CONSTRUCT { _:160260 up:source unirule:MF_00414 . _:160261 up:source unirule:MF_00414 . _:160262 up:source unirule:MF_00414 . _:160263 up:source unirule:MF_00414 . _:160264 up:source unirule:MF_00414 . _:160265 up:source unirule:MF_00414 . _:160266 up:source unirule:MF_00414 . _:160267 up:source unirule:MF_00414 . _:160268 up:source unirule:MF_00414 . _:160269 up:source unirule:MF_00414 . _:160270 up:source unirule:MF_00414 . _:160271 up:source unirule:MF_00414 . _:160272 up:source unirule:MF_00414 . _:160273 up:source unirule:MF_00414 . _:160274 up:source unirule:MF_00414 . _:160275 up:source unirule:MF_00414 . _:160276 up:source unirule:MF_00414 . _:160277 up:source unirule:MF_00414 . _:160278 up:source unirule:MF_00414 . _:160279 up:source unirule:MF_00414 . _:160280 up:source unirule:MF_00414 . _:160281 up:source unirule:MF_00414 . _:160282 up:source unirule:MF_00414 . _:160283 up:source unirule:MF_00414 . _:160284 up:source unirule:MF_00414 . _:160285 up:source unirule:MF_00414 . _:160286 up:source unirule:MF_00414 . _:160287 up:source unirule:MF_00414 . _:160288 up:source unirule:MF_00414 . _:160289 up:source unirule:MF_00414 . _:160290 up:source unirule:MF_00414 . _:160291 up:source unirule:MF_00414 . _:160292 up:source unirule:MF_00414 . _:160293 up:source unirule:MF_00414 . _:160294 up:source unirule:MF_00414 . _:160295 up:source unirule:MF_00414 . _:160296 up:source unirule:MF_00414 . _:160297 up:source unirule:MF_00414 . _:160298 up:source unirule:MF_00414 . _:160299 up:source unirule:MF_00414 . _:160300 up:source unirule:MF_00414 . ?this up:alternativeName ?name1 ; up:annotation ?annotation3 , ?annotation4 , ?annotation5 ; up:classifiedWith GO:0004672 , GO:0005886 , GO:0010795 , keyword:1003 , keyword:1133 , keyword:418 , keyword:472 , keyword:547 , keyword:67 , keyword:808 , keyword:812 , keyword:831 ; up:recommendedName ?name0 . ?name0 up:ecName '2.7.-.-' ; up:fullName 'Probable protein kinase UbiB' ; rdf:type up:Structured_Name . ?name1 up:fullName 'Ubiquinone biosynthesis protein UbiB' ; rdf:type up:Structured_Name . ?gene2 skos:prefLabel 'ubiB' . ?annotation3 a up:Function_Annotation ; rdfs:comment 'Is probably a protein kinase regulator of UbiI activity which is involved in aerobic coenzyme Q (ubiquinone) biosynthesis.' . ?annotation4 a up:Pathway_Annotation ; rdfs:comment 'Cofactor biosynthesis; ubiquinone biosynthesis [regulation].' . ?annotation5 a up:Similarity_Annotation ; rdfs:comment 'Belongs to the ABC1 family. UbiB subfamily.' . ?case6 up:classifiedWith keyword:997 . ?pfs7 up:annotation ?annotation8 . ?annotation8 faldo:begin ?pfsb9 ; faldo:end ?pfse10 ; rdf:type up:Domain_Extent_Annotation ; rdfs:comment 'Protein kinase' . ?pfsb9 faldo:position ?thisPositionOn11 ; rdf:type faldo:ExactPosition . ?pfse10 faldo:position ?thisPositionOn12 ; rdf:type faldo:ExactPosition . ?pfs13 up:annotation ?annotation14 . ?annotation14 faldo:begin ?pfsb15 ; faldo:end ?pfse16 ; up:ligand ?ligand17 ; rdf:type up:Binding_Site_Annotation . ?pfsb15 faldo:position ?thisPositionOn18 ; rdf:type faldo:ExactPosition . ?pfse16 faldo:position ?thisPositionOn19 ; rdf:type faldo:ExactPosition . ?ligand17 rdfs:subClassOf chebi:30616 . ?pfs20 up:annotation ?annotation21 . ?annotation21 faldo:begin ?pfsb22 ; faldo:end ?pfse23 ; rdf:type up:Active_Site_Annotation ; rdfs:comment 'Proton acceptor' . ?pfsb22 faldo:position ?thisPositionOn24 ; rdf:type faldo:ExactPosition . ?pfse23 faldo:position ?thisPositionOn25 ; rdf:type faldo:ExactPosition . ?pfs26 up:annotation ?annotation27 . ?annotation27 faldo:begin ?pfsb28 ; faldo:end ?pfse29 ; up:ligand ?ligand30 ; rdf:type up:Binding_Site_Annotation . ?pfsb28 faldo:position ?thisPositionOn31 ; rdf:type faldo:ExactPosition . ?pfse29 faldo:position ?thisPositionOn32 ; rdf:type faldo:ExactPosition . ?ligand30 rdfs:subClassOf chebi:30616 . ?sam33 up:classifiedWith keyword:1133 , keyword:472 , keyword:812 . ?transmembrane34 faldo:begin ?transmembraneb35 ; faldo:end ?transmembranee36 . ?transmembraneb35 faldo:position ?transmembranebp37 . ?transmembranee36 faldo:position ?transmembraneep38 . ?keyword39 up:range ?transmembrane34 . ?keyword40 up:range ?transmembrane34 . ?keyword41 up:range ?transmembrane34 . ?sam42 up:classifiedWith keyword:1133 , keyword:472 , keyword:812 . ?transmembrane43 faldo:begin ?transmembraneb44 ; faldo:end ?transmembranee45 . ?transmembraneb44 faldo:position ?transmembranebp46 . ?transmembranee45 faldo:position ?transmembraneep47 . ?keyword48 up:range ?transmembrane43 . ?keyword49 up:range ?transmembrane43 . ?keyword50 up:range ?transmembrane43 . ?sam51 up:classifiedWith keyword:1133 , keyword:472 , keyword:812 . ?transmembrane52 faldo:begin ?transmembraneb53 ; faldo:end ?transmembranee54 . ?transmembraneb53 faldo:position ?transmembranebp55 . ?transmembranee54 faldo:position ?transmembraneep56 . ?keyword57 up:range ?transmembrane52 . ?keyword58 up:range ?transmembrane52 . ?keyword59 up:range ?transmembrane52 . ?sam60 up:classifiedWith keyword:1133 , keyword:472 , keyword:812 . ?transmembrane61 faldo:begin ?transmembraneb62 ; faldo:end ?transmembranee63 . ?transmembraneb62 faldo:position ?transmembranebp64 . ?transmembranee63 faldo:position ?transmembraneep65 . ?keyword66 up:range ?transmembrane61 . ?keyword67 up:range ?transmembrane61 . ?keyword68 up:range ?transmembrane61 . ?sam69 up:classifiedWith keyword:1133 , keyword:472 , keyword:812 . ?transmembrane70 faldo:begin ?transmembraneb71 ; faldo:end ?transmembranee72 . ?transmembraneb71 faldo:position ?transmembranebp73 . ?transmembranee72 faldo:position ?transmembraneep74 . ?keyword75 up:range ?transmembrane70 . ?keyword76 up:range ?transmembrane70 . ?keyword77 up:range ?transmembrane70 . ?sam78 up:classifiedWith keyword:1133 , keyword:472 , keyword:812 . ?transmembrane79 faldo:begin ?transmembraneb80 ; faldo:end ?transmembranee81 . ?transmembraneb80 faldo:position ?transmembranebp82 . ?transmembranee81 faldo:position ?transmembraneep83 . ?keyword84 up:range ?transmembrane79 . ?keyword85 up:range ?transmembrane79 . ?keyword86 up:range ?transmembrane79 . _:160301 a rdf:Statement ; up:attribution _:160260 ; rdf:subject ?this ; rdf:predicate up:recommendedName ; rdf:object ?name0 . _:160302 a rdf:Statement ; up:attribution _:160261 ; rdf:subject ?this ; rdf:predicate up:alternativeName ; rdf:object ?name1 . _:160303 a rdf:Statement ; up:attribution _:160262 ; rdf:subject ?gene2 ; rdf:predicate up:encodedBy ; rdf:object ?gene2 . _:160304 a rdf:Statement ; up:attribution _:160263 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation3 . _:160305 a rdf:Statement ; up:attribution _:160264 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation4 . _:160306 a rdf:Statement ; up:attribution _:160265 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation5 . _:160307 a rdf:Statement ; up:attribution _:160266 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:67 . _:160308 a rdf:Statement ; up:attribution _:160267 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:1003 . _:160309 a rdf:Statement ; up:attribution _:160268 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:418 . _:160310 a rdf:Statement ; up:attribution _:160269 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:472 . _:160311 a rdf:Statement ; up:attribution _:160270 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:547 . _:160312 a rdf:Statement ; up:attribution _:160271 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:808 . _:160313 a rdf:Statement ; up:attribution _:160272 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:812 . _:160314 a rdf:Statement ; up:attribution _:160273 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:831 . _:160315 a rdf:Statement ; up:attribution _:160274 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:1133 . _:160316 a rdf:Statement ; up:attribution _:160275 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object GO:0004672 . _:160317 a rdf:Statement ; up:attribution _:160276 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object GO:0010795 . _:160318 a rdf:Statement ; up:attribution _:160277 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object GO:0005886 . _:160319 a rdf:Statement ; up:attribution _:160278 ; rdf:subject ?case6 ; rdf:predicate up:classifiedWith ; rdf:object keyword:997 . _:160320 a rdf:Statement ; up:source unirule:MF_00414 ; rdf:subject ?pfs7 ; rdf:predicate up:annotation ; rdf:object ?annotation8 . _:160321 a rdf:Statement ; up:attribution _:160279 ; rdf:subject ?pfs7 ; rdf:predicate up:annotation ; rdf:object ?annotation8 . _:160322 a rdf:Statement ; up:source unirule:MF_00414 ; rdf:subject ?pfs13 ; rdf:predicate up:annotation ; rdf:object ?annotation14 . _:160323 a rdf:Statement ; up:attribution _:160280 ; rdf:subject ?pfs13 ; rdf:predicate up:annotation ; rdf:object ?annotation14 . _:160324 a rdf:Statement ; up:source unirule:MF_00414 ; rdf:subject ?pfs20 ; rdf:predicate up:annotation ; rdf:object ?annotation21 . _:160325 a rdf:Statement ; up:attribution _:160281 ; rdf:subject ?pfs20 ; rdf:predicate up:annotation ; rdf:object ?annotation21 . _:160326 a rdf:Statement ; up:source unirule:MF_00414 ; rdf:subject ?pfs26 ; rdf:predicate up:annotation ; rdf:object ?annotation27 . _:160327 a rdf:Statement ; up:attribution _:160282 ; rdf:subject ?pfs26 ; rdf:predicate up:annotation ; rdf:object ?annotation27 . _:160328 a rdf:Statement ; up:attribution _:160283 ; rdf:subject ?sam33 ; rdf:predicate up:classifiedWith ; rdf:object keyword:472 . _:160329 a rdf:Statement ; up:attribution _:160284 ; rdf:subject ?sam33 ; rdf:predicate up:classifiedWith ; rdf:object keyword:812 . _:160330 a rdf:Statement ; up:attribution _:160285 ; rdf:subject ?sam33 ; rdf:predicate up:classifiedWith ; rdf:object keyword:1133 . _:160331 a rdf:Statement ; up:attribution _:160286 ; rdf:subject ?sam42 ; rdf:predicate up:classifiedWith ; rdf:object keyword:472 . _:160332 a rdf:Statement ; up:attribution _:160287 ; rdf:subject ?sam42 ; rdf:predicate up:classifiedWith ; rdf:object keyword:812 . _:160333 a rdf:Statement ; up:attribution _:160288 ; rdf:subject ?sam42 ; rdf:predicate up:classifiedWith ; rdf:object keyword:1133 . _:160334 a rdf:Statement ; up:attribution _:160289 ; rdf:subject ?sam51 ; rdf:predicate up:classifiedWith ; rdf:object keyword:472 . _:160335 a rdf:Statement ; up:attribution _:160290 ; rdf:subject ?sam51 ; rdf:predicate up:classifiedWith ; rdf:object keyword:812 . _:160336 a rdf:Statement ; up:attribution _:160291 ; rdf:subject ?sam51 ; rdf:predicate up:classifiedWith ; rdf:object keyword:1133 . _:160337 a rdf:Statement ; up:attribution _:160292 ; rdf:subject ?sam60 ; rdf:predicate up:classifiedWith ; rdf:object keyword:472 . _:160338 a rdf:Statement ; up:attribution _:160293 ; rdf:subject ?sam60 ; rdf:predicate up:classifiedWith ; rdf:object keyword:812 . _:160339 a rdf:Statement ; up:attribution _:160294 ; rdf:subject ?sam60 ; rdf:predicate up:classifiedWith ; rdf:object keyword:1133 . _:160340 a rdf:Statement ; up:attribution _:160295 ; rdf:subject ?sam69 ; rdf:predicate up:classifiedWith ; rdf:object keyword:472 . _:160341 a rdf:Statement ; up:attribution _:160296 ; rdf:subject ?sam69 ; rdf:predicate up:classifiedWith ; rdf:object keyword:812 . _:160342 a rdf:Statement ; up:attribution _:160297 ; rdf:subject ?sam69 ; rdf:predicate up:classifiedWith ; rdf:object keyword:1133 . _:160343 a rdf:Statement ; up:attribution _:160298 ; rdf:subject ?sam78 ; rdf:predicate up:classifiedWith ; rdf:object keyword:472 . _:160344 a rdf:Statement ; up:attribution _:160299 ; rdf:subject ?sam78 ; rdf:predicate up:classifiedWith ; rdf:object keyword:812 . _:160345 a rdf:Statement ; up:attribution _:160300 ; rdf:subject ?sam78 ; rdf:predicate up:classifiedWith ; rdf:object keyword:1133 . } WHERE { #baseURI: http://purl.uniprot.org/unirule/MF_00414 #Rule MF_00414 Created by:hamap on:2001-06-01 Modified by:ecastro on:2023-06-01 ?this up:organism ?thisOrganism ; rdfs:seeAlso signature:MF_00414 . ?thisOrganism rdfs:subClassOf+ taxon:2 . BIND(URI(CONCAT(STR(?this), '#MF_00414a0')) AS ?name0) . BIND(URI(CONCAT(STR(?this), '#MF_00414a1')) AS ?name1) . BIND(URI(CONCAT(STR(?this), '#MF_00414a3')) AS ?annotation3) . BIND(URI(CONCAT(STR(?this), '#MF_00414a4')) AS ?annotation4) . BIND(URI(CONCAT(STR(?this), '#MF_00414a5')) AS ?annotation5) . OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch91 faldo:location ?templateMotifSequenceMatchRegionP0A6A092 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0A6A094 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP0A6A0MF_0041487 . ?templateMotifSequenceMatchRegionP0A6A092 faldo:begin ?templateMotifSequenceMatchBeginP0A6A093 . ?templateMotifSequenceMatchBeginP0A6A093 faldo:position ?templateMotifSequenceMatchBeginPositionP0A6A088 ; faldo:reference isoform:P0A6A0-1 . ?templateMotifSequenceProfileAlignmentOperationP0A6A094 edam:has_input signature:MF_00414 ; rdf:type edam:operation_0300 . ?targetMotifMatch95 faldo:location ?targetMotifMatchRegionMatch96 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0041498 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP0A6A0MF_0041489 . ?targetMotifMatchRegionMatch96 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0041497 . ?targetMotifMatchRegionMatchBeginMF_0041497 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0041490 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_0041498 edam:has_input signature:MF_00414 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0A6A0MF_0041487, 1, (STRLEN(?templateMotifCigarP0A6A0MF_0041487) - STRLEN(REPLACE(?templateMotifCigarP0A6A0MF_0041487, CONCAT('^(?:-*[^-]){', STR(((124 - ?templateMotifSequenceMatchBeginPositionP0A6A088) + 1)), '}'), '')))), '[a-z]', '')) AS ?step199) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0A6A0MF_0041489, 1, (STRLEN(?targetMotifMatchCigarP0A6A0MF_0041489) - STRLEN(REPLACE(?targetMotifMatchCigarP0A6A0MF_0041489, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step199), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0A6A0MF_0041489, 1, (STRLEN(?targetMotifMatchCigarP0A6A0MF_0041489) - STRLEN(REPLACE(?targetMotifMatchCigarP0A6A0MF_0041489, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step199), '}'), '')))), '[^-]', ''))) AS ?step2100) . BIND(((?step2100 + ?targetMotifMatchRegionMatchBeginPositionMF_0041490) - 1) AS ?thisPositionOn11) . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0A6A0MF_0041487, 1, (STRLEN(?templateMotifCigarP0A6A0MF_0041487) - STRLEN(REPLACE(?templateMotifCigarP0A6A0MF_0041487, CONCAT('^(?:-*[^-]){', STR(((502 - ?templateMotifSequenceMatchBeginPositionP0A6A088) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1101) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0A6A0MF_0041489, 1, (STRLEN(?targetMotifMatchCigarP0A6A0MF_0041489) - STRLEN(REPLACE(?targetMotifMatchCigarP0A6A0MF_0041489, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1101), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0A6A0MF_0041489, 1, (STRLEN(?targetMotifMatchCigarP0A6A0MF_0041489) - STRLEN(REPLACE(?targetMotifMatchCigarP0A6A0MF_0041489, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1101), '}'), '')))), '[^-]', ''))) AS ?step2102) . BIND(((?step2102 + ?targetMotifMatchRegionMatchBeginPositionMF_0041490) - 1) AS ?thisPositionOn12) . BIND(?this AS ?pfs1t103) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn11))) AS ?pfsb9) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn12))) AS ?pfse10) . FILTER ((BOUND(?thisPositionOn11) && BOUND(?thisPositionOn12))) . BIND(URI(CONCAT(STR(?this), '#MF_00414a8')) AS ?annotation8) . BIND(?this AS ?pfs7) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch108 faldo:location ?templateMotifSequenceMatchRegionP0A6A0109 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0A6A0111 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP0A6A0MF_00414104 . ?templateMotifSequenceMatchRegionP0A6A0109 faldo:begin ?templateMotifSequenceMatchBeginP0A6A0110 . ?templateMotifSequenceMatchBeginP0A6A0110 faldo:position ?templateMotifSequenceMatchBeginPositionP0A6A0105 ; faldo:reference isoform:P0A6A0-1 . ?templateMotifSequenceProfileAlignmentOperationP0A6A0111 edam:has_input signature:MF_00414 ; rdf:type edam:operation_0300 . ?targetMotifMatch112 faldo:location ?targetMotifMatchRegionMatch113 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00414115 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP0A6A0MF_00414106 . ?targetMotifMatchRegionMatch113 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00414114 . ?targetMotifMatchRegionMatchBeginMF_00414114 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00414107 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_00414115 edam:has_input signature:MF_00414 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0A6A0MF_00414104, 1, (STRLEN(?templateMotifCigarP0A6A0MF_00414104) - STRLEN(REPLACE(?templateMotifCigarP0A6A0MF_00414104, CONCAT('^(?:-*[^-]){', STR(((130 - ?templateMotifSequenceMatchBeginPositionP0A6A0105) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1116) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0A6A0MF_00414106, 1, (STRLEN(?targetMotifMatchCigarP0A6A0MF_00414106) - STRLEN(REPLACE(?targetMotifMatchCigarP0A6A0MF_00414106, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1116), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0A6A0MF_00414106, 1, (STRLEN(?targetMotifMatchCigarP0A6A0MF_00414106) - STRLEN(REPLACE(?targetMotifMatchCigarP0A6A0MF_00414106, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1116), '}'), '')))), '[^-]', ''))) AS ?step2117) . BIND(((?step2117 + ?targetMotifMatchRegionMatchBeginPositionMF_00414107) - 1) AS ?thisPositionOn18) . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0A6A0MF_00414104, 1, (STRLEN(?templateMotifCigarP0A6A0MF_00414104) - STRLEN(REPLACE(?templateMotifCigarP0A6A0MF_00414104, CONCAT('^(?:-*[^-]){', STR(((138 - ?templateMotifSequenceMatchBeginPositionP0A6A0105) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1118) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0A6A0MF_00414106, 1, (STRLEN(?targetMotifMatchCigarP0A6A0MF_00414106) - STRLEN(REPLACE(?targetMotifMatchCigarP0A6A0MF_00414106, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1118), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0A6A0MF_00414106, 1, (STRLEN(?targetMotifMatchCigarP0A6A0MF_00414106) - STRLEN(REPLACE(?targetMotifMatchCigarP0A6A0MF_00414106, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1118), '}'), '')))), '[^-]', ''))) AS ?step2119) . BIND(((?step2119 + ?targetMotifMatchRegionMatchBeginPositionMF_00414107) - 1) AS ?thisPositionOn19) . BIND(?this AS ?pfs1t120) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn18))) AS ?pfsb15) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn19))) AS ?pfse16) . FILTER ((BOUND(?thisPositionOn18) && BOUND(?thisPositionOn19))) . BIND(URI(CONCAT(STR(?this), '#MF_00414a14')) AS ?annotation14) . BIND(?this AS ?pfs13) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch125 faldo:location ?templateMotifSequenceMatchRegionP0A6A0126 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0A6A0128 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP0A6A0MF_00414121 . ?templateMotifSequenceMatchRegionP0A6A0126 faldo:begin ?templateMotifSequenceMatchBeginP0A6A0127 . ?templateMotifSequenceMatchBeginP0A6A0127 faldo:position ?templateMotifSequenceMatchBeginPositionP0A6A0122 ; faldo:reference isoform:P0A6A0-1 . ?templateMotifSequenceProfileAlignmentOperationP0A6A0128 edam:has_input signature:MF_00414 ; rdf:type edam:operation_0300 . ?targetMotifMatch129 faldo:location ?targetMotifMatchRegionMatch130 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00414132 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP0A6A0MF_00414123 . ?targetMotifMatchRegionMatch130 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00414131 . ?targetMotifMatchRegionMatchBeginMF_00414131 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00414124 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_00414132 edam:has_input signature:MF_00414 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0A6A0MF_00414121, 1, (STRLEN(?templateMotifCigarP0A6A0MF_00414121) - STRLEN(REPLACE(?templateMotifCigarP0A6A0MF_00414121, CONCAT('^(?:-*[^-]){', STR(((288 - ?templateMotifSequenceMatchBeginPositionP0A6A0122) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1133) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0A6A0MF_00414123, 1, (STRLEN(?targetMotifMatchCigarP0A6A0MF_00414123) - STRLEN(REPLACE(?targetMotifMatchCigarP0A6A0MF_00414123, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1133), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0A6A0MF_00414123, 1, (STRLEN(?targetMotifMatchCigarP0A6A0MF_00414123) - STRLEN(REPLACE(?targetMotifMatchCigarP0A6A0MF_00414123, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1133), '}'), '')))), '[^-]', ''))) AS ?step2134) . BIND(((?step2134 + ?targetMotifMatchRegionMatchBeginPositionMF_00414124) - 1) AS ?thisPositionOn24) . BIND(?thisPositionOn24 AS ?thisPositionOn25) . BIND(?this AS ?pfs1t135) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn24))) AS ?pfsb22) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn25))) AS ?pfse23) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn24, 1) = 'D')) . BIND(URI(CONCAT(STR(?this), '#MF_00414a21')) AS ?annotation21) . BIND(?this AS ?pfs20) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch140 faldo:location ?templateMotifSequenceMatchRegionP0A6A0141 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0A6A0143 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP0A6A0MF_00414136 . ?templateMotifSequenceMatchRegionP0A6A0141 faldo:begin ?templateMotifSequenceMatchBeginP0A6A0142 . ?templateMotifSequenceMatchBeginP0A6A0142 faldo:position ?templateMotifSequenceMatchBeginPositionP0A6A0137 ; faldo:reference isoform:P0A6A0-1 . ?templateMotifSequenceProfileAlignmentOperationP0A6A0143 edam:has_input signature:MF_00414 ; rdf:type edam:operation_0300 . ?targetMotifMatch144 faldo:location ?targetMotifMatchRegionMatch145 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00414147 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP0A6A0MF_00414138 . ?targetMotifMatchRegionMatch145 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00414146 . ?targetMotifMatchRegionMatchBeginMF_00414146 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00414139 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_00414147 edam:has_input signature:MF_00414 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0A6A0MF_00414136, 1, (STRLEN(?templateMotifCigarP0A6A0MF_00414136) - STRLEN(REPLACE(?templateMotifCigarP0A6A0MF_00414136, CONCAT('^(?:-*[^-]){', STR(((153 - ?templateMotifSequenceMatchBeginPositionP0A6A0137) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1148) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0A6A0MF_00414138, 1, (STRLEN(?targetMotifMatchCigarP0A6A0MF_00414138) - STRLEN(REPLACE(?targetMotifMatchCigarP0A6A0MF_00414138, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1148), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0A6A0MF_00414138, 1, (STRLEN(?targetMotifMatchCigarP0A6A0MF_00414138) - STRLEN(REPLACE(?targetMotifMatchCigarP0A6A0MF_00414138, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1148), '}'), '')))), '[^-]', ''))) AS ?step2149) . BIND(((?step2149 + ?targetMotifMatchRegionMatchBeginPositionMF_00414139) - 1) AS ?thisPositionOn31) . BIND(?thisPositionOn31 AS ?thisPositionOn32) . BIND(?this AS ?pfs1t150) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn31))) AS ?pfsb28) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn32))) AS ?pfse29) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn31, 1) = 'K')) . BIND(URI(CONCAT(STR(?this), '#MF_00414a27')) AS ?annotation27) . BIND(?this AS ?pfs26) . } OPTIONAL { ?this a up:Protein . { ?this up:proteome <http://purl.uniprot.org/proteomes/Membrane#2>. } UNION { ?this up:proteome ?p151 . ?p151 skos:narrower <http://purl.uniprot.org/proteomes/Membrane#2>. } BIND(?this AS ?case6) . } OPTIONAL { ?this up:annotation ?samtransmembrane152 ; up:sequence ?thisSequence . ?samtransmembrane152 up:range ?samtransmembraner153 ; rdf:type up:Transmembrane_Annotation . ?samtransmembraner153 faldo:begin ?samtransmembraneb154 ; faldo:end ?samtransmembranee155 . ?samtransmembraneb154 faldo:position ?samtransmembranebp156 ; faldo:reference ?thisSequence . ?samtransmembranee155 faldo:position ?samtransmembraneep157 ; faldo:reference ?thisSequence . BIND(?this AS ?sam33) . } BIND(URI(CONCAT(STR(?this), '#MF_00414a39')) AS ?keyword39) . BIND(URI(CONCAT(STR(?this), '#MF_00414a40')) AS ?keyword40) . BIND(URI(CONCAT(STR(?this), '#MF_00414a41')) AS ?keyword41) . OPTIONAL { ?this up:annotation ?samtransmembrane158 ; up:sequence ?thisSequence . ?samtransmembrane158 up:range ?samtransmembraner159 ; rdf:type up:Transmembrane_Annotation . ?samtransmembraner159 faldo:begin ?samtransmembraneb160 ; faldo:end ?samtransmembranee161 . ?samtransmembraneb160 faldo:position ?samtransmembranebp162 ; faldo:reference ?thisSequence . ?samtransmembranee161 faldo:position ?samtransmembraneep163 ; faldo:reference ?thisSequence . BIND(?this AS ?sam42) . } BIND(URI(CONCAT(STR(?this), '#MF_00414a48')) AS ?keyword48) . BIND(URI(CONCAT(STR(?this), '#MF_00414a49')) AS ?keyword49) . BIND(URI(CONCAT(STR(?this), '#MF_00414a50')) AS ?keyword50) . OPTIONAL { ?this up:annotation ?samtransmembrane164 ; up:sequence ?thisSequence . ?samtransmembrane164 up:range ?samtransmembraner165 ; rdf:type up:Transmembrane_Annotation . ?samtransmembraner165 faldo:begin ?samtransmembraneb166 ; faldo:end ?samtransmembranee167 . ?samtransmembraneb166 faldo:position ?samtransmembranebp168 ; faldo:reference ?thisSequence . ?samtransmembranee167 faldo:position ?samtransmembraneep169 ; faldo:reference ?thisSequence . BIND(?this AS ?sam51) . } BIND(URI(CONCAT(STR(?this), '#MF_00414a57')) AS ?keyword57) . BIND(URI(CONCAT(STR(?this), '#MF_00414a58')) AS ?keyword58) . BIND(URI(CONCAT(STR(?this), '#MF_00414a59')) AS ?keyword59) . OPTIONAL { ?this up:annotation ?samtransmembrane170 ; up:sequence ?thisSequence . ?samtransmembrane170 up:range ?samtransmembraner171 ; rdf:type up:Transmembrane_Annotation . ?samtransmembraner171 faldo:begin ?samtransmembraneb172 ; faldo:end ?samtransmembranee173 . ?samtransmembraneb172 faldo:position ?samtransmembranebp174 ; faldo:reference ?thisSequence . ?samtransmembranee173 faldo:position ?samtransmembraneep175 ; faldo:reference ?thisSequence . BIND(?this AS ?sam60) . } BIND(URI(CONCAT(STR(?this), '#MF_00414a66')) AS ?keyword66) . BIND(URI(CONCAT(STR(?this), '#MF_00414a67')) AS ?keyword67) . BIND(URI(CONCAT(STR(?this), '#MF_00414a68')) AS ?keyword68) . OPTIONAL { ?this up:annotation ?samtransmembrane176 ; up:sequence ?thisSequence . ?samtransmembrane176 up:range ?samtransmembraner177 ; rdf:type up:Transmembrane_Annotation . ?samtransmembraner177 faldo:begin ?samtransmembraneb178 ; faldo:end ?samtransmembranee179 . ?samtransmembraneb178 faldo:position ?samtransmembranebp180 ; faldo:reference ?thisSequence . ?samtransmembranee179 faldo:position ?samtransmembraneep181 ; faldo:reference ?thisSequence . BIND(?this AS ?sam69) . } BIND(URI(CONCAT(STR(?this), '#MF_00414a75')) AS ?keyword75) . BIND(URI(CONCAT(STR(?this), '#MF_00414a76')) AS ?keyword76) . BIND(URI(CONCAT(STR(?this), '#MF_00414a77')) AS ?keyword77) . OPTIONAL { ?this up:annotation ?samtransmembrane182 ; up:sequence ?thisSequence . ?samtransmembrane182 up:range ?samtransmembraner183 ; rdf:type up:Transmembrane_Annotation . ?samtransmembraner183 faldo:begin ?samtransmembraneb184 ; faldo:end ?samtransmembranee185 . ?samtransmembraneb184 faldo:position ?samtransmembranebp186 ; faldo:reference ?thisSequence . ?samtransmembranee185 faldo:position ?samtransmembraneep187 ; faldo:reference ?thisSequence . BIND(?this AS ?sam78) . } BIND(URI(CONCAT(STR(?this), '#MF_00414a84')) AS ?keyword84) . BIND(URI(CONCAT(STR(?this), '#MF_00414a85')) AS ?keyword85) . BIND(URI(CONCAT(STR(?this), '#MF_00414a86')) AS ?keyword86) . }