CONSTRUCT { _:177089 up:source unirule:MF_00452 . _:177090 up:source unirule:MF_00452 . _:177091 up:source unirule:MF_00452 . _:177092 up:source unirule:MF_00452 . _:177093 up:source unirule:MF_00452 . _:177094 up:source unirule:MF_00452 . _:177095 up:source unirule:MF_00452 . _:177096 up:source unirule:MF_00452 . _:177097 up:source unirule:MF_00452 . _:177098 up:source unirule:MF_00452 . _:177099 up:source unirule:MF_00452 . _:177100 up:source unirule:MF_00452 . _:177101 up:source unirule:MF_00452 . _:177102 up:source unirule:MF_00452 . _:177103 up:source unirule:MF_00452 . _:177104 up:source unirule:MF_00452 . _:177105 up:source unirule:MF_00452 . _:177106 up:source unirule:MF_00452 . _:177107 up:source unirule:MF_00452 . _:177108 up:source unirule:MF_00452 . _:177109 up:source unirule:MF_00452 . _:177110 up:source unirule:MF_00452 . _:177111 up:source unirule:MF_00452 . _:177112 up:source unirule:MF_00452 . _:177113 up:source unirule:MF_00452 . _:177114 up:source unirule:MF_00452 . _:177115 up:source unirule:MF_00452 . _:177116 up:source unirule:MF_00452 . _:177117 up:source unirule:MF_00452 . _:177118 up:source unirule:MF_00452 . _:177119 up:source unirule:MF_00452 . _:177120 up:source unirule:MF_00452 . ?this up:alternativeName ?name1 ; up:annotation ?annotation3 , ?annotation5 , ?annotation6 , ?annotation8 ; up:classifiedWith GO:0004613 , GO:0005525 , GO:0005737 , GO:0006094 , keyword:210 , keyword:312 , keyword:342 , keyword:456 , keyword:547 , keyword:963 ; up:recommendedName ?name0 . ?name0 up:ecName '4.1.1.32' ; up:fullName 'Phosphoenolpyruvate carboxykinase [GTP]' ; up:shortName 'PEP carboxykinase' , 'PEPCK' ; rdf:type up:Structured_Name . ?name1 up:fullName 'GTP-dependent phosphoenolpyruvate carboxykinase' ; up:shortName 'GTP-PEPCK' ; rdf:type up:Structured_Name . ?gene2 skos:prefLabel 'pckG' . ?annotation3 up:activity ?activity4 ; rdf:type up:Catalytic_Activity_Annotation . ?activity4 up:catalyticActivity <http://rdf.rhea-db.org/10388>; up:enzymeClass <http://purl.uniprot.org/enzyme/4.1.1.32>. ?annotation5 a up:Pathway_Annotation ; rdfs:comment 'Carbohydrate biosynthesis; gluconeogenesis.' . ?annotation6 a up:Subcellular_Location_Annotation . ?annotation6li7 up:cellularComponent <http://purl.uniprot.org/locations/null>. ?annotation8 a up:Similarity_Annotation ; rdfs:comment 'Belongs to the phosphoenolpyruvate carboxykinase [GTP] family.' . ?case9 up:classifiedWith GO:0030145 , keyword:464 , keyword:479 . ?pfs13 up:annotation ?annotation14 , ?annotation20 , ?annotation26 . ?annotation14 faldo:begin ?pfsb15 ; faldo:end ?pfse16 ; up:ligand ?ligand17 ; rdf:type up:Binding_Site_Annotation . ?pfsb15 faldo:position ?thisPositionOn18 ; rdf:type faldo:ExactPosition . ?pfse16 faldo:position ?thisPositionOn19 ; rdf:type faldo:ExactPosition . ?ligand17 rdfs:subClassOf chebi:29035 . ?annotation20 faldo:begin ?pfsb21 ; faldo:end ?pfse22 ; up:ligand ?ligand23 ; rdf:type up:Binding_Site_Annotation . ?pfsb21 faldo:position ?thisPositionOn24 ; rdf:type faldo:ExactPosition . ?pfse22 faldo:position ?thisPositionOn25 ; rdf:type faldo:ExactPosition . ?ligand23 rdfs:subClassOf chebi:29035 . ?annotation26 faldo:begin ?pfsb27 ; faldo:end ?pfse28 ; up:ligand ?ligand29 ; rdf:type up:Binding_Site_Annotation . ?pfsb27 faldo:position ?thisPositionOn30 ; rdf:type faldo:ExactPosition . ?pfse28 faldo:position ?thisPositionOn31 ; rdf:type faldo:ExactPosition . ?ligand29 rdfs:subClassOf chebi:29035 . ?pfs32 up:annotation ?annotation33 . ?annotation33 faldo:begin ?pfsb34 ; faldo:end ?pfse35 ; up:ligand ?ligand36 ; rdf:type up:Binding_Site_Annotation . ?pfsb34 faldo:position ?thisPositionOn37 ; rdf:type faldo:ExactPosition . ?pfse35 faldo:position ?thisPositionOn38 ; rdf:type faldo:ExactPosition . ?ligand36 rdfs:subClassOf chebi:37565 . ?pfs39 up:annotation ?annotation40 . ?annotation40 faldo:begin ?pfsb41 ; faldo:end ?pfse42 ; up:ligand ?ligand43 ; rdf:type up:Binding_Site_Annotation . ?pfsb41 faldo:position ?thisPositionOn44 ; rdf:type faldo:ExactPosition . ?pfse42 faldo:position ?thisPositionOn45 ; rdf:type faldo:ExactPosition . ?ligand43 rdfs:subClassOf chebi:37565 . ?pfs46 up:annotation ?annotation47 . ?annotation47 faldo:begin ?pfsb48 ; faldo:end ?pfse49 ; up:ligand ?ligand50 ; rdf:type up:Binding_Site_Annotation . ?pfsb48 faldo:position ?thisPositionOn52 ; rdf:type faldo:ExactPosition . ?pfse49 faldo:position ?thisPositionOn53 ; rdf:type faldo:ExactPosition . ?ligand50 rdfs:subClassOf ?molecule51 . ?molecule51 rdfs:label 'substrate' . ?pfs54 up:annotation ?annotation55 . ?annotation55 faldo:begin ?pfsb56 ; faldo:end ?pfse57 ; up:ligand ?ligand58 ; rdf:type up:Binding_Site_Annotation . ?pfsb56 faldo:position ?thisPositionOn60 ; rdf:type faldo:ExactPosition . ?pfse57 faldo:position ?thisPositionOn61 ; rdf:type faldo:ExactPosition . ?ligand58 rdfs:subClassOf ?molecule59 . ?molecule59 rdfs:label 'substrate' . ?pfs62 up:annotation ?annotation63 . ?annotation63 faldo:begin ?pfsb64 ; faldo:end ?pfse65 ; rdf:type up:Active_Site_Annotation . ?pfsb64 faldo:position ?thisPositionOn66 ; rdf:type faldo:ExactPosition . ?pfse65 faldo:position ?thisPositionOn67 ; rdf:type faldo:ExactPosition . ?pfs68 up:annotation ?annotation69 . ?annotation69 faldo:begin ?pfsb70 ; faldo:end ?pfse71 ; up:ligand ?ligand72 ; rdf:type up:Binding_Site_Annotation . ?pfsb70 faldo:position ?thisPositionOn74 ; rdf:type faldo:ExactPosition . ?pfse71 faldo:position ?thisPositionOn75 ; rdf:type faldo:ExactPosition . ?ligand72 rdfs:subClassOf ?molecule73 . ?molecule73 rdfs:label 'substrate' . ?pfs76 up:annotation ?annotation77 . ?annotation77 faldo:begin ?pfsb78 ; faldo:end ?pfse79 ; up:ligand ?ligand80 ; rdf:type up:Binding_Site_Annotation . ?pfsb78 faldo:position ?thisPositionOn82 ; rdf:type faldo:ExactPosition . ?pfse79 faldo:position ?thisPositionOn83 ; rdf:type faldo:ExactPosition . ?ligand80 rdfs:subClassOf ?molecule81 . ?molecule81 rdfs:label 'substrate' . ?pfs84 up:annotation ?annotation85 . ?annotation85 faldo:begin ?pfsb86 ; faldo:end ?pfse87 ; up:ligand ?ligand88 ; rdf:type up:Binding_Site_Annotation . ?pfsb86 faldo:position ?thisPositionOn89 ; rdf:type faldo:ExactPosition . ?pfse87 faldo:position ?thisPositionOn90 ; rdf:type faldo:ExactPosition . ?ligand88 rdfs:subClassOf chebi:37565 . ?pfs91 up:annotation ?annotation92 . ?annotation92 faldo:begin ?pfsb93 ; faldo:end ?pfse94 ; up:ligand ?ligand95 ; rdf:type up:Binding_Site_Annotation . ?pfsb93 faldo:position ?thisPositionOn96 ; rdf:type faldo:ExactPosition . ?pfse94 faldo:position ?thisPositionOn97 ; rdf:type faldo:ExactPosition . ?ligand95 rdfs:subClassOf chebi:37565 . _:177121 a rdf:Statement ; up:attribution _:177089 ; rdf:subject ?this ; rdf:predicate up:recommendedName ; rdf:object ?name0 . _:177122 a rdf:Statement ; up:attribution _:177090 ; rdf:subject ?this ; rdf:predicate up:alternativeName ; rdf:object ?name1 . _:177123 a rdf:Statement ; up:attribution _:177091 ; rdf:subject ?gene2 ; rdf:predicate up:encodedBy ; rdf:object ?gene2 . _:177124 a rdf:Statement ; up:attribution _:177092 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation3 . _:177125 a rdf:Statement ; up:attribution _:177093 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation5 . _:177126 a rdf:Statement ; up:attribution _:177094 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation6 . _:177127 a rdf:Statement ; up:attribution _:177095 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation8 . _:177128 a rdf:Statement ; up:attribution _:177096 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:963 . _:177129 a rdf:Statement ; up:attribution _:177097 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:210 . _:177130 a rdf:Statement ; up:attribution _:177098 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:312 . _:177131 a rdf:Statement ; up:attribution _:177099 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:342 . _:177132 a rdf:Statement ; up:attribution _:177100 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:456 . _:177133 a rdf:Statement ; up:attribution _:177101 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:547 . _:177134 a rdf:Statement ; up:attribution _:177102 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object GO:0005525 . _:177135 a rdf:Statement ; up:attribution _:177103 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object GO:0004613 . _:177136 a rdf:Statement ; up:attribution _:177104 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object GO:0006094 . _:177137 a rdf:Statement ; up:attribution _:177105 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object GO:0005737 . _:177138 a rdf:Statement ; up:attribution _:177106 ; rdf:subject ?case9 ; rdf:predicate up:classifiedWith ; rdf:object keyword:464 . _:177139 a rdf:Statement ; up:attribution _:177107 ; rdf:subject ?case9 ; rdf:predicate up:classifiedWith ; rdf:object keyword:479 . _:177140 a rdf:Statement ; up:attribution _:177108 ; rdf:subject ?case9 ; rdf:predicate up:classifiedWith ; rdf:object GO:0030145 . _:177141 a rdf:Statement ; up:source unirule:MF_00452 ; rdf:subject ?pfs13 ; rdf:predicate up:annotation ; rdf:object ?annotation14 . _:177142 a rdf:Statement ; up:attribution _:177109 ; rdf:subject ?pfs13 ; rdf:predicate up:annotation ; rdf:object ?annotation14 . _:177143 a rdf:Statement ; up:source unirule:MF_00452 ; rdf:subject ?pfs13 ; rdf:predicate up:annotation ; rdf:object ?annotation20 . _:177144 a rdf:Statement ; up:attribution _:177110 ; rdf:subject ?pfs13 ; rdf:predicate up:annotation ; rdf:object ?annotation20 . _:177145 a rdf:Statement ; up:source unirule:MF_00452 ; rdf:subject ?pfs13 ; rdf:predicate up:annotation ; rdf:object ?annotation26 . _:177146 a rdf:Statement ; up:attribution _:177111 ; rdf:subject ?pfs13 ; rdf:predicate up:annotation ; rdf:object ?annotation26 . _:177147 a rdf:Statement ; up:source unirule:MF_00452 ; rdf:subject ?pfs32 ; rdf:predicate up:annotation ; rdf:object ?annotation33 . _:177148 a rdf:Statement ; up:attribution _:177112 ; rdf:subject ?pfs32 ; rdf:predicate up:annotation ; rdf:object ?annotation33 . _:177149 a rdf:Statement ; up:source unirule:MF_00452 ; rdf:subject ?pfs39 ; rdf:predicate up:annotation ; rdf:object ?annotation40 . _:177150 a rdf:Statement ; up:attribution _:177113 ; rdf:subject ?pfs39 ; rdf:predicate up:annotation ; rdf:object ?annotation40 . _:177151 a rdf:Statement ; up:source unirule:MF_00452 ; rdf:subject ?pfs46 ; rdf:predicate up:annotation ; rdf:object ?annotation47 . _:177152 a rdf:Statement ; up:attribution _:177114 ; rdf:subject ?pfs46 ; rdf:predicate up:annotation ; rdf:object ?annotation47 . _:177153 a rdf:Statement ; up:source unirule:MF_00452 ; rdf:subject ?pfs54 ; rdf:predicate up:annotation ; rdf:object ?annotation55 . _:177154 a rdf:Statement ; up:attribution _:177115 ; rdf:subject ?pfs54 ; rdf:predicate up:annotation ; rdf:object ?annotation55 . _:177155 a rdf:Statement ; up:source unirule:MF_00452 ; rdf:subject ?pfs62 ; rdf:predicate up:annotation ; rdf:object ?annotation63 . _:177156 a rdf:Statement ; up:attribution _:177116 ; rdf:subject ?pfs62 ; rdf:predicate up:annotation ; rdf:object ?annotation63 . _:177157 a rdf:Statement ; up:source unirule:MF_00452 ; rdf:subject ?pfs68 ; rdf:predicate up:annotation ; rdf:object ?annotation69 . _:177158 a rdf:Statement ; up:attribution _:177117 ; rdf:subject ?pfs68 ; rdf:predicate up:annotation ; rdf:object ?annotation69 . _:177159 a rdf:Statement ; up:source unirule:MF_00452 ; rdf:subject ?pfs76 ; rdf:predicate up:annotation ; rdf:object ?annotation77 . _:177160 a rdf:Statement ; up:attribution _:177118 ; rdf:subject ?pfs76 ; rdf:predicate up:annotation ; rdf:object ?annotation77 . _:177161 a rdf:Statement ; up:source unirule:MF_00452 ; rdf:subject ?pfs84 ; rdf:predicate up:annotation ; rdf:object ?annotation85 . _:177162 a rdf:Statement ; up:attribution _:177119 ; rdf:subject ?pfs84 ; rdf:predicate up:annotation ; rdf:object ?annotation85 . _:177163 a rdf:Statement ; up:source unirule:MF_00452 ; rdf:subject ?pfs91 ; rdf:predicate up:annotation ; rdf:object ?annotation92 . _:177164 a rdf:Statement ; up:attribution _:177120 ; rdf:subject ?pfs91 ; rdf:predicate up:annotation ; rdf:object ?annotation92 . } WHERE { #baseURI: http://purl.uniprot.org/unirule/MF_00452 #Rule MF_00452 Created by:bairoch on:2001-09-23 Modified by:ecastro on:2022-11-19 VALUES ?supertaxon98 {taxon:2 taxon:2157} ?this up:organism ?thisOrganism ; rdfs:seeAlso signature:MF_00452 . ?thisOrganism rdfs:subClassOf+ ?supertaxon98 . BIND(URI(CONCAT(STR(?this), '#MF_00452a0')) AS ?name0) . BIND(URI(CONCAT(STR(?this), '#MF_00452a1')) AS ?name1) . BIND(URI(CONCAT(STR(?this), '#MF_00452a3')) AS ?annotation3) . BIND(URI(CONCAT(STR(?this), '#MF_00452a5')) AS ?annotation5) . BIND(URI(CONCAT(STR(?this), '#MF_00452a6')) AS ?annotation6) . BIND(URI(CONCAT(STR(?this), '#MF_00452a8')) AS ?annotation8) . OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch103 faldo:location ?templateMotifSequenceMatchRegionA5TYT6104 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationA5TYT6106 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarA5TYT6MF_0045299 . ?templateMotifSequenceMatchRegionA5TYT6104 faldo:begin ?templateMotifSequenceMatchBeginA5TYT6105 . ?templateMotifSequenceMatchBeginA5TYT6105 faldo:position ?templateMotifSequenceMatchBeginPositionA5TYT6100 ; faldo:reference isoform:A5TYT6-1 . ?templateMotifSequenceProfileAlignmentOperationA5TYT6106 edam:has_input signature:MF_00452 ; rdf:type edam:operation_0300 . ?targetMotifMatch107 faldo:location ?targetMotifMatchRegionMatch108 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00452110 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarA5TYT6MF_00452101 . ?targetMotifMatchRegionMatch108 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00452109 . ?targetMotifMatchRegionMatchBeginMF_00452109 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00452102 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_00452110 edam:has_input signature:MF_00452 ; rdf:type edam:operation_0300 . BIND(?this AS ?tagFTGRP_1) . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarA5TYT6MF_0045299, 1, (STRLEN(?templateMotifCigarA5TYT6MF_0045299) - STRLEN(REPLACE(?templateMotifCigarA5TYT6MF_0045299, CONCAT('^(?:-*[^-]){', STR(((229 - ?templateMotifSequenceMatchBeginPositionA5TYT6100) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1111) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarA5TYT6MF_00452101, 1, (STRLEN(?targetMotifMatchCigarA5TYT6MF_00452101) - STRLEN(REPLACE(?targetMotifMatchCigarA5TYT6MF_00452101, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1111), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarA5TYT6MF_00452101, 1, (STRLEN(?targetMotifMatchCigarA5TYT6MF_00452101) - STRLEN(REPLACE(?targetMotifMatchCigarA5TYT6MF_00452101, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1111), '}'), '')))), '[^-]', ''))) AS ?step2112) . BIND(((?step2112 + ?targetMotifMatchRegionMatchBeginPositionMF_00452102) - 1) AS ?thisPositionOn18) . BIND(?thisPositionOn18 AS ?thisPositionOn19) . BIND(?this AS ?pfs1t113) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn18))) AS ?pfsb15) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn19))) AS ?pfse16) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn18, 1) = 'K')) . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarA5TYT6MF_0045299, 1, (STRLEN(?templateMotifCigarA5TYT6MF_0045299) - STRLEN(REPLACE(?templateMotifCigarA5TYT6MF_0045299, CONCAT('^(?:-*[^-]){', STR(((249 - ?templateMotifSequenceMatchBeginPositionA5TYT6100) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1114) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarA5TYT6MF_00452101, 1, (STRLEN(?targetMotifMatchCigarA5TYT6MF_00452101) - STRLEN(REPLACE(?targetMotifMatchCigarA5TYT6MF_00452101, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1114), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarA5TYT6MF_00452101, 1, (STRLEN(?targetMotifMatchCigarA5TYT6MF_00452101) - STRLEN(REPLACE(?targetMotifMatchCigarA5TYT6MF_00452101, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1114), '}'), '')))), '[^-]', ''))) AS ?step2115) . BIND(((?step2115 + ?targetMotifMatchRegionMatchBeginPositionMF_00452102) - 1) AS ?thisPositionOn24) . BIND(?thisPositionOn24 AS ?thisPositionOn25) . BIND(?this AS ?pfs1t116) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn24))) AS ?pfsb21) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn25))) AS ?pfse22) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn24, 1) = 'H')) . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarA5TYT6MF_0045299, 1, (STRLEN(?templateMotifCigarA5TYT6MF_0045299) - STRLEN(REPLACE(?templateMotifCigarA5TYT6MF_0045299, CONCAT('^(?:-*[^-]){', STR(((296 - ?templateMotifSequenceMatchBeginPositionA5TYT6100) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1117) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarA5TYT6MF_00452101, 1, (STRLEN(?targetMotifMatchCigarA5TYT6MF_00452101) - STRLEN(REPLACE(?targetMotifMatchCigarA5TYT6MF_00452101, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1117), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarA5TYT6MF_00452101, 1, (STRLEN(?targetMotifMatchCigarA5TYT6MF_00452101) - STRLEN(REPLACE(?targetMotifMatchCigarA5TYT6MF_00452101, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1117), '}'), '')))), '[^-]', ''))) AS ?step2118) . BIND(((?step2118 + ?targetMotifMatchRegionMatchBeginPositionMF_00452102) - 1) AS ?thisPositionOn30) . BIND(?thisPositionOn30 AS ?thisPositionOn31) . BIND(?this AS ?pfs1t119) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn30))) AS ?pfsb27) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn31))) AS ?pfse28) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn30, 1) = 'D')) . BIND(?this AS ?pfs13) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch124 faldo:location ?templateMotifSequenceMatchRegionA5TYT6125 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationA5TYT6127 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarA5TYT6MF_00452120 . ?templateMotifSequenceMatchRegionA5TYT6125 faldo:begin ?templateMotifSequenceMatchBeginA5TYT6126 . ?templateMotifSequenceMatchBeginA5TYT6126 faldo:position ?templateMotifSequenceMatchBeginPositionA5TYT6121 ; faldo:reference isoform:A5TYT6-1 . ?templateMotifSequenceProfileAlignmentOperationA5TYT6127 edam:has_input signature:MF_00452 ; rdf:type edam:operation_0300 . ?targetMotifMatch128 faldo:location ?targetMotifMatchRegionMatch129 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00452131 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarA5TYT6MF_00452122 . ?targetMotifMatchRegionMatch129 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00452130 . ?targetMotifMatchRegionMatchBeginMF_00452130 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00452123 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_00452131 edam:has_input signature:MF_00452 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarA5TYT6MF_00452120, 1, (STRLEN(?templateMotifCigarA5TYT6MF_00452120) - STRLEN(REPLACE(?templateMotifCigarA5TYT6MF_00452120, CONCAT('^(?:-*[^-]){', STR(((272 - ?templateMotifSequenceMatchBeginPositionA5TYT6121) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1132) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarA5TYT6MF_00452122, 1, (STRLEN(?targetMotifMatchCigarA5TYT6MF_00452122) - STRLEN(REPLACE(?targetMotifMatchCigarA5TYT6MF_00452122, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1132), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarA5TYT6MF_00452122, 1, (STRLEN(?targetMotifMatchCigarA5TYT6MF_00452122) - STRLEN(REPLACE(?targetMotifMatchCigarA5TYT6MF_00452122, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1132), '}'), '')))), '[^-]', ''))) AS ?step2133) . BIND(((?step2133 + ?targetMotifMatchRegionMatchBeginPositionMF_00452123) - 1) AS ?thisPositionOn37) . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarA5TYT6MF_00452120, 1, (STRLEN(?templateMotifCigarA5TYT6MF_00452120) - STRLEN(REPLACE(?templateMotifCigarA5TYT6MF_00452120, CONCAT('^(?:-*[^-]){', STR(((277 - ?templateMotifSequenceMatchBeginPositionA5TYT6121) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1134) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarA5TYT6MF_00452122, 1, (STRLEN(?targetMotifMatchCigarA5TYT6MF_00452122) - STRLEN(REPLACE(?targetMotifMatchCigarA5TYT6MF_00452122, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1134), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarA5TYT6MF_00452122, 1, (STRLEN(?targetMotifMatchCigarA5TYT6MF_00452122) - STRLEN(REPLACE(?targetMotifMatchCigarA5TYT6MF_00452122, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1134), '}'), '')))), '[^-]', ''))) AS ?step2135) . BIND(((?step2135 + ?targetMotifMatchRegionMatchBeginPositionMF_00452123) - 1) AS ?thisPositionOn38) . BIND(?this AS ?pfs2t136) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn37))) AS ?pfsb34) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn38))) AS ?pfse35) . FILTER (REGEX('[AGSQM][CS]GKT[NS]', SUBSTR(?thisSequenceValue, ?thisPositionOn37, (?thisPositionOn38 - ?thisPositionOn37)))) . BIND(URI(CONCAT(STR(?this), '#MF_00452a33')) AS ?annotation33) . BIND(?this AS ?pfs32) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch141 faldo:location ?templateMotifSequenceMatchRegionA5TYT6142 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationA5TYT6144 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarA5TYT6MF_00452137 . ?templateMotifSequenceMatchRegionA5TYT6142 faldo:begin ?templateMotifSequenceMatchBeginA5TYT6143 . ?templateMotifSequenceMatchBeginA5TYT6143 faldo:position ?templateMotifSequenceMatchBeginPositionA5TYT6138 ; faldo:reference isoform:A5TYT6-1 . ?templateMotifSequenceProfileAlignmentOperationA5TYT6144 edam:has_input signature:MF_00452 ; rdf:type edam:operation_0300 . ?targetMotifMatch145 faldo:location ?targetMotifMatchRegionMatch146 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00452148 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarA5TYT6MF_00452139 . ?targetMotifMatchRegionMatch146 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00452147 . ?targetMotifMatchRegionMatchBeginMF_00452147 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00452140 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_00452148 edam:has_input signature:MF_00452 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarA5TYT6MF_00452137, 1, (STRLEN(?templateMotifCigarA5TYT6MF_00452137) - STRLEN(REPLACE(?templateMotifCigarA5TYT6MF_00452137, CONCAT('^(?:-*[^-]){', STR(((515 - ?templateMotifSequenceMatchBeginPositionA5TYT6138) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1149) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarA5TYT6MF_00452139, 1, (STRLEN(?targetMotifMatchCigarA5TYT6MF_00452139) - STRLEN(REPLACE(?targetMotifMatchCigarA5TYT6MF_00452139, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1149), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarA5TYT6MF_00452139, 1, (STRLEN(?targetMotifMatchCigarA5TYT6MF_00452139) - STRLEN(REPLACE(?targetMotifMatchCigarA5TYT6MF_00452139, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1149), '}'), '')))), '[^-]', ''))) AS ?step2150) . BIND(((?step2150 + ?targetMotifMatchRegionMatchBeginPositionMF_00452140) - 1) AS ?thisPositionOn44) . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarA5TYT6MF_00452137, 1, (STRLEN(?templateMotifCigarA5TYT6MF_00452137) - STRLEN(REPLACE(?templateMotifCigarA5TYT6MF_00452137, CONCAT('^(?:-*[^-]){', STR(((518 - ?templateMotifSequenceMatchBeginPositionA5TYT6138) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1151) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarA5TYT6MF_00452139, 1, (STRLEN(?targetMotifMatchCigarA5TYT6MF_00452139) - STRLEN(REPLACE(?targetMotifMatchCigarA5TYT6MF_00452139, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1151), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarA5TYT6MF_00452139, 1, (STRLEN(?targetMotifMatchCigarA5TYT6MF_00452139) - STRLEN(REPLACE(?targetMotifMatchCigarA5TYT6MF_00452139, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1151), '}'), '')))), '[^-]', ''))) AS ?step2152) . BIND(((?step2152 + ?targetMotifMatchRegionMatchBeginPositionMF_00452140) - 1) AS ?thisPositionOn45) . BIND(?this AS ?pfs2t153) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn44))) AS ?pfsb41) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn45))) AS ?pfse42) . FILTER (REGEX('[FY][ARNDCQEGHILKMFPSTWYVBZJUOX][ARNDCQEGHILKMFPSTWYVBZJUOX]N', SUBSTR(?thisSequenceValue, ?thisPositionOn44, (?thisPositionOn45 - ?thisPositionOn44)))) . BIND(URI(CONCAT(STR(?this), '#MF_00452a40')) AS ?annotation40) . BIND(?this AS ?pfs39) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch158 faldo:location ?templateMotifSequenceMatchRegionA5TYT6159 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationA5TYT6161 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarA5TYT6MF_00452154 . ?templateMotifSequenceMatchRegionA5TYT6159 faldo:begin ?templateMotifSequenceMatchBeginA5TYT6160 . ?templateMotifSequenceMatchBeginA5TYT6160 faldo:position ?templateMotifSequenceMatchBeginPositionA5TYT6155 ; faldo:reference isoform:A5TYT6-1 . ?templateMotifSequenceProfileAlignmentOperationA5TYT6161 edam:has_input signature:MF_00452 ; rdf:type edam:operation_0300 . ?targetMotifMatch162 faldo:location ?targetMotifMatchRegionMatch163 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00452165 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarA5TYT6MF_00452156 . ?targetMotifMatchRegionMatch163 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00452164 . ?targetMotifMatchRegionMatchBeginMF_00452164 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00452157 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_00452165 edam:has_input signature:MF_00452 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarA5TYT6MF_00452154, 1, (STRLEN(?templateMotifCigarA5TYT6MF_00452154) - STRLEN(REPLACE(?templateMotifCigarA5TYT6MF_00452154, CONCAT('^(?:-*[^-]){', STR(((220 - ?templateMotifSequenceMatchBeginPositionA5TYT6155) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1166) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarA5TYT6MF_00452156, 1, (STRLEN(?targetMotifMatchCigarA5TYT6MF_00452156) - STRLEN(REPLACE(?targetMotifMatchCigarA5TYT6MF_00452156, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1166), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarA5TYT6MF_00452156, 1, (STRLEN(?targetMotifMatchCigarA5TYT6MF_00452156) - STRLEN(REPLACE(?targetMotifMatchCigarA5TYT6MF_00452156, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1166), '}'), '')))), '[^-]', ''))) AS ?step2167) . BIND(((?step2167 + ?targetMotifMatchRegionMatchBeginPositionMF_00452157) - 1) AS ?thisPositionOn52) . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarA5TYT6MF_00452154, 1, (STRLEN(?templateMotifCigarA5TYT6MF_00452154) - STRLEN(REPLACE(?templateMotifCigarA5TYT6MF_00452154, CONCAT('^(?:-*[^-]){', STR(((222 - ?templateMotifSequenceMatchBeginPositionA5TYT6155) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1168) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarA5TYT6MF_00452156, 1, (STRLEN(?targetMotifMatchCigarA5TYT6MF_00452156) - STRLEN(REPLACE(?targetMotifMatchCigarA5TYT6MF_00452156, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1168), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarA5TYT6MF_00452156, 1, (STRLEN(?targetMotifMatchCigarA5TYT6MF_00452156) - STRLEN(REPLACE(?targetMotifMatchCigarA5TYT6MF_00452156, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1168), '}'), '')))), '[^-]', ''))) AS ?step2169) . BIND(((?step2169 + ?targetMotifMatchRegionMatchBeginPositionMF_00452157) - 1) AS ?thisPositionOn53) . BIND(?this AS ?pfs2t170) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn52))) AS ?pfsb48) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn53))) AS ?pfse49) . FILTER (REGEX('Y[ARNDCQEGHILKMFPSTWYVBZJUOX]G', SUBSTR(?thisSequenceValue, ?thisPositionOn52, (?thisPositionOn53 - ?thisPositionOn52)))) . BIND(URI(CONCAT(STR(?this), '#MF_00452a47')) AS ?annotation47) . BIND(?this AS ?pfs46) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch175 faldo:location ?templateMotifSequenceMatchRegionA5TYT6176 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationA5TYT6178 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarA5TYT6MF_00452171 . ?templateMotifSequenceMatchRegionA5TYT6176 faldo:begin ?templateMotifSequenceMatchBeginA5TYT6177 . ?templateMotifSequenceMatchBeginA5TYT6177 faldo:position ?templateMotifSequenceMatchBeginPositionA5TYT6172 ; faldo:reference isoform:A5TYT6-1 . ?templateMotifSequenceProfileAlignmentOperationA5TYT6178 edam:has_input signature:MF_00452 ; rdf:type edam:operation_0300 . ?targetMotifMatch179 faldo:location ?targetMotifMatchRegionMatch180 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00452182 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarA5TYT6MF_00452173 . ?targetMotifMatchRegionMatch180 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00452181 . ?targetMotifMatchRegionMatchBeginMF_00452181 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00452174 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_00452182 edam:has_input signature:MF_00452 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarA5TYT6MF_00452171, 1, (STRLEN(?templateMotifCigarA5TYT6MF_00452171) - STRLEN(REPLACE(?templateMotifCigarA5TYT6MF_00452171, CONCAT('^(?:-*[^-]){', STR(((387 - ?templateMotifSequenceMatchBeginPositionA5TYT6172) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1183) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarA5TYT6MF_00452173, 1, (STRLEN(?targetMotifMatchCigarA5TYT6MF_00452173) - STRLEN(REPLACE(?targetMotifMatchCigarA5TYT6MF_00452173, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1183), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarA5TYT6MF_00452173, 1, (STRLEN(?targetMotifMatchCigarA5TYT6MF_00452173) - STRLEN(REPLACE(?targetMotifMatchCigarA5TYT6MF_00452173, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1183), '}'), '')))), '[^-]', ''))) AS ?step2184) . BIND(((?step2184 + ?targetMotifMatchRegionMatchBeginPositionMF_00452174) - 1) AS ?thisPositionOn60) . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarA5TYT6MF_00452171, 1, (STRLEN(?templateMotifCigarA5TYT6MF_00452171) - STRLEN(REPLACE(?templateMotifCigarA5TYT6MF_00452171, CONCAT('^(?:-*[^-]){', STR(((389 - ?templateMotifSequenceMatchBeginPositionA5TYT6172) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1185) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarA5TYT6MF_00452173, 1, (STRLEN(?targetMotifMatchCigarA5TYT6MF_00452173) - STRLEN(REPLACE(?targetMotifMatchCigarA5TYT6MF_00452173, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1185), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarA5TYT6MF_00452173, 1, (STRLEN(?targetMotifMatchCigarA5TYT6MF_00452173) - STRLEN(REPLACE(?targetMotifMatchCigarA5TYT6MF_00452173, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1185), '}'), '')))), '[^-]', ''))) AS ?step2186) . BIND(((?step2186 + ?targetMotifMatchRegionMatchBeginPositionMF_00452174) - 1) AS ?thisPositionOn61) . BIND(?this AS ?pfs2t187) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn60))) AS ?pfsb56) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn61))) AS ?pfse57) . FILTER (REGEX('N[ARNDCQEGHILKMFPSTWYVBZJUOX]R', SUBSTR(?thisSequenceValue, ?thisPositionOn60, (?thisPositionOn61 - ?thisPositionOn60)))) . BIND(URI(CONCAT(STR(?this), '#MF_00452a55')) AS ?annotation55) . BIND(?this AS ?pfs54) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch192 faldo:location ?templateMotifSequenceMatchRegionA5TYT6193 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationA5TYT6195 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarA5TYT6MF_00452188 . ?templateMotifSequenceMatchRegionA5TYT6193 faldo:begin ?templateMotifSequenceMatchBeginA5TYT6194 . ?templateMotifSequenceMatchBeginA5TYT6194 faldo:position ?templateMotifSequenceMatchBeginPositionA5TYT6189 ; faldo:reference isoform:A5TYT6-1 . ?templateMotifSequenceProfileAlignmentOperationA5TYT6195 edam:has_input signature:MF_00452 ; rdf:type edam:operation_0300 . ?targetMotifMatch196 faldo:location ?targetMotifMatchRegionMatch197 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00452199 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarA5TYT6MF_00452190 . ?targetMotifMatchRegionMatch197 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00452198 . ?targetMotifMatchRegionMatchBeginMF_00452198 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00452191 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_00452199 edam:has_input signature:MF_00452 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarA5TYT6MF_00452188, 1, (STRLEN(?templateMotifCigarA5TYT6MF_00452188) - STRLEN(REPLACE(?templateMotifCigarA5TYT6MF_00452188, CONCAT('^(?:-*[^-]){', STR(((273 - ?templateMotifSequenceMatchBeginPositionA5TYT6189) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1200) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarA5TYT6MF_00452190, 1, (STRLEN(?targetMotifMatchCigarA5TYT6MF_00452190) - STRLEN(REPLACE(?targetMotifMatchCigarA5TYT6MF_00452190, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1200), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarA5TYT6MF_00452190, 1, (STRLEN(?targetMotifMatchCigarA5TYT6MF_00452190) - STRLEN(REPLACE(?targetMotifMatchCigarA5TYT6MF_00452190, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1200), '}'), '')))), '[^-]', ''))) AS ?step2201) . BIND(((?step2201 + ?targetMotifMatchRegionMatchBeginPositionMF_00452191) - 1) AS ?thisPositionOn66) . BIND(?thisPositionOn66 AS ?thisPositionOn67) . BIND(?this AS ?pfs2t202) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn66))) AS ?pfsb64) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn67))) AS ?pfse65) . FILTER (REGEX('[CS]', SUBSTR(?thisSequenceValue, ?thisPositionOn66, 1))) . BIND(URI(CONCAT(STR(?this), '#MF_00452a63')) AS ?annotation63) . BIND(?this AS ?pfs62) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch207 faldo:location ?templateMotifSequenceMatchRegionA5TYT6208 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationA5TYT6210 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarA5TYT6MF_00452203 . ?templateMotifSequenceMatchRegionA5TYT6208 faldo:begin ?templateMotifSequenceMatchBeginA5TYT6209 . ?templateMotifSequenceMatchBeginA5TYT6209 faldo:position ?templateMotifSequenceMatchBeginPositionA5TYT6204 ; faldo:reference isoform:A5TYT6-1 . ?templateMotifSequenceProfileAlignmentOperationA5TYT6210 edam:has_input signature:MF_00452 ; rdf:type edam:operation_0300 . ?targetMotifMatch211 faldo:location ?targetMotifMatchRegionMatch212 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00452214 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarA5TYT6MF_00452205 . ?targetMotifMatchRegionMatch212 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00452213 . ?targetMotifMatchRegionMatchBeginMF_00452213 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00452206 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_00452214 edam:has_input signature:MF_00452 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarA5TYT6MF_00452203, 1, (STRLEN(?templateMotifCigarA5TYT6MF_00452203) - STRLEN(REPLACE(?templateMotifCigarA5TYT6MF_00452203, CONCAT('^(?:-*[^-]){', STR(((81 - ?templateMotifSequenceMatchBeginPositionA5TYT6204) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1215) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarA5TYT6MF_00452205, 1, (STRLEN(?targetMotifMatchCigarA5TYT6MF_00452205) - STRLEN(REPLACE(?targetMotifMatchCigarA5TYT6MF_00452205, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1215), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarA5TYT6MF_00452205, 1, (STRLEN(?targetMotifMatchCigarA5TYT6MF_00452205) - STRLEN(REPLACE(?targetMotifMatchCigarA5TYT6MF_00452205, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1215), '}'), '')))), '[^-]', ''))) AS ?step2216) . BIND(((?step2216 + ?targetMotifMatchRegionMatchBeginPositionMF_00452206) - 1) AS ?thisPositionOn74) . BIND(?thisPositionOn74 AS ?thisPositionOn75) . BIND(?this AS ?pfs2t217) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn74))) AS ?pfsb70) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn75))) AS ?pfse71) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn74, 1) = 'R')) . BIND(URI(CONCAT(STR(?this), '#MF_00452a69')) AS ?annotation69) . BIND(?this AS ?pfs68) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch222 faldo:location ?templateMotifSequenceMatchRegionA5TYT6223 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationA5TYT6225 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarA5TYT6MF_00452218 . ?templateMotifSequenceMatchRegionA5TYT6223 faldo:begin ?templateMotifSequenceMatchBeginA5TYT6224 . ?templateMotifSequenceMatchBeginA5TYT6224 faldo:position ?templateMotifSequenceMatchBeginPositionA5TYT6219 ; faldo:reference isoform:A5TYT6-1 . ?templateMotifSequenceProfileAlignmentOperationA5TYT6225 edam:has_input signature:MF_00452 ; rdf:type edam:operation_0300 . ?targetMotifMatch226 faldo:location ?targetMotifMatchRegionMatch227 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00452229 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarA5TYT6MF_00452220 . ?targetMotifMatchRegionMatch227 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00452228 . ?targetMotifMatchRegionMatchBeginMF_00452228 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00452221 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_00452229 edam:has_input signature:MF_00452 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarA5TYT6MF_00452218, 1, (STRLEN(?templateMotifCigarA5TYT6MF_00452218) - STRLEN(REPLACE(?templateMotifCigarA5TYT6MF_00452218, CONCAT('^(?:-*[^-]){', STR(((271 - ?templateMotifSequenceMatchBeginPositionA5TYT6219) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1230) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarA5TYT6MF_00452220, 1, (STRLEN(?targetMotifMatchCigarA5TYT6MF_00452220) - STRLEN(REPLACE(?targetMotifMatchCigarA5TYT6MF_00452220, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1230), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarA5TYT6MF_00452220, 1, (STRLEN(?targetMotifMatchCigarA5TYT6MF_00452220) - STRLEN(REPLACE(?targetMotifMatchCigarA5TYT6MF_00452220, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1230), '}'), '')))), '[^-]', ''))) AS ?step2231) . BIND(((?step2231 + ?targetMotifMatchRegionMatchBeginPositionMF_00452221) - 1) AS ?thisPositionOn82) . BIND(?thisPositionOn82 AS ?thisPositionOn83) . BIND(?this AS ?pfs2t232) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn82))) AS ?pfsb78) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn83))) AS ?pfse79) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn82, 1) = 'S')) . BIND(URI(CONCAT(STR(?this), '#MF_00452a77')) AS ?annotation77) . BIND(?this AS ?pfs76) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch237 faldo:location ?templateMotifSequenceMatchRegionA5TYT6238 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationA5TYT6240 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarA5TYT6MF_00452233 . ?templateMotifSequenceMatchRegionA5TYT6238 faldo:begin ?templateMotifSequenceMatchBeginA5TYT6239 . ?templateMotifSequenceMatchBeginA5TYT6239 faldo:position ?templateMotifSequenceMatchBeginPositionA5TYT6234 ; faldo:reference isoform:A5TYT6-1 . ?templateMotifSequenceProfileAlignmentOperationA5TYT6240 edam:has_input signature:MF_00452 ; rdf:type edam:operation_0300 . ?targetMotifMatch241 faldo:location ?targetMotifMatchRegionMatch242 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00452244 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarA5TYT6MF_00452235 . ?targetMotifMatchRegionMatch242 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00452243 . ?targetMotifMatchRegionMatchBeginMF_00452243 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00452236 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_00452244 edam:has_input signature:MF_00452 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarA5TYT6MF_00452233, 1, (STRLEN(?templateMotifCigarA5TYT6MF_00452233) - STRLEN(REPLACE(?templateMotifCigarA5TYT6MF_00452233, CONCAT('^(?:-*[^-]){', STR(((389 - ?templateMotifSequenceMatchBeginPositionA5TYT6234) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1245) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarA5TYT6MF_00452235, 1, (STRLEN(?targetMotifMatchCigarA5TYT6MF_00452235) - STRLEN(REPLACE(?targetMotifMatchCigarA5TYT6MF_00452235, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1245), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarA5TYT6MF_00452235, 1, (STRLEN(?targetMotifMatchCigarA5TYT6MF_00452235) - STRLEN(REPLACE(?targetMotifMatchCigarA5TYT6MF_00452235, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1245), '}'), '')))), '[^-]', ''))) AS ?step2246) . BIND(((?step2246 + ?targetMotifMatchRegionMatchBeginPositionMF_00452236) - 1) AS ?thisPositionOn89) . BIND(?thisPositionOn89 AS ?thisPositionOn90) . BIND(?this AS ?pfs2t247) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn89))) AS ?pfsb86) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn90))) AS ?pfse87) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn89, 1) = 'R')) . BIND(URI(CONCAT(STR(?this), '#MF_00452a85')) AS ?annotation85) . BIND(?this AS ?pfs84) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch252 faldo:location ?templateMotifSequenceMatchRegionA5TYT6253 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationA5TYT6255 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarA5TYT6MF_00452248 . ?templateMotifSequenceMatchRegionA5TYT6253 faldo:begin ?templateMotifSequenceMatchBeginA5TYT6254 . ?templateMotifSequenceMatchBeginA5TYT6254 faldo:position ?templateMotifSequenceMatchBeginPositionA5TYT6249 ; faldo:reference isoform:A5TYT6-1 . ?templateMotifSequenceProfileAlignmentOperationA5TYT6255 edam:has_input signature:MF_00452 ; rdf:type edam:operation_0300 . ?targetMotifMatch256 faldo:location ?targetMotifMatchRegionMatch257 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00452259 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarA5TYT6MF_00452250 . ?targetMotifMatchRegionMatch257 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00452258 . ?targetMotifMatchRegionMatchBeginMF_00452258 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00452251 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_00452259 edam:has_input signature:MF_00452 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarA5TYT6MF_00452248, 1, (STRLEN(?templateMotifCigarA5TYT6MF_00452248) - STRLEN(REPLACE(?templateMotifCigarA5TYT6MF_00452248, CONCAT('^(?:-*[^-]){', STR(((420 - ?templateMotifSequenceMatchBeginPositionA5TYT6249) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1260) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarA5TYT6MF_00452250, 1, (STRLEN(?targetMotifMatchCigarA5TYT6MF_00452250) - STRLEN(REPLACE(?targetMotifMatchCigarA5TYT6MF_00452250, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1260), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarA5TYT6MF_00452250, 1, (STRLEN(?targetMotifMatchCigarA5TYT6MF_00452250) - STRLEN(REPLACE(?targetMotifMatchCigarA5TYT6MF_00452250, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1260), '}'), '')))), '[^-]', ''))) AS ?step2261) . BIND(((?step2261 + ?targetMotifMatchRegionMatchBeginPositionMF_00452251) - 1) AS ?thisPositionOn96) . BIND(?thisPositionOn96 AS ?thisPositionOn97) . BIND(?this AS ?pfs2t262) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn96))) AS ?pfsb93) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn97))) AS ?pfse94) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn96, 1) = 'R')) . BIND(URI(CONCAT(STR(?this), '#MF_00452a92')) AS ?annotation92) . BIND(?this AS ?pfs91) . } OPTIONAL { ?this a up:Protein . BIND(?this AS ?caseWithTag263) . } BIND(IF(BOUND(?tagFTGRP_1), ?caseWithTag263, ?UNBOUND_VARIABLE) AS ?case9) . OPTIONAL { ?this a up:Protein . ?this up:organism ?thisOrganism . ?thisOrganism rdfs:subClassOf+ taxon:2 . BIND(?this AS ?case10) . } OPTIONAL { ?this a up:Protein . ?this up:organism ?thisOrganism . ?thisOrganism up:scientificName ?name264 . FILTER (CONTAINS(?containsName265, ?name264)) . BIND(?this AS ?case11) . } OPTIONAL { ?this a up:Protein . ?this up:organism ?thisOrganism . ?thisOrganism up:scientificName ?name266 . FILTER (! (CONTAINS(?containsName267, ?name266))) . BIND(?this AS ?case12) . } }