CONSTRUCT { _:289245 up:source unirule:MF_00809 . _:289246 up:source unirule:MF_00809 . _:289247 up:source unirule:MF_00809 . _:289248 up:source unirule:MF_00809 . _:289249 up:source unirule:MF_00809 . _:289250 up:source unirule:MF_00809 . _:289251 up:source unirule:MF_00809 . _:289252 up:source unirule:MF_00809 . _:289253 up:source unirule:MF_00809 . _:289254 up:source unirule:MF_00809 . _:289255 up:source unirule:MF_00809 . _:289256 up:source unirule:MF_00809 . _:289257 up:source unirule:MF_00809 . _:289258 up:source unirule:MF_00809 . _:289259 up:source unirule:MF_00809 . _:289260 up:source unirule:MF_00809 . _:289261 up:source unirule:MF_00809 . _:289262 up:source unirule:MF_00809 . _:289263 up:source unirule:MF_00809 . _:289264 up:source unirule:MF_00809 . _:289265 up:source unirule:MF_00809 . _:289266 up:source unirule:MF_00809 . _:289267 up:source unirule:MF_00809 . _:289268 up:source unirule:MF_00809 . _:289269 up:source unirule:MF_00809 . _:289270 up:source unirule:MF_00809 . _:289271 up:source unirule:MF_00809 . _:289272 up:source unirule:MF_00809 . _:289273 up:source unirule:MF_00809 . _:289274 up:source unirule:MF_00809 . _:289275 up:source unirule:MF_00809 . _:289276 up:source unirule:MF_00809 . _:289277 up:source unirule:MF_00809 . _:289278 up:source unirule:MF_00809 . _:289279 up:source unirule:MF_00809 . ?this up:alternativeName ?name1 , ?name2 ; up:annotation ?annotation4 , ?annotation5 , ?annotation7 , ?annotation9 , ?annotation10 , ?annotation11 , ?annotation13 ; up:classifiedWith GO:0004340 , GO:0005737 , GO:0006096 , keyword:119 , keyword:313 , keyword:324 , keyword:418 , keyword:460 , keyword:479 , keyword:808 , keyword:963 ; up:recommendedName ?name0 . ?name0 up:ecName '2.7.1.-' , '2.7.1.147' ; up:fullName 'ADP-dependent glucose/glucosamine kinase' ; rdf:type up:Structured_Name . ?name1 up:fullName 'ADP-dependent glucokinase' ; up:shortName 'ADP-GK' , 'ADPGK' ; rdf:type up:Structured_Name . ?name2 up:fullName 'Glucosamine kinase' ; up:shortName 'GlcN kinase' ; rdf:type up:Structured_Name . ?gene3 skos:prefLabel 'glkA' . ?annotation4 a up:Function_Annotation ; rdfs:comment 'Catalyzes the ADP-dependent phosphorylation of D-glucose to D-glucose 6-phosphate and glucosamine to glucosamine 6-phosphate.' . ?annotation5 up:activity ?activity6 ; rdf:type up:Catalytic_Activity_Annotation . ?activity6 up:catalyticActivity <http://rdf.rhea-db.org/11460>; up:enzymeClass <http://purl.uniprot.org/enzyme/2.7.1.147>. ?annotation7 up:activity ?activity8 ; rdf:type up:Catalytic_Activity_Annotation . ?activity8 up:catalyticActivity <http://rdf.rhea-db.org/62084>. ?annotation9 up:cofactor chebi:18420 ; rdf:type up:Cofactor_Annotation ; rdfs:comment 'Binds 1 Mg(2+) ion per subunit.' . ?annotation10 a up:Pathway_Annotation ; rdfs:comment 'Carbohydrate degradation; glycolysis.' . ?annotation11 a up:Subcellular_Location_Annotation . ?annotation11li12 up:cellularComponent <http://purl.uniprot.org/locations/null>. ?annotation13 a up:Similarity_Annotation ; rdfs:comment 'Belongs to the ADP-dependent glucokinase family.' . ?pfs14 up:annotation ?annotation15 . ?annotation15 faldo:begin ?pfsb16 ; faldo:end ?pfse17 ; up:ligand ?ligand18 ; rdf:type up:Binding_Site_Annotation . ?pfsb16 faldo:position ?thisPositionOn19 ; rdf:type faldo:ExactPosition . ?pfse17 faldo:position ?thisPositionOn20 ; rdf:type faldo:ExactPosition . ?ligand18 rdfs:subClassOf chebi:456216 . ?pfs21 up:annotation ?annotation22 . ?annotation22 faldo:begin ?pfsb23 ; faldo:end ?pfse24 ; up:ligand ?ligand25 ; rdf:type up:Binding_Site_Annotation . ?pfsb23 faldo:position ?thisPositionOn26 ; rdf:type faldo:ExactPosition . ?pfse24 faldo:position ?thisPositionOn27 ; rdf:type faldo:ExactPosition . ?ligand25 rdfs:subClassOf chebi:4167 . ?pfs28 up:annotation ?annotation29 . ?annotation29 faldo:begin ?pfsb30 ; faldo:end ?pfse31 ; rdf:type up:Active_Site_Annotation ; rdfs:comment 'Proton acceptor' . ?pfsb30 faldo:position ?thisPositionOn32 ; rdf:type faldo:ExactPosition . ?pfse31 faldo:position ?thisPositionOn33 ; rdf:type faldo:ExactPosition . ?pfs34 up:annotation ?annotation35 . ?annotation35 faldo:begin ?pfsb36 ; faldo:end ?pfse37 ; up:ligand ?ligand38 ; rdf:type up:Binding_Site_Annotation . ?pfsb36 faldo:position ?thisPositionOn39 ; rdf:type faldo:ExactPosition . ?pfse37 faldo:position ?thisPositionOn40 ; rdf:type faldo:ExactPosition . ?ligand38 rdfs:subClassOf chebi:18420 . ?pfs41 up:annotation ?annotation42 . ?annotation42 faldo:begin ?pfsb43 ; faldo:end ?pfse44 ; up:ligand ?ligand45 ; rdf:type up:Binding_Site_Annotation . ?pfsb43 faldo:position ?thisPositionOn46 ; rdf:type faldo:ExactPosition . ?pfse44 faldo:position ?thisPositionOn47 ; rdf:type faldo:ExactPosition . ?ligand45 rdfs:subClassOf chebi:18420 . ?pfs48 up:annotation ?annotation49 . ?annotation49 faldo:begin ?pfsb50 ; faldo:end ?pfse51 ; up:ligand ?ligand52 ; rdf:type up:Binding_Site_Annotation . ?pfsb50 faldo:position ?thisPositionOn53 ; rdf:type faldo:ExactPosition . ?pfse51 faldo:position ?thisPositionOn54 ; rdf:type faldo:ExactPosition . ?ligand52 rdfs:subClassOf chebi:18420 . ?pfs55 up:annotation ?annotation56 . ?annotation56 faldo:begin ?pfsb57 ; faldo:end ?pfse58 ; up:ligand ?ligand59 ; rdf:type up:Binding_Site_Annotation . ?pfsb57 faldo:position ?thisPositionOn60 ; rdf:type faldo:ExactPosition . ?pfse58 faldo:position ?thisPositionOn61 ; rdf:type faldo:ExactPosition . ?ligand59 rdfs:subClassOf chebi:4167 . ?pfs62 up:annotation ?annotation63 . ?annotation63 faldo:begin ?pfsb64 ; faldo:end ?pfse65 ; up:ligand ?ligand66 ; rdf:type up:Binding_Site_Annotation . ?pfsb64 faldo:position ?thisPositionOn67 ; rdf:type faldo:ExactPosition . ?pfse65 faldo:position ?thisPositionOn68 ; rdf:type faldo:ExactPosition . ?ligand66 rdfs:subClassOf chebi:4167 . ?pfs69 up:annotation ?annotation70 . ?annotation70 faldo:begin ?pfsb71 ; faldo:end ?pfse72 ; up:ligand ?ligand73 ; rdf:type up:Binding_Site_Annotation . ?pfsb71 faldo:position ?thisPositionOn74 ; rdf:type faldo:ExactPosition . ?pfse72 faldo:position ?thisPositionOn75 ; rdf:type faldo:ExactPosition . ?ligand73 rdfs:subClassOf chebi:4167 . ?pfs76 up:annotation ?annotation77 . ?annotation77 faldo:begin ?pfsb78 ; faldo:end ?pfse79 ; up:ligand ?ligand80 ; rdf:type up:Binding_Site_Annotation . ?pfsb78 faldo:position ?thisPositionOn81 ; rdf:type faldo:ExactPosition . ?pfse79 faldo:position ?thisPositionOn82 ; rdf:type faldo:ExactPosition . ?ligand80 rdfs:subClassOf chebi:456216 . ?pfs83 up:annotation ?annotation84 . ?annotation84 faldo:begin ?pfsb85 ; faldo:end ?pfse86 ; up:ligand ?ligand87 ; rdf:type up:Binding_Site_Annotation . ?pfsb85 faldo:position ?thisPositionOn88 ; rdf:type faldo:ExactPosition . ?pfse86 faldo:position ?thisPositionOn89 ; rdf:type faldo:ExactPosition . ?ligand87 rdfs:subClassOf chebi:456216 . ?pfs90 up:annotation ?annotation91 . ?annotation91 faldo:begin ?pfsb92 ; faldo:end ?pfse93 ; up:ligand ?ligand94 ; rdf:type up:Binding_Site_Annotation . ?pfsb92 faldo:position ?thisPositionOn95 ; rdf:type faldo:ExactPosition . ?pfse93 faldo:position ?thisPositionOn96 ; rdf:type faldo:ExactPosition . ?ligand94 rdfs:subClassOf chebi:456216 . ?pfs97 up:annotation ?annotation98 . ?annotation98 faldo:begin ?pfsb99 ; faldo:end ?pfse100 ; up:ligand ?ligand101 ; rdf:type up:Binding_Site_Annotation . ?pfsb99 faldo:position ?thisPositionOn102 ; rdf:type faldo:ExactPosition . ?pfse100 faldo:position ?thisPositionOn103 ; rdf:type faldo:ExactPosition . ?ligand101 rdfs:subClassOf chebi:4167 . _:289280 a rdf:Statement ; up:attribution _:289245 ; rdf:subject ?this ; rdf:predicate up:recommendedName ; rdf:object ?name0 . _:289281 a rdf:Statement ; up:attribution _:289246 ; rdf:subject ?this ; rdf:predicate up:alternativeName ; rdf:object ?name1 . _:289282 a rdf:Statement ; up:attribution _:289247 ; rdf:subject ?this ; rdf:predicate up:alternativeName ; rdf:object ?name2 . _:289283 a rdf:Statement ; up:attribution _:289248 ; rdf:subject ?gene3 ; rdf:predicate up:encodedBy ; rdf:object ?gene3 . _:289284 a rdf:Statement ; up:attribution _:289249 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation4 . _:289285 a rdf:Statement ; up:attribution _:289250 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation5 . _:289286 a rdf:Statement ; up:attribution _:289251 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation7 . _:289287 a rdf:Statement ; up:attribution _:289252 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation9 . _:289288 a rdf:Statement ; up:attribution _:289253 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation10 . _:289289 a rdf:Statement ; up:attribution _:289254 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation11 . _:289290 a rdf:Statement ; up:attribution _:289255 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation13 . _:289291 a rdf:Statement ; up:attribution _:289256 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:119 . _:289292 a rdf:Statement ; up:attribution _:289257 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:963 . _:289293 a rdf:Statement ; up:attribution _:289258 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:313 . _:289294 a rdf:Statement ; up:attribution _:289259 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:324 . _:289295 a rdf:Statement ; up:attribution _:289260 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:418 . _:289296 a rdf:Statement ; up:attribution _:289261 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:460 . _:289297 a rdf:Statement ; up:attribution _:289262 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:479 . _:289298 a rdf:Statement ; up:attribution _:289263 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:808 . _:289299 a rdf:Statement ; up:attribution _:289264 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object GO:0004340 . _:289300 a rdf:Statement ; up:attribution _:289265 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object GO:0006096 . _:289301 a rdf:Statement ; up:attribution _:289266 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object GO:0005737 . _:289302 a rdf:Statement ; up:source unirule:MF_00809 ; rdf:subject ?pfs14 ; rdf:predicate up:annotation ; rdf:object ?annotation15 . _:289303 a rdf:Statement ; up:attribution _:289267 ; rdf:subject ?pfs14 ; rdf:predicate up:annotation ; rdf:object ?annotation15 . _:289304 a rdf:Statement ; up:source unirule:MF_00809 ; rdf:subject ?pfs21 ; rdf:predicate up:annotation ; rdf:object ?annotation22 . _:289305 a rdf:Statement ; up:attribution _:289268 ; rdf:subject ?pfs21 ; rdf:predicate up:annotation ; rdf:object ?annotation22 . _:289306 a rdf:Statement ; up:source unirule:MF_00809 ; rdf:subject ?pfs28 ; rdf:predicate up:annotation ; rdf:object ?annotation29 . _:289307 a rdf:Statement ; up:attribution _:289269 ; rdf:subject ?pfs28 ; rdf:predicate up:annotation ; rdf:object ?annotation29 . _:289308 a rdf:Statement ; up:source unirule:MF_00809 ; rdf:subject ?pfs34 ; rdf:predicate up:annotation ; rdf:object ?annotation35 . _:289309 a rdf:Statement ; up:attribution _:289270 ; rdf:subject ?pfs34 ; rdf:predicate up:annotation ; rdf:object ?annotation35 . _:289310 a rdf:Statement ; up:source unirule:MF_00809 ; rdf:subject ?pfs41 ; rdf:predicate up:annotation ; rdf:object ?annotation42 . _:289311 a rdf:Statement ; up:attribution _:289271 ; rdf:subject ?pfs41 ; rdf:predicate up:annotation ; rdf:object ?annotation42 . _:289312 a rdf:Statement ; up:source unirule:MF_00809 ; rdf:subject ?pfs48 ; rdf:predicate up:annotation ; rdf:object ?annotation49 . _:289313 a rdf:Statement ; up:attribution _:289272 ; rdf:subject ?pfs48 ; rdf:predicate up:annotation ; rdf:object ?annotation49 . _:289314 a rdf:Statement ; up:source unirule:MF_00809 ; rdf:subject ?pfs55 ; rdf:predicate up:annotation ; rdf:object ?annotation56 . _:289315 a rdf:Statement ; up:attribution _:289273 ; rdf:subject ?pfs55 ; rdf:predicate up:annotation ; rdf:object ?annotation56 . _:289316 a rdf:Statement ; up:source unirule:MF_00809 ; rdf:subject ?pfs62 ; rdf:predicate up:annotation ; rdf:object ?annotation63 . _:289317 a rdf:Statement ; up:attribution _:289274 ; rdf:subject ?pfs62 ; rdf:predicate up:annotation ; rdf:object ?annotation63 . _:289318 a rdf:Statement ; up:source unirule:MF_00809 ; rdf:subject ?pfs69 ; rdf:predicate up:annotation ; rdf:object ?annotation70 . _:289319 a rdf:Statement ; up:attribution _:289275 ; rdf:subject ?pfs69 ; rdf:predicate up:annotation ; rdf:object ?annotation70 . _:289320 a rdf:Statement ; up:source unirule:MF_00809 ; rdf:subject ?pfs76 ; rdf:predicate up:annotation ; rdf:object ?annotation77 . _:289321 a rdf:Statement ; up:attribution _:289276 ; rdf:subject ?pfs76 ; rdf:predicate up:annotation ; rdf:object ?annotation77 . _:289322 a rdf:Statement ; up:source unirule:MF_00809 ; rdf:subject ?pfs83 ; rdf:predicate up:annotation ; rdf:object ?annotation84 . _:289323 a rdf:Statement ; up:attribution _:289277 ; rdf:subject ?pfs83 ; rdf:predicate up:annotation ; rdf:object ?annotation84 . _:289324 a rdf:Statement ; up:source unirule:MF_00809 ; rdf:subject ?pfs90 ; rdf:predicate up:annotation ; rdf:object ?annotation91 . _:289325 a rdf:Statement ; up:attribution _:289278 ; rdf:subject ?pfs90 ; rdf:predicate up:annotation ; rdf:object ?annotation91 . _:289326 a rdf:Statement ; up:source unirule:MF_00809 ; rdf:subject ?pfs97 ; rdf:predicate up:annotation ; rdf:object ?annotation98 . _:289327 a rdf:Statement ; up:attribution _:289279 ; rdf:subject ?pfs97 ; rdf:predicate up:annotation ; rdf:object ?annotation98 . } WHERE { #baseURI: http://purl.uniprot.org/unirule/MF_00809 #Rule MF_00809 Created by:? on:2005-04-06 Modified by:Edouard de Castro on:2024-09-03 ?this up:organism ?thisOrganism ; rdfs:seeAlso signature:MF_00809 . ?thisOrganism rdfs:subClassOf+ taxon:2157 . BIND(URI(CONCAT(STR(?this), '#MF_00809a0')) AS ?name0) . BIND(URI(CONCAT(STR(?this), '#MF_00809a1')) AS ?name1) . BIND(URI(CONCAT(STR(?this), '#MF_00809a2')) AS ?name2) . BIND(URI(CONCAT(STR(?this), '#MF_00809a4')) AS ?annotation4) . BIND(URI(CONCAT(STR(?this), '#MF_00809a5')) AS ?annotation5) . BIND(URI(CONCAT(STR(?this), '#MF_00809a7')) AS ?annotation7) . BIND(URI(CONCAT(STR(?this), '#MF_00809a9')) AS ?annotation9) . BIND(URI(CONCAT(STR(?this), '#MF_00809a10')) AS ?annotation10) . BIND(URI(CONCAT(STR(?this), '#MF_00809a11')) AS ?annotation11) . BIND(URI(CONCAT(STR(?this), '#MF_00809a13')) AS ?annotation13) . OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch108 faldo:location ?templateMotifSequenceMatchRegionQ9V2Z6109 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ9V2Z6111 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarQ9V2Z6MF_00809104 . ?templateMotifSequenceMatchRegionQ9V2Z6109 faldo:begin ?templateMotifSequenceMatchBeginQ9V2Z6110 . ?templateMotifSequenceMatchBeginQ9V2Z6110 faldo:position ?templateMotifSequenceMatchBeginPositionQ9V2Z6105 ; faldo:reference isoform:Q9V2Z6-1 . ?templateMotifSequenceProfileAlignmentOperationQ9V2Z6111 edam:has_input signature:MF_00809 ; rdf:type edam:operation_0300 . ?targetMotifMatch112 faldo:location ?targetMotifMatchRegionMatch113 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00809115 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarQ9V2Z6MF_00809106 . ?targetMotifMatchRegionMatch113 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00809114 . ?targetMotifMatchRegionMatchBeginMF_00809114 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00809107 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_00809115 edam:has_input signature:MF_00809 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ9V2Z6MF_00809104, 1, (STRLEN(?templateMotifCigarQ9V2Z6MF_00809104) - STRLEN(REPLACE(?templateMotifCigarQ9V2Z6MF_00809104, CONCAT('^(?:-*[^-]){', STR(((342 - ?templateMotifSequenceMatchBeginPositionQ9V2Z6105) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1116) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ9V2Z6MF_00809106, 1, (STRLEN(?targetMotifMatchCigarQ9V2Z6MF_00809106) - STRLEN(REPLACE(?targetMotifMatchCigarQ9V2Z6MF_00809106, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1116), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ9V2Z6MF_00809106, 1, (STRLEN(?targetMotifMatchCigarQ9V2Z6MF_00809106) - STRLEN(REPLACE(?targetMotifMatchCigarQ9V2Z6MF_00809106, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1116), '}'), '')))), '[^-]', ''))) AS ?step2117) . BIND(((?step2117 + ?targetMotifMatchRegionMatchBeginPositionMF_00809107) - 1) AS ?thisPositionOn19) . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ9V2Z6MF_00809104, 1, (STRLEN(?templateMotifCigarQ9V2Z6MF_00809104) - STRLEN(REPLACE(?templateMotifCigarQ9V2Z6MF_00809104, CONCAT('^(?:-*[^-]){', STR(((343 - ?templateMotifSequenceMatchBeginPositionQ9V2Z6105) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1118) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ9V2Z6MF_00809106, 1, (STRLEN(?targetMotifMatchCigarQ9V2Z6MF_00809106) - STRLEN(REPLACE(?targetMotifMatchCigarQ9V2Z6MF_00809106, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1118), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ9V2Z6MF_00809106, 1, (STRLEN(?targetMotifMatchCigarQ9V2Z6MF_00809106) - STRLEN(REPLACE(?targetMotifMatchCigarQ9V2Z6MF_00809106, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1118), '}'), '')))), '[^-]', ''))) AS ?step2119) . BIND(((?step2119 + ?targetMotifMatchRegionMatchBeginPositionMF_00809107) - 1) AS ?thisPositionOn20) . BIND(?this AS ?pfs1t120) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn19))) AS ?pfsb16) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn20))) AS ?pfse17) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn19, (?thisPositionOn20 - ?thisPositionOn19)) = 'HT')) . BIND(URI(CONCAT(STR(?this), '#MF_00809a15')) AS ?annotation15) . BIND(?this AS ?pfs14) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch125 faldo:location ?templateMotifSequenceMatchRegionQ9V2Z6126 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ9V2Z6128 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarQ9V2Z6MF_00809121 . ?templateMotifSequenceMatchRegionQ9V2Z6126 faldo:begin ?templateMotifSequenceMatchBeginQ9V2Z6127 . ?templateMotifSequenceMatchBeginQ9V2Z6127 faldo:position ?templateMotifSequenceMatchBeginPositionQ9V2Z6122 ; faldo:reference isoform:Q9V2Z6-1 . ?templateMotifSequenceProfileAlignmentOperationQ9V2Z6128 edam:has_input signature:MF_00809 ; rdf:type edam:operation_0300 . ?targetMotifMatch129 faldo:location ?targetMotifMatchRegionMatch130 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00809132 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarQ9V2Z6MF_00809123 . ?targetMotifMatchRegionMatch130 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00809131 . ?targetMotifMatchRegionMatchBeginMF_00809131 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00809124 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_00809132 edam:has_input signature:MF_00809 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ9V2Z6MF_00809121, 1, (STRLEN(?templateMotifCigarQ9V2Z6MF_00809121) - STRLEN(REPLACE(?templateMotifCigarQ9V2Z6MF_00809121, CONCAT('^(?:-*[^-]){', STR(((112 - ?templateMotifSequenceMatchBeginPositionQ9V2Z6122) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1133) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ9V2Z6MF_00809123, 1, (STRLEN(?targetMotifMatchCigarQ9V2Z6MF_00809123) - STRLEN(REPLACE(?targetMotifMatchCigarQ9V2Z6MF_00809123, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1133), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ9V2Z6MF_00809123, 1, (STRLEN(?targetMotifMatchCigarQ9V2Z6MF_00809123) - STRLEN(REPLACE(?targetMotifMatchCigarQ9V2Z6MF_00809123, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1133), '}'), '')))), '[^-]', ''))) AS ?step2134) . BIND(((?step2134 + ?targetMotifMatchRegionMatchBeginPositionMF_00809124) - 1) AS ?thisPositionOn26) . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ9V2Z6MF_00809121, 1, (STRLEN(?templateMotifCigarQ9V2Z6MF_00809121) - STRLEN(REPLACE(?templateMotifCigarQ9V2Z6MF_00809121, CONCAT('^(?:-*[^-]){', STR(((113 - ?templateMotifSequenceMatchBeginPositionQ9V2Z6122) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1135) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ9V2Z6MF_00809123, 1, (STRLEN(?targetMotifMatchCigarQ9V2Z6MF_00809123) - STRLEN(REPLACE(?targetMotifMatchCigarQ9V2Z6MF_00809123, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1135), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ9V2Z6MF_00809123, 1, (STRLEN(?targetMotifMatchCigarQ9V2Z6MF_00809123) - STRLEN(REPLACE(?targetMotifMatchCigarQ9V2Z6MF_00809123, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1135), '}'), '')))), '[^-]', ''))) AS ?step2136) . BIND(((?step2136 + ?targetMotifMatchRegionMatchBeginPositionMF_00809124) - 1) AS ?thisPositionOn27) . BIND(?this AS ?pfs1t137) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn26))) AS ?pfsb23) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn27))) AS ?pfse24) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn26, (?thisPositionOn27 - ?thisPositionOn26)) = 'GQ')) . BIND(URI(CONCAT(STR(?this), '#MF_00809a22')) AS ?annotation22) . BIND(?this AS ?pfs21) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch142 faldo:location ?templateMotifSequenceMatchRegionQ9V2Z6143 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ9V2Z6145 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarQ9V2Z6MF_00809138 . ?templateMotifSequenceMatchRegionQ9V2Z6143 faldo:begin ?templateMotifSequenceMatchBeginQ9V2Z6144 . ?templateMotifSequenceMatchBeginQ9V2Z6144 faldo:position ?templateMotifSequenceMatchBeginPositionQ9V2Z6139 ; faldo:reference isoform:Q9V2Z6-1 . ?templateMotifSequenceProfileAlignmentOperationQ9V2Z6145 edam:has_input signature:MF_00809 ; rdf:type edam:operation_0300 . ?targetMotifMatch146 faldo:location ?targetMotifMatchRegionMatch147 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00809149 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarQ9V2Z6MF_00809140 . ?targetMotifMatchRegionMatch147 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00809148 . ?targetMotifMatchRegionMatchBeginMF_00809148 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00809141 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_00809149 edam:has_input signature:MF_00809 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ9V2Z6MF_00809138, 1, (STRLEN(?templateMotifCigarQ9V2Z6MF_00809138) - STRLEN(REPLACE(?templateMotifCigarQ9V2Z6MF_00809138, CONCAT('^(?:-*[^-]){', STR(((440 - ?templateMotifSequenceMatchBeginPositionQ9V2Z6139) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1150) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ9V2Z6MF_00809140, 1, (STRLEN(?targetMotifMatchCigarQ9V2Z6MF_00809140) - STRLEN(REPLACE(?targetMotifMatchCigarQ9V2Z6MF_00809140, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1150), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ9V2Z6MF_00809140, 1, (STRLEN(?targetMotifMatchCigarQ9V2Z6MF_00809140) - STRLEN(REPLACE(?targetMotifMatchCigarQ9V2Z6MF_00809140, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1150), '}'), '')))), '[^-]', ''))) AS ?step2151) . BIND(((?step2151 + ?targetMotifMatchRegionMatchBeginPositionMF_00809141) - 1) AS ?thisPositionOn32) . BIND(?thisPositionOn32 AS ?thisPositionOn33) . BIND(?this AS ?pfs1t152) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn32))) AS ?pfsb30) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn33))) AS ?pfse31) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn32, 1) = 'D')) . BIND(URI(CONCAT(STR(?this), '#MF_00809a29')) AS ?annotation29) . BIND(?this AS ?pfs28) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch157 faldo:location ?templateMotifSequenceMatchRegionQ9V2Z6158 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ9V2Z6160 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarQ9V2Z6MF_00809153 . ?templateMotifSequenceMatchRegionQ9V2Z6158 faldo:begin ?templateMotifSequenceMatchBeginQ9V2Z6159 . ?templateMotifSequenceMatchBeginQ9V2Z6159 faldo:position ?templateMotifSequenceMatchBeginPositionQ9V2Z6154 ; faldo:reference isoform:Q9V2Z6-1 . ?templateMotifSequenceProfileAlignmentOperationQ9V2Z6160 edam:has_input signature:MF_00809 ; rdf:type edam:operation_0300 . ?targetMotifMatch161 faldo:location ?targetMotifMatchRegionMatch162 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00809164 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarQ9V2Z6MF_00809155 . ?targetMotifMatchRegionMatch162 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00809163 . ?targetMotifMatchRegionMatchBeginMF_00809163 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00809156 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_00809164 edam:has_input signature:MF_00809 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ9V2Z6MF_00809153, 1, (STRLEN(?templateMotifCigarQ9V2Z6MF_00809153) - STRLEN(REPLACE(?templateMotifCigarQ9V2Z6MF_00809153, CONCAT('^(?:-*[^-]){', STR(((266 - ?templateMotifSequenceMatchBeginPositionQ9V2Z6154) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1165) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ9V2Z6MF_00809155, 1, (STRLEN(?targetMotifMatchCigarQ9V2Z6MF_00809155) - STRLEN(REPLACE(?targetMotifMatchCigarQ9V2Z6MF_00809155, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1165), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ9V2Z6MF_00809155, 1, (STRLEN(?targetMotifMatchCigarQ9V2Z6MF_00809155) - STRLEN(REPLACE(?targetMotifMatchCigarQ9V2Z6MF_00809155, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1165), '}'), '')))), '[^-]', ''))) AS ?step2166) . BIND(((?step2166 + ?targetMotifMatchRegionMatchBeginPositionMF_00809156) - 1) AS ?thisPositionOn39) . BIND(?thisPositionOn39 AS ?thisPositionOn40) . BIND(?this AS ?pfs1t167) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn39))) AS ?pfsb36) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn40))) AS ?pfse37) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn39, 1) = 'E')) . BIND(URI(CONCAT(STR(?this), '#MF_00809a35')) AS ?annotation35) . BIND(?this AS ?pfs34) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch172 faldo:location ?templateMotifSequenceMatchRegionQ9V2Z6173 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ9V2Z6175 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarQ9V2Z6MF_00809168 . ?templateMotifSequenceMatchRegionQ9V2Z6173 faldo:begin ?templateMotifSequenceMatchBeginQ9V2Z6174 . ?templateMotifSequenceMatchBeginQ9V2Z6174 faldo:position ?templateMotifSequenceMatchBeginPositionQ9V2Z6169 ; faldo:reference isoform:Q9V2Z6-1 . ?templateMotifSequenceProfileAlignmentOperationQ9V2Z6175 edam:has_input signature:MF_00809 ; rdf:type edam:operation_0300 . ?targetMotifMatch176 faldo:location ?targetMotifMatchRegionMatch177 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00809179 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarQ9V2Z6MF_00809170 . ?targetMotifMatchRegionMatch177 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00809178 . ?targetMotifMatchRegionMatchBeginMF_00809178 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00809171 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_00809179 edam:has_input signature:MF_00809 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ9V2Z6MF_00809168, 1, (STRLEN(?templateMotifCigarQ9V2Z6MF_00809168) - STRLEN(REPLACE(?templateMotifCigarQ9V2Z6MF_00809168, CONCAT('^(?:-*[^-]){', STR(((295 - ?templateMotifSequenceMatchBeginPositionQ9V2Z6169) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1180) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ9V2Z6MF_00809170, 1, (STRLEN(?targetMotifMatchCigarQ9V2Z6MF_00809170) - STRLEN(REPLACE(?targetMotifMatchCigarQ9V2Z6MF_00809170, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1180), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ9V2Z6MF_00809170, 1, (STRLEN(?targetMotifMatchCigarQ9V2Z6MF_00809170) - STRLEN(REPLACE(?targetMotifMatchCigarQ9V2Z6MF_00809170, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1180), '}'), '')))), '[^-]', ''))) AS ?step2181) . BIND(((?step2181 + ?targetMotifMatchRegionMatchBeginPositionMF_00809171) - 1) AS ?thisPositionOn46) . BIND(?thisPositionOn46 AS ?thisPositionOn47) . BIND(?this AS ?pfs1t182) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn46))) AS ?pfsb43) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn47))) AS ?pfse44) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn46, 1) = 'E')) . BIND(URI(CONCAT(STR(?this), '#MF_00809a42')) AS ?annotation42) . BIND(?this AS ?pfs41) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch187 faldo:location ?templateMotifSequenceMatchRegionQ9V2Z6188 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ9V2Z6190 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarQ9V2Z6MF_00809183 . ?templateMotifSequenceMatchRegionQ9V2Z6188 faldo:begin ?templateMotifSequenceMatchBeginQ9V2Z6189 . ?templateMotifSequenceMatchBeginQ9V2Z6189 faldo:position ?templateMotifSequenceMatchBeginPositionQ9V2Z6184 ; faldo:reference isoform:Q9V2Z6-1 . ?templateMotifSequenceProfileAlignmentOperationQ9V2Z6190 edam:has_input signature:MF_00809 ; rdf:type edam:operation_0300 . ?targetMotifMatch191 faldo:location ?targetMotifMatchRegionMatch192 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00809194 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarQ9V2Z6MF_00809185 . ?targetMotifMatchRegionMatch192 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00809193 . ?targetMotifMatchRegionMatchBeginMF_00809193 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00809186 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_00809194 edam:has_input signature:MF_00809 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ9V2Z6MF_00809183, 1, (STRLEN(?templateMotifCigarQ9V2Z6MF_00809183) - STRLEN(REPLACE(?templateMotifCigarQ9V2Z6MF_00809183, CONCAT('^(?:-*[^-]){', STR(((440 - ?templateMotifSequenceMatchBeginPositionQ9V2Z6184) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1195) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ9V2Z6MF_00809185, 1, (STRLEN(?targetMotifMatchCigarQ9V2Z6MF_00809185) - STRLEN(REPLACE(?targetMotifMatchCigarQ9V2Z6MF_00809185, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1195), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ9V2Z6MF_00809185, 1, (STRLEN(?targetMotifMatchCigarQ9V2Z6MF_00809185) - STRLEN(REPLACE(?targetMotifMatchCigarQ9V2Z6MF_00809185, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1195), '}'), '')))), '[^-]', ''))) AS ?step2196) . BIND(((?step2196 + ?targetMotifMatchRegionMatchBeginPositionMF_00809186) - 1) AS ?thisPositionOn53) . BIND(?thisPositionOn53 AS ?thisPositionOn54) . BIND(?this AS ?pfs1t197) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn53))) AS ?pfsb50) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn54))) AS ?pfse51) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn53, 1) = 'D')) . BIND(URI(CONCAT(STR(?this), '#MF_00809a49')) AS ?annotation49) . BIND(?this AS ?pfs48) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch202 faldo:location ?templateMotifSequenceMatchRegionQ9V2Z6203 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ9V2Z6205 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarQ9V2Z6MF_00809198 . ?templateMotifSequenceMatchRegionQ9V2Z6203 faldo:begin ?templateMotifSequenceMatchBeginQ9V2Z6204 . ?templateMotifSequenceMatchBeginQ9V2Z6204 faldo:position ?templateMotifSequenceMatchBeginPositionQ9V2Z6199 ; faldo:reference isoform:Q9V2Z6-1 . ?templateMotifSequenceProfileAlignmentOperationQ9V2Z6205 edam:has_input signature:MF_00809 ; rdf:type edam:operation_0300 . ?targetMotifMatch206 faldo:location ?targetMotifMatchRegionMatch207 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00809209 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarQ9V2Z6MF_00809200 . ?targetMotifMatchRegionMatch207 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00809208 . ?targetMotifMatchRegionMatchBeginMF_00809208 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00809201 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_00809209 edam:has_input signature:MF_00809 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ9V2Z6MF_00809198, 1, (STRLEN(?templateMotifCigarQ9V2Z6MF_00809198) - STRLEN(REPLACE(?templateMotifCigarQ9V2Z6MF_00809198, CONCAT('^(?:-*[^-]){', STR(((34 - ?templateMotifSequenceMatchBeginPositionQ9V2Z6199) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1210) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ9V2Z6MF_00809200, 1, (STRLEN(?targetMotifMatchCigarQ9V2Z6MF_00809200) - STRLEN(REPLACE(?targetMotifMatchCigarQ9V2Z6MF_00809200, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1210), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ9V2Z6MF_00809200, 1, (STRLEN(?targetMotifMatchCigarQ9V2Z6MF_00809200) - STRLEN(REPLACE(?targetMotifMatchCigarQ9V2Z6MF_00809200, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1210), '}'), '')))), '[^-]', ''))) AS ?step2211) . BIND(((?step2211 + ?targetMotifMatchRegionMatchBeginPositionMF_00809201) - 1) AS ?thisPositionOn60) . BIND(?thisPositionOn60 AS ?thisPositionOn61) . BIND(?this AS ?pfs1t212) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn60))) AS ?pfsb57) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn61))) AS ?pfse58) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn60, 1) = 'D')) . BIND(URI(CONCAT(STR(?this), '#MF_00809a56')) AS ?annotation56) . BIND(?this AS ?pfs55) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch217 faldo:location ?templateMotifSequenceMatchRegionQ9V2Z6218 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ9V2Z6220 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarQ9V2Z6MF_00809213 . ?templateMotifSequenceMatchRegionQ9V2Z6218 faldo:begin ?templateMotifSequenceMatchBeginQ9V2Z6219 . ?templateMotifSequenceMatchBeginQ9V2Z6219 faldo:position ?templateMotifSequenceMatchBeginPositionQ9V2Z6214 ; faldo:reference isoform:Q9V2Z6-1 . ?templateMotifSequenceProfileAlignmentOperationQ9V2Z6220 edam:has_input signature:MF_00809 ; rdf:type edam:operation_0300 . ?targetMotifMatch221 faldo:location ?targetMotifMatchRegionMatch222 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00809224 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarQ9V2Z6MF_00809215 . ?targetMotifMatchRegionMatch222 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00809223 . ?targetMotifMatchRegionMatchBeginMF_00809223 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00809216 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_00809224 edam:has_input signature:MF_00809 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ9V2Z6MF_00809213, 1, (STRLEN(?templateMotifCigarQ9V2Z6MF_00809213) - STRLEN(REPLACE(?templateMotifCigarQ9V2Z6MF_00809213, CONCAT('^(?:-*[^-]){', STR(((88 - ?templateMotifSequenceMatchBeginPositionQ9V2Z6214) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1225) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ9V2Z6MF_00809215, 1, (STRLEN(?targetMotifMatchCigarQ9V2Z6MF_00809215) - STRLEN(REPLACE(?targetMotifMatchCigarQ9V2Z6MF_00809215, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1225), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ9V2Z6MF_00809215, 1, (STRLEN(?targetMotifMatchCigarQ9V2Z6MF_00809215) - STRLEN(REPLACE(?targetMotifMatchCigarQ9V2Z6MF_00809215, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1225), '}'), '')))), '[^-]', ''))) AS ?step2226) . BIND(((?step2226 + ?targetMotifMatchRegionMatchBeginPositionMF_00809216) - 1) AS ?thisPositionOn67) . BIND(?thisPositionOn67 AS ?thisPositionOn68) . BIND(?this AS ?pfs1t227) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn67))) AS ?pfsb64) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn68))) AS ?pfse65) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn67, 1) = 'E')) . BIND(URI(CONCAT(STR(?this), '#MF_00809a63')) AS ?annotation63) . BIND(?this AS ?pfs62) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch232 faldo:location ?templateMotifSequenceMatchRegionQ9V2Z6233 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ9V2Z6235 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarQ9V2Z6MF_00809228 . ?templateMotifSequenceMatchRegionQ9V2Z6233 faldo:begin ?templateMotifSequenceMatchBeginQ9V2Z6234 . ?templateMotifSequenceMatchBeginQ9V2Z6234 faldo:position ?templateMotifSequenceMatchBeginPositionQ9V2Z6229 ; faldo:reference isoform:Q9V2Z6-1 . ?templateMotifSequenceProfileAlignmentOperationQ9V2Z6235 edam:has_input signature:MF_00809 ; rdf:type edam:operation_0300 . ?targetMotifMatch236 faldo:location ?targetMotifMatchRegionMatch237 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00809239 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarQ9V2Z6MF_00809230 . ?targetMotifMatchRegionMatch237 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00809238 . ?targetMotifMatchRegionMatchBeginMF_00809238 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00809231 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_00809239 edam:has_input signature:MF_00809 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ9V2Z6MF_00809228, 1, (STRLEN(?templateMotifCigarQ9V2Z6MF_00809228) - STRLEN(REPLACE(?templateMotifCigarQ9V2Z6MF_00809228, CONCAT('^(?:-*[^-]){', STR(((176 - ?templateMotifSequenceMatchBeginPositionQ9V2Z6229) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1240) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ9V2Z6MF_00809230, 1, (STRLEN(?targetMotifMatchCigarQ9V2Z6MF_00809230) - STRLEN(REPLACE(?targetMotifMatchCigarQ9V2Z6MF_00809230, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1240), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ9V2Z6MF_00809230, 1, (STRLEN(?targetMotifMatchCigarQ9V2Z6MF_00809230) - STRLEN(REPLACE(?targetMotifMatchCigarQ9V2Z6MF_00809230, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1240), '}'), '')))), '[^-]', ''))) AS ?step2241) . BIND(((?step2241 + ?targetMotifMatchRegionMatchBeginPositionMF_00809231) - 1) AS ?thisPositionOn74) . BIND(?thisPositionOn74 AS ?thisPositionOn75) . BIND(?this AS ?pfs1t242) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn74))) AS ?pfsb71) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn75))) AS ?pfse72) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn74, 1) = 'H')) . BIND(URI(CONCAT(STR(?this), '#MF_00809a70')) AS ?annotation70) . BIND(?this AS ?pfs69) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch247 faldo:location ?templateMotifSequenceMatchRegionQ9V2Z6248 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ9V2Z6250 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarQ9V2Z6MF_00809243 . ?templateMotifSequenceMatchRegionQ9V2Z6248 faldo:begin ?templateMotifSequenceMatchBeginQ9V2Z6249 . ?templateMotifSequenceMatchBeginQ9V2Z6249 faldo:position ?templateMotifSequenceMatchBeginPositionQ9V2Z6244 ; faldo:reference isoform:Q9V2Z6-1 . ?templateMotifSequenceProfileAlignmentOperationQ9V2Z6250 edam:has_input signature:MF_00809 ; rdf:type edam:operation_0300 . ?targetMotifMatch251 faldo:location ?targetMotifMatchRegionMatch252 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00809254 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarQ9V2Z6MF_00809245 . ?targetMotifMatchRegionMatch252 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00809253 . ?targetMotifMatchRegionMatchBeginMF_00809253 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00809246 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_00809254 edam:has_input signature:MF_00809 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ9V2Z6MF_00809243, 1, (STRLEN(?templateMotifCigarQ9V2Z6MF_00809243) - STRLEN(REPLACE(?templateMotifCigarQ9V2Z6MF_00809243, CONCAT('^(?:-*[^-]){', STR(((292 - ?templateMotifSequenceMatchBeginPositionQ9V2Z6244) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1255) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ9V2Z6MF_00809245, 1, (STRLEN(?targetMotifMatchCigarQ9V2Z6MF_00809245) - STRLEN(REPLACE(?targetMotifMatchCigarQ9V2Z6MF_00809245, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1255), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ9V2Z6MF_00809245, 1, (STRLEN(?targetMotifMatchCigarQ9V2Z6MF_00809245) - STRLEN(REPLACE(?targetMotifMatchCigarQ9V2Z6MF_00809245, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1255), '}'), '')))), '[^-]', ''))) AS ?step2256) . BIND(((?step2256 + ?targetMotifMatchRegionMatchBeginPositionMF_00809246) - 1) AS ?thisPositionOn81) . BIND(?thisPositionOn81 AS ?thisPositionOn82) . BIND(?this AS ?pfs1t257) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn81))) AS ?pfsb78) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn82))) AS ?pfse79) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn81, 1) = 'N')) . BIND(URI(CONCAT(STR(?this), '#MF_00809a77')) AS ?annotation77) . BIND(?this AS ?pfs76) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch262 faldo:location ?templateMotifSequenceMatchRegionQ9V2Z6263 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ9V2Z6265 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarQ9V2Z6MF_00809258 . ?templateMotifSequenceMatchRegionQ9V2Z6263 faldo:begin ?templateMotifSequenceMatchBeginQ9V2Z6264 . ?templateMotifSequenceMatchBeginQ9V2Z6264 faldo:position ?templateMotifSequenceMatchBeginPositionQ9V2Z6259 ; faldo:reference isoform:Q9V2Z6-1 . ?templateMotifSequenceProfileAlignmentOperationQ9V2Z6265 edam:has_input signature:MF_00809 ; rdf:type edam:operation_0300 . ?targetMotifMatch266 faldo:location ?targetMotifMatchRegionMatch267 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00809269 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarQ9V2Z6MF_00809260 . ?targetMotifMatchRegionMatch267 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00809268 . ?targetMotifMatchRegionMatchBeginMF_00809268 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00809261 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_00809269 edam:has_input signature:MF_00809 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ9V2Z6MF_00809258, 1, (STRLEN(?templateMotifCigarQ9V2Z6MF_00809258) - STRLEN(REPLACE(?templateMotifCigarQ9V2Z6MF_00809258, CONCAT('^(?:-*[^-]){', STR(((429 - ?templateMotifSequenceMatchBeginPositionQ9V2Z6259) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1270) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ9V2Z6MF_00809260, 1, (STRLEN(?targetMotifMatchCigarQ9V2Z6MF_00809260) - STRLEN(REPLACE(?targetMotifMatchCigarQ9V2Z6MF_00809260, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1270), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ9V2Z6MF_00809260, 1, (STRLEN(?targetMotifMatchCigarQ9V2Z6MF_00809260) - STRLEN(REPLACE(?targetMotifMatchCigarQ9V2Z6MF_00809260, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1270), '}'), '')))), '[^-]', ''))) AS ?step2271) . BIND(((?step2271 + ?targetMotifMatchRegionMatchBeginPositionMF_00809261) - 1) AS ?thisPositionOn88) . BIND(?thisPositionOn88 AS ?thisPositionOn89) . BIND(?this AS ?pfs1t272) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn88))) AS ?pfsb85) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn89))) AS ?pfse86) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn88, 1) = 'V')) . BIND(URI(CONCAT(STR(?this), '#MF_00809a84')) AS ?annotation84) . BIND(?this AS ?pfs83) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch277 faldo:location ?templateMotifSequenceMatchRegionQ9V2Z6278 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ9V2Z6280 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarQ9V2Z6MF_00809273 . ?templateMotifSequenceMatchRegionQ9V2Z6278 faldo:begin ?templateMotifSequenceMatchBeginQ9V2Z6279 . ?templateMotifSequenceMatchBeginQ9V2Z6279 faldo:position ?templateMotifSequenceMatchBeginPositionQ9V2Z6274 ; faldo:reference isoform:Q9V2Z6-1 . ?templateMotifSequenceProfileAlignmentOperationQ9V2Z6280 edam:has_input signature:MF_00809 ; rdf:type edam:operation_0300 . ?targetMotifMatch281 faldo:location ?targetMotifMatchRegionMatch282 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00809284 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarQ9V2Z6MF_00809275 . ?targetMotifMatchRegionMatch282 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00809283 . ?targetMotifMatchRegionMatchBeginMF_00809283 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00809276 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_00809284 edam:has_input signature:MF_00809 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ9V2Z6MF_00809273, 1, (STRLEN(?templateMotifCigarQ9V2Z6MF_00809273) - STRLEN(REPLACE(?templateMotifCigarQ9V2Z6MF_00809273, CONCAT('^(?:-*[^-]){', STR(((439 - ?templateMotifSequenceMatchBeginPositionQ9V2Z6274) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1285) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ9V2Z6MF_00809275, 1, (STRLEN(?targetMotifMatchCigarQ9V2Z6MF_00809275) - STRLEN(REPLACE(?targetMotifMatchCigarQ9V2Z6MF_00809275, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1285), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ9V2Z6MF_00809275, 1, (STRLEN(?targetMotifMatchCigarQ9V2Z6MF_00809275) - STRLEN(REPLACE(?targetMotifMatchCigarQ9V2Z6MF_00809275, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1285), '}'), '')))), '[^-]', ''))) AS ?step2286) . BIND(((?step2286 + ?targetMotifMatchRegionMatchBeginPositionMF_00809276) - 1) AS ?thisPositionOn95) . BIND(?thisPositionOn95 AS ?thisPositionOn96) . BIND(?this AS ?pfs1t287) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn95))) AS ?pfsb92) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn96))) AS ?pfse93) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn95, 1) = 'G')) . BIND(URI(CONCAT(STR(?this), '#MF_00809a91')) AS ?annotation91) . BIND(?this AS ?pfs90) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch292 faldo:location ?templateMotifSequenceMatchRegionQ9V2Z6293 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ9V2Z6295 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarQ9V2Z6MF_00809288 . ?templateMotifSequenceMatchRegionQ9V2Z6293 faldo:begin ?templateMotifSequenceMatchBeginQ9V2Z6294 . ?templateMotifSequenceMatchBeginQ9V2Z6294 faldo:position ?templateMotifSequenceMatchBeginPositionQ9V2Z6289 ; faldo:reference isoform:Q9V2Z6-1 . ?templateMotifSequenceProfileAlignmentOperationQ9V2Z6295 edam:has_input signature:MF_00809 ; rdf:type edam:operation_0300 . ?targetMotifMatch296 faldo:location ?targetMotifMatchRegionMatch297 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00809299 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarQ9V2Z6MF_00809290 . ?targetMotifMatchRegionMatch297 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00809298 . ?targetMotifMatchRegionMatchBeginMF_00809298 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00809291 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_00809299 edam:has_input signature:MF_00809 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ9V2Z6MF_00809288, 1, (STRLEN(?templateMotifCigarQ9V2Z6MF_00809288) - STRLEN(REPLACE(?templateMotifCigarQ9V2Z6MF_00809288, CONCAT('^(?:-*[^-]){', STR(((440 - ?templateMotifSequenceMatchBeginPositionQ9V2Z6289) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1300) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ9V2Z6MF_00809290, 1, (STRLEN(?targetMotifMatchCigarQ9V2Z6MF_00809290) - STRLEN(REPLACE(?targetMotifMatchCigarQ9V2Z6MF_00809290, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1300), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ9V2Z6MF_00809290, 1, (STRLEN(?targetMotifMatchCigarQ9V2Z6MF_00809290) - STRLEN(REPLACE(?targetMotifMatchCigarQ9V2Z6MF_00809290, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1300), '}'), '')))), '[^-]', ''))) AS ?step2301) . BIND(((?step2301 + ?targetMotifMatchRegionMatchBeginPositionMF_00809291) - 1) AS ?thisPositionOn102) . BIND(?thisPositionOn102 AS ?thisPositionOn103) . BIND(?this AS ?pfs1t302) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn102))) AS ?pfsb99) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn103))) AS ?pfse100) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn102, 1) = 'D')) . BIND(URI(CONCAT(STR(?this), '#MF_00809a98')) AS ?annotation98) . BIND(?this AS ?pfs97) . } }