CONSTRUCT { _:268806 up:source unirule:MF_00732 . _:268807 up:source unirule:MF_00732 . _:268808 up:source unirule:MF_00732 . _:268809 up:source unirule:MF_00732 . _:268810 up:source unirule:MF_00732 . _:268811 up:source unirule:MF_00732 . _:268812 up:source unirule:MF_00732 . _:268813 up:source unirule:MF_00732 . _:268814 up:source unirule:MF_00732 . _:268815 up:source unirule:MF_00732 . _:268816 up:source unirule:MF_00732 . _:268817 up:source unirule:MF_00732 . _:268818 up:source unirule:MF_00732 . _:268819 up:source unirule:MF_00732 . _:268820 up:source unirule:MF_00732 . _:268821 up:source unirule:MF_00732 . _:268822 up:source unirule:MF_00732 . _:268823 up:source unirule:MF_00732 . _:268824 up:source unirule:MF_00732 . _:268825 up:source unirule:MF_00732 . _:268826 up:source unirule:MF_00732 . _:268827 up:source unirule:MF_00732 . _:268828 up:source unirule:MF_00732 . _:268829 up:source unirule:MF_00732 . _:268830 up:source unirule:MF_00732 . _:268831 up:source unirule:MF_00732 . _:268832 up:source unirule:MF_00732 . _:268833 up:source unirule:MF_00732 . _:268834 up:source unirule:MF_00732 . ?this up:alternativeName ?name1 ; up:annotation ?annotation3 , ?annotation4 , ?annotation5 , ?annotation6 , ?annotation8 ; up:classifiedWith GO:0003700 , GO:0005737 , GO:0006355 , GO:0030026 , GO:0030145 , keyword:10 , keyword:238 , keyword:464 , keyword:479 , keyword:678 , keyword:804 , keyword:805 , keyword:963 ; up:recommendedName ?name0 . ?name0 up:fullName 'HTH-type transcriptional regulator MntR' ; rdf:type up:Structured_Name . ?name1 up:fullName 'Manganese transport regulator' ; rdf:type up:Structured_Name . ?gene2 skos:prefLabel 'mntR' . ?annotation3 a up:Function_Annotation ; rdfs:comment 'Central regulator of manganese homeostasis.' . ?annotation4 a up:Activity_Regulation_Annotation ; rdfs:comment 'DNA binding is strongly activated by Mn(2+).' . ?annotation5 a up:Subunit_Annotation ; rdfs:comment 'Homodimer.' . ?annotation6 a up:Subcellular_Location_Annotation . ?annotation6li7 up:cellularComponent <http://purl.uniprot.org/locations/null>. ?annotation8 a up:Similarity_Annotation ; rdfs:comment 'Belongs to the DtxR/MntR family.' . ?pfs9 up:annotation ?annotation10 . ?annotation10 faldo:begin ?pfsb11 ; faldo:end ?pfse12 ; up:ligand ?ligand13 ; rdf:type up:Binding_Site_Annotation . ?pfsb11 faldo:position ?thisPositionOn14 ; rdf:type faldo:ExactPosition . ?pfse12 faldo:position ?thisPositionOn15 ; rdf:type faldo:ExactPosition . ?ligand13 rdfs:subClassOf chebi:29035 . ?pfs16 up:annotation ?annotation17 . ?annotation17 faldo:begin ?pfsb18 ; faldo:end ?pfse19 ; up:ligand ?ligand20 ; rdf:type up:Binding_Site_Annotation . ?pfsb18 faldo:position ?thisPositionOn21 ; rdf:type faldo:ExactPosition . ?pfse19 faldo:position ?thisPositionOn22 ; rdf:type faldo:ExactPosition . ?ligand20 rdfs:subClassOf chebi:29035 . ?pfs23 up:annotation ?annotation24 . ?annotation24 faldo:begin ?pfsb25 ; faldo:end ?pfse26 ; up:ligand ?ligand27 ; rdf:type up:Binding_Site_Annotation . ?pfsb25 faldo:position ?thisPositionOn28 ; rdf:type faldo:ExactPosition . ?pfse26 faldo:position ?thisPositionOn29 ; rdf:type faldo:ExactPosition . ?ligand27 rdfs:subClassOf chebi:29035 . ?pfs30 up:annotation ?annotation31 . ?annotation31 faldo:begin ?pfsb32 ; faldo:end ?pfse33 ; up:ligand ?ligand34 ; rdf:type up:Binding_Site_Annotation . ?pfsb32 faldo:position ?thisPositionOn35 ; rdf:type faldo:ExactPosition . ?pfse33 faldo:position ?thisPositionOn36 ; rdf:type faldo:ExactPosition . ?ligand34 rdfs:subClassOf chebi:29035 . ?pfs37 up:annotation ?annotation38 . ?annotation38 faldo:begin ?pfsb39 ; faldo:end ?pfse40 ; up:ligand ?ligand41 ; rdf:type up:Binding_Site_Annotation . ?pfsb39 faldo:position ?thisPositionOn42 ; rdf:type faldo:ExactPosition . ?pfse40 faldo:position ?thisPositionOn43 ; rdf:type faldo:ExactPosition . ?ligand41 rdfs:subClassOf chebi:29035 . ?pfs44 up:annotation ?annotation45 . ?annotation45 faldo:begin ?pfsb46 ; faldo:end ?pfse47 ; up:ligand ?ligand48 ; rdf:type up:Binding_Site_Annotation . ?pfsb46 faldo:position ?thisPositionOn49 ; rdf:type faldo:ExactPosition . ?pfse47 faldo:position ?thisPositionOn50 ; rdf:type faldo:ExactPosition . ?ligand48 rdfs:subClassOf chebi:29035 . ?pfs51 up:annotation ?annotation52 . ?annotation52 faldo:begin ?pfsb53 ; faldo:end ?pfse54 ; up:ligand ?ligand55 ; rdf:type up:Binding_Site_Annotation . ?pfsb53 faldo:position ?thisPositionOn56 ; rdf:type faldo:ExactPosition . ?pfse54 faldo:position ?thisPositionOn57 ; rdf:type faldo:ExactPosition . ?ligand55 rdfs:subClassOf chebi:29035 . ?pfs58 up:annotation ?annotation59 . ?annotation59 faldo:begin ?pfsb60 ; faldo:end ?pfse61 ; up:ligand ?ligand62 ; rdf:type up:Binding_Site_Annotation . ?pfsb60 faldo:position ?thisPositionOn63 ; rdf:type faldo:ExactPosition . ?pfse61 faldo:position ?thisPositionOn64 ; rdf:type faldo:ExactPosition . ?ligand62 rdfs:subClassOf chebi:29035 . _:268835 a rdf:Statement ; up:attribution _:268806 ; rdf:subject ?this ; rdf:predicate up:recommendedName ; rdf:object ?name0 . _:268836 a rdf:Statement ; up:attribution _:268807 ; rdf:subject ?this ; rdf:predicate up:alternativeName ; rdf:object ?name1 . _:268837 a rdf:Statement ; up:attribution _:268808 ; rdf:subject ?gene2 ; rdf:predicate up:encodedBy ; rdf:object ?gene2 . _:268838 a rdf:Statement ; up:attribution _:268809 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation3 . _:268839 a rdf:Statement ; up:attribution _:268810 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation4 . _:268840 a rdf:Statement ; up:attribution _:268811 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation5 . _:268841 a rdf:Statement ; up:attribution _:268812 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation6 . _:268842 a rdf:Statement ; up:attribution _:268813 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation8 . _:268843 a rdf:Statement ; up:attribution _:268814 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:10 . _:268844 a rdf:Statement ; up:attribution _:268815 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:963 . _:268845 a rdf:Statement ; up:attribution _:268816 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:238 . _:268846 a rdf:Statement ; up:attribution _:268817 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:464 . _:268847 a rdf:Statement ; up:attribution _:268818 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:479 . _:268848 a rdf:Statement ; up:attribution _:268819 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:678 . _:268849 a rdf:Statement ; up:attribution _:268820 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:804 . _:268850 a rdf:Statement ; up:attribution _:268821 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:805 . _:268851 a rdf:Statement ; up:attribution _:268822 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object GO:0030145 . _:268852 a rdf:Statement ; up:attribution _:268823 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object GO:0003700 . _:268853 a rdf:Statement ; up:attribution _:268824 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object GO:0030026 . _:268854 a rdf:Statement ; up:attribution _:268825 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object GO:0006355 . _:268855 a rdf:Statement ; up:attribution _:268826 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object GO:0005737 . _:268856 a rdf:Statement ; up:source unirule:MF_00732 ; rdf:subject ?pfs9 ; rdf:predicate up:annotation ; rdf:object ?annotation10 . _:268857 a rdf:Statement ; up:attribution _:268827 ; rdf:subject ?pfs9 ; rdf:predicate up:annotation ; rdf:object ?annotation10 . _:268858 a rdf:Statement ; up:source unirule:MF_00732 ; rdf:subject ?pfs16 ; rdf:predicate up:annotation ; rdf:object ?annotation17 . _:268859 a rdf:Statement ; up:attribution _:268828 ; rdf:subject ?pfs16 ; rdf:predicate up:annotation ; rdf:object ?annotation17 . _:268860 a rdf:Statement ; up:source unirule:MF_00732 ; rdf:subject ?pfs23 ; rdf:predicate up:annotation ; rdf:object ?annotation24 . _:268861 a rdf:Statement ; up:attribution _:268829 ; rdf:subject ?pfs23 ; rdf:predicate up:annotation ; rdf:object ?annotation24 . _:268862 a rdf:Statement ; up:source unirule:MF_00732 ; rdf:subject ?pfs30 ; rdf:predicate up:annotation ; rdf:object ?annotation31 . _:268863 a rdf:Statement ; up:attribution _:268830 ; rdf:subject ?pfs30 ; rdf:predicate up:annotation ; rdf:object ?annotation31 . _:268864 a rdf:Statement ; up:source unirule:MF_00732 ; rdf:subject ?pfs37 ; rdf:predicate up:annotation ; rdf:object ?annotation38 . _:268865 a rdf:Statement ; up:attribution _:268831 ; rdf:subject ?pfs37 ; rdf:predicate up:annotation ; rdf:object ?annotation38 . _:268866 a rdf:Statement ; up:source unirule:MF_00732 ; rdf:subject ?pfs44 ; rdf:predicate up:annotation ; rdf:object ?annotation45 . _:268867 a rdf:Statement ; up:attribution _:268832 ; rdf:subject ?pfs44 ; rdf:predicate up:annotation ; rdf:object ?annotation45 . _:268868 a rdf:Statement ; up:source unirule:MF_00732 ; rdf:subject ?pfs51 ; rdf:predicate up:annotation ; rdf:object ?annotation52 . _:268869 a rdf:Statement ; up:attribution _:268833 ; rdf:subject ?pfs51 ; rdf:predicate up:annotation ; rdf:object ?annotation52 . _:268870 a rdf:Statement ; up:source unirule:MF_00732 ; rdf:subject ?pfs58 ; rdf:predicate up:annotation ; rdf:object ?annotation59 . _:268871 a rdf:Statement ; up:attribution _:268834 ; rdf:subject ?pfs58 ; rdf:predicate up:annotation ; rdf:object ?annotation59 . } WHERE { #baseURI: http://purl.uniprot.org/unirule/MF_00732 #Rule MF_00732 Created by:? on:2005-02-28 Modified by:Catherine Rivoire on:2023-02-07 ?this up:organism ?thisOrganism ; rdfs:seeAlso signature:MF_00732 . ?thisOrganism rdfs:subClassOf+ taxon:91061 . BIND(URI(CONCAT(STR(?this), '#MF_00732a0')) AS ?name0) . BIND(URI(CONCAT(STR(?this), '#MF_00732a1')) AS ?name1) . BIND(URI(CONCAT(STR(?this), '#MF_00732a3')) AS ?annotation3) . BIND(URI(CONCAT(STR(?this), '#MF_00732a4')) AS ?annotation4) . BIND(URI(CONCAT(STR(?this), '#MF_00732a5')) AS ?annotation5) . BIND(URI(CONCAT(STR(?this), '#MF_00732a6')) AS ?annotation6) . BIND(URI(CONCAT(STR(?this), '#MF_00732a8')) AS ?annotation8) . OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch69 faldo:location ?templateMotifSequenceMatchRegionP5451270 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP5451272 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP54512MF_0073265 . ?templateMotifSequenceMatchRegionP5451270 faldo:begin ?templateMotifSequenceMatchBeginP5451271 . ?templateMotifSequenceMatchBeginP5451271 faldo:position ?templateMotifSequenceMatchBeginPositionP5451266 ; faldo:reference isoform:P54512-1 . ?templateMotifSequenceProfileAlignmentOperationP5451272 edam:has_input signature:MF_00732 ; rdf:type edam:operation_0300 . ?targetMotifMatch73 faldo:location ?targetMotifMatchRegionMatch74 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0073276 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP54512MF_0073267 . ?targetMotifMatchRegionMatch74 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0073275 . ?targetMotifMatchRegionMatchBeginMF_0073275 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0073268 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_0073276 edam:has_input signature:MF_00732 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP54512MF_0073265, 1, (STRLEN(?templateMotifCigarP54512MF_0073265) - STRLEN(REPLACE(?templateMotifCigarP54512MF_0073265, CONCAT('^(?:-*[^-]){', STR(((8 - ?templateMotifSequenceMatchBeginPositionP5451266) + 1)), '}'), '')))), '[a-z]', '')) AS ?step177) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP54512MF_0073267, 1, (STRLEN(?targetMotifMatchCigarP54512MF_0073267) - STRLEN(REPLACE(?targetMotifMatchCigarP54512MF_0073267, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step177), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP54512MF_0073267, 1, (STRLEN(?targetMotifMatchCigarP54512MF_0073267) - STRLEN(REPLACE(?targetMotifMatchCigarP54512MF_0073267, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step177), '}'), '')))), '[^-]', ''))) AS ?step278) . BIND(((?step278 + ?targetMotifMatchRegionMatchBeginPositionMF_0073268) - 1) AS ?thisPositionOn14) . BIND(?thisPositionOn14 AS ?thisPositionOn15) . BIND(?this AS ?pfs1t79) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn14))) AS ?pfsb11) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn15))) AS ?pfse12) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn14, 1) = 'D')) . BIND(URI(CONCAT(STR(?this), '#MF_00732a10')) AS ?annotation10) . BIND(?this AS ?pfs9) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch84 faldo:location ?templateMotifSequenceMatchRegionP5451285 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP5451287 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP54512MF_0073280 . ?templateMotifSequenceMatchRegionP5451285 faldo:begin ?templateMotifSequenceMatchBeginP5451286 . ?templateMotifSequenceMatchBeginP5451286 faldo:position ?templateMotifSequenceMatchBeginPositionP5451281 ; faldo:reference isoform:P54512-1 . ?templateMotifSequenceProfileAlignmentOperationP5451287 edam:has_input signature:MF_00732 ; rdf:type edam:operation_0300 . ?targetMotifMatch88 faldo:location ?targetMotifMatchRegionMatch89 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0073291 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP54512MF_0073282 . ?targetMotifMatchRegionMatch89 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0073290 . ?targetMotifMatchRegionMatchBeginMF_0073290 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0073283 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_0073291 edam:has_input signature:MF_00732 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP54512MF_0073280, 1, (STRLEN(?templateMotifCigarP54512MF_0073280) - STRLEN(REPLACE(?templateMotifCigarP54512MF_0073280, CONCAT('^(?:-*[^-]){', STR(((11 - ?templateMotifSequenceMatchBeginPositionP5451281) + 1)), '}'), '')))), '[a-z]', '')) AS ?step192) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP54512MF_0073282, 1, (STRLEN(?targetMotifMatchCigarP54512MF_0073282) - STRLEN(REPLACE(?targetMotifMatchCigarP54512MF_0073282, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step192), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP54512MF_0073282, 1, (STRLEN(?targetMotifMatchCigarP54512MF_0073282) - STRLEN(REPLACE(?targetMotifMatchCigarP54512MF_0073282, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step192), '}'), '')))), '[^-]', ''))) AS ?step293) . BIND(((?step293 + ?targetMotifMatchRegionMatchBeginPositionMF_0073283) - 1) AS ?thisPositionOn21) . BIND(?thisPositionOn21 AS ?thisPositionOn22) . BIND(?this AS ?pfs1t94) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn21))) AS ?pfsb18) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn22))) AS ?pfse19) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn21, 1) = 'E')) . BIND(URI(CONCAT(STR(?this), '#MF_00732a17')) AS ?annotation17) . BIND(?this AS ?pfs16) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch99 faldo:location ?templateMotifSequenceMatchRegionP54512100 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP54512102 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP54512MF_0073295 . ?templateMotifSequenceMatchRegionP54512100 faldo:begin ?templateMotifSequenceMatchBeginP54512101 . ?templateMotifSequenceMatchBeginP54512101 faldo:position ?templateMotifSequenceMatchBeginPositionP5451296 ; faldo:reference isoform:P54512-1 . ?templateMotifSequenceProfileAlignmentOperationP54512102 edam:has_input signature:MF_00732 ; rdf:type edam:operation_0300 . ?targetMotifMatch103 faldo:location ?targetMotifMatchRegionMatch104 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00732106 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP54512MF_0073297 . ?targetMotifMatchRegionMatch104 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00732105 . ?targetMotifMatchRegionMatchBeginMF_00732105 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0073298 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_00732106 edam:has_input signature:MF_00732 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP54512MF_0073295, 1, (STRLEN(?templateMotifCigarP54512MF_0073295) - STRLEN(REPLACE(?templateMotifCigarP54512MF_0073295, CONCAT('^(?:-*[^-]){', STR(((77 - ?templateMotifSequenceMatchBeginPositionP5451296) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1107) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP54512MF_0073297, 1, (STRLEN(?targetMotifMatchCigarP54512MF_0073297) - STRLEN(REPLACE(?targetMotifMatchCigarP54512MF_0073297, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1107), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP54512MF_0073297, 1, (STRLEN(?targetMotifMatchCigarP54512MF_0073297) - STRLEN(REPLACE(?targetMotifMatchCigarP54512MF_0073297, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1107), '}'), '')))), '[^-]', ''))) AS ?step2108) . BIND(((?step2108 + ?targetMotifMatchRegionMatchBeginPositionMF_0073298) - 1) AS ?thisPositionOn28) . BIND(?thisPositionOn28 AS ?thisPositionOn29) . BIND(?this AS ?pfs1t109) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn28))) AS ?pfsb25) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn29))) AS ?pfse26) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn28, 1) = 'H')) . BIND(URI(CONCAT(STR(?this), '#MF_00732a24')) AS ?annotation24) . BIND(?this AS ?pfs23) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch114 faldo:location ?templateMotifSequenceMatchRegionP54512115 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP54512117 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP54512MF_00732110 . ?templateMotifSequenceMatchRegionP54512115 faldo:begin ?templateMotifSequenceMatchBeginP54512116 . ?templateMotifSequenceMatchBeginP54512116 faldo:position ?templateMotifSequenceMatchBeginPositionP54512111 ; faldo:reference isoform:P54512-1 . ?templateMotifSequenceProfileAlignmentOperationP54512117 edam:has_input signature:MF_00732 ; rdf:type edam:operation_0300 . ?targetMotifMatch118 faldo:location ?targetMotifMatchRegionMatch119 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00732121 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP54512MF_00732112 . ?targetMotifMatchRegionMatch119 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00732120 . ?targetMotifMatchRegionMatchBeginMF_00732120 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00732113 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_00732121 edam:has_input signature:MF_00732 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP54512MF_00732110, 1, (STRLEN(?templateMotifCigarP54512MF_00732110) - STRLEN(REPLACE(?templateMotifCigarP54512MF_00732110, CONCAT('^(?:-*[^-]){', STR(((99 - ?templateMotifSequenceMatchBeginPositionP54512111) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1122) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP54512MF_00732112, 1, (STRLEN(?targetMotifMatchCigarP54512MF_00732112) - STRLEN(REPLACE(?targetMotifMatchCigarP54512MF_00732112, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1122), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP54512MF_00732112, 1, (STRLEN(?targetMotifMatchCigarP54512MF_00732112) - STRLEN(REPLACE(?targetMotifMatchCigarP54512MF_00732112, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1122), '}'), '')))), '[^-]', ''))) AS ?step2123) . BIND(((?step2123 + ?targetMotifMatchRegionMatchBeginPositionMF_00732113) - 1) AS ?thisPositionOn35) . BIND(?thisPositionOn35 AS ?thisPositionOn36) . BIND(?this AS ?pfs1t124) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn35))) AS ?pfsb32) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn36))) AS ?pfse33) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn35, 1) = 'E')) . BIND(URI(CONCAT(STR(?this), '#MF_00732a31')) AS ?annotation31) . BIND(?this AS ?pfs30) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch129 faldo:location ?templateMotifSequenceMatchRegionP54512130 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP54512132 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP54512MF_00732125 . ?templateMotifSequenceMatchRegionP54512130 faldo:begin ?templateMotifSequenceMatchBeginP54512131 . ?templateMotifSequenceMatchBeginP54512131 faldo:position ?templateMotifSequenceMatchBeginPositionP54512126 ; faldo:reference isoform:P54512-1 . ?templateMotifSequenceProfileAlignmentOperationP54512132 edam:has_input signature:MF_00732 ; rdf:type edam:operation_0300 . ?targetMotifMatch133 faldo:location ?targetMotifMatchRegionMatch134 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00732136 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP54512MF_00732127 . ?targetMotifMatchRegionMatch134 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00732135 . ?targetMotifMatchRegionMatchBeginMF_00732135 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00732128 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_00732136 edam:has_input signature:MF_00732 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP54512MF_00732125, 1, (STRLEN(?templateMotifCigarP54512MF_00732125) - STRLEN(REPLACE(?templateMotifCigarP54512MF_00732125, CONCAT('^(?:-*[^-]){', STR(((99 - ?templateMotifSequenceMatchBeginPositionP54512126) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1137) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP54512MF_00732127, 1, (STRLEN(?targetMotifMatchCigarP54512MF_00732127) - STRLEN(REPLACE(?targetMotifMatchCigarP54512MF_00732127, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1137), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP54512MF_00732127, 1, (STRLEN(?targetMotifMatchCigarP54512MF_00732127) - STRLEN(REPLACE(?targetMotifMatchCigarP54512MF_00732127, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1137), '}'), '')))), '[^-]', ''))) AS ?step2138) . BIND(((?step2138 + ?targetMotifMatchRegionMatchBeginPositionMF_00732128) - 1) AS ?thisPositionOn42) . BIND(?thisPositionOn42 AS ?thisPositionOn43) . BIND(?this AS ?pfs1t139) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn42))) AS ?pfsb39) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn43))) AS ?pfse40) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn42, 1) = 'E')) . BIND(URI(CONCAT(STR(?this), '#MF_00732a38')) AS ?annotation38) . BIND(?this AS ?pfs37) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch144 faldo:location ?templateMotifSequenceMatchRegionP54512145 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP54512147 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP54512MF_00732140 . ?templateMotifSequenceMatchRegionP54512145 faldo:begin ?templateMotifSequenceMatchBeginP54512146 . ?templateMotifSequenceMatchBeginP54512146 faldo:position ?templateMotifSequenceMatchBeginPositionP54512141 ; faldo:reference isoform:P54512-1 . ?templateMotifSequenceProfileAlignmentOperationP54512147 edam:has_input signature:MF_00732 ; rdf:type edam:operation_0300 . ?targetMotifMatch148 faldo:location ?targetMotifMatchRegionMatch149 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00732151 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP54512MF_00732142 . ?targetMotifMatchRegionMatch149 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00732150 . ?targetMotifMatchRegionMatchBeginMF_00732150 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00732143 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_00732151 edam:has_input signature:MF_00732 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP54512MF_00732140, 1, (STRLEN(?templateMotifCigarP54512MF_00732140) - STRLEN(REPLACE(?templateMotifCigarP54512MF_00732140, CONCAT('^(?:-*[^-]){', STR(((102 - ?templateMotifSequenceMatchBeginPositionP54512141) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1152) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP54512MF_00732142, 1, (STRLEN(?targetMotifMatchCigarP54512MF_00732142) - STRLEN(REPLACE(?targetMotifMatchCigarP54512MF_00732142, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1152), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP54512MF_00732142, 1, (STRLEN(?targetMotifMatchCigarP54512MF_00732142) - STRLEN(REPLACE(?targetMotifMatchCigarP54512MF_00732142, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1152), '}'), '')))), '[^-]', ''))) AS ?step2153) . BIND(((?step2153 + ?targetMotifMatchRegionMatchBeginPositionMF_00732143) - 1) AS ?thisPositionOn49) . BIND(?thisPositionOn49 AS ?thisPositionOn50) . BIND(?this AS ?pfs1t154) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn49))) AS ?pfsb46) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn50))) AS ?pfse47) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn49, 1) = 'E')) . BIND(URI(CONCAT(STR(?this), '#MF_00732a45')) AS ?annotation45) . BIND(?this AS ?pfs44) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch159 faldo:location ?templateMotifSequenceMatchRegionP54512160 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP54512162 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP54512MF_00732155 . ?templateMotifSequenceMatchRegionP54512160 faldo:begin ?templateMotifSequenceMatchBeginP54512161 . ?templateMotifSequenceMatchBeginP54512161 faldo:position ?templateMotifSequenceMatchBeginPositionP54512156 ; faldo:reference isoform:P54512-1 . ?templateMotifSequenceProfileAlignmentOperationP54512162 edam:has_input signature:MF_00732 ; rdf:type edam:operation_0300 . ?targetMotifMatch163 faldo:location ?targetMotifMatchRegionMatch164 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00732166 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP54512MF_00732157 . ?targetMotifMatchRegionMatch164 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00732165 . ?targetMotifMatchRegionMatchBeginMF_00732165 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00732158 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_00732166 edam:has_input signature:MF_00732 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP54512MF_00732155, 1, (STRLEN(?templateMotifCigarP54512MF_00732155) - STRLEN(REPLACE(?templateMotifCigarP54512MF_00732155, CONCAT('^(?:-*[^-]){', STR(((102 - ?templateMotifSequenceMatchBeginPositionP54512156) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1167) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP54512MF_00732157, 1, (STRLEN(?targetMotifMatchCigarP54512MF_00732157) - STRLEN(REPLACE(?targetMotifMatchCigarP54512MF_00732157, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1167), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP54512MF_00732157, 1, (STRLEN(?targetMotifMatchCigarP54512MF_00732157) - STRLEN(REPLACE(?targetMotifMatchCigarP54512MF_00732157, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1167), '}'), '')))), '[^-]', ''))) AS ?step2168) . BIND(((?step2168 + ?targetMotifMatchRegionMatchBeginPositionMF_00732158) - 1) AS ?thisPositionOn56) . BIND(?thisPositionOn56 AS ?thisPositionOn57) . BIND(?this AS ?pfs1t169) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn56))) AS ?pfsb53) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn57))) AS ?pfse54) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn56, 1) = 'E')) . BIND(URI(CONCAT(STR(?this), '#MF_00732a52')) AS ?annotation52) . BIND(?this AS ?pfs51) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch174 faldo:location ?templateMotifSequenceMatchRegionP54512175 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP54512177 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP54512MF_00732170 . ?templateMotifSequenceMatchRegionP54512175 faldo:begin ?templateMotifSequenceMatchBeginP54512176 . ?templateMotifSequenceMatchBeginP54512176 faldo:position ?templateMotifSequenceMatchBeginPositionP54512171 ; faldo:reference isoform:P54512-1 . ?templateMotifSequenceProfileAlignmentOperationP54512177 edam:has_input signature:MF_00732 ; rdf:type edam:operation_0300 . ?targetMotifMatch178 faldo:location ?targetMotifMatchRegionMatch179 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00732181 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP54512MF_00732172 . ?targetMotifMatchRegionMatch179 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00732180 . ?targetMotifMatchRegionMatchBeginMF_00732180 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00732173 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_00732181 edam:has_input signature:MF_00732 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP54512MF_00732170, 1, (STRLEN(?templateMotifCigarP54512MF_00732170) - STRLEN(REPLACE(?templateMotifCigarP54512MF_00732170, CONCAT('^(?:-*[^-]){', STR(((103 - ?templateMotifSequenceMatchBeginPositionP54512171) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1182) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP54512MF_00732172, 1, (STRLEN(?targetMotifMatchCigarP54512MF_00732172) - STRLEN(REPLACE(?targetMotifMatchCigarP54512MF_00732172, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1182), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP54512MF_00732172, 1, (STRLEN(?targetMotifMatchCigarP54512MF_00732172) - STRLEN(REPLACE(?targetMotifMatchCigarP54512MF_00732172, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1182), '}'), '')))), '[^-]', ''))) AS ?step2183) . BIND(((?step2183 + ?targetMotifMatchRegionMatchBeginPositionMF_00732173) - 1) AS ?thisPositionOn63) . BIND(?thisPositionOn63 AS ?thisPositionOn64) . BIND(?this AS ?pfs1t184) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn63))) AS ?pfsb60) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn64))) AS ?pfse61) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn63, 1) = 'H')) . BIND(URI(CONCAT(STR(?this), '#MF_00732a59')) AS ?annotation59) . BIND(?this AS ?pfs58) . } }