CONSTRUCT { _:296163 up:source unirule:MF_00834 . _:296164 up:source unirule:MF_00834 . _:296165 up:source unirule:MF_00834 . _:296166 up:source unirule:MF_00834 . _:296167 up:source unirule:MF_00834 . _:296168 up:source unirule:MF_00834 . _:296169 up:source unirule:MF_00834 . _:296170 up:source unirule:MF_00834 . _:296171 up:source unirule:MF_00834 . _:296172 up:source unirule:MF_00834 . _:296173 up:source unirule:MF_00834 . _:296174 up:source unirule:MF_00834 . _:296175 up:source unirule:MF_00834 . _:296176 up:source unirule:MF_00834 . _:296177 up:source unirule:MF_00834 . _:296178 up:source unirule:MF_00834 . _:296179 up:source unirule:MF_00834 . _:296180 up:source unirule:MF_00834 . _:296181 up:source unirule:MF_00834 . _:296182 up:source unirule:MF_00834 . _:296183 up:source unirule:MF_00834 . _:296184 up:source unirule:MF_00834 . _:296185 up:source unirule:MF_00834 . _:296186 up:source unirule:MF_00834 . _:296187 up:source unirule:MF_00834 . _:296188 up:source unirule:MF_00834 . _:296189 up:source unirule:MF_00834 . _:296190 up:source unirule:MF_00834 . _:296191 up:source unirule:MF_00834 . _:296192 up:source unirule:MF_00834 . _:296193 up:source unirule:MF_00834 . _:296194 up:source unirule:MF_00834 . ?this up:alternativeName ?name1 , ?name2 , ?name3 ; up:annotation ?annotation5 , ?annotation6 , ?annotation8 , ?annotation9 , ?annotation10 , ?annotation11 , ?annotation13 ; up:classifiedWith GO:0004015 , GO:0005737 , GO:0009102 , GO:0030170 , keyword:32 , keyword:663 , keyword:808 , keyword:93 , keyword:949 , keyword:963 ; up:recommendedName ?name0 . ?name0 up:ecName '2.6.1.62' ; up:fullName 'Adenosylmethionine-8-amino-7-oxononanoate aminotransferase' ; rdf:type up:Structured_Name . ?name1 up:fullName '7,8-diamino-pelargonic acid aminotransferase' ; up:shortName 'DAPA AT' , 'DAPA aminotransferase' ; rdf:type up:Structured_Name . ?name2 up:fullName '7,8-diaminononanoate synthase' ; up:shortName 'DANS' ; rdf:type up:Structured_Name . ?name3 up:fullName 'Diaminopelargonic acid synthase' ; rdf:type up:Structured_Name . ?gene4 skos:prefLabel 'bioA' . ?annotation5 a up:Function_Annotation ; rdfs:comment 'Catalyzes the transfer of the alpha-amino group from S-adenosyl-L-methionine (SAM) to 7-keto-8-aminopelargonic acid (KAPA) to form 7,8-diaminopelargonic acid (DAPA). It is the only aminotransferase known to utilize SAM as an amino donor.' . ?annotation6 up:activity ?activity7 ; rdf:type up:Catalytic_Activity_Annotation . ?activity7 up:catalyticActivity <http://rdf.rhea-db.org/16861>; up:enzymeClass <http://purl.uniprot.org/enzyme/2.6.1.62>. ?annotation8 up:cofactor chebi:597326 ; rdf:type up:Cofactor_Annotation . ?annotation9 a up:Pathway_Annotation ; rdfs:comment 'Cofactor biosynthesis; biotin biosynthesis; 7,8-diaminononanoate from 8-amino-7-oxononanoate (SAM route): step 1/1.' . ?annotation10 a up:Subunit_Annotation ; rdfs:comment 'Homodimer.' . ?annotation11 a up:Subcellular_Location_Annotation . ?annotation11li12 up:cellularComponent <http://purl.uniprot.org/locations/null>. ?annotation13 a up:Similarity_Annotation ; rdfs:comment 'Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. BioA subfamily.' . ?pfs14 up:annotation ?annotation15 . ?annotation15 faldo:begin ?pfsb16 ; faldo:end ?pfse17 ; rdf:type up:Site_Annotation ; rdfs:comment 'Participates in the substrate recognition with KAPA and in a stacking interaction with the adenine ring of SAM' . ?pfsb16 faldo:position ?thisPositionOn18 ; rdf:type faldo:ExactPosition . ?pfse17 faldo:position ?thisPositionOn19 ; rdf:type faldo:ExactPosition . ?pfs20 up:annotation ?annotation21 . ?annotation21 faldo:begin ?pfsb22 ; faldo:end ?pfse23 ; up:ligand ?ligand24 ; rdf:type up:Binding_Site_Annotation . ?pfsb22 faldo:position ?thisPositionOn25 ; rdf:type faldo:ExactPosition . ?pfse23 faldo:position ?thisPositionOn26 ; rdf:type faldo:ExactPosition . ?ligand24 rdfs:subClassOf chebi:597326 . ?pfs27 up:annotation ?annotation28 . ?annotation28 faldo:begin ?pfsb29 ; faldo:end ?pfse30 ; up:ligand ?ligand31 ; rdf:type up:Binding_Site_Annotation . ?pfsb29 faldo:position ?thisPositionOn32 ; rdf:type faldo:ExactPosition . ?pfse30 faldo:position ?thisPositionOn33 ; rdf:type faldo:ExactPosition . ?ligand31 rdfs:subClassOf chebi:597326 . ?pfs34 up:annotation ?annotation35 . ?annotation35 faldo:begin ?pfsb36 ; faldo:end ?pfse37 ; up:ligand ?ligand38 ; rdf:type up:Binding_Site_Annotation . ?pfsb36 faldo:position ?thisPositionOn40 ; rdf:type faldo:ExactPosition . ?pfse37 faldo:position ?thisPositionOn41 ; rdf:type faldo:ExactPosition . ?ligand38 rdfs:subClassOf ?molecule39 . ?molecule39 rdfs:label 'substrate' . ?pfs42 up:annotation ?annotation43 . ?annotation43 faldo:begin ?pfsb44 ; faldo:end ?pfse45 ; up:ligand ?ligand46 ; rdf:type up:Binding_Site_Annotation . ?pfsb44 faldo:position ?thisPositionOn48 ; rdf:type faldo:ExactPosition . ?pfse45 faldo:position ?thisPositionOn49 ; rdf:type faldo:ExactPosition . ?ligand46 rdfs:subClassOf ?molecule47 . ?molecule47 rdfs:label 'substrate' . ?pfs50 up:annotation ?annotation51 . ?annotation51 faldo:begin ?pfsb52 ; faldo:end ?pfse53 ; up:ligand ?ligand54 ; rdf:type up:Binding_Site_Annotation . ?pfsb52 faldo:position ?thisPositionOn55 ; rdf:type faldo:ExactPosition . ?pfse53 faldo:position ?thisPositionOn56 ; rdf:type faldo:ExactPosition . ?ligand54 rdfs:subClassOf chebi:597326 . ?pfs57 up:annotation ?annotation58 . ?annotation58 faldo:begin ?pfsb59 ; faldo:end ?pfse60 ; up:ligand ?ligand61 ; rdf:type up:Binding_Site_Annotation . ?pfsb59 faldo:position ?thisPositionOn63 ; rdf:type faldo:ExactPosition . ?pfse60 faldo:position ?thisPositionOn64 ; rdf:type faldo:ExactPosition . ?ligand61 rdfs:subClassOf ?molecule62 . ?molecule62 rdfs:label 'substrate' . ?pfs65 up:annotation ?annotation66 . ?annotation66 faldo:begin ?pfsb67 ; faldo:end ?pfse68 ; up:ligand ?ligand69 ; rdf:type up:Binding_Site_Annotation . ?pfsb67 faldo:position ?thisPositionOn71 ; rdf:type faldo:ExactPosition . ?pfse68 faldo:position ?thisPositionOn72 ; rdf:type faldo:ExactPosition . ?ligand69 rdfs:subClassOf ?molecule70 . ?molecule70 rdfs:label 'substrate' . ?pfs73 up:annotation ?annotation74 . ?annotation74 faldo:begin ?pfsb75 ; faldo:end ?pfse76 ; up:ligand ?ligand77 ; rdf:type up:Binding_Site_Annotation . ?pfsb75 faldo:position ?thisPositionOn79 ; rdf:type faldo:ExactPosition . ?pfse76 faldo:position ?thisPositionOn80 ; rdf:type faldo:ExactPosition . ?ligand77 rdfs:subClassOf ?molecule78 . ?molecule78 rdfs:label 'substrate' . ?pfs81 up:annotation ?annotation82 . ?annotation82 faldo:begin ?pfsb83 ; faldo:end ?pfse84 ; rdf:type up:Modified_Residue_Annotation ; rdfs:comment 'N6-(pyridoxal phosphate)lysine' . ?pfsb83 faldo:position ?thisPositionOn85 ; rdf:type faldo:ExactPosition . ?pfse84 faldo:position ?thisPositionOn86 ; rdf:type faldo:ExactPosition . _:296195 a rdf:Statement ; up:attribution _:296163 ; rdf:subject ?this ; rdf:predicate up:recommendedName ; rdf:object ?name0 . _:296196 a rdf:Statement ; up:attribution _:296164 ; rdf:subject ?this ; rdf:predicate up:alternativeName ; rdf:object ?name1 . _:296197 a rdf:Statement ; up:attribution _:296165 ; rdf:subject ?this ; rdf:predicate up:alternativeName ; rdf:object ?name2 . _:296198 a rdf:Statement ; up:attribution _:296166 ; rdf:subject ?this ; rdf:predicate up:alternativeName ; rdf:object ?name3 . _:296199 a rdf:Statement ; up:attribution _:296167 ; rdf:subject ?gene4 ; rdf:predicate up:encodedBy ; rdf:object ?gene4 . _:296200 a rdf:Statement ; up:attribution _:296168 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation5 . _:296201 a rdf:Statement ; up:attribution _:296169 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation6 . _:296202 a rdf:Statement ; up:attribution _:296170 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation8 . _:296203 a rdf:Statement ; up:attribution _:296171 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation9 . _:296204 a rdf:Statement ; up:attribution _:296172 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation10 . _:296205 a rdf:Statement ; up:attribution _:296173 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation11 . _:296206 a rdf:Statement ; up:attribution _:296174 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation13 . _:296207 a rdf:Statement ; up:attribution _:296175 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:32 . _:296208 a rdf:Statement ; up:attribution _:296176 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:93 . _:296209 a rdf:Statement ; up:attribution _:296177 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:963 . _:296210 a rdf:Statement ; up:attribution _:296178 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:663 . _:296211 a rdf:Statement ; up:attribution _:296179 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:949 . _:296212 a rdf:Statement ; up:attribution _:296180 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:808 . _:296213 a rdf:Statement ; up:attribution _:296181 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object GO:0004015 . _:296214 a rdf:Statement ; up:attribution _:296182 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object GO:0030170 . _:296215 a rdf:Statement ; up:attribution _:296183 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object GO:0009102 . _:296216 a rdf:Statement ; up:attribution _:296184 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object GO:0005737 . _:296217 a rdf:Statement ; up:source unirule:MF_00834 ; rdf:subject ?pfs14 ; rdf:predicate up:annotation ; rdf:object ?annotation15 . _:296218 a rdf:Statement ; up:attribution _:296185 ; rdf:subject ?pfs14 ; rdf:predicate up:annotation ; rdf:object ?annotation15 . _:296219 a rdf:Statement ; up:source unirule:MF_00834 ; rdf:subject ?pfs20 ; rdf:predicate up:annotation ; rdf:object ?annotation21 . _:296220 a rdf:Statement ; up:attribution _:296186 ; rdf:subject ?pfs20 ; rdf:predicate up:annotation ; rdf:object ?annotation21 . _:296221 a rdf:Statement ; up:source unirule:MF_00834 ; rdf:subject ?pfs27 ; rdf:predicate up:annotation ; rdf:object ?annotation28 . _:296222 a rdf:Statement ; up:attribution _:296187 ; rdf:subject ?pfs27 ; rdf:predicate up:annotation ; rdf:object ?annotation28 . _:296223 a rdf:Statement ; up:source unirule:MF_00834 ; rdf:subject ?pfs34 ; rdf:predicate up:annotation ; rdf:object ?annotation35 . _:296224 a rdf:Statement ; up:attribution _:296188 ; rdf:subject ?pfs34 ; rdf:predicate up:annotation ; rdf:object ?annotation35 . _:296225 a rdf:Statement ; up:source unirule:MF_00834 ; rdf:subject ?pfs42 ; rdf:predicate up:annotation ; rdf:object ?annotation43 . _:296226 a rdf:Statement ; up:attribution _:296189 ; rdf:subject ?pfs42 ; rdf:predicate up:annotation ; rdf:object ?annotation43 . _:296227 a rdf:Statement ; up:source unirule:MF_00834 ; rdf:subject ?pfs50 ; rdf:predicate up:annotation ; rdf:object ?annotation51 . _:296228 a rdf:Statement ; up:attribution _:296190 ; rdf:subject ?pfs50 ; rdf:predicate up:annotation ; rdf:object ?annotation51 . _:296229 a rdf:Statement ; up:source unirule:MF_00834 ; rdf:subject ?pfs57 ; rdf:predicate up:annotation ; rdf:object ?annotation58 . _:296230 a rdf:Statement ; up:attribution _:296191 ; rdf:subject ?pfs57 ; rdf:predicate up:annotation ; rdf:object ?annotation58 . _:296231 a rdf:Statement ; up:source unirule:MF_00834 ; rdf:subject ?pfs65 ; rdf:predicate up:annotation ; rdf:object ?annotation66 . _:296232 a rdf:Statement ; up:attribution _:296192 ; rdf:subject ?pfs65 ; rdf:predicate up:annotation ; rdf:object ?annotation66 . _:296233 a rdf:Statement ; up:source unirule:MF_00834 ; rdf:subject ?pfs73 ; rdf:predicate up:annotation ; rdf:object ?annotation74 . _:296234 a rdf:Statement ; up:attribution _:296193 ; rdf:subject ?pfs73 ; rdf:predicate up:annotation ; rdf:object ?annotation74 . _:296235 a rdf:Statement ; up:source unirule:MF_00834 ; rdf:subject ?pfs81 ; rdf:predicate up:annotation ; rdf:object ?annotation82 . _:296236 a rdf:Statement ; up:attribution _:296194 ; rdf:subject ?pfs81 ; rdf:predicate up:annotation ; rdf:object ?annotation82 . } WHERE { #baseURI: http://purl.uniprot.org/unirule/MF_00834 #Rule MF_00834 Created by:? on:2011-06-22 Modified by:Edouard de Castro on:2024-09-03 VALUES ?supertaxon87 {taxon:2 taxon:2157} ?this up:organism ?thisOrganism ; rdfs:seeAlso signature:MF_00834 . ?thisOrganism rdfs:subClassOf+ ?supertaxon87 . BIND(URI(CONCAT(STR(?this), '#MF_00834a0')) AS ?name0) . BIND(URI(CONCAT(STR(?this), '#MF_00834a1')) AS ?name1) . BIND(URI(CONCAT(STR(?this), '#MF_00834a2')) AS ?name2) . BIND(URI(CONCAT(STR(?this), '#MF_00834a3')) AS ?name3) . BIND(URI(CONCAT(STR(?this), '#MF_00834a5')) AS ?annotation5) . BIND(URI(CONCAT(STR(?this), '#MF_00834a6')) AS ?annotation6) . BIND(URI(CONCAT(STR(?this), '#MF_00834a8')) AS ?annotation8) . BIND(URI(CONCAT(STR(?this), '#MF_00834a9')) AS ?annotation9) . BIND(URI(CONCAT(STR(?this), '#MF_00834a10')) AS ?annotation10) . BIND(URI(CONCAT(STR(?this), '#MF_00834a11')) AS ?annotation11) . BIND(URI(CONCAT(STR(?this), '#MF_00834a13')) AS ?annotation13) . OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch92 faldo:location ?templateMotifSequenceMatchRegionP1299593 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP1299595 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP12995MF_0083488 . ?templateMotifSequenceMatchRegionP1299593 faldo:begin ?templateMotifSequenceMatchBeginP1299594 . ?templateMotifSequenceMatchBeginP1299594 faldo:position ?templateMotifSequenceMatchBeginPositionP1299589 ; faldo:reference isoform:P12995-1 . ?templateMotifSequenceProfileAlignmentOperationP1299595 edam:has_input signature:MF_00834 ; rdf:type edam:operation_0300 . ?targetMotifMatch96 faldo:location ?targetMotifMatchRegionMatch97 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0083499 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP12995MF_0083490 . ?targetMotifMatchRegionMatch97 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0083498 . ?targetMotifMatchRegionMatchBeginMF_0083498 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0083491 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_0083499 edam:has_input signature:MF_00834 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP12995MF_0083488, 1, (STRLEN(?templateMotifCigarP12995MF_0083488) - STRLEN(REPLACE(?templateMotifCigarP12995MF_0083488, CONCAT('^(?:-*[^-]){', STR(((17 - ?templateMotifSequenceMatchBeginPositionP1299589) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1100) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP12995MF_0083490, 1, (STRLEN(?targetMotifMatchCigarP12995MF_0083490) - STRLEN(REPLACE(?targetMotifMatchCigarP12995MF_0083490, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1100), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP12995MF_0083490, 1, (STRLEN(?targetMotifMatchCigarP12995MF_0083490) - STRLEN(REPLACE(?targetMotifMatchCigarP12995MF_0083490, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1100), '}'), '')))), '[^-]', ''))) AS ?step2101) . BIND(((?step2101 + ?targetMotifMatchRegionMatchBeginPositionMF_0083491) - 1) AS ?thisPositionOn18) . BIND(?thisPositionOn18 AS ?thisPositionOn19) . BIND(?this AS ?pfs1t102) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn18))) AS ?pfsb16) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn19))) AS ?pfse17) . FILTER (BOUND(?thisPositionOn18)) . BIND(URI(CONCAT(STR(?this), '#MF_00834a15')) AS ?annotation15) . BIND(?this AS ?pfs14) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch107 faldo:location ?templateMotifSequenceMatchRegionP12995108 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP12995110 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP12995MF_00834103 . ?templateMotifSequenceMatchRegionP12995108 faldo:begin ?templateMotifSequenceMatchBeginP12995109 . ?templateMotifSequenceMatchBeginP12995109 faldo:position ?templateMotifSequenceMatchBeginPositionP12995104 ; faldo:reference isoform:P12995-1 . ?templateMotifSequenceProfileAlignmentOperationP12995110 edam:has_input signature:MF_00834 ; rdf:type edam:operation_0300 . ?targetMotifMatch111 faldo:location ?targetMotifMatchRegionMatch112 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00834114 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP12995MF_00834105 . ?targetMotifMatchRegionMatch112 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00834113 . ?targetMotifMatchRegionMatchBeginMF_00834113 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00834106 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_00834114 edam:has_input signature:MF_00834 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP12995MF_00834103, 1, (STRLEN(?templateMotifCigarP12995MF_00834103) - STRLEN(REPLACE(?templateMotifCigarP12995MF_00834103, CONCAT('^(?:-*[^-]){', STR(((112 - ?templateMotifSequenceMatchBeginPositionP12995104) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1115) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP12995MF_00834105, 1, (STRLEN(?targetMotifMatchCigarP12995MF_00834105) - STRLEN(REPLACE(?targetMotifMatchCigarP12995MF_00834105, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1115), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP12995MF_00834105, 1, (STRLEN(?targetMotifMatchCigarP12995MF_00834105) - STRLEN(REPLACE(?targetMotifMatchCigarP12995MF_00834105, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1115), '}'), '')))), '[^-]', ''))) AS ?step2116) . BIND(((?step2116 + ?targetMotifMatchRegionMatchBeginPositionMF_00834106) - 1) AS ?thisPositionOn25) . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP12995MF_00834103, 1, (STRLEN(?templateMotifCigarP12995MF_00834103) - STRLEN(REPLACE(?templateMotifCigarP12995MF_00834103, CONCAT('^(?:-*[^-]){', STR(((113 - ?templateMotifSequenceMatchBeginPositionP12995104) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1117) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP12995MF_00834105, 1, (STRLEN(?targetMotifMatchCigarP12995MF_00834105) - STRLEN(REPLACE(?targetMotifMatchCigarP12995MF_00834105, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1117), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP12995MF_00834105, 1, (STRLEN(?targetMotifMatchCigarP12995MF_00834105) - STRLEN(REPLACE(?targetMotifMatchCigarP12995MF_00834105, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1117), '}'), '')))), '[^-]', ''))) AS ?step2118) . BIND(((?step2118 + ?targetMotifMatchRegionMatchBeginPositionMF_00834106) - 1) AS ?thisPositionOn26) . BIND(?this AS ?pfs1t119) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn25))) AS ?pfsb22) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn26))) AS ?pfse23) . FILTER (REGEX('G[SA]', SUBSTR(?thisSequenceValue, ?thisPositionOn25, (?thisPositionOn26 - ?thisPositionOn25)))) . BIND(URI(CONCAT(STR(?this), '#MF_00834a21')) AS ?annotation21) . BIND(?this AS ?pfs20) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch124 faldo:location ?templateMotifSequenceMatchRegionP12995125 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP12995127 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP12995MF_00834120 . ?templateMotifSequenceMatchRegionP12995125 faldo:begin ?templateMotifSequenceMatchBeginP12995126 . ?templateMotifSequenceMatchBeginP12995126 faldo:position ?templateMotifSequenceMatchBeginPositionP12995121 ; faldo:reference isoform:P12995-1 . ?templateMotifSequenceProfileAlignmentOperationP12995127 edam:has_input signature:MF_00834 ; rdf:type edam:operation_0300 . ?targetMotifMatch128 faldo:location ?targetMotifMatchRegionMatch129 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00834131 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP12995MF_00834122 . ?targetMotifMatchRegionMatch129 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00834130 . ?targetMotifMatchRegionMatchBeginMF_00834130 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00834123 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_00834131 edam:has_input signature:MF_00834 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP12995MF_00834120, 1, (STRLEN(?templateMotifCigarP12995MF_00834120) - STRLEN(REPLACE(?templateMotifCigarP12995MF_00834120, CONCAT('^(?:-*[^-]){', STR(((308 - ?templateMotifSequenceMatchBeginPositionP12995121) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1132) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP12995MF_00834122, 1, (STRLEN(?targetMotifMatchCigarP12995MF_00834122) - STRLEN(REPLACE(?targetMotifMatchCigarP12995MF_00834122, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1132), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP12995MF_00834122, 1, (STRLEN(?targetMotifMatchCigarP12995MF_00834122) - STRLEN(REPLACE(?targetMotifMatchCigarP12995MF_00834122, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1132), '}'), '')))), '[^-]', ''))) AS ?step2133) . BIND(((?step2133 + ?targetMotifMatchRegionMatchBeginPositionMF_00834123) - 1) AS ?thisPositionOn32) . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP12995MF_00834120, 1, (STRLEN(?templateMotifCigarP12995MF_00834120) - STRLEN(REPLACE(?templateMotifCigarP12995MF_00834120, CONCAT('^(?:-*[^-]){', STR(((309 - ?templateMotifSequenceMatchBeginPositionP12995121) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1134) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP12995MF_00834122, 1, (STRLEN(?targetMotifMatchCigarP12995MF_00834122) - STRLEN(REPLACE(?targetMotifMatchCigarP12995MF_00834122, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1134), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP12995MF_00834122, 1, (STRLEN(?targetMotifMatchCigarP12995MF_00834122) - STRLEN(REPLACE(?targetMotifMatchCigarP12995MF_00834122, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1134), '}'), '')))), '[^-]', ''))) AS ?step2135) . BIND(((?step2135 + ?targetMotifMatchRegionMatchBeginPositionMF_00834123) - 1) AS ?thisPositionOn33) . BIND(?this AS ?pfs1t136) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn32))) AS ?pfsb29) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn33))) AS ?pfse30) . FILTER (REGEX('[PHNS][TS]', SUBSTR(?thisSequenceValue, ?thisPositionOn32, (?thisPositionOn33 - ?thisPositionOn32)))) . BIND(URI(CONCAT(STR(?this), '#MF_00834a28')) AS ?annotation28) . BIND(?this AS ?pfs27) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch141 faldo:location ?templateMotifSequenceMatchRegionP12995142 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP12995144 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP12995MF_00834137 . ?templateMotifSequenceMatchRegionP12995142 faldo:begin ?templateMotifSequenceMatchBeginP12995143 . ?templateMotifSequenceMatchBeginP12995143 faldo:position ?templateMotifSequenceMatchBeginPositionP12995138 ; faldo:reference isoform:P12995-1 . ?templateMotifSequenceProfileAlignmentOperationP12995144 edam:has_input signature:MF_00834 ; rdf:type edam:operation_0300 . ?targetMotifMatch145 faldo:location ?targetMotifMatchRegionMatch146 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00834148 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP12995MF_00834139 . ?targetMotifMatchRegionMatch146 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00834147 . ?targetMotifMatchRegionMatchBeginMF_00834147 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00834140 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_00834148 edam:has_input signature:MF_00834 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP12995MF_00834137, 1, (STRLEN(?templateMotifCigarP12995MF_00834137) - STRLEN(REPLACE(?templateMotifCigarP12995MF_00834137, CONCAT('^(?:-*[^-]){', STR(((52 - ?templateMotifSequenceMatchBeginPositionP12995138) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1149) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP12995MF_00834139, 1, (STRLEN(?targetMotifMatchCigarP12995MF_00834139) - STRLEN(REPLACE(?targetMotifMatchCigarP12995MF_00834139, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1149), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP12995MF_00834139, 1, (STRLEN(?targetMotifMatchCigarP12995MF_00834139) - STRLEN(REPLACE(?targetMotifMatchCigarP12995MF_00834139, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1149), '}'), '')))), '[^-]', ''))) AS ?step2150) . BIND(((?step2150 + ?targetMotifMatchRegionMatchBeginPositionMF_00834140) - 1) AS ?thisPositionOn40) . BIND(?thisPositionOn40 AS ?thisPositionOn41) . BIND(?this AS ?pfs1t151) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn40))) AS ?pfsb36) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn41))) AS ?pfse37) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn40, 1) = 'W')) . BIND(URI(CONCAT(STR(?this), '#MF_00834a35')) AS ?annotation35) . BIND(?this AS ?pfs34) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch156 faldo:location ?templateMotifSequenceMatchRegionP12995157 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP12995159 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP12995MF_00834152 . ?templateMotifSequenceMatchRegionP12995157 faldo:begin ?templateMotifSequenceMatchBeginP12995158 . ?templateMotifSequenceMatchBeginP12995158 faldo:position ?templateMotifSequenceMatchBeginPositionP12995153 ; faldo:reference isoform:P12995-1 . ?templateMotifSequenceProfileAlignmentOperationP12995159 edam:has_input signature:MF_00834 ; rdf:type edam:operation_0300 . ?targetMotifMatch160 faldo:location ?targetMotifMatchRegionMatch161 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00834163 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP12995MF_00834154 . ?targetMotifMatchRegionMatch161 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00834162 . ?targetMotifMatchRegionMatchBeginMF_00834162 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00834155 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_00834163 edam:has_input signature:MF_00834 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP12995MF_00834152, 1, (STRLEN(?templateMotifCigarP12995MF_00834152) - STRLEN(REPLACE(?templateMotifCigarP12995MF_00834152, CONCAT('^(?:-*[^-]){', STR(((144 - ?templateMotifSequenceMatchBeginPositionP12995153) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1164) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP12995MF_00834154, 1, (STRLEN(?targetMotifMatchCigarP12995MF_00834154) - STRLEN(REPLACE(?targetMotifMatchCigarP12995MF_00834154, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1164), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP12995MF_00834154, 1, (STRLEN(?targetMotifMatchCigarP12995MF_00834154) - STRLEN(REPLACE(?targetMotifMatchCigarP12995MF_00834154, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1164), '}'), '')))), '[^-]', ''))) AS ?step2165) . BIND(((?step2165 + ?targetMotifMatchRegionMatchBeginPositionMF_00834155) - 1) AS ?thisPositionOn48) . BIND(?thisPositionOn48 AS ?thisPositionOn49) . BIND(?this AS ?pfs1t166) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn48))) AS ?pfsb44) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn49))) AS ?pfse45) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn48, 1) = 'Y')) . BIND(URI(CONCAT(STR(?this), '#MF_00834a43')) AS ?annotation43) . BIND(?this AS ?pfs42) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch171 faldo:location ?templateMotifSequenceMatchRegionP12995172 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP12995174 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP12995MF_00834167 . ?templateMotifSequenceMatchRegionP12995172 faldo:begin ?templateMotifSequenceMatchBeginP12995173 . ?templateMotifSequenceMatchBeginP12995173 faldo:position ?templateMotifSequenceMatchBeginPositionP12995168 ; faldo:reference isoform:P12995-1 . ?templateMotifSequenceProfileAlignmentOperationP12995174 edam:has_input signature:MF_00834 ; rdf:type edam:operation_0300 . ?targetMotifMatch175 faldo:location ?targetMotifMatchRegionMatch176 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00834178 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP12995MF_00834169 . ?targetMotifMatchRegionMatch176 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00834177 . ?targetMotifMatchRegionMatchBeginMF_00834177 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00834170 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_00834178 edam:has_input signature:MF_00834 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP12995MF_00834167, 1, (STRLEN(?templateMotifCigarP12995MF_00834167) - STRLEN(REPLACE(?templateMotifCigarP12995MF_00834167, CONCAT('^(?:-*[^-]){', STR(((245 - ?templateMotifSequenceMatchBeginPositionP12995168) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1179) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP12995MF_00834169, 1, (STRLEN(?targetMotifMatchCigarP12995MF_00834169) - STRLEN(REPLACE(?targetMotifMatchCigarP12995MF_00834169, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1179), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP12995MF_00834169, 1, (STRLEN(?targetMotifMatchCigarP12995MF_00834169) - STRLEN(REPLACE(?targetMotifMatchCigarP12995MF_00834169, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1179), '}'), '')))), '[^-]', ''))) AS ?step2180) . BIND(((?step2180 + ?targetMotifMatchRegionMatchBeginPositionMF_00834170) - 1) AS ?thisPositionOn55) . BIND(?thisPositionOn55 AS ?thisPositionOn56) . BIND(?this AS ?pfs1t181) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn55))) AS ?pfsb52) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn56))) AS ?pfse53) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn55, 1) = 'D')) . BIND(URI(CONCAT(STR(?this), '#MF_00834a51')) AS ?annotation51) . BIND(?this AS ?pfs50) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch186 faldo:location ?templateMotifSequenceMatchRegionP12995187 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP12995189 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP12995MF_00834182 . ?templateMotifSequenceMatchRegionP12995187 faldo:begin ?templateMotifSequenceMatchBeginP12995188 . ?templateMotifSequenceMatchBeginP12995188 faldo:position ?templateMotifSequenceMatchBeginPositionP12995183 ; faldo:reference isoform:P12995-1 . ?templateMotifSequenceProfileAlignmentOperationP12995189 edam:has_input signature:MF_00834 ; rdf:type edam:operation_0300 . ?targetMotifMatch190 faldo:location ?targetMotifMatchRegionMatch191 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00834193 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP12995MF_00834184 . ?targetMotifMatchRegionMatch191 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00834192 . ?targetMotifMatchRegionMatchBeginMF_00834192 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00834185 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_00834193 edam:has_input signature:MF_00834 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP12995MF_00834182, 1, (STRLEN(?templateMotifCigarP12995MF_00834182) - STRLEN(REPLACE(?templateMotifCigarP12995MF_00834182, CONCAT('^(?:-*[^-]){', STR(((274 - ?templateMotifSequenceMatchBeginPositionP12995183) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1194) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP12995MF_00834184, 1, (STRLEN(?targetMotifMatchCigarP12995MF_00834184) - STRLEN(REPLACE(?targetMotifMatchCigarP12995MF_00834184, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1194), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP12995MF_00834184, 1, (STRLEN(?targetMotifMatchCigarP12995MF_00834184) - STRLEN(REPLACE(?targetMotifMatchCigarP12995MF_00834184, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1194), '}'), '')))), '[^-]', ''))) AS ?step2195) . BIND(((?step2195 + ?targetMotifMatchRegionMatchBeginPositionMF_00834185) - 1) AS ?thisPositionOn63) . BIND(?thisPositionOn63 AS ?thisPositionOn64) . BIND(?this AS ?pfs1t196) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn63))) AS ?pfsb59) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn64))) AS ?pfse60) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn63, 1) = 'K')) . BIND(URI(CONCAT(STR(?this), '#MF_00834a58')) AS ?annotation58) . BIND(?this AS ?pfs57) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch201 faldo:location ?templateMotifSequenceMatchRegionP12995202 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP12995204 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP12995MF_00834197 . ?templateMotifSequenceMatchRegionP12995202 faldo:begin ?templateMotifSequenceMatchBeginP12995203 . ?templateMotifSequenceMatchBeginP12995203 faldo:position ?templateMotifSequenceMatchBeginPositionP12995198 ; faldo:reference isoform:P12995-1 . ?templateMotifSequenceProfileAlignmentOperationP12995204 edam:has_input signature:MF_00834 ; rdf:type edam:operation_0300 . ?targetMotifMatch205 faldo:location ?targetMotifMatchRegionMatch206 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00834208 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP12995MF_00834199 . ?targetMotifMatchRegionMatch206 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00834207 . ?targetMotifMatchRegionMatchBeginMF_00834207 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00834200 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_00834208 edam:has_input signature:MF_00834 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP12995MF_00834197, 1, (STRLEN(?templateMotifCigarP12995MF_00834197) - STRLEN(REPLACE(?templateMotifCigarP12995MF_00834197, CONCAT('^(?:-*[^-]){', STR(((307 - ?templateMotifSequenceMatchBeginPositionP12995198) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1209) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP12995MF_00834199, 1, (STRLEN(?targetMotifMatchCigarP12995MF_00834199) - STRLEN(REPLACE(?targetMotifMatchCigarP12995MF_00834199, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1209), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP12995MF_00834199, 1, (STRLEN(?targetMotifMatchCigarP12995MF_00834199) - STRLEN(REPLACE(?targetMotifMatchCigarP12995MF_00834199, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1209), '}'), '')))), '[^-]', ''))) AS ?step2210) . BIND(((?step2210 + ?targetMotifMatchRegionMatchBeginPositionMF_00834200) - 1) AS ?thisPositionOn71) . BIND(?thisPositionOn71 AS ?thisPositionOn72) . BIND(?this AS ?pfs1t211) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn71))) AS ?pfsb67) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn72))) AS ?pfse68) . FILTER (REGEX('[GS]', SUBSTR(?thisSequenceValue, ?thisPositionOn71, 1))) . BIND(URI(CONCAT(STR(?this), '#MF_00834a66')) AS ?annotation66) . BIND(?this AS ?pfs65) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch216 faldo:location ?templateMotifSequenceMatchRegionP12995217 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP12995219 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP12995MF_00834212 . ?templateMotifSequenceMatchRegionP12995217 faldo:begin ?templateMotifSequenceMatchBeginP12995218 . ?templateMotifSequenceMatchBeginP12995218 faldo:position ?templateMotifSequenceMatchBeginPositionP12995213 ; faldo:reference isoform:P12995-1 . ?templateMotifSequenceProfileAlignmentOperationP12995219 edam:has_input signature:MF_00834 ; rdf:type edam:operation_0300 . ?targetMotifMatch220 faldo:location ?targetMotifMatchRegionMatch221 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00834223 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP12995MF_00834214 . ?targetMotifMatchRegionMatch221 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00834222 . ?targetMotifMatchRegionMatchBeginMF_00834222 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00834215 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_00834223 edam:has_input signature:MF_00834 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP12995MF_00834212, 1, (STRLEN(?templateMotifCigarP12995MF_00834212) - STRLEN(REPLACE(?templateMotifCigarP12995MF_00834212, CONCAT('^(?:-*[^-]){', STR(((391 - ?templateMotifSequenceMatchBeginPositionP12995213) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1224) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP12995MF_00834214, 1, (STRLEN(?targetMotifMatchCigarP12995MF_00834214) - STRLEN(REPLACE(?targetMotifMatchCigarP12995MF_00834214, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1224), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP12995MF_00834214, 1, (STRLEN(?targetMotifMatchCigarP12995MF_00834214) - STRLEN(REPLACE(?targetMotifMatchCigarP12995MF_00834214, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1224), '}'), '')))), '[^-]', ''))) AS ?step2225) . BIND(((?step2225 + ?targetMotifMatchRegionMatchBeginPositionMF_00834215) - 1) AS ?thisPositionOn79) . BIND(?thisPositionOn79 AS ?thisPositionOn80) . BIND(?this AS ?pfs1t226) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn79))) AS ?pfsb75) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn80))) AS ?pfse76) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn79, 1) = 'R')) . BIND(URI(CONCAT(STR(?this), '#MF_00834a74')) AS ?annotation74) . BIND(?this AS ?pfs73) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch231 faldo:location ?templateMotifSequenceMatchRegionP12995232 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP12995234 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP12995MF_00834227 . ?templateMotifSequenceMatchRegionP12995232 faldo:begin ?templateMotifSequenceMatchBeginP12995233 . ?templateMotifSequenceMatchBeginP12995233 faldo:position ?templateMotifSequenceMatchBeginPositionP12995228 ; faldo:reference isoform:P12995-1 . ?templateMotifSequenceProfileAlignmentOperationP12995234 edam:has_input signature:MF_00834 ; rdf:type edam:operation_0300 . ?targetMotifMatch235 faldo:location ?targetMotifMatchRegionMatch236 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00834238 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP12995MF_00834229 . ?targetMotifMatchRegionMatch236 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00834237 . ?targetMotifMatchRegionMatchBeginMF_00834237 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00834230 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_00834238 edam:has_input signature:MF_00834 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP12995MF_00834227, 1, (STRLEN(?templateMotifCigarP12995MF_00834227) - STRLEN(REPLACE(?templateMotifCigarP12995MF_00834227, CONCAT('^(?:-*[^-]){', STR(((274 - ?templateMotifSequenceMatchBeginPositionP12995228) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1239) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP12995MF_00834229, 1, (STRLEN(?targetMotifMatchCigarP12995MF_00834229) - STRLEN(REPLACE(?targetMotifMatchCigarP12995MF_00834229, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1239), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP12995MF_00834229, 1, (STRLEN(?targetMotifMatchCigarP12995MF_00834229) - STRLEN(REPLACE(?targetMotifMatchCigarP12995MF_00834229, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1239), '}'), '')))), '[^-]', ''))) AS ?step2240) . BIND(((?step2240 + ?targetMotifMatchRegionMatchBeginPositionMF_00834230) - 1) AS ?thisPositionOn85) . BIND(?thisPositionOn85 AS ?thisPositionOn86) . BIND(?this AS ?pfs1t241) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn85))) AS ?pfsb83) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn86))) AS ?pfse84) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn85, 1) = 'K')) . BIND(URI(CONCAT(STR(?this), '#MF_00834a82')) AS ?annotation82) . BIND(?this AS ?pfs81) . } }