF_00407146, 1, (STRLEN(?targetMotifMatchCigarP56709MF_00407146) - STRLEN(REPLACE(?targetMotifMatchCigarP56709MF_00407146, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1156), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP56709MF_00407146, 1, (STRLEN(?targetMotifMatchCigarP56709MF_00407146) - STRLEN(REPLACE(?targetMotifMatchCigarP56709MF_00407146, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1156), '}'), '')))), '[^-]', ''))) AS ?step2157) . BIND(((?step2157 + ?targetMotifMatchRegionMatchBeginPositionMF_00407147) - 1) AS ?thisPositionOn52) . BIND(?thisPositionOn52 AS ?thisPositionOn53) . BIND(?this AS ?pfs1t158) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn52))) AS ?pfsb49) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn53))) AS ?pfse50) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn52, 1) = 'F')) . BIND(URI(CONCAT(STR(?this), '#MF_00407a48')) AS ?annotation48) . BIND(?this AS ?pfs47) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch163 faldo:location ?templateMotifSequenceMatchRegionP56709164 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP56709166 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP56709MF_00407159 . ?templateMotifSequenceMatchRegionP56709164 faldo:begin ?templateMotifSequenceMatchBeginP56709165 . ?templateMotifSequenceMatchBeginP56709165 faldo:position ?templateMotifSequenceMatchBeginPositionP56709160 ; faldo:reference isoform:P56709-1 . ?templateMotifSequenceProfileAlignmentOperationP56709166 edam:has_input signature:MF_00407 ; rdf:type edam:operation_0300 . ?targetMotifMatch167 faldo:location ?targetMotifMatchRegionMatch168 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00407170 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP56709MF_00407161 . ?targetMotifMatchRegionMatch168 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00407169 . ?targetMotifMatchRegionMatchBeginMF_00407169 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00407162 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_00407170 edam:has_input signature:MF_00407 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP56709MF_00407159, 1, (STRLEN(?templateMotifCigarP56709MF_00407159) - STRLEN(REPLACE(?templateMotifCigarP56709MF_00407159, CONCAT('^(?:-*[^-]){', STR(((414 - ?templateMotifSequenceMatchBeginPositionP56709160) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1171) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP56709MF_00407161, 1, (STRLEN(?targetMotifMatchCigarP56709MF_00407161) - STRLEN(REPLACE(?targetMotifMatchCigarP56709MF_00407161, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1171), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP56709MF_00407161, 1, (STRLEN(?targetMotifMatchCigarP56709MF_00407161) - STRLEN(REPLACE(?targetMotifMatchCigarP56709MF_00407161, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1171), '}'), '')))), '[^-]', ''))) AS ?step2172) . BIND(((?step2172 + ?targetMotifMatchRegionMatchBeginPositionMF_00407162) - 1) AS ?thisPositionOn59) . BIND(?thisPositionOn59 AS ?thisPositionOn60) . BIND(?this AS ?pfs1t173) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn59))) AS ?pfsb56) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn60))) AS ?pfse57) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn59, 1) = 'R')) . BIND(URI(CONCAT(STR(?this), '#MF_00407a55')) AS ?annotation55) . BIND(?this AS ?pfs54) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch178 faldo:location ?templateMotifSequenceMatchRegionP56709179 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP56709181 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP56709MF_00407174 . ?templateMotifSequenceMatchRegionP56709179 faldo:begin ?templateMotifSequenceMatchBeginP56709180 . ?templateMotifSequenceMatchBeginP56709180 faldo:position ?templateMotifSequenceMatchBeginPositionP56709175 ; faldo:reference isoform:P56709-1 . ?templateMotifSequenceProfileAlignmentOperationP56709181 edam:has_input signature:MF_00407 ; rdf:type edam:operation_0300 . ?targetMotifMatch182 faldo:location ?targetMotifMatchRegionMatch183 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00407185 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP56709MF_00407176 . ?targetMotifMatchRegionMatch183 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00407184 . ?targetMotifMatchRegionMatchBeginMF_00407184 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00407177 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_00407185 edam:has_input signature:MF_00407 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP56709MF_00407174, 1, (STRLEN(?templateMotifCigarP56709MF_00407174) - STRLEN(REPLACE(?templateMotifCigarP56709MF_00407174, CONCAT('^(?:-*[^-]){', STR(((420 - ?templateMotifSequenceMatchBeginPositionP56709175) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1186) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP56709MF_00407176, 1, (STRLEN(?targetMotifMatchCigarP56709MF_00407176) - STRLEN(REPLACE(?targetMotifMatchCigarP56709MF_00407176, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1186), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP56709MF_00407176, 1, (STRLEN(?targetMotifMatchCigarP56709MF_00407176) - STRLEN(REPLACE(?targetMotifMatchCigarP56709MF_00407176, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1186), '}'), '')))), '[^-]', ''))) AS ?step2187) . BIND(((?step2187 + ?targetMotifMatchRegionMatchBeginPositionMF_00407177) - 1) AS ?thisPositionOn66) . BIND(?thisPositionOn66 AS ?thisPositionOn67) . BIND(?this AS ?pfs1t188) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn66))) AS ?pfsb63) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn67))) AS ?pfse64) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn66, 1) = 'K')) . BIND(URI(CONCAT(STR(?this), '#MF_00407a62')) AS ?annotation62) . BIND(?this AS ?pfs61) . } OPTIONAL { ?this a up:Protein . ?this up:organism ?thisOrganism . ?thisOrganism rdfs:subClassOf+ taxon:2 . BIND(?this AS ?case4) . BIND(URI(CONCAT(STR(?this), '#MF_00407a5')) AS ?name5) . BIND(URI(CONCAT(STR(?this), '#MF_00407a6')) AS ?name6) . } OPTIONAL { ?this a up:Protein . ?this up:organism ?thisOrganism . ?thisOrganism rdfs:subClassOf+ taxon:2263 . BIND(?this AS ?case7) . BIND(URI(CONCAT(STR(?this), '#MF_00407a8')) AS ?name8) . BIND(URI(CONCAT(STR(?this), '#MF_00407a9')) AS ?name9) . } OPTIONAL { ?this a up:Protein . ?this up:organism ?thisOrganism . ?thisOrganism rdfs:subClassOf+ taxon:2157 . FILTER (! (EXISTS { ?thisOrganism rdfs:subClassOf+ taxon:2263 . })) . BIND(?this AS ?case10) . BIND(URI(CONCAT(STR(?this), '#MF_00407a11')) AS ?name11) . BIND(URI(CONCAT(STR(?this), '#MF_00407a12')) AS ?name12) . } }