CONSTRUCT { _:225121 up:source unirule:MF_00583 . _:225122 up:source unirule:MF_00583 . _:225123 up:source unirule:MF_00583 . _:225124 up:source unirule:MF_00583 . _:225125 up:source unirule:MF_00583 . _:225126 up:source unirule:MF_00583 . _:225127 up:source unirule:MF_00583 . _:225128 up:source unirule:MF_00583 . _:225129 up:source unirule:MF_00583 . _:225130 up:source unirule:MF_00583 . _:225131 up:source unirule:MF_00583 . _:225132 up:source unirule:MF_00583 . _:225133 up:source unirule:MF_00583 . _:225134 up:source unirule:MF_00583 . _:225135 up:source unirule:MF_00583 . _:225136 up:source unirule:MF_00583 . _:225137 up:source unirule:MF_00583 . _:225138 up:source unirule:MF_00583 . _:225139 up:source unirule:MF_00583 . _:225140 up:source unirule:MF_00583 . _:225141 up:source unirule:MF_00583 . _:225142 up:source unirule:MF_00583 . _:225143 up:source unirule:MF_00583 . _:225144 up:source unirule:MF_00583 . _:225145 up:source unirule:MF_00583 . _:225146 up:source unirule:MF_00583 . _:225147 up:source unirule:MF_00583 . _:225148 up:source unirule:MF_00583 . _:225149 up:source unirule:MF_00583 . _:225150 up:source unirule:MF_00583 . _:225151 up:source unirule:MF_00583 . _:225152 up:source unirule:MF_00583 . _:225153 up:source unirule:MF_00583 . _:225154 up:source unirule:MF_00583 . _:225155 up:source unirule:MF_00583 . _:225156 up:source unirule:MF_00583 . _:225157 up:source unirule:MF_00583 . _:225158 up:source unirule:MF_00583 . ?this up:alternativeName ?name0 , ?name1 , ?name2 ; up:annotation ?annotation4 , ?annotation5 , ?annotation7 , ?annotation8 ; up:classifiedWith GO:0000287 , GO:0004749 , GO:0005737 , GO:0006015 , keyword:418 , keyword:460 , keyword:479 , keyword:545 , keyword:547 , keyword:67 , keyword:808 , keyword:963 . ?name0 up:fullName '5-phospho-D-ribosyl alpha-1-diphosphate synthase' ; rdf:type up:Structured_Name . ?name1 up:fullName 'Phosphoribosyl diphosphate synthase' ; rdf:type up:Structured_Name . ?name2 up:fullName 'Phosphoribosyl pyrophosphate synthase' ; up:shortName 'P-Rib-PP synthase' , 'PRPP synthase' , 'PRPPase' ; rdf:type up:Structured_Name . ?gene3 skos:prefLabel 'prs' . ?annotation4 a up:Function_Annotation ; rdfs:comment 'Involved in the biosynthesis of the central metabolite phospho-alpha-D-ribosyl-1-pyrophosphate (PRPP) via the transfer of pyrophosphoryl group from ATP to 1-hydroxyl of ribose-5-phosphate (Rib-5-P).' . ?annotation5 up:activity ?activity6 ; rdf:type up:Catalytic_Activity_Annotation . ?activity6 up:catalyticActivity <http://rdf.rhea-db.org/15609>; up:enzymeClass <http://purl.uniprot.org/enzyme/2.7.6.1>. ?annotation7 a up:Pathway_Annotation ; rdfs:comment 'Metabolic intermediate biosynthesis; 5-phospho-alpha-D-ribose 1-diphosphate biosynthesis; 5-phospho-alpha-D-ribose 1-diphosphate from D-ribose 5-phosphate (route I): step 1/1.' . ?annotation8 a up:Subcellular_Location_Annotation . ?annotation8li9 up:cellularComponent <http://purl.uniprot.org/locations/null>. ?case13 up:recommendedName ?name14 . ?name14 up:ecName '2.7.6.1' ; up:fullName 'Ribose-phosphate pyrophosphokinase' ; up:shortName 'RPPK' ; rdf:type up:Structured_Name . ?case15 up:recommendedName ?name16 . ?name16 up:ecName '2.7.6.1' ; up:fullName 'Putative ribose-phosphate pyrophosphokinase' ; up:shortName 'RPPK' ; rdf:type up:Structured_Name . ?pfs19 up:annotation ?annotation20 . ?annotation20 faldo:begin ?pfsb21 ; faldo:end ?pfse22 ; up:ligand ?ligand23 ; rdf:type up:Binding_Site_Annotation . ?pfsb21 faldo:position ?thisPositionOn24 ; rdf:type faldo:ExactPosition . ?pfse22 faldo:position ?thisPositionOn25 ; rdf:type faldo:ExactPosition . ?ligand23 rdfs:subClassOf chebi:18420 . ?pfs26 up:annotation ?annotation27 . ?annotation27 faldo:begin ?pfsb28 ; faldo:end ?pfse29 ; rdf:type up:Active_Site_Annotation . ?pfsb28 faldo:position ?thisPositionOn30 ; rdf:type faldo:ExactPosition . ?pfse29 faldo:position ?thisPositionOn31 ; rdf:type faldo:ExactPosition . ?pfs32 up:annotation ?annotation33 . ?annotation33 faldo:begin ?pfsb34 ; faldo:end ?pfse35 ; up:ligand ?ligand36 ; rdf:type up:Binding_Site_Annotation . ?pfsb34 faldo:position ?thisPositionOn37 ; rdf:type faldo:ExactPosition . ?pfse35 faldo:position ?thisPositionOn38 ; rdf:type faldo:ExactPosition . ?ligand36 rdfs:subClassOf chebi:30616 . ?pfs39 up:annotation ?annotation40 . ?annotation40 faldo:begin ?pfsb41 ; faldo:end ?pfse42 ; up:ligand ?ligand43 ; rdf:type up:Binding_Site_Annotation . ?pfsb41 faldo:position ?thisPositionOn44 ; rdf:type faldo:ExactPosition . ?pfse42 faldo:position ?thisPositionOn45 ; rdf:type faldo:ExactPosition . ?ligand43 rdfs:subClassOf chebi:30616 . ?pfs46 up:annotation ?annotation47 . ?annotation47 faldo:begin ?pfsb48 ; faldo:end ?pfse49 ; up:ligand ?ligand50 ; rdf:type up:Binding_Site_Annotation . ?pfsb48 faldo:position ?thisPositionOn51 ; rdf:type faldo:ExactPosition . ?pfse49 faldo:position ?thisPositionOn52 ; rdf:type faldo:ExactPosition . ?ligand50 rdfs:subClassOf chebi:78346 . ?pfs53 up:annotation ?annotation54 . ?annotation54 faldo:begin ?pfsb55 ; faldo:end ?pfse56 ; rdf:type up:Active_Site_Annotation . ?pfsb55 faldo:position ?thisPositionOn57 ; rdf:type faldo:ExactPosition . ?pfse56 faldo:position ?thisPositionOn58 ; rdf:type faldo:ExactPosition . ?pfs59 up:annotation ?annotation60 . ?annotation60 faldo:begin ?pfsb61 ; faldo:end ?pfse62 ; up:ligand ?ligand63 ; rdf:type up:Binding_Site_Annotation . ?pfsb61 faldo:position ?thisPositionOn64 ; rdf:type faldo:ExactPosition . ?pfse62 faldo:position ?thisPositionOn65 ; rdf:type faldo:ExactPosition . ?ligand63 rdfs:subClassOf chebi:18420 . ?pfs66 up:annotation ?annotation67 . ?annotation67 faldo:begin ?pfsb68 ; faldo:end ?pfse69 ; up:ligand ?ligand70 ; rdf:type up:Binding_Site_Annotation . ?pfsb68 faldo:position ?thisPositionOn71 ; rdf:type faldo:ExactPosition . ?pfse69 faldo:position ?thisPositionOn72 ; rdf:type faldo:ExactPosition . ?ligand70 rdfs:subClassOf chebi:18420 . ?pfs73 up:annotation ?annotation74 . ?annotation74 faldo:begin ?pfsb75 ; faldo:end ?pfse76 ; up:ligand ?ligand77 ; rdf:type up:Binding_Site_Annotation . ?pfsb75 faldo:position ?thisPositionOn78 ; rdf:type faldo:ExactPosition . ?pfse76 faldo:position ?thisPositionOn79 ; rdf:type faldo:ExactPosition . ?ligand77 rdfs:subClassOf chebi:78346 . ?pfs80 up:annotation ?annotation81 . ?annotation81 faldo:begin ?pfsb82 ; faldo:end ?pfse83 ; up:ligand ?ligand84 ; rdf:type up:Binding_Site_Annotation . ?pfsb82 faldo:position ?thisPositionOn85 ; rdf:type faldo:ExactPosition . ?pfse83 faldo:position ?thisPositionOn86 ; rdf:type faldo:ExactPosition . ?ligand84 rdfs:subClassOf chebi:78346 . ?pfs87 up:annotation ?annotation88 . ?annotation88 faldo:begin ?pfsb89 ; faldo:end ?pfse90 ; up:ligand ?ligand91 ; rdf:type up:Binding_Site_Annotation . ?pfsb89 faldo:position ?thisPositionOn92 ; rdf:type faldo:ExactPosition . ?pfse90 faldo:position ?thisPositionOn93 ; rdf:type faldo:ExactPosition . ?ligand91 rdfs:subClassOf chebi:30616 . ?pfs94 up:annotation ?annotation95 . ?annotation95 faldo:begin ?pfsb96 ; faldo:end ?pfse97 ; up:ligand ?ligand98 ; rdf:type up:Binding_Site_Annotation . ?pfsb96 faldo:position ?thisPositionOn99 ; rdf:type faldo:ExactPosition . ?pfse97 faldo:position ?thisPositionOn100 ; rdf:type faldo:ExactPosition . ?ligand98 rdfs:subClassOf chebi:30616 . ?pfs101 up:annotation ?annotation102 . ?annotation102 faldo:begin ?pfsb103 ; faldo:end ?pfse104 ; up:ligand ?ligand105 ; rdf:type up:Binding_Site_Annotation . ?pfsb103 faldo:position ?thisPositionOn106 ; rdf:type faldo:ExactPosition . ?pfse104 faldo:position ?thisPositionOn107 ; rdf:type faldo:ExactPosition . ?ligand105 rdfs:subClassOf chebi:78346 . ?pfs108 up:annotation ?annotation109 . ?annotation109 faldo:begin ?pfsb110 ; faldo:end ?pfse111 ; up:ligand ?ligand112 ; rdf:type up:Binding_Site_Annotation . ?pfsb110 faldo:position ?thisPositionOn113 ; rdf:type faldo:ExactPosition . ?pfse111 faldo:position ?thisPositionOn114 ; rdf:type faldo:ExactPosition . ?ligand112 rdfs:subClassOf chebi:18420 . ?pfs115 up:annotation ?annotation116 . ?annotation116 faldo:begin ?pfsb117 ; faldo:end ?pfse118 ; up:ligand ?ligand119 ; rdf:type up:Binding_Site_Annotation . ?pfsb117 faldo:position ?thisPositionOn120 ; rdf:type faldo:ExactPosition . ?pfse118 faldo:position ?thisPositionOn121 ; rdf:type faldo:ExactPosition . ?ligand119 rdfs:subClassOf chebi:78346 . ?pfs122 up:annotation ?annotation123 . ?annotation123 faldo:begin ?pfsb124 ; faldo:end ?pfse125 ; up:ligand ?ligand126 ; rdf:type up:Binding_Site_Annotation . ?pfsb124 faldo:position ?thisPositionOn127 ; rdf:type faldo:ExactPosition . ?pfse125 faldo:position ?thisPositionOn128 ; rdf:type faldo:ExactPosition . ?ligand126 rdfs:subClassOf chebi:78346 . _:225159 a rdf:Statement ; up:attribution _:225121 ; rdf:subject ?this ; rdf:predicate up:alternativeName ; rdf:object ?name0 . _:225160 a rdf:Statement ; up:attribution _:225122 ; rdf:subject ?this ; rdf:predicate up:alternativeName ; rdf:object ?name1 . _:225161 a rdf:Statement ; up:attribution _:225123 ; rdf:subject ?this ; rdf:predicate up:alternativeName ; rdf:object ?name2 . _:225162 a rdf:Statement ; up:attribution _:225124 ; rdf:subject ?gene3 ; rdf:predicate up:encodedBy ; rdf:object ?gene3 . _:225163 a rdf:Statement ; up:attribution _:225125 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation4 . _:225164 a rdf:Statement ; up:attribution _:225126 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation5 . _:225165 a rdf:Statement ; up:attribution _:225127 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation7 . _:225166 a rdf:Statement ; up:attribution _:225128 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation8 . _:225167 a rdf:Statement ; up:attribution _:225129 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:67 . _:225168 a rdf:Statement ; up:attribution _:225130 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:963 . _:225169 a rdf:Statement ; up:attribution _:225131 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:418 . _:225170 a rdf:Statement ; up:attribution _:225132 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:460 . _:225171 a rdf:Statement ; up:attribution _:225133 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:479 . _:225172 a rdf:Statement ; up:attribution _:225134 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:547 . _:225173 a rdf:Statement ; up:attribution _:225135 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:545 . _:225174 a rdf:Statement ; up:attribution _:225136 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:808 . _:225175 a rdf:Statement ; up:attribution _:225137 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object GO:0000287 . _:225176 a rdf:Statement ; up:attribution _:225138 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object GO:0004749 . _:225177 a rdf:Statement ; up:attribution _:225139 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object GO:0006015 . _:225178 a rdf:Statement ; up:attribution _:225140 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object GO:0005737 . _:225179 a rdf:Statement ; up:attribution _:225141 ; rdf:subject ?case13 ; rdf:predicate up:recommendedName ; rdf:object ?name14 . _:225180 a rdf:Statement ; up:attribution _:225142 ; rdf:subject ?case15 ; rdf:predicate up:recommendedName ; rdf:object ?name16 . _:225181 a rdf:Statement ; up:source unirule:MF_00583 ; rdf:subject ?pfs19 ; rdf:predicate up:annotation ; rdf:object ?annotation20 . _:225182 a rdf:Statement ; up:attribution _:225143 ; rdf:subject ?pfs19 ; rdf:predicate up:annotation ; rdf:object ?annotation20 . _:225183 a rdf:Statement ; up:source unirule:MF_00583 ; rdf:subject ?pfs26 ; rdf:predicate up:annotation ; rdf:object ?annotation27 . _:225184 a rdf:Statement ; up:attribution _:225144 ; rdf:subject ?pfs26 ; rdf:predicate up:annotation ; rdf:object ?annotation27 . _:225185 a rdf:Statement ; up:source unirule:MF_00583 ; rdf:subject ?pfs32 ; rdf:predicate up:annotation ; rdf:object ?annotation33 . _:225186 a rdf:Statement ; up:attribution _:225145 ; rdf:subject ?pfs32 ; rdf:predicate up:annotation ; rdf:object ?annotation33 . _:225187 a rdf:Statement ; up:source unirule:MF_00583 ; rdf:subject ?pfs39 ; rdf:predicate up:annotation ; rdf:object ?annotation40 . _:225188 a rdf:Statement ; up:attribution _:225146 ; rdf:subject ?pfs39 ; rdf:predicate up:annotation ; rdf:object ?annotation40 . _:225189 a rdf:Statement ; up:source unirule:MF_00583 ; rdf:subject ?pfs46 ; rdf:predicate up:annotation ; rdf:object ?annotation47 . _:225190 a rdf:Statement ; up:attribution _:225147 ; rdf:subject ?pfs46 ; rdf:predicate up:annotation ; rdf:object ?annotation47 . _:225191 a rdf:Statement ; up:source unirule:MF_00583 ; rdf:subject ?pfs53 ; rdf:predicate up:annotation ; rdf:object ?annotation54 . _:225192 a rdf:Statement ; up:attribution _:225148 ; rdf:subject ?pfs53 ; rdf:predicate up:annotation ; rdf:object ?annotation54 . _:225193 a rdf:Statement ; up:source unirule:MF_00583 ; rdf:subject ?pfs59 ; rdf:predicate up:annotation ; rdf:object ?annotation60 . _:225194 a rdf:Statement ; up:attribution _:225149 ; rdf:subject ?pfs59 ; rdf:predicate up:annotation ; rdf:object ?annotation60 . _:225195 a rdf:Statement ; up:source unirule:MF_00583 ; rdf:subject ?pfs66 ; rdf:predicate up:annotation ; rdf:object ?annotation67 . _:225196 a rdf:Statement ; up:attribution _:225150 ; rdf:subject ?pfs66 ; rdf:predicate up:annotation ; rdf:object ?annotation67 . _:225197 a rdf:Statement ; up:source unirule:MF_00583 ; rdf:subject ?pfs73 ; rdf:predicate up:annotation ; rdf:object ?annotation74 . _:225198 a rdf:Statement ; up:attribution _:225151 ; rdf:subject ?pfs73 ; rdf:predicate up:annotation ; rdf:object ?annotation74 . _:225199 a rdf:Statement ; up:source unirule:MF_00583 ; rdf:subject ?pfs80 ; rdf:predicate up:annotation ; rdf:object ?annotation81 . _:225200 a rdf:Statement ; up:attribution _:225152 ; rdf:subject ?pfs80 ; rdf:predicate up:annotation ; rdf:object ?annotation81 . _:225201 a rdf:Statement ; up:source unirule:MF_00583 ; rdf:subject ?pfs87 ; rdf:predicate up:annotation ; rdf:object ?annotation88 . _:225202 a rdf:Statement ; up:attribution _:225153 ; rdf:subject ?pfs87 ; rdf:predicate up:annotation ; rdf:object ?annotation88 . _:225203 a rdf:Statement ; up:source unirule:MF_00583 ; rdf:subject ?pfs94 ; rdf:predicate up:annotation ; rdf:object ?annotation95 . _:225204 a rdf:Statement ; up:attribution _:225154 ; rdf:subject ?pfs94 ; rdf:predicate up:annotation ; rdf:object ?annotation95 . _:225205 a rdf:Statement ; up:source unirule:MF_00583 ; rdf:subject ?pfs101 ; rdf:predicate up:annotation ; rdf:object ?annotation102 . _:225206 a rdf:Statement ; up:attribution _:225155 ; rdf:subject ?pfs101 ; rdf:predicate up:annotation ; rdf:object ?annotation102 . _:225207 a rdf:Statement ; up:source unirule:MF_00583 ; rdf:subject ?pfs108 ; rdf:predicate up:annotation ; rdf:object ?annotation109 . _:225208 a rdf:Statement ; up:attribution _:225156 ; rdf:subject ?pfs108 ; rdf:predicate up:annotation ; rdf:object ?annotation109 . _:225209 a rdf:Statement ; up:source unirule:MF_00583 ; rdf:subject ?pfs115 ; rdf:predicate up:annotation ; rdf:object ?annotation116 . _:225210 a rdf:Statement ; up:attribution _:225157 ; rdf:subject ?pfs115 ; rdf:predicate up:annotation ; rdf:object ?annotation116 . _:225211 a rdf:Statement ; up:source unirule:MF_00583 ; rdf:subject ?pfs122 ; rdf:predicate up:annotation ; rdf:object ?annotation123 . _:225212 a rdf:Statement ; up:attribution _:225158 ; rdf:subject ?pfs122 ; rdf:predicate up:annotation ; rdf:object ?annotation123 . } WHERE { #baseURI: http://purl.uniprot.org/unirule/MF_00583 #Rule MF_00583 Created by:bairoch on:2002-10-19 Modified by:crivoire on:2024-01-19 { ?this up:organism ?thisOrganism ; rdfs:seeAlso signature:MF_00583_B . ?thisOrganism rdfs:subClassOf+ taxon:2 . } UNION { ?this up:organism ?thisOrganism ; rdfs:seeAlso signature:MF_00583_A . ?thisOrganism rdfs:subClassOf+ taxon:2157 . } BIND(URI(CONCAT(STR(?this), '#MF_00583a0')) AS ?name0) . BIND(URI(CONCAT(STR(?this), '#MF_00583a1')) AS ?name1) . BIND(URI(CONCAT(STR(?this), '#MF_00583a2')) AS ?name2) . BIND(URI(CONCAT(STR(?this), '#MF_00583a4')) AS ?annotation4) . BIND(URI(CONCAT(STR(?this), '#MF_00583a5')) AS ?annotation5) . BIND(URI(CONCAT(STR(?this), '#MF_00583a7')) AS ?annotation7) . BIND(URI(CONCAT(STR(?this), '#MF_00583a8')) AS ?annotation8) . OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch133 faldo:location ?templateMotifSequenceMatchRegionP14193134 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP14193136 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP14193MF_00583_B129 . ?templateMotifSequenceMatchRegionP14193134 faldo:begin ?templateMotifSequenceMatchBeginP14193135 . ?templateMotifSequenceMatchBeginP14193135 faldo:position ?templateMotifSequenceMatchBeginPositionP14193130 ; faldo:reference isoform:P14193-1 . ?templateMotifSequenceProfileAlignmentOperationP14193136 edam:has_input signature:MF_00583_B ; rdf:type edam:operation_0300 . ?targetMotifMatch137 faldo:location ?targetMotifMatchRegionMatch138 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00583_B140 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP14193MF_00583_B131 . ?targetMotifMatchRegionMatch138 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00583_B139 . ?targetMotifMatchRegionMatchBeginMF_00583_B139 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00583_B132 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_00583_B140 edam:has_input signature:MF_00583_B ; rdf:type edam:operation_0300 . BIND(?this AS ?tagMetal) . ?this up:organism ?thisOrganism . ?thisOrganism rdfs:subClassOf+ taxon:2 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP14193MF_00583_B129, 1, (STRLEN(?templateMotifCigarP14193MF_00583_B129) - STRLEN(REPLACE(?templateMotifCigarP14193MF_00583_B129, CONCAT('^(?:-*[^-]){', STR(((175 - ?templateMotifSequenceMatchBeginPositionP14193130) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1141) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP14193MF_00583_B131, 1, (STRLEN(?targetMotifMatchCigarP14193MF_00583_B131) - STRLEN(REPLACE(?targetMotifMatchCigarP14193MF_00583_B131, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1141), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP14193MF_00583_B131, 1, (STRLEN(?targetMotifMatchCigarP14193MF_00583_B131) - STRLEN(REPLACE(?targetMotifMatchCigarP14193MF_00583_B131, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1141), '}'), '')))), '[^-]', ''))) AS ?step2142) . BIND(((?step2142 + ?targetMotifMatchRegionMatchBeginPositionMF_00583_B132) - 1) AS ?thisPositionOn24) . BIND(?thisPositionOn24 AS ?thisPositionOn25) . BIND(?this AS ?pfs1t143) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn24))) AS ?pfsb21) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn25))) AS ?pfse22) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn24, 1) = 'D')) . BIND(URI(CONCAT(STR(?this), '#MF_00583a20')) AS ?annotation20) . BIND(?this AS ?pfs19) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch148 faldo:location ?templateMotifSequenceMatchRegionP14193149 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP14193151 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP14193MF_00583_B144 . ?templateMotifSequenceMatchRegionP14193149 faldo:begin ?templateMotifSequenceMatchBeginP14193150 . ?templateMotifSequenceMatchBeginP14193150 faldo:position ?templateMotifSequenceMatchBeginPositionP14193145 ; faldo:reference isoform:P14193-1 . ?templateMotifSequenceProfileAlignmentOperationP14193151 edam:has_input signature:MF_00583_B ; rdf:type edam:operation_0300 . ?targetMotifMatch152 faldo:location ?targetMotifMatchRegionMatch153 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00583_B155 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP14193MF_00583_B146 . ?targetMotifMatchRegionMatch153 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00583_B154 . ?targetMotifMatchRegionMatchBeginMF_00583_B154 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00583_B147 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_00583_B155 edam:has_input signature:MF_00583_B ; rdf:type edam:operation_0300 . BIND(?this AS ?tagDiv) . ?this up:organism ?thisOrganism . ?thisOrganism rdfs:subClassOf+ taxon:2 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP14193MF_00583_B144, 1, (STRLEN(?templateMotifCigarP14193MF_00583_B144) - STRLEN(REPLACE(?templateMotifCigarP14193MF_00583_B144, CONCAT('^(?:-*[^-]){', STR(((198 - ?templateMotifSequenceMatchBeginPositionP14193145) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1156) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP14193MF_00583_B146, 1, (STRLEN(?targetMotifMatchCigarP14193MF_00583_B146) - STRLEN(REPLACE(?targetMotifMatchCigarP14193MF_00583_B146, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1156), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP14193MF_00583_B146, 1, (STRLEN(?targetMotifMatchCigarP14193MF_00583_B146) - STRLEN(REPLACE(?targetMotifMatchCigarP14193MF_00583_B146, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1156), '}'), '')))), '[^-]', ''))) AS ?step2157) . BIND(((?step2157 + ?targetMotifMatchRegionMatchBeginPositionMF_00583_B147) - 1) AS ?thisPositionOn30) . BIND(?thisPositionOn30 AS ?thisPositionOn31) . BIND(?this AS ?pfs2t158) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn30))) AS ?pfsb28) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn31))) AS ?pfse29) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn30, 1) = 'K')) . BIND(URI(CONCAT(STR(?this), '#MF_00583a27')) AS ?annotation27) . BIND(?this AS ?pfs26) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch163 faldo:location ?templateMotifSequenceMatchRegionQ97CA5164 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ97CA5166 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarQ97CA5MF_00583_A159 . ?templateMotifSequenceMatchRegionQ97CA5164 faldo:begin ?templateMotifSequenceMatchBeginQ97CA5165 . ?templateMotifSequenceMatchBeginQ97CA5165 faldo:position ?templateMotifSequenceMatchBeginPositionQ97CA5160 ; faldo:reference isoform:Q97CA5-1 . ?templateMotifSequenceProfileAlignmentOperationQ97CA5166 edam:has_input signature:MF_00583_A ; rdf:type edam:operation_0300 . ?targetMotifMatch167 faldo:location ?targetMotifMatchRegionMatch168 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00583_A170 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarQ97CA5MF_00583_A161 . ?targetMotifMatchRegionMatch168 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00583_A169 . ?targetMotifMatchRegionMatchBeginMF_00583_A169 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00583_A162 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_00583_A170 edam:has_input signature:MF_00583_A ; rdf:type edam:operation_0300 . ?this up:organism ?thisOrganism . ?thisOrganism rdfs:subClassOf+ taxon:2157 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ97CA5MF_00583_A159, 1, (STRLEN(?templateMotifCigarQ97CA5MF_00583_A159) - STRLEN(REPLACE(?templateMotifCigarQ97CA5MF_00583_A159, CONCAT('^(?:-*[^-]){', STR(((34 - ?templateMotifSequenceMatchBeginPositionQ97CA5160) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1171) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ97CA5MF_00583_A161, 1, (STRLEN(?targetMotifMatchCigarQ97CA5MF_00583_A161) - STRLEN(REPLACE(?targetMotifMatchCigarQ97CA5MF_00583_A161, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1171), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ97CA5MF_00583_A161, 1, (STRLEN(?targetMotifMatchCigarQ97CA5MF_00583_A161) - STRLEN(REPLACE(?targetMotifMatchCigarQ97CA5MF_00583_A161, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1171), '}'), '')))), '[^-]', ''))) AS ?step2172) . BIND(((?step2172 + ?targetMotifMatchRegionMatchBeginPositionMF_00583_A162) - 1) AS ?thisPositionOn37) . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ97CA5MF_00583_A159, 1, (STRLEN(?templateMotifCigarQ97CA5MF_00583_A159) - STRLEN(REPLACE(?templateMotifCigarQ97CA5MF_00583_A159, CONCAT('^(?:-*[^-]){', STR(((36 - ?templateMotifSequenceMatchBeginPositionQ97CA5160) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1173) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ97CA5MF_00583_A161, 1, (STRLEN(?targetMotifMatchCigarQ97CA5MF_00583_A161) - STRLEN(REPLACE(?targetMotifMatchCigarQ97CA5MF_00583_A161, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1173), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ97CA5MF_00583_A161, 1, (STRLEN(?targetMotifMatchCigarQ97CA5MF_00583_A161) - STRLEN(REPLACE(?targetMotifMatchCigarQ97CA5MF_00583_A161, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1173), '}'), '')))), '[^-]', ''))) AS ?step2174) . BIND(((?step2174 + ?targetMotifMatchRegionMatchBeginPositionMF_00583_A162) - 1) AS ?thisPositionOn38) . BIND(?this AS ?pfs3t175) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn37))) AS ?pfsb34) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn38))) AS ?pfse35) . FILTER (REGEX('D[ARNDCQEGHILKMFPSTWYVBZJUOX]E', SUBSTR(?thisSequenceValue, ?thisPositionOn37, (?thisPositionOn38 - ?thisPositionOn37)))) . BIND(URI(CONCAT(STR(?this), '#MF_00583a33')) AS ?annotation33) . BIND(?this AS ?pfs32) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch180 faldo:location ?templateMotifSequenceMatchRegionQ97CA5181 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ97CA5183 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarQ97CA5MF_00583_A176 . ?templateMotifSequenceMatchRegionQ97CA5181 faldo:begin ?templateMotifSequenceMatchBeginQ97CA5182 . ?templateMotifSequenceMatchBeginQ97CA5182 faldo:position ?templateMotifSequenceMatchBeginPositionQ97CA5177 ; faldo:reference isoform:Q97CA5-1 . ?templateMotifSequenceProfileAlignmentOperationQ97CA5183 edam:has_input signature:MF_00583_A ; rdf:type edam:operation_0300 . ?targetMotifMatch184 faldo:location ?targetMotifMatchRegionMatch185 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00583_A187 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarQ97CA5MF_00583_A178 . ?targetMotifMatchRegionMatch185 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00583_A186 . ?targetMotifMatchRegionMatchBeginMF_00583_A186 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00583_A179 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_00583_A187 edam:has_input signature:MF_00583_A ; rdf:type edam:operation_0300 . ?this up:organism ?thisOrganism . ?thisOrganism rdfs:subClassOf+ taxon:2157 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ97CA5MF_00583_A176, 1, (STRLEN(?templateMotifCigarQ97CA5MF_00583_A176) - STRLEN(REPLACE(?templateMotifCigarQ97CA5MF_00583_A176, CONCAT('^(?:-*[^-]){', STR(((91 - ?templateMotifSequenceMatchBeginPositionQ97CA5177) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1188) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ97CA5MF_00583_A178, 1, (STRLEN(?targetMotifMatchCigarQ97CA5MF_00583_A178) - STRLEN(REPLACE(?targetMotifMatchCigarQ97CA5MF_00583_A178, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1188), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ97CA5MF_00583_A178, 1, (STRLEN(?targetMotifMatchCigarQ97CA5MF_00583_A178) - STRLEN(REPLACE(?targetMotifMatchCigarQ97CA5MF_00583_A178, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1188), '}'), '')))), '[^-]', ''))) AS ?step2189) . BIND(((?step2189 + ?targetMotifMatchRegionMatchBeginPositionMF_00583_A179) - 1) AS ?thisPositionOn44) . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ97CA5MF_00583_A176, 1, (STRLEN(?templateMotifCigarQ97CA5MF_00583_A176) - STRLEN(REPLACE(?templateMotifCigarQ97CA5MF_00583_A176, CONCAT('^(?:-*[^-]){', STR(((92 - ?templateMotifSequenceMatchBeginPositionQ97CA5177) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1190) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ97CA5MF_00583_A178, 1, (STRLEN(?targetMotifMatchCigarQ97CA5MF_00583_A178) - STRLEN(REPLACE(?targetMotifMatchCigarQ97CA5MF_00583_A178, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1190), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ97CA5MF_00583_A178, 1, (STRLEN(?targetMotifMatchCigarQ97CA5MF_00583_A178) - STRLEN(REPLACE(?targetMotifMatchCigarQ97CA5MF_00583_A178, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1190), '}'), '')))), '[^-]', ''))) AS ?step2191) . BIND(((?step2191 + ?targetMotifMatchRegionMatchBeginPositionMF_00583_A179) - 1) AS ?thisPositionOn45) . BIND(?this AS ?pfs3t192) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn44))) AS ?pfsb41) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn45))) AS ?pfse42) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn44, (?thisPositionOn45 - ?thisPositionOn44)) = 'RQ')) . BIND(URI(CONCAT(STR(?this), '#MF_00583a40')) AS ?annotation40) . BIND(?this AS ?pfs39) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch197 faldo:location ?templateMotifSequenceMatchRegionQ97CA5198 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ97CA5200 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarQ97CA5MF_00583_A193 . ?templateMotifSequenceMatchRegionQ97CA5198 faldo:begin ?templateMotifSequenceMatchBeginQ97CA5199 . ?templateMotifSequenceMatchBeginQ97CA5199 faldo:position ?templateMotifSequenceMatchBeginPositionQ97CA5194 ; faldo:reference isoform:Q97CA5-1 . ?templateMotifSequenceProfileAlignmentOperationQ97CA5200 edam:has_input signature:MF_00583_A ; rdf:type edam:operation_0300 . ?targetMotifMatch201 faldo:location ?targetMotifMatchRegionMatch202 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00583_A204 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarQ97CA5MF_00583_A195 . ?targetMotifMatchRegionMatch202 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00583_A203 . ?targetMotifMatchRegionMatchBeginMF_00583_A203 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00583_A196 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_00583_A204 edam:has_input signature:MF_00583_A ; rdf:type edam:operation_0300 . ?this up:organism ?thisOrganism . ?thisOrganism rdfs:subClassOf+ taxon:2157 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ97CA5MF_00583_A193, 1, (STRLEN(?templateMotifCigarQ97CA5MF_00583_A193) - STRLEN(REPLACE(?templateMotifCigarQ97CA5MF_00583_A193, CONCAT('^(?:-*[^-]){', STR(((214 - ?templateMotifSequenceMatchBeginPositionQ97CA5194) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1205) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ97CA5MF_00583_A195, 1, (STRLEN(?targetMotifMatchCigarQ97CA5MF_00583_A195) - STRLEN(REPLACE(?targetMotifMatchCigarQ97CA5MF_00583_A195, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1205), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ97CA5MF_00583_A195, 1, (STRLEN(?targetMotifMatchCigarQ97CA5MF_00583_A195) - STRLEN(REPLACE(?targetMotifMatchCigarQ97CA5MF_00583_A195, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1205), '}'), '')))), '[^-]', ''))) AS ?step2206) . BIND(((?step2206 + ?targetMotifMatchRegionMatchBeginPositionMF_00583_A196) - 1) AS ?thisPositionOn51) . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ97CA5MF_00583_A193, 1, (STRLEN(?templateMotifCigarQ97CA5MF_00583_A193) - STRLEN(REPLACE(?templateMotifCigarQ97CA5MF_00583_A193, CONCAT('^(?:-*[^-]){', STR(((218 - ?templateMotifSequenceMatchBeginPositionQ97CA5194) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1207) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ97CA5MF_00583_A195, 1, (STRLEN(?targetMotifMatchCigarQ97CA5MF_00583_A195) - STRLEN(REPLACE(?targetMotifMatchCigarQ97CA5MF_00583_A195, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1207), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ97CA5MF_00583_A195, 1, (STRLEN(?targetMotifMatchCigarQ97CA5MF_00583_A195) - STRLEN(REPLACE(?targetMotifMatchCigarQ97CA5MF_00583_A195, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1207), '}'), '')))), '[^-]', ''))) AS ?step2208) . BIND(((?step2208 + ?targetMotifMatchRegionMatchBeginPositionMF_00583_A196) - 1) AS ?thisPositionOn52) . BIND(?this AS ?pfs3t209) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn51))) AS ?pfsb48) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn52))) AS ?pfse49) . FILTER (REGEX('STG[ARNDCQEGHILKMFPSTWYVBZJUOX]T', SUBSTR(?thisSequenceValue, ?thisPositionOn51, (?thisPositionOn52 - ?thisPositionOn51)))) . BIND(URI(CONCAT(STR(?this), '#MF_00583a47')) AS ?annotation47) . BIND(?this AS ?pfs46) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch214 faldo:location ?templateMotifSequenceMatchRegionQ97CA5215 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ97CA5217 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarQ97CA5MF_00583_A210 . ?templateMotifSequenceMatchRegionQ97CA5215 faldo:begin ?templateMotifSequenceMatchBeginQ97CA5216 . ?templateMotifSequenceMatchBeginQ97CA5216 faldo:position ?templateMotifSequenceMatchBeginPositionQ97CA5211 ; faldo:reference isoform:Q97CA5-1 . ?templateMotifSequenceProfileAlignmentOperationQ97CA5217 edam:has_input signature:MF_00583_A ; rdf:type edam:operation_0300 . ?targetMotifMatch218 faldo:location ?targetMotifMatchRegionMatch219 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00583_A221 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarQ97CA5MF_00583_A212 . ?targetMotifMatchRegionMatch219 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00583_A220 . ?targetMotifMatchRegionMatchBeginMF_00583_A220 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00583_A213 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_00583_A221 edam:has_input signature:MF_00583_A ; rdf:type edam:operation_0300 . ?this up:organism ?thisOrganism . ?thisOrganism rdfs:subClassOf+ taxon:2157 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ97CA5MF_00583_A210, 1, (STRLEN(?templateMotifCigarQ97CA5MF_00583_A210) - STRLEN(REPLACE(?templateMotifCigarQ97CA5MF_00583_A210, CONCAT('^(?:-*[^-]){', STR(((184 - ?templateMotifSequenceMatchBeginPositionQ97CA5211) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1222) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ97CA5MF_00583_A212, 1, (STRLEN(?targetMotifMatchCigarQ97CA5MF_00583_A212) - STRLEN(REPLACE(?targetMotifMatchCigarQ97CA5MF_00583_A212, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1222), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ97CA5MF_00583_A212, 1, (STRLEN(?targetMotifMatchCigarQ97CA5MF_00583_A212) - STRLEN(REPLACE(?targetMotifMatchCigarQ97CA5MF_00583_A212, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1222), '}'), '')))), '[^-]', ''))) AS ?step2223) . BIND(((?step2223 + ?targetMotifMatchRegionMatchBeginPositionMF_00583_A213) - 1) AS ?thisPositionOn57) . BIND(?thisPositionOn57 AS ?thisPositionOn58) . BIND(?this AS ?pfs3t224) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn57))) AS ?pfsb55) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn58))) AS ?pfse56) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn57, 1) = 'K')) . BIND(URI(CONCAT(STR(?this), '#MF_00583a54')) AS ?annotation54) . BIND(?this AS ?pfs53) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch229 faldo:location ?templateMotifSequenceMatchRegionQ97CA5230 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ97CA5232 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarQ97CA5MF_00583_A225 . ?templateMotifSequenceMatchRegionQ97CA5230 faldo:begin ?templateMotifSequenceMatchBeginQ97CA5231 . ?templateMotifSequenceMatchBeginQ97CA5231 faldo:position ?templateMotifSequenceMatchBeginPositionQ97CA5226 ; faldo:reference isoform:Q97CA5-1 . ?templateMotifSequenceProfileAlignmentOperationQ97CA5232 edam:has_input signature:MF_00583_A ; rdf:type edam:operation_0300 . ?targetMotifMatch233 faldo:location ?targetMotifMatchRegionMatch234 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00583_A236 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarQ97CA5MF_00583_A227 . ?targetMotifMatchRegionMatch234 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00583_A235 . ?targetMotifMatchRegionMatchBeginMF_00583_A235 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00583_A228 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_00583_A236 edam:has_input signature:MF_00583_A ; rdf:type edam:operation_0300 . ?this up:organism ?thisOrganism . ?thisOrganism rdfs:subClassOf+ taxon:2157 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ97CA5MF_00583_A225, 1, (STRLEN(?templateMotifCigarQ97CA5MF_00583_A225) - STRLEN(REPLACE(?templateMotifCigarQ97CA5MF_00583_A225, CONCAT('^(?:-*[^-]){', STR(((124 - ?templateMotifSequenceMatchBeginPositionQ97CA5226) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1237) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ97CA5MF_00583_A227, 1, (STRLEN(?targetMotifMatchCigarQ97CA5MF_00583_A227) - STRLEN(REPLACE(?targetMotifMatchCigarQ97CA5MF_00583_A227, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1237), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ97CA5MF_00583_A227, 1, (STRLEN(?targetMotifMatchCigarQ97CA5MF_00583_A227) - STRLEN(REPLACE(?targetMotifMatchCigarQ97CA5MF_00583_A227, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1237), '}'), '')))), '[^-]', ''))) AS ?step2238) . BIND(((?step2238 + ?targetMotifMatchRegionMatchBeginPositionMF_00583_A228) - 1) AS ?thisPositionOn64) . BIND(?thisPositionOn64 AS ?thisPositionOn65) . BIND(?this AS ?pfs3t239) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn64))) AS ?pfsb61) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn65))) AS ?pfse62) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn64, 1) = 'H')) . BIND(URI(CONCAT(STR(?this), '#MF_00583a60')) AS ?annotation60) . BIND(?this AS ?pfs59) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch244 faldo:location ?templateMotifSequenceMatchRegionQ97CA5245 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ97CA5247 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarQ97CA5MF_00583_A240 . ?templateMotifSequenceMatchRegionQ97CA5245 faldo:begin ?templateMotifSequenceMatchBeginQ97CA5246 . ?templateMotifSequenceMatchBeginQ97CA5246 faldo:position ?templateMotifSequenceMatchBeginPositionQ97CA5241 ; faldo:reference isoform:Q97CA5-1 . ?templateMotifSequenceProfileAlignmentOperationQ97CA5247 edam:has_input signature:MF_00583_A ; rdf:type edam:operation_0300 . ?targetMotifMatch248 faldo:location ?targetMotifMatchRegionMatch249 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00583_A251 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarQ97CA5MF_00583_A242 . ?targetMotifMatchRegionMatch249 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00583_A250 . ?targetMotifMatchRegionMatchBeginMF_00583_A250 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00583_A243 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_00583_A251 edam:has_input signature:MF_00583_A ; rdf:type edam:operation_0300 . ?this up:organism ?thisOrganism . ?thisOrganism rdfs:subClassOf+ taxon:2157 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ97CA5MF_00583_A240, 1, (STRLEN(?templateMotifCigarQ97CA5MF_00583_A240) - STRLEN(REPLACE(?templateMotifCigarQ97CA5MF_00583_A240, CONCAT('^(?:-*[^-]){', STR(((161 - ?templateMotifSequenceMatchBeginPositionQ97CA5241) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1252) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ97CA5MF_00583_A242, 1, (STRLEN(?targetMotifMatchCigarQ97CA5MF_00583_A242) - STRLEN(REPLACE(?targetMotifMatchCigarQ97CA5MF_00583_A242, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1252), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ97CA5MF_00583_A242, 1, (STRLEN(?targetMotifMatchCigarQ97CA5MF_00583_A242) - STRLEN(REPLACE(?targetMotifMatchCigarQ97CA5MF_00583_A242, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1252), '}'), '')))), '[^-]', ''))) AS ?step2253) . BIND(((?step2253 + ?targetMotifMatchRegionMatchBeginPositionMF_00583_A243) - 1) AS ?thisPositionOn71) . BIND(?thisPositionOn71 AS ?thisPositionOn72) . BIND(?this AS ?pfs3t254) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn71))) AS ?pfsb68) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn72))) AS ?pfse69) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn71, 1) = 'D')) . BIND(URI(CONCAT(STR(?this), '#MF_00583a67')) AS ?annotation67) . BIND(?this AS ?pfs66) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch259 faldo:location ?templateMotifSequenceMatchRegionQ97CA5260 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ97CA5262 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarQ97CA5MF_00583_A255 . ?templateMotifSequenceMatchRegionQ97CA5260 faldo:begin ?templateMotifSequenceMatchBeginQ97CA5261 . ?templateMotifSequenceMatchBeginQ97CA5261 faldo:position ?templateMotifSequenceMatchBeginPositionQ97CA5256 ; faldo:reference isoform:Q97CA5-1 . ?templateMotifSequenceProfileAlignmentOperationQ97CA5262 edam:has_input signature:MF_00583_A ; rdf:type edam:operation_0300 . ?targetMotifMatch263 faldo:location ?targetMotifMatchRegionMatch264 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00583_A266 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarQ97CA5MF_00583_A257 . ?targetMotifMatchRegionMatch264 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00583_A265 . ?targetMotifMatchRegionMatchBeginMF_00583_A265 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00583_A258 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_00583_A266 edam:has_input signature:MF_00583_A ; rdf:type edam:operation_0300 . ?this up:organism ?thisOrganism . ?thisOrganism rdfs:subClassOf+ taxon:2157 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ97CA5MF_00583_A255, 1, (STRLEN(?templateMotifCigarQ97CA5MF_00583_A255) - STRLEN(REPLACE(?templateMotifCigarQ97CA5MF_00583_A255, CONCAT('^(?:-*[^-]){', STR(((186 - ?templateMotifSequenceMatchBeginPositionQ97CA5256) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1267) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ97CA5MF_00583_A257, 1, (STRLEN(?targetMotifMatchCigarQ97CA5MF_00583_A257) - STRLEN(REPLACE(?targetMotifMatchCigarQ97CA5MF_00583_A257, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1267), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ97CA5MF_00583_A257, 1, (STRLEN(?targetMotifMatchCigarQ97CA5MF_00583_A257) - STRLEN(REPLACE(?targetMotifMatchCigarQ97CA5MF_00583_A257, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1267), '}'), '')))), '[^-]', ''))) AS ?step2268) . BIND(((?step2268 + ?targetMotifMatchRegionMatchBeginPositionMF_00583_A258) - 1) AS ?thisPositionOn78) . BIND(?thisPositionOn78 AS ?thisPositionOn79) . BIND(?this AS ?pfs3t269) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn78))) AS ?pfsb75) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn79))) AS ?pfse76) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn78, 1) = 'R')) . BIND(URI(CONCAT(STR(?this), '#MF_00583a74')) AS ?annotation74) . BIND(?this AS ?pfs73) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch274 faldo:location ?templateMotifSequenceMatchRegionQ97CA5275 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ97CA5277 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarQ97CA5MF_00583_A270 . ?templateMotifSequenceMatchRegionQ97CA5275 faldo:begin ?templateMotifSequenceMatchBeginQ97CA5276 . ?templateMotifSequenceMatchBeginQ97CA5276 faldo:position ?templateMotifSequenceMatchBeginPositionQ97CA5271 ; faldo:reference isoform:Q97CA5-1 . ?templateMotifSequenceProfileAlignmentOperationQ97CA5277 edam:has_input signature:MF_00583_A ; rdf:type edam:operation_0300 . ?targetMotifMatch278 faldo:location ?targetMotifMatchRegionMatch279 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00583_A281 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarQ97CA5MF_00583_A272 . ?targetMotifMatchRegionMatch279 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00583_A280 . ?targetMotifMatchRegionMatchBeginMF_00583_A280 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00583_A273 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_00583_A281 edam:has_input signature:MF_00583_A ; rdf:type edam:operation_0300 . ?this up:organism ?thisOrganism . ?thisOrganism rdfs:subClassOf+ taxon:2157 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ97CA5MF_00583_A270, 1, (STRLEN(?templateMotifCigarQ97CA5MF_00583_A270) - STRLEN(REPLACE(?templateMotifCigarQ97CA5MF_00583_A270, CONCAT('^(?:-*[^-]){', STR(((210 - ?templateMotifSequenceMatchBeginPositionQ97CA5271) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1282) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ97CA5MF_00583_A272, 1, (STRLEN(?targetMotifMatchCigarQ97CA5MF_00583_A272) - STRLEN(REPLACE(?targetMotifMatchCigarQ97CA5MF_00583_A272, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1282), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ97CA5MF_00583_A272, 1, (STRLEN(?targetMotifMatchCigarQ97CA5MF_00583_A272) - STRLEN(REPLACE(?targetMotifMatchCigarQ97CA5MF_00583_A272, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1282), '}'), '')))), '[^-]', ''))) AS ?step2283) . BIND(((?step2283 + ?targetMotifMatchRegionMatchBeginPositionMF_00583_A273) - 1) AS ?thisPositionOn85) . BIND(?thisPositionOn85 AS ?thisPositionOn86) . BIND(?this AS ?pfs3t284) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn85))) AS ?pfsb82) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn86))) AS ?pfse83) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn85, 1) = 'D')) . BIND(URI(CONCAT(STR(?this), '#MF_00583a81')) AS ?annotation81) . BIND(?this AS ?pfs80) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch289 faldo:location ?templateMotifSequenceMatchRegionP14193290 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP14193292 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP14193MF_00583_B285 . ?templateMotifSequenceMatchRegionP14193290 faldo:begin ?templateMotifSequenceMatchBeginP14193291 . ?templateMotifSequenceMatchBeginP14193291 faldo:position ?templateMotifSequenceMatchBeginPositionP14193286 ; faldo:reference isoform:P14193-1 . ?templateMotifSequenceProfileAlignmentOperationP14193292 edam:has_input signature:MF_00583_B ; rdf:type edam:operation_0300 . ?targetMotifMatch293 faldo:location ?targetMotifMatchRegionMatch294 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00583_B296 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP14193MF_00583_B287 . ?targetMotifMatchRegionMatch294 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00583_B295 . ?targetMotifMatchRegionMatchBeginMF_00583_B295 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00583_B288 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_00583_B296 edam:has_input signature:MF_00583_B ; rdf:type edam:operation_0300 . ?this up:organism ?thisOrganism . ?thisOrganism rdfs:subClassOf+ taxon:2 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP14193MF_00583_B285, 1, (STRLEN(?templateMotifCigarP14193MF_00583_B285) - STRLEN(REPLACE(?templateMotifCigarP14193MF_00583_B285, CONCAT('^(?:-*[^-]){', STR(((43 - ?templateMotifSequenceMatchBeginPositionP14193286) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1297) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP14193MF_00583_B287, 1, (STRLEN(?targetMotifMatchCigarP14193MF_00583_B287) - STRLEN(REPLACE(?targetMotifMatchCigarP14193MF_00583_B287, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1297), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP14193MF_00583_B287, 1, (STRLEN(?targetMotifMatchCigarP14193MF_00583_B287) - STRLEN(REPLACE(?targetMotifMatchCigarP14193MF_00583_B287, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1297), '}'), '')))), '[^-]', ''))) AS ?step2298) . BIND(((?step2298 + ?targetMotifMatchRegionMatchBeginPositionMF_00583_B288) - 1) AS ?thisPositionOn92) . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP14193MF_00583_B285, 1, (STRLEN(?templateMotifCigarP14193MF_00583_B285) - STRLEN(REPLACE(?templateMotifCigarP14193MF_00583_B285, CONCAT('^(?:-*[^-]){', STR(((45 - ?templateMotifSequenceMatchBeginPositionP14193286) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1299) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP14193MF_00583_B287, 1, (STRLEN(?targetMotifMatchCigarP14193MF_00583_B287) - STRLEN(REPLACE(?targetMotifMatchCigarP14193MF_00583_B287, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1299), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP14193MF_00583_B287, 1, (STRLEN(?targetMotifMatchCigarP14193MF_00583_B287) - STRLEN(REPLACE(?targetMotifMatchCigarP14193MF_00583_B287, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1299), '}'), '')))), '[^-]', ''))) AS ?step2300) . BIND(((?step2300 + ?targetMotifMatchRegionMatchBeginPositionMF_00583_B288) - 1) AS ?thisPositionOn93) . BIND(?this AS ?pfs4t301) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn92))) AS ?pfsb89) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn93))) AS ?pfse90) . FILTER (REGEX('[DN][ARNDCQEGHILKMFPSTWYVBZJUOX][EN]', SUBSTR(?thisSequenceValue, ?thisPositionOn92, (?thisPositionOn93 - ?thisPositionOn92)))) . BIND(URI(CONCAT(STR(?this), '#MF_00583a88')) AS ?annotation88) . BIND(?this AS ?pfs87) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch306 faldo:location ?templateMotifSequenceMatchRegionP14193307 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP14193309 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP14193MF_00583_B302 . ?templateMotifSequenceMatchRegionP14193307 faldo:begin ?templateMotifSequenceMatchBeginP14193308 . ?templateMotifSequenceMatchBeginP14193308 faldo:position ?templateMotifSequenceMatchBeginPositionP14193303 ; faldo:reference isoform:P14193-1 . ?templateMotifSequenceProfileAlignmentOperationP14193309 edam:has_input signature:MF_00583_B ; rdf:type edam:operation_0300 . ?targetMotifMatch310 faldo:location ?targetMotifMatchRegionMatch311 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00583_B313 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP14193MF_00583_B304 . ?targetMotifMatchRegionMatch311 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00583_B312 . ?targetMotifMatchRegionMatchBeginMF_00583_B312 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00583_B305 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_00583_B313 edam:has_input signature:MF_00583_B ; rdf:type edam:operation_0300 . ?this up:organism ?thisOrganism . ?thisOrganism rdfs:subClassOf+ taxon:2 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP14193MF_00583_B302, 1, (STRLEN(?templateMotifCigarP14193MF_00583_B302) - STRLEN(REPLACE(?templateMotifCigarP14193MF_00583_B302, CONCAT('^(?:-*[^-]){', STR(((102 - ?templateMotifSequenceMatchBeginPositionP14193303) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1314) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP14193MF_00583_B304, 1, (STRLEN(?targetMotifMatchCigarP14193MF_00583_B304) - STRLEN(REPLACE(?targetMotifMatchCigarP14193MF_00583_B304, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1314), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP14193MF_00583_B304, 1, (STRLEN(?targetMotifMatchCigarP14193MF_00583_B304) - STRLEN(REPLACE(?targetMotifMatchCigarP14193MF_00583_B304, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1314), '}'), '')))), '[^-]', ''))) AS ?step2315) . BIND(((?step2315 + ?targetMotifMatchRegionMatchBeginPositionMF_00583_B305) - 1) AS ?thisPositionOn99) . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP14193MF_00583_B302, 1, (STRLEN(?templateMotifCigarP14193MF_00583_B302) - STRLEN(REPLACE(?templateMotifCigarP14193MF_00583_B302, CONCAT('^(?:-*[^-]){', STR(((103 - ?templateMotifSequenceMatchBeginPositionP14193303) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1316) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP14193MF_00583_B304, 1, (STRLEN(?targetMotifMatchCigarP14193MF_00583_B304) - STRLEN(REPLACE(?targetMotifMatchCigarP14193MF_00583_B304, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1316), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP14193MF_00583_B304, 1, (STRLEN(?targetMotifMatchCigarP14193MF_00583_B304) - STRLEN(REPLACE(?targetMotifMatchCigarP14193MF_00583_B304, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1316), '}'), '')))), '[^-]', ''))) AS ?step2317) . BIND(((?step2317 + ?targetMotifMatchRegionMatchBeginPositionMF_00583_B305) - 1) AS ?thisPositionOn100) . BIND(?this AS ?pfs4t318) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn99))) AS ?pfsb96) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn100))) AS ?pfse97) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn99, (?thisPositionOn100 - ?thisPositionOn99)) = 'RQ')) . BIND(URI(CONCAT(STR(?this), '#MF_00583a95')) AS ?annotation95) . BIND(?this AS ?pfs94) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch323 faldo:location ?templateMotifSequenceMatchRegionP14193324 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP14193326 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP14193MF_00583_B319 . ?templateMotifSequenceMatchRegionP14193324 faldo:begin ?templateMotifSequenceMatchBeginP14193325 . ?templateMotifSequenceMatchBeginP14193325 faldo:position ?templateMotifSequenceMatchBeginPositionP14193320 ; faldo:reference isoform:P14193-1 . ?templateMotifSequenceProfileAlignmentOperationP14193326 edam:has_input signature:MF_00583_B ; rdf:type edam:operation_0300 . ?targetMotifMatch327 faldo:location ?targetMotifMatchRegionMatch328 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00583_B330 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP14193MF_00583_B321 . ?targetMotifMatchRegionMatch328 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00583_B329 . ?targetMotifMatchRegionMatchBeginMF_00583_B329 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00583_B322 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_00583_B330 edam:has_input signature:MF_00583_B ; rdf:type edam:operation_0300 . ?this up:organism ?thisOrganism . ?thisOrganism rdfs:subClassOf+ taxon:2 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP14193MF_00583_B319, 1, (STRLEN(?templateMotifCigarP14193MF_00583_B319) - STRLEN(REPLACE(?templateMotifCigarP14193MF_00583_B319, CONCAT('^(?:-*[^-]){', STR(((228 - ?templateMotifSequenceMatchBeginPositionP14193320) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1331) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP14193MF_00583_B321, 1, (STRLEN(?targetMotifMatchCigarP14193MF_00583_B321) - STRLEN(REPLACE(?targetMotifMatchCigarP14193MF_00583_B321, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1331), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP14193MF_00583_B321, 1, (STRLEN(?targetMotifMatchCigarP14193MF_00583_B321) - STRLEN(REPLACE(?targetMotifMatchCigarP14193MF_00583_B321, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1331), '}'), '')))), '[^-]', ''))) AS ?step2332) . BIND(((?step2332 + ?targetMotifMatchRegionMatchBeginPositionMF_00583_B322) - 1) AS ?thisPositionOn106) . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP14193MF_00583_B319, 1, (STRLEN(?templateMotifCigarP14193MF_00583_B319) - STRLEN(REPLACE(?templateMotifCigarP14193MF_00583_B319, CONCAT('^(?:-*[^-]){', STR(((232 - ?templateMotifSequenceMatchBeginPositionP14193320) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1333) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP14193MF_00583_B321, 1, (STRLEN(?targetMotifMatchCigarP14193MF_00583_B321) - STRLEN(REPLACE(?targetMotifMatchCigarP14193MF_00583_B321, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1333), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP14193MF_00583_B321, 1, (STRLEN(?targetMotifMatchCigarP14193MF_00583_B321) - STRLEN(REPLACE(?targetMotifMatchCigarP14193MF_00583_B321, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1333), '}'), '')))), '[^-]', ''))) AS ?step2334) . BIND(((?step2334 + ?targetMotifMatchRegionMatchBeginPositionMF_00583_B322) - 1) AS ?thisPositionOn107) . BIND(?this AS ?pfs4t335) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn106))) AS ?pfsb103) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn107))) AS ?pfse104) . FILTER (REGEX('[DN][TS][AG][ARNDCQEGHILKMFPSTWYVBZJUOX][TS]', SUBSTR(?thisSequenceValue, ?thisPositionOn106, (?thisPositionOn107 - ?thisPositionOn106)))) . BIND(URI(CONCAT(STR(?this), '#MF_00583a102')) AS ?annotation102) . BIND(?this AS ?pfs101) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch340 faldo:location ?templateMotifSequenceMatchRegionP14193341 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP14193343 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP14193MF_00583_B336 . ?templateMotifSequenceMatchRegionP14193341 faldo:begin ?templateMotifSequenceMatchBeginP14193342 . ?templateMotifSequenceMatchBeginP14193342 faldo:position ?templateMotifSequenceMatchBeginPositionP14193337 ; faldo:reference isoform:P14193-1 . ?templateMotifSequenceProfileAlignmentOperationP14193343 edam:has_input signature:MF_00583_B ; rdf:type edam:operation_0300 . ?targetMotifMatch344 faldo:location ?targetMotifMatchRegionMatch345 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00583_B347 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP14193MF_00583_B338 . ?targetMotifMatchRegionMatch345 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00583_B346 . ?targetMotifMatchRegionMatchBeginMF_00583_B346 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00583_B339 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_00583_B347 edam:has_input signature:MF_00583_B ; rdf:type edam:operation_0300 . ?this up:organism ?thisOrganism . ?thisOrganism rdfs:subClassOf+ taxon:2 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP14193MF_00583_B336, 1, (STRLEN(?templateMotifCigarP14193MF_00583_B336) - STRLEN(REPLACE(?templateMotifCigarP14193MF_00583_B336, CONCAT('^(?:-*[^-]){', STR(((136 - ?templateMotifSequenceMatchBeginPositionP14193337) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1348) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP14193MF_00583_B338, 1, (STRLEN(?targetMotifMatchCigarP14193MF_00583_B338) - STRLEN(REPLACE(?targetMotifMatchCigarP14193MF_00583_B338, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1348), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP14193MF_00583_B338, 1, (STRLEN(?targetMotifMatchCigarP14193MF_00583_B338) - STRLEN(REPLACE(?targetMotifMatchCigarP14193MF_00583_B338, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1348), '}'), '')))), '[^-]', ''))) AS ?step2349) . BIND(((?step2349 + ?targetMotifMatchRegionMatchBeginPositionMF_00583_B339) - 1) AS ?thisPositionOn113) . BIND(?thisPositionOn113 AS ?thisPositionOn114) . BIND(?this AS ?pfs4t350) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn113))) AS ?pfsb110) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn114))) AS ?pfse111) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn113, 1) = 'H')) . BIND(URI(CONCAT(STR(?this), '#MF_00583a109')) AS ?annotation109) . BIND(?this AS ?pfs108) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch355 faldo:location ?templateMotifSequenceMatchRegionP14193356 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP14193358 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP14193MF_00583_B351 . ?templateMotifSequenceMatchRegionP14193356 faldo:begin ?templateMotifSequenceMatchBeginP14193357 . ?templateMotifSequenceMatchBeginP14193357 faldo:position ?templateMotifSequenceMatchBeginPositionP14193352 ; faldo:reference isoform:P14193-1 . ?templateMotifSequenceProfileAlignmentOperationP14193358 edam:has_input signature:MF_00583_B ; rdf:type edam:operation_0300 . ?targetMotifMatch359 faldo:location ?targetMotifMatchRegionMatch360 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00583_B362 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP14193MF_00583_B353 . ?targetMotifMatchRegionMatch360 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00583_B361 . ?targetMotifMatchRegionMatchBeginMF_00583_B361 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00583_B354 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_00583_B362 edam:has_input signature:MF_00583_B ; rdf:type edam:operation_0300 . ?this up:organism ?thisOrganism . ?thisOrganism rdfs:subClassOf+ taxon:2 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP14193MF_00583_B351, 1, (STRLEN(?templateMotifCigarP14193MF_00583_B351) - STRLEN(REPLACE(?templateMotifCigarP14193MF_00583_B351, CONCAT('^(?:-*[^-]){', STR(((200 - ?templateMotifSequenceMatchBeginPositionP14193352) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1363) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP14193MF_00583_B353, 1, (STRLEN(?targetMotifMatchCigarP14193MF_00583_B353) - STRLEN(REPLACE(?targetMotifMatchCigarP14193MF_00583_B353, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1363), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP14193MF_00583_B353, 1, (STRLEN(?targetMotifMatchCigarP14193MF_00583_B353) - STRLEN(REPLACE(?targetMotifMatchCigarP14193MF_00583_B353, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1363), '}'), '')))), '[^-]', ''))) AS ?step2364) . BIND(((?step2364 + ?targetMotifMatchRegionMatchBeginPositionMF_00583_B354) - 1) AS ?thisPositionOn120) . BIND(?thisPositionOn120 AS ?thisPositionOn121) . BIND(?this AS ?pfs4t365) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn120))) AS ?pfsb117) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn121))) AS ?pfse118) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn120, 1) = 'R')) . BIND(URI(CONCAT(STR(?this), '#MF_00583a116')) AS ?annotation116) . BIND(?this AS ?pfs115) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch370 faldo:location ?templateMotifSequenceMatchRegionP14193371 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP14193373 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP14193MF_00583_B366 . ?templateMotifSequenceMatchRegionP14193371 faldo:begin ?templateMotifSequenceMatchBeginP14193372 . ?templateMotifSequenceMatchBeginP14193372 faldo:position ?templateMotifSequenceMatchBeginPositionP14193367 ; faldo:reference isoform:P14193-1 . ?templateMotifSequenceProfileAlignmentOperationP14193373 edam:has_input signature:MF_00583_B ; rdf:type edam:operation_0300 . ?targetMotifMatch374 faldo:location ?targetMotifMatchRegionMatch375 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00583_B377 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP14193MF_00583_B368 . ?targetMotifMatchRegionMatch375 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00583_B376 . ?targetMotifMatchRegionMatchBeginMF_00583_B376 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00583_B369 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_00583_B377 edam:has_input signature:MF_00583_B ; rdf:type edam:operation_0300 . ?this up:organism ?thisOrganism . ?thisOrganism rdfs:subClassOf+ taxon:2 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP14193MF_00583_B366, 1, (STRLEN(?templateMotifCigarP14193MF_00583_B366) - STRLEN(REPLACE(?templateMotifCigarP14193MF_00583_B366, CONCAT('^(?:-*[^-]){', STR(((224 - ?templateMotifSequenceMatchBeginPositionP14193367) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1378) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP14193MF_00583_B368, 1, (STRLEN(?targetMotifMatchCigarP14193MF_00583_B368) - STRLEN(REPLACE(?targetMotifMatchCigarP14193MF_00583_B368, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1378), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP14193MF_00583_B368, 1, (STRLEN(?targetMotifMatchCigarP14193MF_00583_B368) - STRLEN(REPLACE(?targetMotifMatchCigarP14193MF_00583_B368, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1378), '}'), '')))), '[^-]', ''))) AS ?step2379) . BIND(((?step2379 + ?targetMotifMatchRegionMatchBeginPositionMF_00583_B369) - 1) AS ?thisPositionOn127) . BIND(?thisPositionOn127 AS ?thisPositionOn128) . BIND(?this AS ?pfs4t380) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn127))) AS ?pfsb124) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn128))) AS ?pfse125) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn127, 1) = 'D')) . BIND(URI(CONCAT(STR(?this), '#MF_00583a123')) AS ?annotation123) . BIND(?this AS ?pfs122) . } OPTIONAL { ?this a up:Protein . ?this up:organism ?thisOrganism . ?thisOrganism rdfs:subClassOf+ taxon:2157 . BIND(?this AS ?case10) . } OPTIONAL { ?this a up:Protein . ?this up:organism ?thisOrganism . ?thisOrganism rdfs:subClassOf+ taxon:2 . BIND(?this AS ?case11) . } OPTIONAL { ?this a up:Protein . ?this up:organism ?thisOrganism . FILTER (! (EXISTS { ?thisOrganism rdfs:subClassOf+ taxon:2157 . })) . BIND(?this AS ?case12) . } OPTIONAL { ?this a up:Protein . ?this up:organism ?thisOrganism . FILTER (! (EXISTS { ?thisOrganism rdfs:subClassOf+ taxon:2 . })) . BIND(?this AS ?caseWithTag381) . BIND(URI(CONCAT(STR(?this), '#MF_00583a14')) AS ?name14) . } BIND(IF(BOUND(?tagDiv), ?caseWithTag381, ?UNBOUND_VARIABLE) AS ?case13) . OPTIONAL { ?this a up:Protein . ?this up:organism ?thisOrganism . ?thisOrganism rdfs:subClassOf+ taxon:2 . BIND(?this AS ?caseWithTag382) . BIND(URI(CONCAT(STR(?this), '#MF_00583a16')) AS ?name16) . } BIND(IF(BOUND(?tagDiv), ?caseWithTag382, ?UNBOUND_VARIABLE) AS ?case15) . OPTIONAL { ?this a up:Protein . ?this up:organism ?thisOrganism . FILTER (! (EXISTS { ?thisOrganism rdfs:subClassOf+ taxon:2 . })) . BIND(?this AS ?caseWithTag383) . } BIND(IF(BOUND(?tagMetal), ?caseWithTag383, ?UNBOUND_VARIABLE) AS ?case17) . OPTIONAL { ?this a up:Protein . ?this up:organism ?thisOrganism . ?thisOrganism rdfs:subClassOf+ taxon:2 . BIND(?this AS ?caseWithTag384) . } BIND(IF(BOUND(?tagMetal), ?caseWithTag384, ?UNBOUND_VARIABLE) AS ?case18) . }