CONSTRUCT { _:218949 up:source unirule:MF_00567 . _:218950 up:source unirule:MF_00567 . _:218951 up:source unirule:MF_00567 . _:218952 up:source unirule:MF_00567 . _:218953 up:source unirule:MF_00567 . _:218954 up:source unirule:MF_00567 . _:218955 up:source unirule:MF_00567 . _:218956 up:source unirule:MF_00567 . _:218957 up:source unirule:MF_00567 . _:218958 up:source unirule:MF_00567 . _:218959 up:source unirule:MF_00567 . _:218960 up:source unirule:MF_00567 . _:218961 up:source unirule:MF_00567 . _:218962 up:source unirule:MF_00567 . _:218963 up:source unirule:MF_00567 . _:218964 up:source unirule:MF_00567 . _:218965 up:source unirule:MF_00567 . _:218966 up:source unirule:MF_00567 . _:218967 up:source unirule:MF_00567 . _:218968 up:source unirule:MF_00567 . _:218969 up:source unirule:MF_00567 . _:218970 up:source unirule:MF_00567 . _:218971 up:source unirule:MF_00567 . _:218972 up:source unirule:MF_00567 . _:218973 up:source unirule:MF_00567 . _:218974 up:source unirule:MF_00567 . _:218975 up:source unirule:MF_00567 . ?this up:annotation ?annotation2 , ?annotation3 , ?annotation5 , ?annotation6 , ?annotation7 , ?annotation9 ; up:classifiedWith GO:0005737 , GO:0008987 , GO:0009435 , keyword:408 , keyword:411 , keyword:479 , keyword:4 , keyword:662 , keyword:808 , keyword:963 ; up:recommendedName ?name0 . ?name0 up:ecName '2.5.1.72' ; up:fullName 'Quinolinate synthase' ; rdf:type up:Structured_Name . ?gene1 skos:prefLabel 'nadA' . ?annotation2 a up:Function_Annotation ; rdfs:comment 'Catalyzes the condensation of iminoaspartate with dihydroxyacetone phosphate to form quinolinate.' . ?annotation3 up:activity ?activity4 ; rdf:type up:Catalytic_Activity_Annotation . ?activity4 up:catalyticActivity <http://rdf.rhea-db.org/25888>; up:enzymeClass <http://purl.uniprot.org/enzyme/2.5.1.72>. ?annotation5 up:cofactor chebi:49883 ; rdf:type up:Cofactor_Annotation ; rdfs:comment 'Binds 1 [4Fe-4S] cluster per subunit.' . ?annotation6 a up:Pathway_Annotation ; rdfs:comment 'Cofactor biosynthesis; NAD(+) biosynthesis; quinolinate from iminoaspartate: step 1/1.' . ?annotation7 a up:Subcellular_Location_Annotation . ?annotation7li8 up:cellularComponent <http://purl.uniprot.org/locations/null>. ?annotation9 a up:Similarity_Annotation ; rdfs:comment 'Belongs to the quinolinate synthase family. Type 1 subfamily.' . ?pfs10 up:annotation ?annotation11 . ?annotation11 faldo:begin ?pfsb12 ; faldo:end ?pfse13 ; up:ligand ?ligand14 ; rdf:type up:Binding_Site_Annotation . ?pfsb12 faldo:position ?thisPositionOn15 ; rdf:type faldo:ExactPosition . ?pfse13 faldo:position ?thisPositionOn16 ; rdf:type faldo:ExactPosition . ?ligand14 rdfs:subClassOf chebi:77875 . ?pfs17 up:annotation ?annotation18 . ?annotation18 faldo:begin ?pfsb19 ; faldo:end ?pfse20 ; up:ligand ?ligand21 ; rdf:type up:Binding_Site_Annotation . ?pfsb19 faldo:position ?thisPositionOn22 ; rdf:type faldo:ExactPosition . ?pfse20 faldo:position ?thisPositionOn23 ; rdf:type faldo:ExactPosition . ?ligand21 rdfs:subClassOf chebi:77875 . ?pfs24 up:annotation ?annotation25 . ?annotation25 faldo:begin ?pfsb26 ; faldo:end ?pfse27 ; up:ligand ?ligand28 ; rdf:type up:Binding_Site_Annotation . ?pfsb26 faldo:position ?thisPositionOn29 ; rdf:type faldo:ExactPosition . ?pfse27 faldo:position ?thisPositionOn30 ; rdf:type faldo:ExactPosition . ?ligand28 rdfs:subClassOf chebi:49883 . ?pfs31 up:annotation ?annotation32 . ?annotation32 faldo:begin ?pfsb33 ; faldo:end ?pfse34 ; up:ligand ?ligand35 ; rdf:type up:Binding_Site_Annotation . ?pfsb33 faldo:position ?thisPositionOn36 ; rdf:type faldo:ExactPosition . ?pfse34 faldo:position ?thisPositionOn37 ; rdf:type faldo:ExactPosition . ?ligand35 rdfs:subClassOf chebi:49883 . ?pfs38 up:annotation ?annotation39 . ?annotation39 faldo:begin ?pfsb40 ; faldo:end ?pfse41 ; up:ligand ?ligand42 ; rdf:type up:Binding_Site_Annotation . ?pfsb40 faldo:position ?thisPositionOn43 ; rdf:type faldo:ExactPosition . ?pfse41 faldo:position ?thisPositionOn44 ; rdf:type faldo:ExactPosition . ?ligand42 rdfs:subClassOf chebi:49883 . ?pfs45 up:annotation ?annotation46 . ?annotation46 faldo:begin ?pfsb47 ; faldo:end ?pfse48 ; up:ligand ?ligand49 ; rdf:type up:Binding_Site_Annotation . ?pfsb47 faldo:position ?thisPositionOn50 ; rdf:type faldo:ExactPosition . ?pfse48 faldo:position ?thisPositionOn51 ; rdf:type faldo:ExactPosition . ?ligand49 rdfs:subClassOf chebi:77875 . ?pfs52 up:annotation ?annotation53 . ?annotation53 faldo:begin ?pfsb54 ; faldo:end ?pfse55 ; up:ligand ?ligand56 ; rdf:type up:Binding_Site_Annotation . ?pfsb54 faldo:position ?thisPositionOn57 ; rdf:type faldo:ExactPosition . ?pfse55 faldo:position ?thisPositionOn58 ; rdf:type faldo:ExactPosition . ?ligand56 rdfs:subClassOf chebi:77875 . ?pfs59 up:annotation ?annotation60 . ?annotation60 faldo:begin ?pfsb61 ; faldo:end ?pfse62 ; up:ligand ?ligand63 ; rdf:type up:Binding_Site_Annotation . ?pfsb61 faldo:position ?thisPositionOn64 ; rdf:type faldo:ExactPosition . ?pfse62 faldo:position ?thisPositionOn65 ; rdf:type faldo:ExactPosition . ?ligand63 rdfs:subClassOf chebi:77875 . ?pfs66 up:annotation ?annotation67 . ?annotation67 faldo:begin ?pfsb68 ; faldo:end ?pfse69 ; up:ligand ?ligand70 ; rdf:type up:Binding_Site_Annotation . ?pfsb68 faldo:position ?thisPositionOn71 ; rdf:type faldo:ExactPosition . ?pfse69 faldo:position ?thisPositionOn72 ; rdf:type faldo:ExactPosition . ?ligand70 rdfs:subClassOf chebi:77875 . _:218976 a rdf:Statement ; up:attribution _:218949 ; rdf:subject ?this ; rdf:predicate up:recommendedName ; rdf:object ?name0 . _:218977 a rdf:Statement ; up:attribution _:218950 ; rdf:subject ?gene1 ; rdf:predicate up:encodedBy ; rdf:object ?gene1 . _:218978 a rdf:Statement ; up:attribution _:218951 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation2 . _:218979 a rdf:Statement ; up:attribution _:218952 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation3 . _:218980 a rdf:Statement ; up:attribution _:218953 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation5 . _:218981 a rdf:Statement ; up:attribution _:218954 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation6 . _:218982 a rdf:Statement ; up:attribution _:218955 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation7 . _:218983 a rdf:Statement ; up:attribution _:218956 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation9 . _:218984 a rdf:Statement ; up:attribution _:218957 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:4 . _:218985 a rdf:Statement ; up:attribution _:218958 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:963 . _:218986 a rdf:Statement ; up:attribution _:218959 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:408 . _:218987 a rdf:Statement ; up:attribution _:218960 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:411 . _:218988 a rdf:Statement ; up:attribution _:218961 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:479 . _:218989 a rdf:Statement ; up:attribution _:218962 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:662 . _:218990 a rdf:Statement ; up:attribution _:218963 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:808 . _:218991 a rdf:Statement ; up:attribution _:218964 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object GO:0008987 . _:218992 a rdf:Statement ; up:attribution _:218965 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object GO:0009435 . _:218993 a rdf:Statement ; up:attribution _:218966 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object GO:0005737 . _:218994 a rdf:Statement ; up:source unirule:MF_00567 ; rdf:subject ?pfs10 ; rdf:predicate up:annotation ; rdf:object ?annotation11 . _:218995 a rdf:Statement ; up:attribution _:218967 ; rdf:subject ?pfs10 ; rdf:predicate up:annotation ; rdf:object ?annotation11 . _:218996 a rdf:Statement ; up:source unirule:MF_00567 ; rdf:subject ?pfs17 ; rdf:predicate up:annotation ; rdf:object ?annotation18 . _:218997 a rdf:Statement ; up:attribution _:218968 ; rdf:subject ?pfs17 ; rdf:predicate up:annotation ; rdf:object ?annotation18 . _:218998 a rdf:Statement ; up:source unirule:MF_00567 ; rdf:subject ?pfs24 ; rdf:predicate up:annotation ; rdf:object ?annotation25 . _:218999 a rdf:Statement ; up:attribution _:218969 ; rdf:subject ?pfs24 ; rdf:predicate up:annotation ; rdf:object ?annotation25 . _:219000 a rdf:Statement ; up:source unirule:MF_00567 ; rdf:subject ?pfs31 ; rdf:predicate up:annotation ; rdf:object ?annotation32 . _:219001 a rdf:Statement ; up:attribution _:218970 ; rdf:subject ?pfs31 ; rdf:predicate up:annotation ; rdf:object ?annotation32 . _:219002 a rdf:Statement ; up:source unirule:MF_00567 ; rdf:subject ?pfs38 ; rdf:predicate up:annotation ; rdf:object ?annotation39 . _:219003 a rdf:Statement ; up:attribution _:218971 ; rdf:subject ?pfs38 ; rdf:predicate up:annotation ; rdf:object ?annotation39 . _:219004 a rdf:Statement ; up:source unirule:MF_00567 ; rdf:subject ?pfs45 ; rdf:predicate up:annotation ; rdf:object ?annotation46 . _:219005 a rdf:Statement ; up:attribution _:218972 ; rdf:subject ?pfs45 ; rdf:predicate up:annotation ; rdf:object ?annotation46 . _:219006 a rdf:Statement ; up:source unirule:MF_00567 ; rdf:subject ?pfs52 ; rdf:predicate up:annotation ; rdf:object ?annotation53 . _:219007 a rdf:Statement ; up:attribution _:218973 ; rdf:subject ?pfs52 ; rdf:predicate up:annotation ; rdf:object ?annotation53 . _:219008 a rdf:Statement ; up:source unirule:MF_00567 ; rdf:subject ?pfs59 ; rdf:predicate up:annotation ; rdf:object ?annotation60 . _:219009 a rdf:Statement ; up:attribution _:218974 ; rdf:subject ?pfs59 ; rdf:predicate up:annotation ; rdf:object ?annotation60 . _:219010 a rdf:Statement ; up:source unirule:MF_00567 ; rdf:subject ?pfs66 ; rdf:predicate up:annotation ; rdf:object ?annotation67 . _:219011 a rdf:Statement ; up:attribution _:218975 ; rdf:subject ?pfs66 ; rdf:predicate up:annotation ; rdf:object ?annotation67 . } WHERE { #baseURI: http://purl.uniprot.org/unirule/MF_00567 #Rule MF_00567 Created by:bairoch on:2002-07-02 Modified by:ecastro on:2023-06-01 ?this up:organism ?thisOrganism ; rdfs:seeAlso signature:MF_00567 . ?thisOrganism rdfs:subClassOf+ taxon:2 . BIND(URI(CONCAT(STR(?this), '#MF_00567a0')) AS ?name0) . BIND(URI(CONCAT(STR(?this), '#MF_00567a2')) AS ?annotation2) . BIND(URI(CONCAT(STR(?this), '#MF_00567a3')) AS ?annotation3) . BIND(URI(CONCAT(STR(?this), '#MF_00567a5')) AS ?annotation5) . BIND(URI(CONCAT(STR(?this), '#MF_00567a6')) AS ?annotation6) . BIND(URI(CONCAT(STR(?this), '#MF_00567a7')) AS ?annotation7) . BIND(URI(CONCAT(STR(?this), '#MF_00567a9')) AS ?annotation9) . OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch77 faldo:location ?templateMotifSequenceMatchRegionP1145878 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP1145880 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP11458MF_0056773 . ?templateMotifSequenceMatchRegionP1145878 faldo:begin ?templateMotifSequenceMatchBeginP1145879 . ?templateMotifSequenceMatchBeginP1145879 faldo:position ?templateMotifSequenceMatchBeginPositionP1145874 ; faldo:reference isoform:P11458-1 . ?templateMotifSequenceProfileAlignmentOperationP1145880 edam:has_input signature:MF_00567 ; rdf:type edam:operation_0300 . ?targetMotifMatch81 faldo:location ?targetMotifMatchRegionMatch82 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0056784 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP11458MF_0056775 . ?targetMotifMatchRegionMatch82 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0056783 . ?targetMotifMatchRegionMatchBeginMF_0056783 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0056776 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_0056784 edam:has_input signature:MF_00567 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP11458MF_0056773, 1, (STRLEN(?templateMotifCigarP11458MF_0056773) - STRLEN(REPLACE(?templateMotifCigarP11458MF_0056773, CONCAT('^(?:-*[^-]){', STR(((139 - ?templateMotifSequenceMatchBeginPositionP1145874) + 1)), '}'), '')))), '[a-z]', '')) AS ?step185) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP11458MF_0056775, 1, (STRLEN(?targetMotifMatchCigarP11458MF_0056775) - STRLEN(REPLACE(?targetMotifMatchCigarP11458MF_0056775, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step185), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP11458MF_0056775, 1, (STRLEN(?targetMotifMatchCigarP11458MF_0056775) - STRLEN(REPLACE(?targetMotifMatchCigarP11458MF_0056775, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step185), '}'), '')))), '[^-]', ''))) AS ?step286) . BIND(((?step286 + ?targetMotifMatchRegionMatchBeginPositionMF_0056776) - 1) AS ?thisPositionOn15) . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP11458MF_0056773, 1, (STRLEN(?templateMotifCigarP11458MF_0056773) - STRLEN(REPLACE(?templateMotifCigarP11458MF_0056773, CONCAT('^(?:-*[^-]){', STR(((141 - ?templateMotifSequenceMatchBeginPositionP1145874) + 1)), '}'), '')))), '[a-z]', '')) AS ?step187) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP11458MF_0056775, 1, (STRLEN(?targetMotifMatchCigarP11458MF_0056775) - STRLEN(REPLACE(?targetMotifMatchCigarP11458MF_0056775, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step187), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP11458MF_0056775, 1, (STRLEN(?targetMotifMatchCigarP11458MF_0056775) - STRLEN(REPLACE(?targetMotifMatchCigarP11458MF_0056775, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step187), '}'), '')))), '[^-]', ''))) AS ?step288) . BIND(((?step288 + ?targetMotifMatchRegionMatchBeginPositionMF_0056776) - 1) AS ?thisPositionOn16) . BIND(?this AS ?pfs1t89) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn15))) AS ?pfsb12) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn16))) AS ?pfse13) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn15, (?thisPositionOn16 - ?thisPositionOn15)) = 'YAN')) . BIND(URI(CONCAT(STR(?this), '#MF_00567a11')) AS ?annotation11) . BIND(?this AS ?pfs10) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch94 faldo:location ?templateMotifSequenceMatchRegionP1145895 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP1145897 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP11458MF_0056790 . ?templateMotifSequenceMatchRegionP1145895 faldo:begin ?templateMotifSequenceMatchBeginP1145896 . ?templateMotifSequenceMatchBeginP1145896 faldo:position ?templateMotifSequenceMatchBeginPositionP1145891 ; faldo:reference isoform:P11458-1 . ?templateMotifSequenceProfileAlignmentOperationP1145897 edam:has_input signature:MF_00567 ; rdf:type edam:operation_0300 . ?targetMotifMatch98 faldo:location ?targetMotifMatchRegionMatch99 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00567101 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP11458MF_0056792 . ?targetMotifMatchRegionMatch99 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00567100 . ?targetMotifMatchRegionMatchBeginMF_00567100 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0056793 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_00567101 edam:has_input signature:MF_00567 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP11458MF_0056790, 1, (STRLEN(?templateMotifCigarP11458MF_0056790) - STRLEN(REPLACE(?templateMotifCigarP11458MF_0056790, CONCAT('^(?:-*[^-]){', STR(((226 - ?templateMotifSequenceMatchBeginPositionP1145891) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1102) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP11458MF_0056792, 1, (STRLEN(?targetMotifMatchCigarP11458MF_0056792) - STRLEN(REPLACE(?targetMotifMatchCigarP11458MF_0056792, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1102), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP11458MF_0056792, 1, (STRLEN(?targetMotifMatchCigarP11458MF_0056792) - STRLEN(REPLACE(?targetMotifMatchCigarP11458MF_0056792, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1102), '}'), '')))), '[^-]', ''))) AS ?step2103) . BIND(((?step2103 + ?targetMotifMatchRegionMatchBeginPositionMF_0056793) - 1) AS ?thisPositionOn22) . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP11458MF_0056790, 1, (STRLEN(?templateMotifCigarP11458MF_0056790) - STRLEN(REPLACE(?templateMotifCigarP11458MF_0056790, CONCAT('^(?:-*[^-]){', STR(((228 - ?templateMotifSequenceMatchBeginPositionP1145891) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1104) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP11458MF_0056792, 1, (STRLEN(?targetMotifMatchCigarP11458MF_0056792) - STRLEN(REPLACE(?targetMotifMatchCigarP11458MF_0056792, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1104), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP11458MF_0056792, 1, (STRLEN(?targetMotifMatchCigarP11458MF_0056792) - STRLEN(REPLACE(?targetMotifMatchCigarP11458MF_0056792, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1104), '}'), '')))), '[^-]', ''))) AS ?step2105) . BIND(((?step2105 + ?targetMotifMatchRegionMatchBeginPositionMF_0056793) - 1) AS ?thisPositionOn23) . BIND(?this AS ?pfs1t106) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn22))) AS ?pfsb19) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn23))) AS ?pfse20) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn22, (?thisPositionOn23 - ?thisPositionOn22)) = 'HPE')) . BIND(URI(CONCAT(STR(?this), '#MF_00567a18')) AS ?annotation18) . BIND(?this AS ?pfs17) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch111 faldo:location ?templateMotifSequenceMatchRegionP11458112 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP11458114 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP11458MF_00567107 . ?templateMotifSequenceMatchRegionP11458112 faldo:begin ?templateMotifSequenceMatchBeginP11458113 . ?templateMotifSequenceMatchBeginP11458113 faldo:position ?templateMotifSequenceMatchBeginPositionP11458108 ; faldo:reference isoform:P11458-1 . ?templateMotifSequenceProfileAlignmentOperationP11458114 edam:has_input signature:MF_00567 ; rdf:type edam:operation_0300 . ?targetMotifMatch115 faldo:location ?targetMotifMatchRegionMatch116 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00567118 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP11458MF_00567109 . ?targetMotifMatchRegionMatch116 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00567117 . ?targetMotifMatchRegionMatchBeginMF_00567117 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00567110 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_00567118 edam:has_input signature:MF_00567 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP11458MF_00567107, 1, (STRLEN(?templateMotifCigarP11458MF_00567107) - STRLEN(REPLACE(?templateMotifCigarP11458MF_00567107, CONCAT('^(?:-*[^-]){', STR(((113 - ?templateMotifSequenceMatchBeginPositionP11458108) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1119) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP11458MF_00567109, 1, (STRLEN(?targetMotifMatchCigarP11458MF_00567109) - STRLEN(REPLACE(?targetMotifMatchCigarP11458MF_00567109, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1119), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP11458MF_00567109, 1, (STRLEN(?targetMotifMatchCigarP11458MF_00567109) - STRLEN(REPLACE(?targetMotifMatchCigarP11458MF_00567109, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1119), '}'), '')))), '[^-]', ''))) AS ?step2120) . BIND(((?step2120 + ?targetMotifMatchRegionMatchBeginPositionMF_00567110) - 1) AS ?thisPositionOn29) . BIND(?thisPositionOn29 AS ?thisPositionOn30) . BIND(?this AS ?pfs1t121) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn29))) AS ?pfsb26) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn30))) AS ?pfse27) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn29, 1) = 'C')) . BIND(URI(CONCAT(STR(?this), '#MF_00567a25')) AS ?annotation25) . BIND(?this AS ?pfs24) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch126 faldo:location ?templateMotifSequenceMatchRegionP11458127 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP11458129 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP11458MF_00567122 . ?templateMotifSequenceMatchRegionP11458127 faldo:begin ?templateMotifSequenceMatchBeginP11458128 . ?templateMotifSequenceMatchBeginP11458128 faldo:position ?templateMotifSequenceMatchBeginPositionP11458123 ; faldo:reference isoform:P11458-1 . ?templateMotifSequenceProfileAlignmentOperationP11458129 edam:has_input signature:MF_00567 ; rdf:type edam:operation_0300 . ?targetMotifMatch130 faldo:location ?targetMotifMatchRegionMatch131 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00567133 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP11458MF_00567124 . ?targetMotifMatchRegionMatch131 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00567132 . ?targetMotifMatchRegionMatchBeginMF_00567132 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00567125 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_00567133 edam:has_input signature:MF_00567 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP11458MF_00567122, 1, (STRLEN(?templateMotifCigarP11458MF_00567122) - STRLEN(REPLACE(?templateMotifCigarP11458MF_00567122, CONCAT('^(?:-*[^-]){', STR(((200 - ?templateMotifSequenceMatchBeginPositionP11458123) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1134) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP11458MF_00567124, 1, (STRLEN(?targetMotifMatchCigarP11458MF_00567124) - STRLEN(REPLACE(?targetMotifMatchCigarP11458MF_00567124, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1134), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP11458MF_00567124, 1, (STRLEN(?targetMotifMatchCigarP11458MF_00567124) - STRLEN(REPLACE(?targetMotifMatchCigarP11458MF_00567124, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1134), '}'), '')))), '[^-]', ''))) AS ?step2135) . BIND(((?step2135 + ?targetMotifMatchRegionMatchBeginPositionMF_00567125) - 1) AS ?thisPositionOn36) . BIND(?thisPositionOn36 AS ?thisPositionOn37) . BIND(?this AS ?pfs1t136) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn36))) AS ?pfsb33) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn37))) AS ?pfse34) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn36, 1) = 'C')) . BIND(URI(CONCAT(STR(?this), '#MF_00567a32')) AS ?annotation32) . BIND(?this AS ?pfs31) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch141 faldo:location ?templateMotifSequenceMatchRegionP11458142 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP11458144 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP11458MF_00567137 . ?templateMotifSequenceMatchRegionP11458142 faldo:begin ?templateMotifSequenceMatchBeginP11458143 . ?templateMotifSequenceMatchBeginP11458143 faldo:position ?templateMotifSequenceMatchBeginPositionP11458138 ; faldo:reference isoform:P11458-1 . ?templateMotifSequenceProfileAlignmentOperationP11458144 edam:has_input signature:MF_00567 ; rdf:type edam:operation_0300 . ?targetMotifMatch145 faldo:location ?targetMotifMatchRegionMatch146 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00567148 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP11458MF_00567139 . ?targetMotifMatchRegionMatch146 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00567147 . ?targetMotifMatchRegionMatchBeginMF_00567147 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00567140 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_00567148 edam:has_input signature:MF_00567 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP11458MF_00567137, 1, (STRLEN(?templateMotifCigarP11458MF_00567137) - STRLEN(REPLACE(?templateMotifCigarP11458MF_00567137, CONCAT('^(?:-*[^-]){', STR(((297 - ?templateMotifSequenceMatchBeginPositionP11458138) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1149) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP11458MF_00567139, 1, (STRLEN(?targetMotifMatchCigarP11458MF_00567139) - STRLEN(REPLACE(?targetMotifMatchCigarP11458MF_00567139, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1149), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP11458MF_00567139, 1, (STRLEN(?targetMotifMatchCigarP11458MF_00567139) - STRLEN(REPLACE(?targetMotifMatchCigarP11458MF_00567139, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1149), '}'), '')))), '[^-]', ''))) AS ?step2150) . BIND(((?step2150 + ?targetMotifMatchRegionMatchBeginPositionMF_00567140) - 1) AS ?thisPositionOn43) . BIND(?thisPositionOn43 AS ?thisPositionOn44) . BIND(?this AS ?pfs1t151) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn43))) AS ?pfsb40) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn44))) AS ?pfse41) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn43, 1) = 'C')) . BIND(URI(CONCAT(STR(?this), '#MF_00567a39')) AS ?annotation39) . BIND(?this AS ?pfs38) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch156 faldo:location ?templateMotifSequenceMatchRegionP11458157 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP11458159 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP11458MF_00567152 . ?templateMotifSequenceMatchRegionP11458157 faldo:begin ?templateMotifSequenceMatchBeginP11458158 . ?templateMotifSequenceMatchBeginP11458158 faldo:position ?templateMotifSequenceMatchBeginPositionP11458153 ; faldo:reference isoform:P11458-1 . ?templateMotifSequenceProfileAlignmentOperationP11458159 edam:has_input signature:MF_00567 ; rdf:type edam:operation_0300 . ?targetMotifMatch160 faldo:location ?targetMotifMatchRegionMatch161 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00567163 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP11458MF_00567154 . ?targetMotifMatchRegionMatch161 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00567162 . ?targetMotifMatchRegionMatchBeginMF_00567162 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00567155 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_00567163 edam:has_input signature:MF_00567 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP11458MF_00567152, 1, (STRLEN(?templateMotifCigarP11458MF_00567152) - STRLEN(REPLACE(?templateMotifCigarP11458MF_00567152, CONCAT('^(?:-*[^-]){', STR(((47 - ?templateMotifSequenceMatchBeginPositionP11458153) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1164) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP11458MF_00567154, 1, (STRLEN(?targetMotifMatchCigarP11458MF_00567154) - STRLEN(REPLACE(?targetMotifMatchCigarP11458MF_00567154, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1164), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP11458MF_00567154, 1, (STRLEN(?targetMotifMatchCigarP11458MF_00567154) - STRLEN(REPLACE(?targetMotifMatchCigarP11458MF_00567154, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1164), '}'), '')))), '[^-]', ''))) AS ?step2165) . BIND(((?step2165 + ?targetMotifMatchRegionMatchBeginPositionMF_00567155) - 1) AS ?thisPositionOn50) . BIND(?thisPositionOn50 AS ?thisPositionOn51) . BIND(?this AS ?pfs1t166) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn50))) AS ?pfsb47) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn51))) AS ?pfse48) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn50, 1) = 'H')) . BIND(URI(CONCAT(STR(?this), '#MF_00567a46')) AS ?annotation46) . BIND(?this AS ?pfs45) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch171 faldo:location ?templateMotifSequenceMatchRegionP11458172 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP11458174 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP11458MF_00567167 . ?templateMotifSequenceMatchRegionP11458172 faldo:begin ?templateMotifSequenceMatchBeginP11458173 . ?templateMotifSequenceMatchBeginP11458173 faldo:position ?templateMotifSequenceMatchBeginPositionP11458168 ; faldo:reference isoform:P11458-1 . ?templateMotifSequenceProfileAlignmentOperationP11458174 edam:has_input signature:MF_00567 ; rdf:type edam:operation_0300 . ?targetMotifMatch175 faldo:location ?targetMotifMatchRegionMatch176 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00567178 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP11458MF_00567169 . ?targetMotifMatchRegionMatch176 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00567177 . ?targetMotifMatchRegionMatchBeginMF_00567177 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00567170 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_00567178 edam:has_input signature:MF_00567 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP11458MF_00567167, 1, (STRLEN(?templateMotifCigarP11458MF_00567167) - STRLEN(REPLACE(?templateMotifCigarP11458MF_00567167, CONCAT('^(?:-*[^-]){', STR(((68 - ?templateMotifSequenceMatchBeginPositionP11458168) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1179) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP11458MF_00567169, 1, (STRLEN(?targetMotifMatchCigarP11458MF_00567169) - STRLEN(REPLACE(?targetMotifMatchCigarP11458MF_00567169, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1179), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP11458MF_00567169, 1, (STRLEN(?targetMotifMatchCigarP11458MF_00567169) - STRLEN(REPLACE(?targetMotifMatchCigarP11458MF_00567169, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1179), '}'), '')))), '[^-]', ''))) AS ?step2180) . BIND(((?step2180 + ?targetMotifMatchRegionMatchBeginPositionMF_00567170) - 1) AS ?thisPositionOn57) . BIND(?thisPositionOn57 AS ?thisPositionOn58) . BIND(?this AS ?pfs1t181) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn57))) AS ?pfsb54) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn58))) AS ?pfse55) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn57, 1) = 'S')) . BIND(URI(CONCAT(STR(?this), '#MF_00567a53')) AS ?annotation53) . BIND(?this AS ?pfs52) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch186 faldo:location ?templateMotifSequenceMatchRegionP11458187 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP11458189 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP11458MF_00567182 . ?templateMotifSequenceMatchRegionP11458187 faldo:begin ?templateMotifSequenceMatchBeginP11458188 . ?templateMotifSequenceMatchBeginP11458188 faldo:position ?templateMotifSequenceMatchBeginPositionP11458183 ; faldo:reference isoform:P11458-1 . ?templateMotifSequenceProfileAlignmentOperationP11458189 edam:has_input signature:MF_00567 ; rdf:type edam:operation_0300 . ?targetMotifMatch190 faldo:location ?targetMotifMatchRegionMatch191 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00567193 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP11458MF_00567184 . ?targetMotifMatchRegionMatch191 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00567192 . ?targetMotifMatchRegionMatchBeginMF_00567192 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00567185 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_00567193 edam:has_input signature:MF_00567 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP11458MF_00567182, 1, (STRLEN(?templateMotifCigarP11458MF_00567182) - STRLEN(REPLACE(?templateMotifCigarP11458MF_00567182, CONCAT('^(?:-*[^-]){', STR(((156 - ?templateMotifSequenceMatchBeginPositionP11458183) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1194) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP11458MF_00567184, 1, (STRLEN(?targetMotifMatchCigarP11458MF_00567184) - STRLEN(REPLACE(?targetMotifMatchCigarP11458MF_00567184, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1194), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP11458MF_00567184, 1, (STRLEN(?targetMotifMatchCigarP11458MF_00567184) - STRLEN(REPLACE(?targetMotifMatchCigarP11458MF_00567184, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1194), '}'), '')))), '[^-]', ''))) AS ?step2195) . BIND(((?step2195 + ?targetMotifMatchRegionMatchBeginPositionMF_00567185) - 1) AS ?thisPositionOn64) . BIND(?thisPositionOn64 AS ?thisPositionOn65) . BIND(?this AS ?pfs1t196) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn64))) AS ?pfsb61) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn65))) AS ?pfse62) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn64, 1) = 'S')) . BIND(URI(CONCAT(STR(?this), '#MF_00567a60')) AS ?annotation60) . BIND(?this AS ?pfs59) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch201 faldo:location ?templateMotifSequenceMatchRegionP11458202 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP11458204 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP11458MF_00567197 . ?templateMotifSequenceMatchRegionP11458202 faldo:begin ?templateMotifSequenceMatchBeginP11458203 . ?templateMotifSequenceMatchBeginP11458203 faldo:position ?templateMotifSequenceMatchBeginPositionP11458198 ; faldo:reference isoform:P11458-1 . ?templateMotifSequenceProfileAlignmentOperationP11458204 edam:has_input signature:MF_00567 ; rdf:type edam:operation_0300 . ?targetMotifMatch205 faldo:location ?targetMotifMatchRegionMatch206 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00567208 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP11458MF_00567199 . ?targetMotifMatchRegionMatch206 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00567207 . ?targetMotifMatchRegionMatchBeginMF_00567207 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00567200 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_00567208 edam:has_input signature:MF_00567 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP11458MF_00567197, 1, (STRLEN(?templateMotifCigarP11458MF_00567197) - STRLEN(REPLACE(?templateMotifCigarP11458MF_00567197, CONCAT('^(?:-*[^-]){', STR(((243 - ?templateMotifSequenceMatchBeginPositionP11458198) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1209) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP11458MF_00567199, 1, (STRLEN(?targetMotifMatchCigarP11458MF_00567199) - STRLEN(REPLACE(?targetMotifMatchCigarP11458MF_00567199, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1209), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP11458MF_00567199, 1, (STRLEN(?targetMotifMatchCigarP11458MF_00567199) - STRLEN(REPLACE(?targetMotifMatchCigarP11458MF_00567199, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1209), '}'), '')))), '[^-]', ''))) AS ?step2210) . BIND(((?step2210 + ?targetMotifMatchRegionMatchBeginPositionMF_00567200) - 1) AS ?thisPositionOn71) . BIND(?thisPositionOn71 AS ?thisPositionOn72) . BIND(?this AS ?pfs1t211) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn71))) AS ?pfsb68) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn72))) AS ?pfse69) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn71, 1) = 'T')) . BIND(URI(CONCAT(STR(?this), '#MF_00567a67')) AS ?annotation67) . BIND(?this AS ?pfs66) . } }