CONSTRUCT { _:245518 up:source unirule:MF_00641 . _:245519 up:source unirule:MF_00641 . _:245520 up:source unirule:MF_00641 . _:245521 up:source unirule:MF_00641 . _:245522 up:source unirule:MF_00641 . _:245523 up:source unirule:MF_00641 . _:245524 up:source unirule:MF_00641 . _:245525 up:source unirule:MF_00641 . _:245526 up:source unirule:MF_00641 . _:245527 up:source unirule:MF_00641 . _:245528 up:source unirule:MF_00641 . _:245529 up:source unirule:MF_00641 . _:245530 up:source unirule:MF_00641 . _:245531 up:source unirule:MF_00641 . _:245532 up:source unirule:MF_00641 . _:245533 up:source unirule:MF_00641 . _:245534 up:source unirule:MF_00641 . _:245535 up:source unirule:MF_00641 . _:245536 up:source unirule:MF_00641 . _:245537 up:source unirule:MF_00641 . _:245538 up:source unirule:MF_00641 . _:245539 up:source unirule:MF_00641 . _:245540 up:source unirule:MF_00641 . _:245541 up:source unirule:MF_00641 . _:245542 up:source unirule:MF_00641 . _:245543 up:source unirule:MF_00641 . _:245544 up:source unirule:MF_00641 . _:245545 up:source unirule:MF_00641 . _:245546 up:source unirule:MF_00641 . _:245547 up:source unirule:MF_00641 . _:245548 up:source unirule:MF_00641 . _:245549 up:source unirule:MF_00641 . _:245550 up:source unirule:MF_00641 . ?this up:annotation ?annotation2 , ?annotation3 , ?annotation5 , ?annotation6 , ?annotation7 , ?annotation8 , ?annotation10 ; up:classifiedWith GO:0004474 , GO:0005737 , GO:0006097 , keyword:329 , keyword:460 , keyword:479 , keyword:558 , keyword:808 , keyword:816 , keyword:963 ; up:recommendedName ?name0 . ?name0 up:ecName '2.3.3.9' ; up:fullName 'Malate synthase G' ; rdf:type up:Structured_Name . ?gene1 skos:prefLabel 'glcB' . ?annotation2 a up:Function_Annotation ; rdfs:comment 'Involved in the glycolate utilization. Catalyzes the condensation and subsequent hydrolysis of acetyl-coenzyme A (acetyl-CoA) and glyoxylate to form malate and CoA.' . ?annotation3 up:activity ?activity4 ; rdf:type up:Catalytic_Activity_Annotation . ?activity4 up:catalyticActivity <http://rdf.rhea-db.org/18181>; up:enzymeClass <http://purl.uniprot.org/enzyme/2.3.3.9>. ?annotation5 up:cofactor chebi:18420 ; rdf:type up:Cofactor_Annotation . ?annotation6 a up:Pathway_Annotation ; rdfs:comment 'Carbohydrate metabolism; glyoxylate cycle; (S)-malate from isocitrate: step 2/2.' . ?annotation7 a up:Subunit_Annotation ; rdfs:comment 'Monomer.' . ?annotation8 a up:Subcellular_Location_Annotation . ?annotation8li9 up:cellularComponent <http://purl.uniprot.org/locations/null>. ?annotation10 a up:Similarity_Annotation ; rdfs:comment 'Belongs to the malate synthase family. GlcB subfamily.' . ?pfs11 up:annotation ?annotation12 . ?annotation12 faldo:begin ?pfsb13 ; faldo:end ?pfse14 ; up:ligand ?ligand15 ; rdf:type up:Binding_Site_Annotation . ?pfsb13 faldo:position ?thisPositionOn16 ; rdf:type faldo:ExactPosition . ?pfse14 faldo:position ?thisPositionOn17 ; rdf:type faldo:ExactPosition . ?ligand15 rdfs:subClassOf chebi:57288 . ?pfs18 up:annotation ?annotation19 . ?annotation19 faldo:begin ?pfsb20 ; faldo:end ?pfse21 ; up:ligand ?ligand22 ; rdf:type up:Binding_Site_Annotation . ?pfsb20 faldo:position ?thisPositionOn23 ; rdf:type faldo:ExactPosition . ?pfse21 faldo:position ?thisPositionOn24 ; rdf:type faldo:ExactPosition . ?ligand22 rdfs:subClassOf chebi:36655 . ?pfs25 up:annotation ?annotation26 . ?annotation26 faldo:begin ?pfsb27 ; faldo:end ?pfse28 ; rdf:type up:Active_Site_Annotation ; rdfs:comment 'Proton acceptor' . ?pfsb27 faldo:position ?thisPositionOn29 ; rdf:type faldo:ExactPosition . ?pfse28 faldo:position ?thisPositionOn30 ; rdf:type faldo:ExactPosition . ?pfs31 up:annotation ?annotation32 . ?annotation32 faldo:begin ?pfsb33 ; faldo:end ?pfse34 ; rdf:type up:Active_Site_Annotation ; rdfs:comment 'Proton donor' . ?pfsb33 faldo:position ?thisPositionOn35 ; rdf:type faldo:ExactPosition . ?pfse34 faldo:position ?thisPositionOn36 ; rdf:type faldo:ExactPosition . ?pfs37 up:annotation ?annotation38 . ?annotation38 faldo:begin ?pfsb39 ; faldo:end ?pfse40 ; up:ligand ?ligand41 ; rdf:type up:Binding_Site_Annotation . ?pfsb39 faldo:position ?thisPositionOn42 ; rdf:type faldo:ExactPosition . ?pfse40 faldo:position ?thisPositionOn43 ; rdf:type faldo:ExactPosition . ?ligand41 rdfs:subClassOf chebi:18420 . ?pfs44 up:annotation ?annotation45 . ?annotation45 faldo:begin ?pfsb46 ; faldo:end ?pfse47 ; up:ligand ?ligand48 ; rdf:type up:Binding_Site_Annotation . ?pfsb46 faldo:position ?thisPositionOn49 ; rdf:type faldo:ExactPosition . ?pfse47 faldo:position ?thisPositionOn50 ; rdf:type faldo:ExactPosition . ?ligand48 rdfs:subClassOf chebi:18420 . ?pfs51 up:annotation ?annotation52 . ?annotation52 faldo:begin ?pfsb53 ; faldo:end ?pfse54 ; up:ligand ?ligand55 ; rdf:type up:Binding_Site_Annotation . ?pfsb53 faldo:position ?thisPositionOn56 ; rdf:type faldo:ExactPosition . ?pfse54 faldo:position ?thisPositionOn57 ; rdf:type faldo:ExactPosition . ?ligand55 rdfs:subClassOf chebi:57288 . ?pfs58 up:annotation ?annotation59 . ?annotation59 faldo:begin ?pfsb60 ; faldo:end ?pfse61 ; up:ligand ?ligand62 ; rdf:type up:Binding_Site_Annotation . ?pfsb60 faldo:position ?thisPositionOn63 ; rdf:type faldo:ExactPosition . ?pfse61 faldo:position ?thisPositionOn64 ; rdf:type faldo:ExactPosition . ?ligand62 rdfs:subClassOf chebi:57288 . ?pfs65 up:annotation ?annotation66 . ?annotation66 faldo:begin ?pfsb67 ; faldo:end ?pfse68 ; up:ligand ?ligand69 ; rdf:type up:Binding_Site_Annotation . ?pfsb67 faldo:position ?thisPositionOn70 ; rdf:type faldo:ExactPosition . ?pfse68 faldo:position ?thisPositionOn71 ; rdf:type faldo:ExactPosition . ?ligand69 rdfs:subClassOf chebi:57288 . ?pfs72 up:annotation ?annotation73 . ?annotation73 faldo:begin ?pfsb74 ; faldo:end ?pfse75 ; up:ligand ?ligand76 ; rdf:type up:Binding_Site_Annotation . ?pfsb74 faldo:position ?thisPositionOn77 ; rdf:type faldo:ExactPosition . ?pfse75 faldo:position ?thisPositionOn78 ; rdf:type faldo:ExactPosition . ?ligand76 rdfs:subClassOf chebi:36655 . ?pfs79 up:annotation ?annotation80 . ?annotation80 faldo:begin ?pfsb81 ; faldo:end ?pfse82 ; up:ligand ?ligand83 ; rdf:type up:Binding_Site_Annotation . ?pfsb81 faldo:position ?thisPositionOn84 ; rdf:type faldo:ExactPosition . ?pfse82 faldo:position ?thisPositionOn85 ; rdf:type faldo:ExactPosition . ?ligand83 rdfs:subClassOf chebi:36655 . ?pfs86 up:annotation ?annotation87 . ?annotation87 faldo:begin ?pfsb88 ; faldo:end ?pfse89 ; up:ligand ?ligand90 ; rdf:type up:Binding_Site_Annotation . ?pfsb88 faldo:position ?thisPositionOn91 ; rdf:type faldo:ExactPosition . ?pfse89 faldo:position ?thisPositionOn92 ; rdf:type faldo:ExactPosition . ?ligand90 rdfs:subClassOf chebi:57288 . ?pfs93 up:annotation ?annotation94 . ?annotation94 faldo:begin ?pfsb95 ; faldo:end ?pfse96 ; rdf:type up:Modified_Residue_Annotation ; rdfs:comment 'Cysteine sulfenic acid (-SOH)' . ?pfsb95 faldo:position ?thisPositionOn97 ; rdf:type faldo:ExactPosition . ?pfse96 faldo:position ?thisPositionOn98 ; rdf:type faldo:ExactPosition . ?pfs99 up:annotation ?annotation100 . ?annotation100 faldo:begin ?pfsb101 ; faldo:end ?pfse102 ; rdf:type up:Modified_Residue_Annotation ; rdfs:comment 'Cysteine sulfenic acid (-SOH)' . ?pfsb101 faldo:position ?thisPositionOn103 ; rdf:type faldo:ExactPosition . ?pfse102 faldo:position ?thisPositionOn104 ; rdf:type faldo:ExactPosition . _:245551 a rdf:Statement ; up:attribution _:245518 ; rdf:subject ?this ; rdf:predicate up:recommendedName ; rdf:object ?name0 . _:245552 a rdf:Statement ; up:attribution _:245519 ; rdf:subject ?gene1 ; rdf:predicate up:encodedBy ; rdf:object ?gene1 . _:245553 a rdf:Statement ; up:attribution _:245520 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation2 . _:245554 a rdf:Statement ; up:attribution _:245521 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation3 . _:245555 a rdf:Statement ; up:attribution _:245522 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation5 . _:245556 a rdf:Statement ; up:attribution _:245523 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation6 . _:245557 a rdf:Statement ; up:attribution _:245524 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation7 . _:245558 a rdf:Statement ; up:attribution _:245525 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation8 . _:245559 a rdf:Statement ; up:attribution _:245526 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation10 . _:245560 a rdf:Statement ; up:attribution _:245527 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:963 . _:245561 a rdf:Statement ; up:attribution _:245528 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:808 . _:245562 a rdf:Statement ; up:attribution _:245529 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:329 . _:245563 a rdf:Statement ; up:attribution _:245530 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:460 . _:245564 a rdf:Statement ; up:attribution _:245531 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:479 . _:245565 a rdf:Statement ; up:attribution _:245532 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:816 . _:245566 a rdf:Statement ; up:attribution _:245533 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:558 . _:245567 a rdf:Statement ; up:attribution _:245534 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object GO:0004474 . _:245568 a rdf:Statement ; up:attribution _:245535 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object GO:0006097 . _:245569 a rdf:Statement ; up:attribution _:245536 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object GO:0005737 . _:245570 a rdf:Statement ; up:source unirule:MF_00641 ; rdf:subject ?pfs11 ; rdf:predicate up:annotation ; rdf:object ?annotation12 . _:245571 a rdf:Statement ; up:attribution _:245537 ; rdf:subject ?pfs11 ; rdf:predicate up:annotation ; rdf:object ?annotation12 . _:245572 a rdf:Statement ; up:source unirule:MF_00641 ; rdf:subject ?pfs18 ; rdf:predicate up:annotation ; rdf:object ?annotation19 . _:245573 a rdf:Statement ; up:attribution _:245538 ; rdf:subject ?pfs18 ; rdf:predicate up:annotation ; rdf:object ?annotation19 . _:245574 a rdf:Statement ; up:source unirule:MF_00641 ; rdf:subject ?pfs25 ; rdf:predicate up:annotation ; rdf:object ?annotation26 . _:245575 a rdf:Statement ; up:attribution _:245539 ; rdf:subject ?pfs25 ; rdf:predicate up:annotation ; rdf:object ?annotation26 . _:245576 a rdf:Statement ; up:source unirule:MF_00641 ; rdf:subject ?pfs31 ; rdf:predicate up:annotation ; rdf:object ?annotation32 . _:245577 a rdf:Statement ; up:attribution _:245540 ; rdf:subject ?pfs31 ; rdf:predicate up:annotation ; rdf:object ?annotation32 . _:245578 a rdf:Statement ; up:source unirule:MF_00641 ; rdf:subject ?pfs37 ; rdf:predicate up:annotation ; rdf:object ?annotation38 . _:245579 a rdf:Statement ; up:attribution _:245541 ; rdf:subject ?pfs37 ; rdf:predicate up:annotation ; rdf:object ?annotation38 . _:245580 a rdf:Statement ; up:source unirule:MF_00641 ; rdf:subject ?pfs44 ; rdf:predicate up:annotation ; rdf:object ?annotation45 . _:245581 a rdf:Statement ; up:attribution _:245542 ; rdf:subject ?pfs44 ; rdf:predicate up:annotation ; rdf:object ?annotation45 . _:245582 a rdf:Statement ; up:source unirule:MF_00641 ; rdf:subject ?pfs51 ; rdf:predicate up:annotation ; rdf:object ?annotation52 . _:245583 a rdf:Statement ; up:attribution _:245543 ; rdf:subject ?pfs51 ; rdf:predicate up:annotation ; rdf:object ?annotation52 . _:245584 a rdf:Statement ; up:source unirule:MF_00641 ; rdf:subject ?pfs58 ; rdf:predicate up:annotation ; rdf:object ?annotation59 . _:245585 a rdf:Statement ; up:attribution _:245544 ; rdf:subject ?pfs58 ; rdf:predicate up:annotation ; rdf:object ?annotation59 . _:245586 a rdf:Statement ; up:source unirule:MF_00641 ; rdf:subject ?pfs65 ; rdf:predicate up:annotation ; rdf:object ?annotation66 . _:245587 a rdf:Statement ; up:attribution _:245545 ; rdf:subject ?pfs65 ; rdf:predicate up:annotation ; rdf:object ?annotation66 . _:245588 a rdf:Statement ; up:source unirule:MF_00641 ; rdf:subject ?pfs72 ; rdf:predicate up:annotation ; rdf:object ?annotation73 . _:245589 a rdf:Statement ; up:attribution _:245546 ; rdf:subject ?pfs72 ; rdf:predicate up:annotation ; rdf:object ?annotation73 . _:245590 a rdf:Statement ; up:source unirule:MF_00641 ; rdf:subject ?pfs79 ; rdf:predicate up:annotation ; rdf:object ?annotation80 . _:245591 a rdf:Statement ; up:attribution _:245547 ; rdf:subject ?pfs79 ; rdf:predicate up:annotation ; rdf:object ?annotation80 . _:245592 a rdf:Statement ; up:source unirule:MF_00641 ; rdf:subject ?pfs86 ; rdf:predicate up:annotation ; rdf:object ?annotation87 . _:245593 a rdf:Statement ; up:attribution _:245548 ; rdf:subject ?pfs86 ; rdf:predicate up:annotation ; rdf:object ?annotation87 . _:245594 a rdf:Statement ; up:source unirule:MF_00641 ; rdf:subject ?pfs93 ; rdf:predicate up:annotation ; rdf:object ?annotation94 . _:245595 a rdf:Statement ; up:attribution _:245549 ; rdf:subject ?pfs93 ; rdf:predicate up:annotation ; rdf:object ?annotation94 . _:245596 a rdf:Statement ; up:source unirule:MF_00641 ; rdf:subject ?pfs99 ; rdf:predicate up:annotation ; rdf:object ?annotation100 . _:245597 a rdf:Statement ; up:attribution _:245550 ; rdf:subject ?pfs99 ; rdf:predicate up:annotation ; rdf:object ?annotation100 . } WHERE { #baseURI: http://purl.uniprot.org/unirule/MF_00641 #Rule MF_00641 Created by:? on:2005-02-28 Modified by:Edouard de Castro on:2024-09-02 ?this up:organism ?thisOrganism ; rdfs:seeAlso signature:MF_00641 . ?thisOrganism rdfs:subClassOf+ taxon:2 . BIND(URI(CONCAT(STR(?this), '#MF_00641a0')) AS ?name0) . BIND(URI(CONCAT(STR(?this), '#MF_00641a2')) AS ?annotation2) . BIND(URI(CONCAT(STR(?this), '#MF_00641a3')) AS ?annotation3) . BIND(URI(CONCAT(STR(?this), '#MF_00641a5')) AS ?annotation5) . BIND(URI(CONCAT(STR(?this), '#MF_00641a6')) AS ?annotation6) . BIND(URI(CONCAT(STR(?this), '#MF_00641a7')) AS ?annotation7) . BIND(URI(CONCAT(STR(?this), '#MF_00641a8')) AS ?annotation8) . BIND(URI(CONCAT(STR(?this), '#MF_00641a10')) AS ?annotation10) . OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch109 faldo:location ?templateMotifSequenceMatchRegionP37330110 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP37330112 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP37330MF_00641105 . ?templateMotifSequenceMatchRegionP37330110 faldo:begin ?templateMotifSequenceMatchBeginP37330111 . ?templateMotifSequenceMatchBeginP37330111 faldo:position ?templateMotifSequenceMatchBeginPositionP37330106 ; faldo:reference isoform:P37330-1 . ?templateMotifSequenceProfileAlignmentOperationP37330112 edam:has_input signature:MF_00641 ; rdf:type edam:operation_0300 . ?targetMotifMatch113 faldo:location ?targetMotifMatchRegionMatch114 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00641116 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP37330MF_00641107 . ?targetMotifMatchRegionMatch114 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00641115 . ?targetMotifMatchRegionMatchBeginMF_00641115 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00641108 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_00641116 edam:has_input signature:MF_00641 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP37330MF_00641105, 1, (STRLEN(?templateMotifCigarP37330MF_00641105) - STRLEN(REPLACE(?templateMotifCigarP37330MF_00641105, CONCAT('^(?:-*[^-]){', STR(((125 - ?templateMotifSequenceMatchBeginPositionP37330106) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1117) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP37330MF_00641107, 1, (STRLEN(?targetMotifMatchCigarP37330MF_00641107) - STRLEN(REPLACE(?targetMotifMatchCigarP37330MF_00641107, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1117), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP37330MF_00641107, 1, (STRLEN(?targetMotifMatchCigarP37330MF_00641107) - STRLEN(REPLACE(?targetMotifMatchCigarP37330MF_00641107, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1117), '}'), '')))), '[^-]', ''))) AS ?step2118) . BIND(((?step2118 + ?targetMotifMatchRegionMatchBeginPositionMF_00641108) - 1) AS ?thisPositionOn16) . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP37330MF_00641105, 1, (STRLEN(?templateMotifCigarP37330MF_00641105) - STRLEN(REPLACE(?templateMotifCigarP37330MF_00641105, CONCAT('^(?:-*[^-]){', STR(((126 - ?templateMotifSequenceMatchBeginPositionP37330106) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1119) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP37330MF_00641107, 1, (STRLEN(?targetMotifMatchCigarP37330MF_00641107) - STRLEN(REPLACE(?targetMotifMatchCigarP37330MF_00641107, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1119), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP37330MF_00641107, 1, (STRLEN(?targetMotifMatchCigarP37330MF_00641107) - STRLEN(REPLACE(?targetMotifMatchCigarP37330MF_00641107, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1119), '}'), '')))), '[^-]', ''))) AS ?step2120) . BIND(((?step2120 + ?targetMotifMatchRegionMatchBeginPositionMF_00641108) - 1) AS ?thisPositionOn17) . BIND(?this AS ?pfs1t121) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn16))) AS ?pfsb13) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn17))) AS ?pfse14) . FILTER ((BOUND(?thisPositionOn16) && BOUND(?thisPositionOn17))) . BIND(URI(CONCAT(STR(?this), '#MF_00641a12')) AS ?annotation12) . BIND(?this AS ?pfs11) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch126 faldo:location ?templateMotifSequenceMatchRegionP37330127 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP37330129 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP37330MF_00641122 . ?templateMotifSequenceMatchRegionP37330127 faldo:begin ?templateMotifSequenceMatchBeginP37330128 . ?templateMotifSequenceMatchBeginP37330128 faldo:position ?templateMotifSequenceMatchBeginPositionP37330123 ; faldo:reference isoform:P37330-1 . ?templateMotifSequenceProfileAlignmentOperationP37330129 edam:has_input signature:MF_00641 ; rdf:type edam:operation_0300 . ?targetMotifMatch130 faldo:location ?targetMotifMatchRegionMatch131 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00641133 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP37330MF_00641124 . ?targetMotifMatchRegionMatch131 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00641132 . ?targetMotifMatchRegionMatchBeginMF_00641132 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00641125 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_00641133 edam:has_input signature:MF_00641 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP37330MF_00641122, 1, (STRLEN(?templateMotifCigarP37330MF_00641122) - STRLEN(REPLACE(?templateMotifCigarP37330MF_00641122, CONCAT('^(?:-*[^-]){', STR(((452 - ?templateMotifSequenceMatchBeginPositionP37330123) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1134) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP37330MF_00641124, 1, (STRLEN(?targetMotifMatchCigarP37330MF_00641124) - STRLEN(REPLACE(?targetMotifMatchCigarP37330MF_00641124, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1134), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP37330MF_00641124, 1, (STRLEN(?targetMotifMatchCigarP37330MF_00641124) - STRLEN(REPLACE(?targetMotifMatchCigarP37330MF_00641124, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1134), '}'), '')))), '[^-]', ''))) AS ?step2135) . BIND(((?step2135 + ?targetMotifMatchRegionMatchBeginPositionMF_00641125) - 1) AS ?thisPositionOn23) . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP37330MF_00641122, 1, (STRLEN(?templateMotifCigarP37330MF_00641122) - STRLEN(REPLACE(?templateMotifCigarP37330MF_00641122, CONCAT('^(?:-*[^-]){', STR(((455 - ?templateMotifSequenceMatchBeginPositionP37330123) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1136) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP37330MF_00641124, 1, (STRLEN(?targetMotifMatchCigarP37330MF_00641124) - STRLEN(REPLACE(?targetMotifMatchCigarP37330MF_00641124, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1136), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP37330MF_00641124, 1, (STRLEN(?targetMotifMatchCigarP37330MF_00641124) - STRLEN(REPLACE(?targetMotifMatchCigarP37330MF_00641124, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1136), '}'), '')))), '[^-]', ''))) AS ?step2137) . BIND(((?step2137 + ?targetMotifMatchRegionMatchBeginPositionMF_00641125) - 1) AS ?thisPositionOn24) . BIND(?this AS ?pfs1t138) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn23))) AS ?pfsb20) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn24))) AS ?pfse21) . FILTER ((BOUND(?thisPositionOn23) && BOUND(?thisPositionOn24))) . BIND(URI(CONCAT(STR(?this), '#MF_00641a19')) AS ?annotation19) . BIND(?this AS ?pfs18) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch143 faldo:location ?templateMotifSequenceMatchRegionP37330144 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP37330146 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP37330MF_00641139 . ?templateMotifSequenceMatchRegionP37330144 faldo:begin ?templateMotifSequenceMatchBeginP37330145 . ?templateMotifSequenceMatchBeginP37330145 faldo:position ?templateMotifSequenceMatchBeginPositionP37330140 ; faldo:reference isoform:P37330-1 . ?templateMotifSequenceProfileAlignmentOperationP37330146 edam:has_input signature:MF_00641 ; rdf:type edam:operation_0300 . ?targetMotifMatch147 faldo:location ?targetMotifMatchRegionMatch148 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00641150 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP37330MF_00641141 . ?targetMotifMatchRegionMatch148 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00641149 . ?targetMotifMatchRegionMatchBeginMF_00641149 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00641142 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_00641150 edam:has_input signature:MF_00641 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP37330MF_00641139, 1, (STRLEN(?templateMotifCigarP37330MF_00641139) - STRLEN(REPLACE(?templateMotifCigarP37330MF_00641139, CONCAT('^(?:-*[^-]){', STR(((338 - ?templateMotifSequenceMatchBeginPositionP37330140) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1151) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP37330MF_00641141, 1, (STRLEN(?targetMotifMatchCigarP37330MF_00641141) - STRLEN(REPLACE(?targetMotifMatchCigarP37330MF_00641141, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1151), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP37330MF_00641141, 1, (STRLEN(?targetMotifMatchCigarP37330MF_00641141) - STRLEN(REPLACE(?targetMotifMatchCigarP37330MF_00641141, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1151), '}'), '')))), '[^-]', ''))) AS ?step2152) . BIND(((?step2152 + ?targetMotifMatchRegionMatchBeginPositionMF_00641142) - 1) AS ?thisPositionOn29) . BIND(?thisPositionOn29 AS ?thisPositionOn30) . BIND(?this AS ?pfs1t153) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn29))) AS ?pfsb27) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn30))) AS ?pfse28) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn29, 1) = 'R')) . BIND(URI(CONCAT(STR(?this), '#MF_00641a26')) AS ?annotation26) . BIND(?this AS ?pfs25) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch158 faldo:location ?templateMotifSequenceMatchRegionP37330159 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP37330161 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP37330MF_00641154 . ?templateMotifSequenceMatchRegionP37330159 faldo:begin ?templateMotifSequenceMatchBeginP37330160 . ?templateMotifSequenceMatchBeginP37330160 faldo:position ?templateMotifSequenceMatchBeginPositionP37330155 ; faldo:reference isoform:P37330-1 . ?templateMotifSequenceProfileAlignmentOperationP37330161 edam:has_input signature:MF_00641 ; rdf:type edam:operation_0300 . ?targetMotifMatch162 faldo:location ?targetMotifMatchRegionMatch163 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00641165 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP37330MF_00641156 . ?targetMotifMatchRegionMatch163 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00641164 . ?targetMotifMatchRegionMatchBeginMF_00641164 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00641157 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_00641165 edam:has_input signature:MF_00641 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP37330MF_00641154, 1, (STRLEN(?templateMotifCigarP37330MF_00641154) - STRLEN(REPLACE(?templateMotifCigarP37330MF_00641154, CONCAT('^(?:-*[^-]){', STR(((631 - ?templateMotifSequenceMatchBeginPositionP37330155) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1166) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP37330MF_00641156, 1, (STRLEN(?targetMotifMatchCigarP37330MF_00641156) - STRLEN(REPLACE(?targetMotifMatchCigarP37330MF_00641156, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1166), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP37330MF_00641156, 1, (STRLEN(?targetMotifMatchCigarP37330MF_00641156) - STRLEN(REPLACE(?targetMotifMatchCigarP37330MF_00641156, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1166), '}'), '')))), '[^-]', ''))) AS ?step2167) . BIND(((?step2167 + ?targetMotifMatchRegionMatchBeginPositionMF_00641157) - 1) AS ?thisPositionOn35) . BIND(?thisPositionOn35 AS ?thisPositionOn36) . BIND(?this AS ?pfs1t168) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn35))) AS ?pfsb33) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn36))) AS ?pfse34) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn35, 1) = 'D')) . BIND(URI(CONCAT(STR(?this), '#MF_00641a32')) AS ?annotation32) . BIND(?this AS ?pfs31) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch173 faldo:location ?templateMotifSequenceMatchRegionP37330174 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP37330176 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP37330MF_00641169 . ?templateMotifSequenceMatchRegionP37330174 faldo:begin ?templateMotifSequenceMatchBeginP37330175 . ?templateMotifSequenceMatchBeginP37330175 faldo:position ?templateMotifSequenceMatchBeginPositionP37330170 ; faldo:reference isoform:P37330-1 . ?templateMotifSequenceProfileAlignmentOperationP37330176 edam:has_input signature:MF_00641 ; rdf:type edam:operation_0300 . ?targetMotifMatch177 faldo:location ?targetMotifMatchRegionMatch178 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00641180 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP37330MF_00641171 . ?targetMotifMatchRegionMatch178 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00641179 . ?targetMotifMatchRegionMatchBeginMF_00641179 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00641172 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_00641180 edam:has_input signature:MF_00641 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP37330MF_00641169, 1, (STRLEN(?templateMotifCigarP37330MF_00641169) - STRLEN(REPLACE(?templateMotifCigarP37330MF_00641169, CONCAT('^(?:-*[^-]){', STR(((427 - ?templateMotifSequenceMatchBeginPositionP37330170) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1181) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP37330MF_00641171, 1, (STRLEN(?targetMotifMatchCigarP37330MF_00641171) - STRLEN(REPLACE(?targetMotifMatchCigarP37330MF_00641171, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1181), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP37330MF_00641171, 1, (STRLEN(?targetMotifMatchCigarP37330MF_00641171) - STRLEN(REPLACE(?targetMotifMatchCigarP37330MF_00641171, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1181), '}'), '')))), '[^-]', ''))) AS ?step2182) . BIND(((?step2182 + ?targetMotifMatchRegionMatchBeginPositionMF_00641172) - 1) AS ?thisPositionOn42) . BIND(?thisPositionOn42 AS ?thisPositionOn43) . BIND(?this AS ?pfs1t183) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn42))) AS ?pfsb39) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn43))) AS ?pfse40) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn42, 1) = 'E')) . BIND(URI(CONCAT(STR(?this), '#MF_00641a38')) AS ?annotation38) . BIND(?this AS ?pfs37) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch188 faldo:location ?templateMotifSequenceMatchRegionP37330189 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP37330191 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP37330MF_00641184 . ?templateMotifSequenceMatchRegionP37330189 faldo:begin ?templateMotifSequenceMatchBeginP37330190 . ?templateMotifSequenceMatchBeginP37330190 faldo:position ?templateMotifSequenceMatchBeginPositionP37330185 ; faldo:reference isoform:P37330-1 . ?templateMotifSequenceProfileAlignmentOperationP37330191 edam:has_input signature:MF_00641 ; rdf:type edam:operation_0300 . ?targetMotifMatch192 faldo:location ?targetMotifMatchRegionMatch193 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00641195 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP37330MF_00641186 . ?targetMotifMatchRegionMatch193 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00641194 . ?targetMotifMatchRegionMatchBeginMF_00641194 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00641187 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_00641195 edam:has_input signature:MF_00641 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP37330MF_00641184, 1, (STRLEN(?templateMotifCigarP37330MF_00641184) - STRLEN(REPLACE(?templateMotifCigarP37330MF_00641184, CONCAT('^(?:-*[^-]){', STR(((455 - ?templateMotifSequenceMatchBeginPositionP37330185) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1196) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP37330MF_00641186, 1, (STRLEN(?targetMotifMatchCigarP37330MF_00641186) - STRLEN(REPLACE(?targetMotifMatchCigarP37330MF_00641186, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1196), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP37330MF_00641186, 1, (STRLEN(?targetMotifMatchCigarP37330MF_00641186) - STRLEN(REPLACE(?targetMotifMatchCigarP37330MF_00641186, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1196), '}'), '')))), '[^-]', ''))) AS ?step2197) . BIND(((?step2197 + ?targetMotifMatchRegionMatchBeginPositionMF_00641187) - 1) AS ?thisPositionOn49) . BIND(?thisPositionOn49 AS ?thisPositionOn50) . BIND(?this AS ?pfs1t198) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn49))) AS ?pfsb46) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn50))) AS ?pfse47) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn49, 1) = 'D')) . BIND(URI(CONCAT(STR(?this), '#MF_00641a45')) AS ?annotation45) . BIND(?this AS ?pfs44) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch203 faldo:location ?templateMotifSequenceMatchRegionP37330204 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP37330206 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP37330MF_00641199 . ?templateMotifSequenceMatchRegionP37330204 faldo:begin ?templateMotifSequenceMatchBeginP37330205 . ?templateMotifSequenceMatchBeginP37330205 faldo:position ?templateMotifSequenceMatchBeginPositionP37330200 ; faldo:reference isoform:P37330-1 . ?templateMotifSequenceProfileAlignmentOperationP37330206 edam:has_input signature:MF_00641 ; rdf:type edam:operation_0300 . ?targetMotifMatch207 faldo:location ?targetMotifMatchRegionMatch208 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00641210 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP37330MF_00641201 . ?targetMotifMatchRegionMatch208 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00641209 . ?targetMotifMatchRegionMatchBeginMF_00641209 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00641202 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_00641210 edam:has_input signature:MF_00641 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP37330MF_00641199, 1, (STRLEN(?templateMotifCigarP37330MF_00641199) - STRLEN(REPLACE(?templateMotifCigarP37330MF_00641199, CONCAT('^(?:-*[^-]){', STR(((118 - ?templateMotifSequenceMatchBeginPositionP37330200) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1211) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP37330MF_00641201, 1, (STRLEN(?targetMotifMatchCigarP37330MF_00641201) - STRLEN(REPLACE(?targetMotifMatchCigarP37330MF_00641201, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1211), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP37330MF_00641201, 1, (STRLEN(?targetMotifMatchCigarP37330MF_00641201) - STRLEN(REPLACE(?targetMotifMatchCigarP37330MF_00641201, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1211), '}'), '')))), '[^-]', ''))) AS ?step2212) . BIND(((?step2212 + ?targetMotifMatchRegionMatchBeginPositionMF_00641202) - 1) AS ?thisPositionOn56) . BIND(?thisPositionOn56 AS ?thisPositionOn57) . BIND(?this AS ?pfs1t213) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn56))) AS ?pfsb53) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn57))) AS ?pfse54) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn56, 1) = 'V')) . BIND(URI(CONCAT(STR(?this), '#MF_00641a52')) AS ?annotation52) . BIND(?this AS ?pfs51) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch218 faldo:location ?templateMotifSequenceMatchRegionP37330219 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP37330221 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP37330MF_00641214 . ?templateMotifSequenceMatchRegionP37330219 faldo:begin ?templateMotifSequenceMatchBeginP37330220 . ?templateMotifSequenceMatchBeginP37330220 faldo:position ?templateMotifSequenceMatchBeginPositionP37330215 ; faldo:reference isoform:P37330-1 . ?templateMotifSequenceProfileAlignmentOperationP37330221 edam:has_input signature:MF_00641 ; rdf:type edam:operation_0300 . ?targetMotifMatch222 faldo:location ?targetMotifMatchRegionMatch223 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00641225 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP37330MF_00641216 . ?targetMotifMatchRegionMatch223 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00641224 . ?targetMotifMatchRegionMatchBeginMF_00641224 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00641217 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_00641225 edam:has_input signature:MF_00641 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP37330MF_00641214, 1, (STRLEN(?templateMotifCigarP37330MF_00641214) - STRLEN(REPLACE(?templateMotifCigarP37330MF_00641214, CONCAT('^(?:-*[^-]){', STR(((274 - ?templateMotifSequenceMatchBeginPositionP37330215) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1226) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP37330MF_00641216, 1, (STRLEN(?targetMotifMatchCigarP37330MF_00641216) - STRLEN(REPLACE(?targetMotifMatchCigarP37330MF_00641216, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1226), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP37330MF_00641216, 1, (STRLEN(?targetMotifMatchCigarP37330MF_00641216) - STRLEN(REPLACE(?targetMotifMatchCigarP37330MF_00641216, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1226), '}'), '')))), '[^-]', ''))) AS ?step2227) . BIND(((?step2227 + ?targetMotifMatchRegionMatchBeginPositionMF_00641217) - 1) AS ?thisPositionOn63) . BIND(?thisPositionOn63 AS ?thisPositionOn64) . BIND(?this AS ?pfs1t228) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn63))) AS ?pfsb60) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn64))) AS ?pfse61) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn63, 1) = 'S')) . BIND(URI(CONCAT(STR(?this), '#MF_00641a59')) AS ?annotation59) . BIND(?this AS ?pfs58) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch233 faldo:location ?templateMotifSequenceMatchRegionP37330234 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP37330236 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP37330MF_00641229 . ?templateMotifSequenceMatchRegionP37330234 faldo:begin ?templateMotifSequenceMatchBeginP37330235 . ?templateMotifSequenceMatchBeginP37330235 faldo:position ?templateMotifSequenceMatchBeginPositionP37330230 ; faldo:reference isoform:P37330-1 . ?templateMotifSequenceProfileAlignmentOperationP37330236 edam:has_input signature:MF_00641 ; rdf:type edam:operation_0300 . ?targetMotifMatch237 faldo:location ?targetMotifMatchRegionMatch238 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00641240 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP37330MF_00641231 . ?targetMotifMatchRegionMatch238 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00641239 . ?targetMotifMatchRegionMatchBeginMF_00641239 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00641232 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_00641240 edam:has_input signature:MF_00641 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP37330MF_00641229, 1, (STRLEN(?templateMotifCigarP37330MF_00641229) - STRLEN(REPLACE(?templateMotifCigarP37330MF_00641229, CONCAT('^(?:-*[^-]){', STR(((311 - ?templateMotifSequenceMatchBeginPositionP37330230) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1241) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP37330MF_00641231, 1, (STRLEN(?targetMotifMatchCigarP37330MF_00641231) - STRLEN(REPLACE(?targetMotifMatchCigarP37330MF_00641231, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1241), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP37330MF_00641231, 1, (STRLEN(?targetMotifMatchCigarP37330MF_00641231) - STRLEN(REPLACE(?targetMotifMatchCigarP37330MF_00641231, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1241), '}'), '')))), '[^-]', ''))) AS ?step2242) . BIND(((?step2242 + ?targetMotifMatchRegionMatchBeginPositionMF_00641232) - 1) AS ?thisPositionOn70) . BIND(?thisPositionOn70 AS ?thisPositionOn71) . BIND(?this AS ?pfs1t243) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn70))) AS ?pfsb67) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn71))) AS ?pfse68) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn70, 1) = 'R')) . BIND(URI(CONCAT(STR(?this), '#MF_00641a66')) AS ?annotation66) . BIND(?this AS ?pfs65) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch248 faldo:location ?templateMotifSequenceMatchRegionP37330249 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP37330251 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP37330MF_00641244 . ?templateMotifSequenceMatchRegionP37330249 faldo:begin ?templateMotifSequenceMatchBeginP37330250 . ?templateMotifSequenceMatchBeginP37330250 faldo:position ?templateMotifSequenceMatchBeginPositionP37330245 ; faldo:reference isoform:P37330-1 . ?templateMotifSequenceProfileAlignmentOperationP37330251 edam:has_input signature:MF_00641 ; rdf:type edam:operation_0300 . ?targetMotifMatch252 faldo:location ?targetMotifMatchRegionMatch253 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00641255 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP37330MF_00641246 . ?targetMotifMatchRegionMatch253 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00641254 . ?targetMotifMatchRegionMatchBeginMF_00641254 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00641247 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_00641255 edam:has_input signature:MF_00641 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP37330MF_00641244, 1, (STRLEN(?templateMotifCigarP37330MF_00641244) - STRLEN(REPLACE(?templateMotifCigarP37330MF_00641244, CONCAT('^(?:-*[^-]){', STR(((338 - ?templateMotifSequenceMatchBeginPositionP37330245) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1256) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP37330MF_00641246, 1, (STRLEN(?targetMotifMatchCigarP37330MF_00641246) - STRLEN(REPLACE(?targetMotifMatchCigarP37330MF_00641246, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1256), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP37330MF_00641246, 1, (STRLEN(?targetMotifMatchCigarP37330MF_00641246) - STRLEN(REPLACE(?targetMotifMatchCigarP37330MF_00641246, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1256), '}'), '')))), '[^-]', ''))) AS ?step2257) . BIND(((?step2257 + ?targetMotifMatchRegionMatchBeginPositionMF_00641247) - 1) AS ?thisPositionOn77) . BIND(?thisPositionOn77 AS ?thisPositionOn78) . BIND(?this AS ?pfs1t258) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn77))) AS ?pfsb74) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn78))) AS ?pfse75) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn77, 1) = 'R')) . BIND(URI(CONCAT(STR(?this), '#MF_00641a73')) AS ?annotation73) . BIND(?this AS ?pfs72) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch263 faldo:location ?templateMotifSequenceMatchRegionP37330264 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP37330266 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP37330MF_00641259 . ?templateMotifSequenceMatchRegionP37330264 faldo:begin ?templateMotifSequenceMatchBeginP37330265 . ?templateMotifSequenceMatchBeginP37330265 faldo:position ?templateMotifSequenceMatchBeginPositionP37330260 ; faldo:reference isoform:P37330-1 . ?templateMotifSequenceProfileAlignmentOperationP37330266 edam:has_input signature:MF_00641 ; rdf:type edam:operation_0300 . ?targetMotifMatch267 faldo:location ?targetMotifMatchRegionMatch268 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00641270 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP37330MF_00641261 . ?targetMotifMatchRegionMatch268 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00641269 . ?targetMotifMatchRegionMatchBeginMF_00641269 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00641262 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_00641270 edam:has_input signature:MF_00641 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP37330MF_00641259, 1, (STRLEN(?templateMotifCigarP37330MF_00641259) - STRLEN(REPLACE(?templateMotifCigarP37330MF_00641259, CONCAT('^(?:-*[^-]){', STR(((427 - ?templateMotifSequenceMatchBeginPositionP37330260) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1271) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP37330MF_00641261, 1, (STRLEN(?targetMotifMatchCigarP37330MF_00641261) - STRLEN(REPLACE(?targetMotifMatchCigarP37330MF_00641261, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1271), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP37330MF_00641261, 1, (STRLEN(?targetMotifMatchCigarP37330MF_00641261) - STRLEN(REPLACE(?targetMotifMatchCigarP37330MF_00641261, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1271), '}'), '')))), '[^-]', ''))) AS ?step2272) . BIND(((?step2272 + ?targetMotifMatchRegionMatchBeginPositionMF_00641262) - 1) AS ?thisPositionOn84) . BIND(?thisPositionOn84 AS ?thisPositionOn85) . BIND(?this AS ?pfs1t273) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn84))) AS ?pfsb81) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn85))) AS ?pfse82) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn84, 1) = 'E')) . BIND(URI(CONCAT(STR(?this), '#MF_00641a80')) AS ?annotation80) . BIND(?this AS ?pfs79) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch278 faldo:location ?templateMotifSequenceMatchRegionP37330279 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP37330281 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP37330MF_00641274 . ?templateMotifSequenceMatchRegionP37330279 faldo:begin ?templateMotifSequenceMatchBeginP37330280 . ?templateMotifSequenceMatchBeginP37330280 faldo:position ?templateMotifSequenceMatchBeginPositionP37330275 ; faldo:reference isoform:P37330-1 . ?templateMotifSequenceProfileAlignmentOperationP37330281 edam:has_input signature:MF_00641 ; rdf:type edam:operation_0300 . ?targetMotifMatch282 faldo:location ?targetMotifMatchRegionMatch283 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00641285 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP37330MF_00641276 . ?targetMotifMatchRegionMatch283 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00641284 . ?targetMotifMatchRegionMatchBeginMF_00641284 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00641277 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_00641285 edam:has_input signature:MF_00641 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP37330MF_00641274, 1, (STRLEN(?templateMotifCigarP37330MF_00641274) - STRLEN(REPLACE(?templateMotifCigarP37330MF_00641274, CONCAT('^(?:-*[^-]){', STR(((536 - ?templateMotifSequenceMatchBeginPositionP37330275) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1286) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP37330MF_00641276, 1, (STRLEN(?targetMotifMatchCigarP37330MF_00641276) - STRLEN(REPLACE(?targetMotifMatchCigarP37330MF_00641276, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1286), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP37330MF_00641276, 1, (STRLEN(?targetMotifMatchCigarP37330MF_00641276) - STRLEN(REPLACE(?targetMotifMatchCigarP37330MF_00641276, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1286), '}'), '')))), '[^-]', ''))) AS ?step2287) . BIND(((?step2287 + ?targetMotifMatchRegionMatchBeginPositionMF_00641277) - 1) AS ?thisPositionOn91) . BIND(?thisPositionOn91 AS ?thisPositionOn92) . BIND(?this AS ?pfs1t288) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn91))) AS ?pfsb88) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn92))) AS ?pfse89) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn91, 1) = 'P')) . BIND(URI(CONCAT(STR(?this), '#MF_00641a87')) AS ?annotation87) . BIND(?this AS ?pfs86) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch293 faldo:location ?templateMotifSequenceMatchRegionP37330294 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP37330296 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP37330MF_00641289 . ?templateMotifSequenceMatchRegionP37330294 faldo:begin ?templateMotifSequenceMatchBeginP37330295 . ?templateMotifSequenceMatchBeginP37330295 faldo:position ?templateMotifSequenceMatchBeginPositionP37330290 ; faldo:reference isoform:P37330-1 . ?templateMotifSequenceProfileAlignmentOperationP37330296 edam:has_input signature:MF_00641 ; rdf:type edam:operation_0300 . ?targetMotifMatch297 faldo:location ?targetMotifMatchRegionMatch298 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00641300 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP37330MF_00641291 . ?targetMotifMatchRegionMatch298 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00641299 . ?targetMotifMatchRegionMatchBeginMF_00641299 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00641292 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_00641300 edam:has_input signature:MF_00641 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP37330MF_00641289, 1, (STRLEN(?templateMotifCigarP37330MF_00641289) - STRLEN(REPLACE(?templateMotifCigarP37330MF_00641289, CONCAT('^(?:-*[^-]){', STR(((617 - ?templateMotifSequenceMatchBeginPositionP37330290) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1301) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP37330MF_00641291, 1, (STRLEN(?targetMotifMatchCigarP37330MF_00641291) - STRLEN(REPLACE(?targetMotifMatchCigarP37330MF_00641291, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1301), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP37330MF_00641291, 1, (STRLEN(?targetMotifMatchCigarP37330MF_00641291) - STRLEN(REPLACE(?targetMotifMatchCigarP37330MF_00641291, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1301), '}'), '')))), '[^-]', ''))) AS ?step2302) . BIND(((?step2302 + ?targetMotifMatchRegionMatchBeginPositionMF_00641292) - 1) AS ?thisPositionOn97) . BIND(?thisPositionOn97 AS ?thisPositionOn98) . BIND(?this AS ?pfs1t303) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn97))) AS ?pfsb95) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn98))) AS ?pfse96) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn97, 1) = 'C')) . BIND(URI(CONCAT(STR(?this), '#MF_00641a94')) AS ?annotation94) . BIND(?this AS ?pfs93) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch308 faldo:location ?templateMotifSequenceMatchRegionP37330309 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP37330311 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP37330MF_00641304 . ?templateMotifSequenceMatchRegionP37330309 faldo:begin ?templateMotifSequenceMatchBeginP37330310 . ?templateMotifSequenceMatchBeginP37330310 faldo:position ?templateMotifSequenceMatchBeginPositionP37330305 ; faldo:reference isoform:P37330-1 . ?templateMotifSequenceProfileAlignmentOperationP37330311 edam:has_input signature:MF_00641 ; rdf:type edam:operation_0300 . ?targetMotifMatch312 faldo:location ?targetMotifMatchRegionMatch313 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00641315 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP37330MF_00641306 . ?targetMotifMatchRegionMatch313 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00641314 . ?targetMotifMatchRegionMatchBeginMF_00641314 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00641307 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_00641315 edam:has_input signature:MF_00641 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP37330MF_00641304, 1, (STRLEN(?templateMotifCigarP37330MF_00641304) - STRLEN(REPLACE(?templateMotifCigarP37330MF_00641304, CONCAT('^(?:-*[^-]){', STR(((688 - ?templateMotifSequenceMatchBeginPositionP37330305) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1316) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP37330MF_00641306, 1, (STRLEN(?targetMotifMatchCigarP37330MF_00641306) - STRLEN(REPLACE(?targetMotifMatchCigarP37330MF_00641306, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1316), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP37330MF_00641306, 1, (STRLEN(?targetMotifMatchCigarP37330MF_00641306) - STRLEN(REPLACE(?targetMotifMatchCigarP37330MF_00641306, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1316), '}'), '')))), '[^-]', ''))) AS ?step2317) . BIND(((?step2317 + ?targetMotifMatchRegionMatchBeginPositionMF_00641307) - 1) AS ?thisPositionOn103) . BIND(?thisPositionOn103 AS ?thisPositionOn104) . BIND(?this AS ?pfs1t318) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn103))) AS ?pfsb101) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn104))) AS ?pfse102) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn103, 1) = 'C')) . BIND(URI(CONCAT(STR(?this), '#MF_00641a100')) AS ?annotation100) . BIND(?this AS ?pfs99) . } }