CONSTRUCT { _:208409 up:source unirule:MF_00540 . _:208410 up:source unirule:MF_00540 . _:208411 up:source unirule:MF_00540 . _:208412 up:source unirule:MF_00540 . _:208413 up:source unirule:MF_00540 . _:208414 up:source unirule:MF_00540 . _:208415 up:source unirule:MF_00540 . _:208416 up:source unirule:MF_00540 . _:208417 up:source unirule:MF_00540 . _:208418 up:source unirule:MF_00540 . _:208419 up:source unirule:MF_00540 . _:208420 up:source unirule:MF_00540 . _:208421 up:source unirule:MF_00540 . _:208422 up:source unirule:MF_00540 . _:208423 up:source unirule:MF_00540 . _:208424 up:source unirule:MF_00540 . _:208425 up:source unirule:MF_00540 . _:208426 up:source unirule:MF_00540 . _:208427 up:source unirule:MF_00540 . _:208428 up:source unirule:MF_00540 . _:208429 up:source unirule:MF_00540 . _:208430 up:source unirule:MF_00540 . _:208431 up:source unirule:MF_00540 . _:208432 up:source unirule:MF_00540 . ?this up:alternativeName ?name1 ; up:annotation ?annotation3 , ?annotation4 , ?annotation6 , ?annotation8 ; up:classifiedWith GO:0004000 , GO:0009168 , keyword:378 , keyword:546 ; up:recommendedName ?name0 . ?name0 up:ecName '3.5.4.4' ; up:fullName 'Adenosine deaminase' ; rdf:type up:Structured_Name . ?name1 up:fullName 'Adenosine aminohydrolase' ; rdf:type up:Structured_Name . ?gene2 skos:prefLabel 'add' . ?annotation3 a up:Function_Annotation ; rdfs:comment 'Catalyzes the hydrolytic deamination of adenosine and 2-deoxyadenosine.' . ?annotation4 up:activity ?activity5 ; rdf:type up:Catalytic_Activity_Annotation . ?activity5 up:catalyticActivity <http://rdf.rhea-db.org/24408>; up:enzymeClass <http://purl.uniprot.org/enzyme/3.5.4.4>. ?annotation6 up:activity ?activity7 ; rdf:type up:Catalytic_Activity_Annotation . ?activity7 up:catalyticActivity <http://rdf.rhea-db.org/28190>; up:enzymeClass <http://purl.uniprot.org/enzyme/3.5.4.4>. ?annotation8 a up:Similarity_Annotation ; rdfs:comment 'Belongs to the metallo-dependent hydrolases superfamily. Adenosine and AMP deaminases family. Adenosine deaminase subfamily.' . ?case9 up:classifiedWith GO:0008270 , keyword:479 , keyword:862 . ?pfs10 up:annotation ?annotation11 , ?annotation17 , ?annotation23 , ?annotation29 . ?annotation11 faldo:begin ?pfsb12 ; faldo:end ?pfse13 ; up:ligand ?ligand14 ; rdf:type up:Binding_Site_Annotation . ?pfsb12 faldo:position ?thisPositionOn15 ; rdf:type faldo:ExactPosition . ?pfse13 faldo:position ?thisPositionOn16 ; rdf:type faldo:ExactPosition . ?ligand14 rdfs:subClassOf chebi:29105 . ?annotation17 faldo:begin ?pfsb18 ; faldo:end ?pfse19 ; up:ligand ?ligand20 ; rdf:type up:Binding_Site_Annotation . ?pfsb18 faldo:position ?thisPositionOn21 ; rdf:type faldo:ExactPosition . ?pfse19 faldo:position ?thisPositionOn22 ; rdf:type faldo:ExactPosition . ?ligand20 rdfs:subClassOf chebi:29105 . ?annotation23 faldo:begin ?pfsb24 ; faldo:end ?pfse25 ; up:ligand ?ligand26 ; rdf:type up:Binding_Site_Annotation . ?pfsb24 faldo:position ?thisPositionOn27 ; rdf:type faldo:ExactPosition . ?pfse25 faldo:position ?thisPositionOn28 ; rdf:type faldo:ExactPosition . ?ligand26 rdfs:subClassOf chebi:29105 . ?annotation29 faldo:begin ?pfsb30 ; faldo:end ?pfse31 ; up:ligand ?ligand32 ; rdf:type up:Binding_Site_Annotation . ?pfsb30 faldo:position ?thisPositionOn33 ; rdf:type faldo:ExactPosition . ?pfse31 faldo:position ?thisPositionOn34 ; rdf:type faldo:ExactPosition . ?ligand32 rdfs:subClassOf chebi:29105 . ?pfs35 up:annotation ?annotation36 . ?annotation36 faldo:begin ?pfsb37 ; faldo:end ?pfse38 ; rdf:type up:Active_Site_Annotation ; rdfs:comment 'Proton donor' . ?pfsb37 faldo:position ?thisPositionOn39 ; rdf:type faldo:ExactPosition . ?pfse38 faldo:position ?thisPositionOn40 ; rdf:type faldo:ExactPosition . ?pfs41 up:annotation ?annotation42 . ?annotation42 faldo:begin ?pfsb43 ; faldo:end ?pfse44 ; up:ligand ?ligand45 ; rdf:type up:Binding_Site_Annotation . ?pfsb43 faldo:position ?thisPositionOn47 ; rdf:type faldo:ExactPosition . ?pfse44 faldo:position ?thisPositionOn48 ; rdf:type faldo:ExactPosition . ?ligand45 rdfs:subClassOf ?molecule46 . ?molecule46 rdfs:label 'substrate' . ?pfs49 up:annotation ?annotation50 . ?annotation50 faldo:begin ?pfsb51 ; faldo:end ?pfse52 ; up:ligand ?ligand53 ; rdf:type up:Binding_Site_Annotation . ?pfsb51 faldo:position ?thisPositionOn55 ; rdf:type faldo:ExactPosition . ?pfse52 faldo:position ?thisPositionOn56 ; rdf:type faldo:ExactPosition . ?ligand53 rdfs:subClassOf ?molecule54 . ?molecule54 rdfs:label 'substrate' . ?pfs57 up:annotation ?annotation58 . ?annotation58 faldo:begin ?pfsb59 ; faldo:end ?pfse60 ; up:ligand ?ligand61 ; rdf:type up:Binding_Site_Annotation . ?pfsb59 faldo:position ?thisPositionOn63 ; rdf:type faldo:ExactPosition . ?pfse60 faldo:position ?thisPositionOn64 ; rdf:type faldo:ExactPosition . ?ligand61 rdfs:subClassOf ?molecule62 . ?molecule62 rdfs:label 'substrate' . ?pfs65 up:annotation ?annotation66 . ?annotation66 faldo:begin ?pfsb67 ; faldo:end ?pfse68 ; up:ligand ?ligand69 ; rdf:type up:Binding_Site_Annotation . ?pfsb67 faldo:position ?thisPositionOn71 ; rdf:type faldo:ExactPosition . ?pfse68 faldo:position ?thisPositionOn72 ; rdf:type faldo:ExactPosition . ?ligand69 rdfs:subClassOf ?molecule70 . ?molecule70 rdfs:label 'substrate' . ?pfs73 up:annotation ?annotation74 . ?annotation74 faldo:begin ?pfsb75 ; faldo:end ?pfse76 ; rdf:type up:Site_Annotation ; rdfs:comment 'Important for catalytic activity' . ?pfsb75 faldo:position ?thisPositionOn77 ; rdf:type faldo:ExactPosition . ?pfse76 faldo:position ?thisPositionOn78 ; rdf:type faldo:ExactPosition . _:208433 a rdf:Statement ; up:attribution _:208409 ; rdf:subject ?this ; rdf:predicate up:recommendedName ; rdf:object ?name0 . _:208434 a rdf:Statement ; up:attribution _:208410 ; rdf:subject ?this ; rdf:predicate up:alternativeName ; rdf:object ?name1 . _:208435 a rdf:Statement ; up:attribution _:208411 ; rdf:subject ?gene2 ; rdf:predicate up:encodedBy ; rdf:object ?gene2 . _:208436 a rdf:Statement ; up:attribution _:208412 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation3 . _:208437 a rdf:Statement ; up:attribution _:208413 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation4 . _:208438 a rdf:Statement ; up:attribution _:208414 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation6 . _:208439 a rdf:Statement ; up:attribution _:208415 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation8 . _:208440 a rdf:Statement ; up:attribution _:208416 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:378 . _:208441 a rdf:Statement ; up:attribution _:208417 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:546 . _:208442 a rdf:Statement ; up:attribution _:208418 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object GO:0004000 . _:208443 a rdf:Statement ; up:attribution _:208419 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object GO:0009168 . _:208444 a rdf:Statement ; up:attribution _:208420 ; rdf:subject ?case9 ; rdf:predicate up:classifiedWith ; rdf:object keyword:479 . _:208445 a rdf:Statement ; up:attribution _:208421 ; rdf:subject ?case9 ; rdf:predicate up:classifiedWith ; rdf:object keyword:862 . _:208446 a rdf:Statement ; up:attribution _:208422 ; rdf:subject ?case9 ; rdf:predicate up:classifiedWith ; rdf:object GO:0008270 . _:208447 a rdf:Statement ; up:source unirule:MF_00540 ; rdf:subject ?pfs10 ; rdf:predicate up:annotation ; rdf:object ?annotation11 . _:208448 a rdf:Statement ; up:attribution _:208423 ; rdf:subject ?pfs10 ; rdf:predicate up:annotation ; rdf:object ?annotation11 . _:208449 a rdf:Statement ; up:source unirule:MF_00540 ; rdf:subject ?pfs10 ; rdf:predicate up:annotation ; rdf:object ?annotation17 . _:208450 a rdf:Statement ; up:attribution _:208424 ; rdf:subject ?pfs10 ; rdf:predicate up:annotation ; rdf:object ?annotation17 . _:208451 a rdf:Statement ; up:source unirule:MF_00540 ; rdf:subject ?pfs10 ; rdf:predicate up:annotation ; rdf:object ?annotation23 . _:208452 a rdf:Statement ; up:attribution _:208425 ; rdf:subject ?pfs10 ; rdf:predicate up:annotation ; rdf:object ?annotation23 . _:208453 a rdf:Statement ; up:source unirule:MF_00540 ; rdf:subject ?pfs10 ; rdf:predicate up:annotation ; rdf:object ?annotation29 . _:208454 a rdf:Statement ; up:attribution _:208426 ; rdf:subject ?pfs10 ; rdf:predicate up:annotation ; rdf:object ?annotation29 . _:208455 a rdf:Statement ; up:source unirule:MF_00540 ; rdf:subject ?pfs35 ; rdf:predicate up:annotation ; rdf:object ?annotation36 . _:208456 a rdf:Statement ; up:attribution _:208427 ; rdf:subject ?pfs35 ; rdf:predicate up:annotation ; rdf:object ?annotation36 . _:208457 a rdf:Statement ; up:source unirule:MF_00540 ; rdf:subject ?pfs41 ; rdf:predicate up:annotation ; rdf:object ?annotation42 . _:208458 a rdf:Statement ; up:attribution _:208428 ; rdf:subject ?pfs41 ; rdf:predicate up:annotation ; rdf:object ?annotation42 . _:208459 a rdf:Statement ; up:source unirule:MF_00540 ; rdf:subject ?pfs49 ; rdf:predicate up:annotation ; rdf:object ?annotation50 . _:208460 a rdf:Statement ; up:attribution _:208429 ; rdf:subject ?pfs49 ; rdf:predicate up:annotation ; rdf:object ?annotation50 . _:208461 a rdf:Statement ; up:source unirule:MF_00540 ; rdf:subject ?pfs57 ; rdf:predicate up:annotation ; rdf:object ?annotation58 . _:208462 a rdf:Statement ; up:attribution _:208430 ; rdf:subject ?pfs57 ; rdf:predicate up:annotation ; rdf:object ?annotation58 . _:208463 a rdf:Statement ; up:source unirule:MF_00540 ; rdf:subject ?pfs65 ; rdf:predicate up:annotation ; rdf:object ?annotation66 . _:208464 a rdf:Statement ; up:attribution _:208431 ; rdf:subject ?pfs65 ; rdf:predicate up:annotation ; rdf:object ?annotation66 . _:208465 a rdf:Statement ; up:source unirule:MF_00540 ; rdf:subject ?pfs73 ; rdf:predicate up:annotation ; rdf:object ?annotation74 . _:208466 a rdf:Statement ; up:attribution _:208432 ; rdf:subject ?pfs73 ; rdf:predicate up:annotation ; rdf:object ?annotation74 . } WHERE { #baseURI: http://purl.uniprot.org/unirule/MF_00540 #Rule MF_00540 Created by:bairoch on:2002-02-27 Modified by:ecastro on:2023-06-01 ?this up:organism ?thisOrganism ; rdfs:seeAlso signature:MF_00540 . ?thisOrganism rdfs:subClassOf+ taxon:2 . BIND(URI(CONCAT(STR(?this), '#MF_00540a0')) AS ?name0) . BIND(URI(CONCAT(STR(?this), '#MF_00540a1')) AS ?name1) . BIND(URI(CONCAT(STR(?this), '#MF_00540a3')) AS ?annotation3) . BIND(URI(CONCAT(STR(?this), '#MF_00540a4')) AS ?annotation4) . BIND(URI(CONCAT(STR(?this), '#MF_00540a6')) AS ?annotation6) . BIND(URI(CONCAT(STR(?this), '#MF_00540a8')) AS ?annotation8) . OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch83 faldo:location ?templateMotifSequenceMatchRegionP2233384 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP2233386 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP22333MF_0054079 . ?templateMotifSequenceMatchRegionP2233384 faldo:begin ?templateMotifSequenceMatchBeginP2233385 . ?templateMotifSequenceMatchBeginP2233385 faldo:position ?templateMotifSequenceMatchBeginPositionP2233380 ; faldo:reference isoform:P22333-1 . ?templateMotifSequenceProfileAlignmentOperationP2233386 edam:has_input signature:MF_00540 ; rdf:type edam:operation_0300 . ?targetMotifMatch87 faldo:location ?targetMotifMatchRegionMatch88 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0054090 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP22333MF_0054081 . ?targetMotifMatchRegionMatch88 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0054089 . ?targetMotifMatchRegionMatchBeginMF_0054089 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0054082 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_0054090 edam:has_input signature:MF_00540 ; rdf:type edam:operation_0300 . BIND(?this AS ?tagFTGRP_1) . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP22333MF_0054079, 1, (STRLEN(?templateMotifCigarP22333MF_0054079) - STRLEN(REPLACE(?templateMotifCigarP22333MF_0054079, CONCAT('^(?:-*[^-]){', STR(((12 - ?templateMotifSequenceMatchBeginPositionP2233380) + 1)), '}'), '')))), '[a-z]', '')) AS ?step191) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP22333MF_0054081, 1, (STRLEN(?targetMotifMatchCigarP22333MF_0054081) - STRLEN(REPLACE(?targetMotifMatchCigarP22333MF_0054081, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step191), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP22333MF_0054081, 1, (STRLEN(?targetMotifMatchCigarP22333MF_0054081) - STRLEN(REPLACE(?targetMotifMatchCigarP22333MF_0054081, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step191), '}'), '')))), '[^-]', ''))) AS ?step292) . BIND(((?step292 + ?targetMotifMatchRegionMatchBeginPositionMF_0054082) - 1) AS ?thisPositionOn15) . BIND(?thisPositionOn15 AS ?thisPositionOn16) . BIND(?this AS ?pfs1t93) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn15))) AS ?pfsb12) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn16))) AS ?pfse13) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn15, 1) = 'H')) . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP22333MF_0054079, 1, (STRLEN(?templateMotifCigarP22333MF_0054079) - STRLEN(REPLACE(?templateMotifCigarP22333MF_0054079, CONCAT('^(?:-*[^-]){', STR(((14 - ?templateMotifSequenceMatchBeginPositionP2233380) + 1)), '}'), '')))), '[a-z]', '')) AS ?step194) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP22333MF_0054081, 1, (STRLEN(?targetMotifMatchCigarP22333MF_0054081) - STRLEN(REPLACE(?targetMotifMatchCigarP22333MF_0054081, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step194), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP22333MF_0054081, 1, (STRLEN(?targetMotifMatchCigarP22333MF_0054081) - STRLEN(REPLACE(?targetMotifMatchCigarP22333MF_0054081, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step194), '}'), '')))), '[^-]', ''))) AS ?step295) . BIND(((?step295 + ?targetMotifMatchRegionMatchBeginPositionMF_0054082) - 1) AS ?thisPositionOn21) . BIND(?thisPositionOn21 AS ?thisPositionOn22) . BIND(?this AS ?pfs1t96) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn21))) AS ?pfsb18) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn22))) AS ?pfse19) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn21, 1) = 'H')) . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP22333MF_0054079, 1, (STRLEN(?templateMotifCigarP22333MF_0054079) - STRLEN(REPLACE(?templateMotifCigarP22333MF_0054079, CONCAT('^(?:-*[^-]){', STR(((197 - ?templateMotifSequenceMatchBeginPositionP2233380) + 1)), '}'), '')))), '[a-z]', '')) AS ?step197) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP22333MF_0054081, 1, (STRLEN(?targetMotifMatchCigarP22333MF_0054081) - STRLEN(REPLACE(?targetMotifMatchCigarP22333MF_0054081, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step197), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP22333MF_0054081, 1, (STRLEN(?targetMotifMatchCigarP22333MF_0054081) - STRLEN(REPLACE(?targetMotifMatchCigarP22333MF_0054081, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step197), '}'), '')))), '[^-]', ''))) AS ?step298) . BIND(((?step298 + ?targetMotifMatchRegionMatchBeginPositionMF_0054082) - 1) AS ?thisPositionOn27) . BIND(?thisPositionOn27 AS ?thisPositionOn28) . BIND(?this AS ?pfs1t99) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn27))) AS ?pfsb24) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn28))) AS ?pfse25) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn27, 1) = 'H')) . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP22333MF_0054079, 1, (STRLEN(?templateMotifCigarP22333MF_0054079) - STRLEN(REPLACE(?templateMotifCigarP22333MF_0054079, CONCAT('^(?:-*[^-]){', STR(((278 - ?templateMotifSequenceMatchBeginPositionP2233380) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1100) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP22333MF_0054081, 1, (STRLEN(?targetMotifMatchCigarP22333MF_0054081) - STRLEN(REPLACE(?targetMotifMatchCigarP22333MF_0054081, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1100), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP22333MF_0054081, 1, (STRLEN(?targetMotifMatchCigarP22333MF_0054081) - STRLEN(REPLACE(?targetMotifMatchCigarP22333MF_0054081, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1100), '}'), '')))), '[^-]', ''))) AS ?step2101) . BIND(((?step2101 + ?targetMotifMatchRegionMatchBeginPositionMF_0054082) - 1) AS ?thisPositionOn33) . BIND(?thisPositionOn33 AS ?thisPositionOn34) . BIND(?this AS ?pfs1t102) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn33))) AS ?pfsb30) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn34))) AS ?pfse31) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn33, 1) = 'D')) . BIND(?this AS ?pfs10) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch107 faldo:location ?templateMotifSequenceMatchRegionP22333108 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP22333110 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP22333MF_00540103 . ?templateMotifSequenceMatchRegionP22333108 faldo:begin ?templateMotifSequenceMatchBeginP22333109 . ?templateMotifSequenceMatchBeginP22333109 faldo:position ?templateMotifSequenceMatchBeginPositionP22333104 ; faldo:reference isoform:P22333-1 . ?templateMotifSequenceProfileAlignmentOperationP22333110 edam:has_input signature:MF_00540 ; rdf:type edam:operation_0300 . ?targetMotifMatch111 faldo:location ?targetMotifMatchRegionMatch112 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00540114 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP22333MF_00540105 . ?targetMotifMatchRegionMatch112 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00540113 . ?targetMotifMatchRegionMatchBeginMF_00540113 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00540106 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_00540114 edam:has_input signature:MF_00540 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP22333MF_00540103, 1, (STRLEN(?templateMotifCigarP22333MF_00540103) - STRLEN(REPLACE(?templateMotifCigarP22333MF_00540103, CONCAT('^(?:-*[^-]){', STR(((200 - ?templateMotifSequenceMatchBeginPositionP22333104) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1115) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP22333MF_00540105, 1, (STRLEN(?targetMotifMatchCigarP22333MF_00540105) - STRLEN(REPLACE(?targetMotifMatchCigarP22333MF_00540105, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1115), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP22333MF_00540105, 1, (STRLEN(?targetMotifMatchCigarP22333MF_00540105) - STRLEN(REPLACE(?targetMotifMatchCigarP22333MF_00540105, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1115), '}'), '')))), '[^-]', ''))) AS ?step2116) . BIND(((?step2116 + ?targetMotifMatchRegionMatchBeginPositionMF_00540106) - 1) AS ?thisPositionOn39) . BIND(?thisPositionOn39 AS ?thisPositionOn40) . BIND(?this AS ?pfs2t117) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn39))) AS ?pfsb37) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn40))) AS ?pfse38) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn39, 1) = 'E')) . BIND(URI(CONCAT(STR(?this), '#MF_00540a36')) AS ?annotation36) . BIND(?this AS ?pfs35) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch122 faldo:location ?templateMotifSequenceMatchRegionP22333123 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP22333125 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP22333MF_00540118 . ?templateMotifSequenceMatchRegionP22333123 faldo:begin ?templateMotifSequenceMatchBeginP22333124 . ?templateMotifSequenceMatchBeginP22333124 faldo:position ?templateMotifSequenceMatchBeginPositionP22333119 ; faldo:reference isoform:P22333-1 . ?templateMotifSequenceProfileAlignmentOperationP22333125 edam:has_input signature:MF_00540 ; rdf:type edam:operation_0300 . ?targetMotifMatch126 faldo:location ?targetMotifMatchRegionMatch127 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00540129 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP22333MF_00540120 . ?targetMotifMatchRegionMatch127 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00540128 . ?targetMotifMatchRegionMatchBeginMF_00540128 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00540121 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_00540129 edam:has_input signature:MF_00540 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP22333MF_00540118, 1, (STRLEN(?templateMotifCigarP22333MF_00540118) - STRLEN(REPLACE(?templateMotifCigarP22333MF_00540118, CONCAT('^(?:-*[^-]){', STR(((14 - ?templateMotifSequenceMatchBeginPositionP22333119) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1130) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP22333MF_00540120, 1, (STRLEN(?targetMotifMatchCigarP22333MF_00540120) - STRLEN(REPLACE(?targetMotifMatchCigarP22333MF_00540120, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1130), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP22333MF_00540120, 1, (STRLEN(?targetMotifMatchCigarP22333MF_00540120) - STRLEN(REPLACE(?targetMotifMatchCigarP22333MF_00540120, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1130), '}'), '')))), '[^-]', ''))) AS ?step2131) . BIND(((?step2131 + ?targetMotifMatchRegionMatchBeginPositionMF_00540121) - 1) AS ?thisPositionOn47) . BIND(?thisPositionOn47 AS ?thisPositionOn48) . BIND(?this AS ?pfs2t132) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn47))) AS ?pfsb43) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn48))) AS ?pfse44) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn47, 1) = 'H')) . BIND(URI(CONCAT(STR(?this), '#MF_00540a42')) AS ?annotation42) . BIND(?this AS ?pfs41) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch137 faldo:location ?templateMotifSequenceMatchRegionP22333138 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP22333140 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP22333MF_00540133 . ?templateMotifSequenceMatchRegionP22333138 faldo:begin ?templateMotifSequenceMatchBeginP22333139 . ?templateMotifSequenceMatchBeginP22333139 faldo:position ?templateMotifSequenceMatchBeginPositionP22333134 ; faldo:reference isoform:P22333-1 . ?templateMotifSequenceProfileAlignmentOperationP22333140 edam:has_input signature:MF_00540 ; rdf:type edam:operation_0300 . ?targetMotifMatch141 faldo:location ?targetMotifMatchRegionMatch142 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00540144 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP22333MF_00540135 . ?targetMotifMatchRegionMatch142 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00540143 . ?targetMotifMatchRegionMatchBeginMF_00540143 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00540136 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_00540144 edam:has_input signature:MF_00540 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP22333MF_00540133, 1, (STRLEN(?templateMotifCigarP22333MF_00540133) - STRLEN(REPLACE(?templateMotifCigarP22333MF_00540133, CONCAT('^(?:-*[^-]){', STR(((16 - ?templateMotifSequenceMatchBeginPositionP22333134) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1145) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP22333MF_00540135, 1, (STRLEN(?targetMotifMatchCigarP22333MF_00540135) - STRLEN(REPLACE(?targetMotifMatchCigarP22333MF_00540135, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1145), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP22333MF_00540135, 1, (STRLEN(?targetMotifMatchCigarP22333MF_00540135) - STRLEN(REPLACE(?targetMotifMatchCigarP22333MF_00540135, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1145), '}'), '')))), '[^-]', ''))) AS ?step2146) . BIND(((?step2146 + ?targetMotifMatchRegionMatchBeginPositionMF_00540136) - 1) AS ?thisPositionOn55) . BIND(?thisPositionOn55 AS ?thisPositionOn56) . BIND(?this AS ?pfs2t147) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn55))) AS ?pfsb51) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn56))) AS ?pfse52) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn55, 1) = 'D')) . BIND(URI(CONCAT(STR(?this), '#MF_00540a50')) AS ?annotation50) . BIND(?this AS ?pfs49) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch152 faldo:location ?templateMotifSequenceMatchRegionP22333153 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP22333155 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP22333MF_00540148 . ?templateMotifSequenceMatchRegionP22333153 faldo:begin ?templateMotifSequenceMatchBeginP22333154 . ?templateMotifSequenceMatchBeginP22333154 faldo:position ?templateMotifSequenceMatchBeginPositionP22333149 ; faldo:reference isoform:P22333-1 . ?templateMotifSequenceProfileAlignmentOperationP22333155 edam:has_input signature:MF_00540 ; rdf:type edam:operation_0300 . ?targetMotifMatch156 faldo:location ?targetMotifMatchRegionMatch157 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00540159 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP22333MF_00540150 . ?targetMotifMatchRegionMatch157 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00540158 . ?targetMotifMatchRegionMatchBeginMF_00540158 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00540151 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_00540159 edam:has_input signature:MF_00540 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP22333MF_00540148, 1, (STRLEN(?templateMotifCigarP22333MF_00540148) - STRLEN(REPLACE(?templateMotifCigarP22333MF_00540148, CONCAT('^(?:-*[^-]){', STR(((170 - ?templateMotifSequenceMatchBeginPositionP22333149) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1160) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP22333MF_00540150, 1, (STRLEN(?targetMotifMatchCigarP22333MF_00540150) - STRLEN(REPLACE(?targetMotifMatchCigarP22333MF_00540150, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1160), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP22333MF_00540150, 1, (STRLEN(?targetMotifMatchCigarP22333MF_00540150) - STRLEN(REPLACE(?targetMotifMatchCigarP22333MF_00540150, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1160), '}'), '')))), '[^-]', ''))) AS ?step2161) . BIND(((?step2161 + ?targetMotifMatchRegionMatchBeginPositionMF_00540151) - 1) AS ?thisPositionOn63) . BIND(?thisPositionOn63 AS ?thisPositionOn64) . BIND(?this AS ?pfs2t162) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn63))) AS ?pfsb59) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn64))) AS ?pfse60) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn63, 1) = 'G')) . BIND(URI(CONCAT(STR(?this), '#MF_00540a58')) AS ?annotation58) . BIND(?this AS ?pfs57) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch167 faldo:location ?templateMotifSequenceMatchRegionP22333168 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP22333170 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP22333MF_00540163 . ?templateMotifSequenceMatchRegionP22333168 faldo:begin ?templateMotifSequenceMatchBeginP22333169 . ?templateMotifSequenceMatchBeginP22333169 faldo:position ?templateMotifSequenceMatchBeginPositionP22333164 ; faldo:reference isoform:P22333-1 . ?templateMotifSequenceProfileAlignmentOperationP22333170 edam:has_input signature:MF_00540 ; rdf:type edam:operation_0300 . ?targetMotifMatch171 faldo:location ?targetMotifMatchRegionMatch172 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00540174 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP22333MF_00540165 . ?targetMotifMatchRegionMatch172 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00540173 . ?targetMotifMatchRegionMatchBeginMF_00540173 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00540166 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_00540174 edam:has_input signature:MF_00540 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP22333MF_00540163, 1, (STRLEN(?templateMotifCigarP22333MF_00540163) - STRLEN(REPLACE(?templateMotifCigarP22333MF_00540163, CONCAT('^(?:-*[^-]){', STR(((279 - ?templateMotifSequenceMatchBeginPositionP22333164) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1175) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP22333MF_00540165, 1, (STRLEN(?targetMotifMatchCigarP22333MF_00540165) - STRLEN(REPLACE(?targetMotifMatchCigarP22333MF_00540165, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1175), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP22333MF_00540165, 1, (STRLEN(?targetMotifMatchCigarP22333MF_00540165) - STRLEN(REPLACE(?targetMotifMatchCigarP22333MF_00540165, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1175), '}'), '')))), '[^-]', ''))) AS ?step2176) . BIND(((?step2176 + ?targetMotifMatchRegionMatchBeginPositionMF_00540166) - 1) AS ?thisPositionOn71) . BIND(?thisPositionOn71 AS ?thisPositionOn72) . BIND(?this AS ?pfs2t177) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn71))) AS ?pfsb67) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn72))) AS ?pfse68) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn71, 1) = 'D')) . BIND(URI(CONCAT(STR(?this), '#MF_00540a66')) AS ?annotation66) . BIND(?this AS ?pfs65) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch182 faldo:location ?templateMotifSequenceMatchRegionP22333183 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP22333185 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP22333MF_00540178 . ?templateMotifSequenceMatchRegionP22333183 faldo:begin ?templateMotifSequenceMatchBeginP22333184 . ?templateMotifSequenceMatchBeginP22333184 faldo:position ?templateMotifSequenceMatchBeginPositionP22333179 ; faldo:reference isoform:P22333-1 . ?templateMotifSequenceProfileAlignmentOperationP22333185 edam:has_input signature:MF_00540 ; rdf:type edam:operation_0300 . ?targetMotifMatch186 faldo:location ?targetMotifMatchRegionMatch187 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00540189 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP22333MF_00540180 . ?targetMotifMatchRegionMatch187 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00540188 . ?targetMotifMatchRegionMatchBeginMF_00540188 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00540181 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_00540189 edam:has_input signature:MF_00540 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP22333MF_00540178, 1, (STRLEN(?templateMotifCigarP22333MF_00540178) - STRLEN(REPLACE(?templateMotifCigarP22333MF_00540178, CONCAT('^(?:-*[^-]){', STR(((221 - ?templateMotifSequenceMatchBeginPositionP22333179) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1190) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP22333MF_00540180, 1, (STRLEN(?targetMotifMatchCigarP22333MF_00540180) - STRLEN(REPLACE(?targetMotifMatchCigarP22333MF_00540180, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1190), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP22333MF_00540180, 1, (STRLEN(?targetMotifMatchCigarP22333MF_00540180) - STRLEN(REPLACE(?targetMotifMatchCigarP22333MF_00540180, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1190), '}'), '')))), '[^-]', ''))) AS ?step2191) . BIND(((?step2191 + ?targetMotifMatchRegionMatchBeginPositionMF_00540181) - 1) AS ?thisPositionOn77) . BIND(?thisPositionOn77 AS ?thisPositionOn78) . BIND(?this AS ?pfs2t192) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn77))) AS ?pfsb75) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn78))) AS ?pfse76) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn77, 1) = 'H')) . BIND(URI(CONCAT(STR(?this), '#MF_00540a74')) AS ?annotation74) . BIND(?this AS ?pfs73) . } OPTIONAL { ?this a up:Protein . BIND(?this AS ?caseWithTag193) . } BIND(IF(BOUND(?tagFTGRP_1), ?caseWithTag193, ?UNBOUND_VARIABLE) AS ?case9) . }