CONSTRUCT { _:211830 up:source unirule:MF_00550 . _:211831 up:source unirule:MF_00550 . _:211832 up:source unirule:MF_00550 . _:211833 up:source unirule:MF_00550 . _:211834 up:source unirule:MF_00550 . _:211835 up:source unirule:MF_00550 . _:211836 up:source unirule:MF_00550 . _:211837 up:source unirule:MF_00550 . _:211838 up:source unirule:MF_00550 . _:211839 up:source unirule:MF_00550 . _:211840 up:source unirule:MF_00550 . _:211841 up:source unirule:MF_00550 . _:211842 up:source unirule:MF_00550 . _:211843 up:source unirule:MF_00550 . _:211844 up:source unirule:MF_00550 . _:211845 up:source unirule:MF_00550 . _:211846 up:source unirule:MF_00550 . _:211847 up:source unirule:MF_00550 . _:211848 up:source unirule:MF_00550 . _:211849 up:source unirule:MF_00550 . _:211850 up:source unirule:MF_00550 . _:211851 up:source unirule:MF_00550 . _:211852 up:source unirule:MF_00550 . _:211853 up:source unirule:MF_00550 . _:211854 up:source unirule:MF_00550 . _:211855 up:source unirule:MF_00550 . _:211856 up:source unirule:MF_00550 . _:211857 up:source unirule:MF_00550 . _:211858 up:source unirule:MF_00550 . ?this up:alternativeName ?name1 , ?name2 ; up:annotation ?annotation4 , ?annotation5 , ?annotation7 , ?annotation8 , ?annotation10 ; up:classifiedWith GO:0005737 , GO:0006508 , GO:0008270 , GO:0043171 , GO:0045148 , keyword:31 , keyword:378 , keyword:479 , keyword:482 , keyword:645 , keyword:862 , keyword:963 ; up:recommendedName ?name0 . ?name0 up:ecName '3.4.11.4' ; up:fullName 'Peptidase T' ; rdf:type up:Structured_Name . ?name1 up:fullName 'Aminotripeptidase' ; up:shortName 'Tripeptidase' ; rdf:type up:Structured_Name . ?name2 up:fullName 'Tripeptide aminopeptidase' ; rdf:type up:Structured_Name . ?gene3 skos:prefLabel 'pepT' . ?annotation4 a up:Function_Annotation ; rdfs:comment 'Cleaves the N-terminal amino acid of tripeptides.' . ?annotation5 up:activity ?activity6 ; rdf:type up:Catalytic_Activity_Annotation . ?activity6 up:enzymeClass <http://purl.uniprot.org/enzyme/3.4.11.4>. ?annotation7 up:cofactor chebi:29105 ; rdf:type up:Cofactor_Annotation ; rdfs:comment 'Binds 2 Zn(2+) ions per subunit.' . ?annotation8 a up:Subcellular_Location_Annotation . ?annotation8li9 up:cellularComponent <http://purl.uniprot.org/locations/null>. ?annotation10 a up:Similarity_Annotation ; rdfs:comment 'Belongs to the peptidase M20B family.' . ?pfs11 up:annotation ?annotation12 . ?annotation12 faldo:begin ?pfsb13 ; faldo:end ?pfse14 ; rdf:type up:Active_Site_Annotation . ?pfsb13 faldo:position ?thisPositionOn15 ; rdf:type faldo:ExactPosition . ?pfse14 faldo:position ?thisPositionOn16 ; rdf:type faldo:ExactPosition . ?pfs17 up:annotation ?annotation18 . ?annotation18 faldo:begin ?pfsb19 ; faldo:end ?pfse20 ; rdf:type up:Active_Site_Annotation ; rdfs:comment 'Proton acceptor' . ?pfsb19 faldo:position ?thisPositionOn21 ; rdf:type faldo:ExactPosition . ?pfse20 faldo:position ?thisPositionOn22 ; rdf:type faldo:ExactPosition . ?pfs23 up:annotation ?annotation24 . ?annotation24 faldo:begin ?pfsb25 ; faldo:end ?pfse26 ; up:ligand ?ligand27 ; rdf:type up:Binding_Site_Annotation . ?pfsb25 faldo:position ?thisPositionOn28 ; rdf:type faldo:ExactPosition . ?pfse26 faldo:position ?thisPositionOn29 ; rdf:type faldo:ExactPosition . ?ligand27 rdfs:subClassOf chebi:29105 . ?pfs30 up:annotation ?annotation31 . ?annotation31 faldo:begin ?pfsb32 ; faldo:end ?pfse33 ; up:ligand ?ligand34 ; rdf:type up:Binding_Site_Annotation . ?pfsb32 faldo:position ?thisPositionOn35 ; rdf:type faldo:ExactPosition . ?pfse33 faldo:position ?thisPositionOn36 ; rdf:type faldo:ExactPosition . ?ligand34 rdfs:subClassOf chebi:29105 . ?pfs37 up:annotation ?annotation38 . ?annotation38 faldo:begin ?pfsb39 ; faldo:end ?pfse40 ; up:ligand ?ligand41 ; rdf:type up:Binding_Site_Annotation . ?pfsb39 faldo:position ?thisPositionOn42 ; rdf:type faldo:ExactPosition . ?pfse40 faldo:position ?thisPositionOn43 ; rdf:type faldo:ExactPosition . ?ligand41 rdfs:subClassOf chebi:29105 . ?pfs44 up:annotation ?annotation45 . ?annotation45 faldo:begin ?pfsb46 ; faldo:end ?pfse47 ; up:ligand ?ligand48 ; rdf:type up:Binding_Site_Annotation . ?pfsb46 faldo:position ?thisPositionOn49 ; rdf:type faldo:ExactPosition . ?pfse47 faldo:position ?thisPositionOn50 ; rdf:type faldo:ExactPosition . ?ligand48 rdfs:subClassOf chebi:29105 . ?pfs51 up:annotation ?annotation52 . ?annotation52 faldo:begin ?pfsb53 ; faldo:end ?pfse54 ; up:ligand ?ligand55 ; rdf:type up:Binding_Site_Annotation . ?pfsb53 faldo:position ?thisPositionOn56 ; rdf:type faldo:ExactPosition . ?pfse54 faldo:position ?thisPositionOn57 ; rdf:type faldo:ExactPosition . ?ligand55 rdfs:subClassOf chebi:29105 . ?pfs58 up:annotation ?annotation59 . ?annotation59 faldo:begin ?pfsb60 ; faldo:end ?pfse61 ; up:ligand ?ligand62 ; rdf:type up:Binding_Site_Annotation . ?pfsb60 faldo:position ?thisPositionOn63 ; rdf:type faldo:ExactPosition . ?pfse61 faldo:position ?thisPositionOn64 ; rdf:type faldo:ExactPosition . ?ligand62 rdfs:subClassOf chebi:29105 . _:211859 a rdf:Statement ; up:attribution _:211830 ; rdf:subject ?this ; rdf:predicate up:recommendedName ; rdf:object ?name0 . _:211860 a rdf:Statement ; up:attribution _:211831 ; rdf:subject ?this ; rdf:predicate up:alternativeName ; rdf:object ?name1 . _:211861 a rdf:Statement ; up:attribution _:211832 ; rdf:subject ?this ; rdf:predicate up:alternativeName ; rdf:object ?name2 . _:211862 a rdf:Statement ; up:attribution _:211833 ; rdf:subject ?gene3 ; rdf:predicate up:encodedBy ; rdf:object ?gene3 . _:211863 a rdf:Statement ; up:attribution _:211834 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation4 . _:211864 a rdf:Statement ; up:attribution _:211835 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation5 . _:211865 a rdf:Statement ; up:attribution _:211836 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation7 . _:211866 a rdf:Statement ; up:attribution _:211837 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation8 . _:211867 a rdf:Statement ; up:attribution _:211838 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation10 . _:211868 a rdf:Statement ; up:attribution _:211839 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:963 . _:211869 a rdf:Statement ; up:attribution _:211840 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:378 . _:211870 a rdf:Statement ; up:attribution _:211841 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:645 . _:211871 a rdf:Statement ; up:attribution _:211842 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:31 . _:211872 a rdf:Statement ; up:attribution _:211843 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:482 . _:211873 a rdf:Statement ; up:attribution _:211844 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:479 . _:211874 a rdf:Statement ; up:attribution _:211845 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:862 . _:211875 a rdf:Statement ; up:attribution _:211846 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object GO:0045148 . _:211876 a rdf:Statement ; up:attribution _:211847 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object GO:0008270 . _:211877 a rdf:Statement ; up:attribution _:211848 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object GO:0006508 . _:211878 a rdf:Statement ; up:attribution _:211849 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object GO:0043171 . _:211879 a rdf:Statement ; up:attribution _:211850 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object GO:0005737 . _:211880 a rdf:Statement ; up:source unirule:MF_00550 ; rdf:subject ?pfs11 ; rdf:predicate up:annotation ; rdf:object ?annotation12 . _:211881 a rdf:Statement ; up:attribution _:211851 ; rdf:subject ?pfs11 ; rdf:predicate up:annotation ; rdf:object ?annotation12 . _:211882 a rdf:Statement ; up:source unirule:MF_00550 ; rdf:subject ?pfs17 ; rdf:predicate up:annotation ; rdf:object ?annotation18 . _:211883 a rdf:Statement ; up:attribution _:211852 ; rdf:subject ?pfs17 ; rdf:predicate up:annotation ; rdf:object ?annotation18 . _:211884 a rdf:Statement ; up:source unirule:MF_00550 ; rdf:subject ?pfs23 ; rdf:predicate up:annotation ; rdf:object ?annotation24 . _:211885 a rdf:Statement ; up:attribution _:211853 ; rdf:subject ?pfs23 ; rdf:predicate up:annotation ; rdf:object ?annotation24 . _:211886 a rdf:Statement ; up:source unirule:MF_00550 ; rdf:subject ?pfs30 ; rdf:predicate up:annotation ; rdf:object ?annotation31 . _:211887 a rdf:Statement ; up:attribution _:211854 ; rdf:subject ?pfs30 ; rdf:predicate up:annotation ; rdf:object ?annotation31 . _:211888 a rdf:Statement ; up:source unirule:MF_00550 ; rdf:subject ?pfs37 ; rdf:predicate up:annotation ; rdf:object ?annotation38 . _:211889 a rdf:Statement ; up:attribution _:211855 ; rdf:subject ?pfs37 ; rdf:predicate up:annotation ; rdf:object ?annotation38 . _:211890 a rdf:Statement ; up:source unirule:MF_00550 ; rdf:subject ?pfs44 ; rdf:predicate up:annotation ; rdf:object ?annotation45 . _:211891 a rdf:Statement ; up:attribution _:211856 ; rdf:subject ?pfs44 ; rdf:predicate up:annotation ; rdf:object ?annotation45 . _:211892 a rdf:Statement ; up:source unirule:MF_00550 ; rdf:subject ?pfs51 ; rdf:predicate up:annotation ; rdf:object ?annotation52 . _:211893 a rdf:Statement ; up:attribution _:211857 ; rdf:subject ?pfs51 ; rdf:predicate up:annotation ; rdf:object ?annotation52 . _:211894 a rdf:Statement ; up:source unirule:MF_00550 ; rdf:subject ?pfs58 ; rdf:predicate up:annotation ; rdf:object ?annotation59 . _:211895 a rdf:Statement ; up:attribution _:211858 ; rdf:subject ?pfs58 ; rdf:predicate up:annotation ; rdf:object ?annotation59 . } WHERE { #baseURI: http://purl.uniprot.org/unirule/MF_00550 #Rule MF_00550 Created by:bairoch on:2002-04-26 Modified by:ecastro on:2023-06-01 ?this up:organism ?thisOrganism ; rdfs:seeAlso signature:MF_00550 . ?thisOrganism rdfs:subClassOf+ taxon:2 . BIND(URI(CONCAT(STR(?this), '#MF_00550a0')) AS ?name0) . BIND(URI(CONCAT(STR(?this), '#MF_00550a1')) AS ?name1) . BIND(URI(CONCAT(STR(?this), '#MF_00550a2')) AS ?name2) . BIND(URI(CONCAT(STR(?this), '#MF_00550a4')) AS ?annotation4) . BIND(URI(CONCAT(STR(?this), '#MF_00550a5')) AS ?annotation5) . BIND(URI(CONCAT(STR(?this), '#MF_00550a7')) AS ?annotation7) . BIND(URI(CONCAT(STR(?this), '#MF_00550a8')) AS ?annotation8) . BIND(URI(CONCAT(STR(?this), '#MF_00550a10')) AS ?annotation10) . OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch69 faldo:location ?templateMotifSequenceMatchRegionP2631170 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP2631172 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP26311MF_0055065 . ?templateMotifSequenceMatchRegionP2631170 faldo:begin ?templateMotifSequenceMatchBeginP2631171 . ?templateMotifSequenceMatchBeginP2631171 faldo:position ?templateMotifSequenceMatchBeginPositionP2631166 ; faldo:reference isoform:P26311-1 . ?templateMotifSequenceProfileAlignmentOperationP2631172 edam:has_input signature:MF_00550 ; rdf:type edam:operation_0300 . ?targetMotifMatch73 faldo:location ?targetMotifMatchRegionMatch74 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0055076 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP26311MF_0055067 . ?targetMotifMatchRegionMatch74 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0055075 . ?targetMotifMatchRegionMatchBeginMF_0055075 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0055068 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_0055076 edam:has_input signature:MF_00550 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP26311MF_0055065, 1, (STRLEN(?templateMotifCigarP26311MF_0055065) - STRLEN(REPLACE(?templateMotifCigarP26311MF_0055065, CONCAT('^(?:-*[^-]){', STR(((80 - ?templateMotifSequenceMatchBeginPositionP2631166) + 1)), '}'), '')))), '[a-z]', '')) AS ?step177) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP26311MF_0055067, 1, (STRLEN(?targetMotifMatchCigarP26311MF_0055067) - STRLEN(REPLACE(?targetMotifMatchCigarP26311MF_0055067, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step177), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP26311MF_0055067, 1, (STRLEN(?targetMotifMatchCigarP26311MF_0055067) - STRLEN(REPLACE(?targetMotifMatchCigarP26311MF_0055067, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step177), '}'), '')))), '[^-]', ''))) AS ?step278) . BIND(((?step278 + ?targetMotifMatchRegionMatchBeginPositionMF_0055068) - 1) AS ?thisPositionOn15) . BIND(?thisPositionOn15 AS ?thisPositionOn16) . BIND(?this AS ?pfs1t79) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn15))) AS ?pfsb13) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn16))) AS ?pfse14) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn15, 1) = 'D')) . BIND(URI(CONCAT(STR(?this), '#MF_00550a12')) AS ?annotation12) . BIND(?this AS ?pfs11) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch84 faldo:location ?templateMotifSequenceMatchRegionP2631185 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP2631187 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP26311MF_0055080 . ?templateMotifSequenceMatchRegionP2631185 faldo:begin ?templateMotifSequenceMatchBeginP2631186 . ?templateMotifSequenceMatchBeginP2631186 faldo:position ?templateMotifSequenceMatchBeginPositionP2631181 ; faldo:reference isoform:P26311-1 . ?templateMotifSequenceProfileAlignmentOperationP2631187 edam:has_input signature:MF_00550 ; rdf:type edam:operation_0300 . ?targetMotifMatch88 faldo:location ?targetMotifMatchRegionMatch89 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0055091 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP26311MF_0055082 . ?targetMotifMatchRegionMatch89 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0055090 . ?targetMotifMatchRegionMatchBeginMF_0055090 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0055083 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_0055091 edam:has_input signature:MF_00550 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP26311MF_0055080, 1, (STRLEN(?templateMotifCigarP26311MF_0055080) - STRLEN(REPLACE(?templateMotifCigarP26311MF_0055080, CONCAT('^(?:-*[^-]){', STR(((173 - ?templateMotifSequenceMatchBeginPositionP2631181) + 1)), '}'), '')))), '[a-z]', '')) AS ?step192) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP26311MF_0055082, 1, (STRLEN(?targetMotifMatchCigarP26311MF_0055082) - STRLEN(REPLACE(?targetMotifMatchCigarP26311MF_0055082, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step192), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP26311MF_0055082, 1, (STRLEN(?targetMotifMatchCigarP26311MF_0055082) - STRLEN(REPLACE(?targetMotifMatchCigarP26311MF_0055082, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step192), '}'), '')))), '[^-]', ''))) AS ?step293) . BIND(((?step293 + ?targetMotifMatchRegionMatchBeginPositionMF_0055083) - 1) AS ?thisPositionOn21) . BIND(?thisPositionOn21 AS ?thisPositionOn22) . BIND(?this AS ?pfs1t94) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn21))) AS ?pfsb19) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn22))) AS ?pfse20) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn21, 1) = 'E')) . BIND(URI(CONCAT(STR(?this), '#MF_00550a18')) AS ?annotation18) . BIND(?this AS ?pfs17) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch99 faldo:location ?templateMotifSequenceMatchRegionP26311100 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP26311102 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP26311MF_0055095 . ?templateMotifSequenceMatchRegionP26311100 faldo:begin ?templateMotifSequenceMatchBeginP26311101 . ?templateMotifSequenceMatchBeginP26311101 faldo:position ?templateMotifSequenceMatchBeginPositionP2631196 ; faldo:reference isoform:P26311-1 . ?templateMotifSequenceProfileAlignmentOperationP26311102 edam:has_input signature:MF_00550 ; rdf:type edam:operation_0300 . ?targetMotifMatch103 faldo:location ?targetMotifMatchRegionMatch104 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00550106 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP26311MF_0055097 . ?targetMotifMatchRegionMatch104 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00550105 . ?targetMotifMatchRegionMatchBeginMF_00550105 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0055098 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_00550106 edam:has_input signature:MF_00550 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP26311MF_0055095, 1, (STRLEN(?templateMotifCigarP26311MF_0055095) - STRLEN(REPLACE(?templateMotifCigarP26311MF_0055095, CONCAT('^(?:-*[^-]){', STR(((78 - ?templateMotifSequenceMatchBeginPositionP2631196) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1107) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP26311MF_0055097, 1, (STRLEN(?targetMotifMatchCigarP26311MF_0055097) - STRLEN(REPLACE(?targetMotifMatchCigarP26311MF_0055097, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1107), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP26311MF_0055097, 1, (STRLEN(?targetMotifMatchCigarP26311MF_0055097) - STRLEN(REPLACE(?targetMotifMatchCigarP26311MF_0055097, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1107), '}'), '')))), '[^-]', ''))) AS ?step2108) . BIND(((?step2108 + ?targetMotifMatchRegionMatchBeginPositionMF_0055098) - 1) AS ?thisPositionOn28) . BIND(?thisPositionOn28 AS ?thisPositionOn29) . BIND(?this AS ?pfs1t109) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn28))) AS ?pfsb25) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn29))) AS ?pfse26) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn28, 1) = 'H')) . BIND(URI(CONCAT(STR(?this), '#MF_00550a24')) AS ?annotation24) . BIND(?this AS ?pfs23) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch114 faldo:location ?templateMotifSequenceMatchRegionP26311115 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP26311117 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP26311MF_00550110 . ?templateMotifSequenceMatchRegionP26311115 faldo:begin ?templateMotifSequenceMatchBeginP26311116 . ?templateMotifSequenceMatchBeginP26311116 faldo:position ?templateMotifSequenceMatchBeginPositionP26311111 ; faldo:reference isoform:P26311-1 . ?templateMotifSequenceProfileAlignmentOperationP26311117 edam:has_input signature:MF_00550 ; rdf:type edam:operation_0300 . ?targetMotifMatch118 faldo:location ?targetMotifMatchRegionMatch119 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00550121 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP26311MF_00550112 . ?targetMotifMatchRegionMatch119 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00550120 . ?targetMotifMatchRegionMatchBeginMF_00550120 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00550113 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_00550121 edam:has_input signature:MF_00550 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP26311MF_00550110, 1, (STRLEN(?templateMotifCigarP26311MF_00550110) - STRLEN(REPLACE(?templateMotifCigarP26311MF_00550110, CONCAT('^(?:-*[^-]){', STR(((140 - ?templateMotifSequenceMatchBeginPositionP26311111) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1122) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP26311MF_00550112, 1, (STRLEN(?targetMotifMatchCigarP26311MF_00550112) - STRLEN(REPLACE(?targetMotifMatchCigarP26311MF_00550112, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1122), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP26311MF_00550112, 1, (STRLEN(?targetMotifMatchCigarP26311MF_00550112) - STRLEN(REPLACE(?targetMotifMatchCigarP26311MF_00550112, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1122), '}'), '')))), '[^-]', ''))) AS ?step2123) . BIND(((?step2123 + ?targetMotifMatchRegionMatchBeginPositionMF_00550113) - 1) AS ?thisPositionOn35) . BIND(?thisPositionOn35 AS ?thisPositionOn36) . BIND(?this AS ?pfs1t124) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn35))) AS ?pfsb32) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn36))) AS ?pfse33) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn35, 1) = 'D')) . BIND(URI(CONCAT(STR(?this), '#MF_00550a31')) AS ?annotation31) . BIND(?this AS ?pfs30) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch129 faldo:location ?templateMotifSequenceMatchRegionP26311130 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP26311132 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP26311MF_00550125 . ?templateMotifSequenceMatchRegionP26311130 faldo:begin ?templateMotifSequenceMatchBeginP26311131 . ?templateMotifSequenceMatchBeginP26311131 faldo:position ?templateMotifSequenceMatchBeginPositionP26311126 ; faldo:reference isoform:P26311-1 . ?templateMotifSequenceProfileAlignmentOperationP26311132 edam:has_input signature:MF_00550 ; rdf:type edam:operation_0300 . ?targetMotifMatch133 faldo:location ?targetMotifMatchRegionMatch134 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00550136 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP26311MF_00550127 . ?targetMotifMatchRegionMatch134 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00550135 . ?targetMotifMatchRegionMatchBeginMF_00550135 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00550128 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_00550136 edam:has_input signature:MF_00550 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP26311MF_00550125, 1, (STRLEN(?templateMotifCigarP26311MF_00550125) - STRLEN(REPLACE(?templateMotifCigarP26311MF_00550125, CONCAT('^(?:-*[^-]){', STR(((140 - ?templateMotifSequenceMatchBeginPositionP26311126) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1137) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP26311MF_00550127, 1, (STRLEN(?targetMotifMatchCigarP26311MF_00550127) - STRLEN(REPLACE(?targetMotifMatchCigarP26311MF_00550127, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1137), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP26311MF_00550127, 1, (STRLEN(?targetMotifMatchCigarP26311MF_00550127) - STRLEN(REPLACE(?targetMotifMatchCigarP26311MF_00550127, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1137), '}'), '')))), '[^-]', ''))) AS ?step2138) . BIND(((?step2138 + ?targetMotifMatchRegionMatchBeginPositionMF_00550128) - 1) AS ?thisPositionOn42) . BIND(?thisPositionOn42 AS ?thisPositionOn43) . BIND(?this AS ?pfs1t139) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn42))) AS ?pfsb39) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn43))) AS ?pfse40) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn42, 1) = 'D')) . BIND(URI(CONCAT(STR(?this), '#MF_00550a38')) AS ?annotation38) . BIND(?this AS ?pfs37) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch144 faldo:location ?templateMotifSequenceMatchRegionP26311145 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP26311147 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP26311MF_00550140 . ?templateMotifSequenceMatchRegionP26311145 faldo:begin ?templateMotifSequenceMatchBeginP26311146 . ?templateMotifSequenceMatchBeginP26311146 faldo:position ?templateMotifSequenceMatchBeginPositionP26311141 ; faldo:reference isoform:P26311-1 . ?templateMotifSequenceProfileAlignmentOperationP26311147 edam:has_input signature:MF_00550 ; rdf:type edam:operation_0300 . ?targetMotifMatch148 faldo:location ?targetMotifMatchRegionMatch149 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00550151 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP26311MF_00550142 . ?targetMotifMatchRegionMatch149 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00550150 . ?targetMotifMatchRegionMatchBeginMF_00550150 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00550143 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_00550151 edam:has_input signature:MF_00550 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP26311MF_00550140, 1, (STRLEN(?templateMotifCigarP26311MF_00550140) - STRLEN(REPLACE(?templateMotifCigarP26311MF_00550140, CONCAT('^(?:-*[^-]){', STR(((174 - ?templateMotifSequenceMatchBeginPositionP26311141) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1152) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP26311MF_00550142, 1, (STRLEN(?targetMotifMatchCigarP26311MF_00550142) - STRLEN(REPLACE(?targetMotifMatchCigarP26311MF_00550142, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1152), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP26311MF_00550142, 1, (STRLEN(?targetMotifMatchCigarP26311MF_00550142) - STRLEN(REPLACE(?targetMotifMatchCigarP26311MF_00550142, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1152), '}'), '')))), '[^-]', ''))) AS ?step2153) . BIND(((?step2153 + ?targetMotifMatchRegionMatchBeginPositionMF_00550143) - 1) AS ?thisPositionOn49) . BIND(?thisPositionOn49 AS ?thisPositionOn50) . BIND(?this AS ?pfs1t154) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn49))) AS ?pfsb46) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn50))) AS ?pfse47) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn49, 1) = 'E')) . BIND(URI(CONCAT(STR(?this), '#MF_00550a45')) AS ?annotation45) . BIND(?this AS ?pfs44) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch159 faldo:location ?templateMotifSequenceMatchRegionP26311160 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP26311162 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP26311MF_00550155 . ?templateMotifSequenceMatchRegionP26311160 faldo:begin ?templateMotifSequenceMatchBeginP26311161 . ?templateMotifSequenceMatchBeginP26311161 faldo:position ?templateMotifSequenceMatchBeginPositionP26311156 ; faldo:reference isoform:P26311-1 . ?templateMotifSequenceProfileAlignmentOperationP26311162 edam:has_input signature:MF_00550 ; rdf:type edam:operation_0300 . ?targetMotifMatch163 faldo:location ?targetMotifMatchRegionMatch164 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00550166 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP26311MF_00550157 . ?targetMotifMatchRegionMatch164 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00550165 . ?targetMotifMatchRegionMatchBeginMF_00550165 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00550158 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_00550166 edam:has_input signature:MF_00550 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP26311MF_00550155, 1, (STRLEN(?templateMotifCigarP26311MF_00550155) - STRLEN(REPLACE(?templateMotifCigarP26311MF_00550155, CONCAT('^(?:-*[^-]){', STR(((196 - ?templateMotifSequenceMatchBeginPositionP26311156) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1167) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP26311MF_00550157, 1, (STRLEN(?targetMotifMatchCigarP26311MF_00550157) - STRLEN(REPLACE(?targetMotifMatchCigarP26311MF_00550157, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1167), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP26311MF_00550157, 1, (STRLEN(?targetMotifMatchCigarP26311MF_00550157) - STRLEN(REPLACE(?targetMotifMatchCigarP26311MF_00550157, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1167), '}'), '')))), '[^-]', ''))) AS ?step2168) . BIND(((?step2168 + ?targetMotifMatchRegionMatchBeginPositionMF_00550158) - 1) AS ?thisPositionOn56) . BIND(?thisPositionOn56 AS ?thisPositionOn57) . BIND(?this AS ?pfs1t169) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn56))) AS ?pfsb53) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn57))) AS ?pfse54) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn56, 1) = 'D')) . BIND(URI(CONCAT(STR(?this), '#MF_00550a52')) AS ?annotation52) . BIND(?this AS ?pfs51) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch174 faldo:location ?templateMotifSequenceMatchRegionP26311175 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP26311177 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP26311MF_00550170 . ?templateMotifSequenceMatchRegionP26311175 faldo:begin ?templateMotifSequenceMatchBeginP26311176 . ?templateMotifSequenceMatchBeginP26311176 faldo:position ?templateMotifSequenceMatchBeginPositionP26311171 ; faldo:reference isoform:P26311-1 . ?templateMotifSequenceProfileAlignmentOperationP26311177 edam:has_input signature:MF_00550 ; rdf:type edam:operation_0300 . ?targetMotifMatch178 faldo:location ?targetMotifMatchRegionMatch179 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00550181 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP26311MF_00550172 . ?targetMotifMatchRegionMatch179 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00550180 . ?targetMotifMatchRegionMatchBeginMF_00550180 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00550173 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_00550181 edam:has_input signature:MF_00550 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP26311MF_00550170, 1, (STRLEN(?templateMotifCigarP26311MF_00550170) - STRLEN(REPLACE(?templateMotifCigarP26311MF_00550170, CONCAT('^(?:-*[^-]){', STR(((379 - ?templateMotifSequenceMatchBeginPositionP26311171) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1182) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP26311MF_00550172, 1, (STRLEN(?targetMotifMatchCigarP26311MF_00550172) - STRLEN(REPLACE(?targetMotifMatchCigarP26311MF_00550172, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1182), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP26311MF_00550172, 1, (STRLEN(?targetMotifMatchCigarP26311MF_00550172) - STRLEN(REPLACE(?targetMotifMatchCigarP26311MF_00550172, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1182), '}'), '')))), '[^-]', ''))) AS ?step2183) . BIND(((?step2183 + ?targetMotifMatchRegionMatchBeginPositionMF_00550173) - 1) AS ?thisPositionOn63) . BIND(?thisPositionOn63 AS ?thisPositionOn64) . BIND(?this AS ?pfs1t184) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn63))) AS ?pfsb60) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn64))) AS ?pfse61) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn63, 1) = 'H')) . BIND(URI(CONCAT(STR(?this), '#MF_00550a59')) AS ?annotation59) . BIND(?this AS ?pfs58) . } }