CONSTRUCT { _:297174 up:source unirule:MF_00847 . _:297175 up:source unirule:MF_00847 . _:297176 up:source unirule:MF_00847 . _:297177 up:source unirule:MF_00847 . _:297178 up:source unirule:MF_00847 . _:297179 up:source unirule:MF_00847 . _:297180 up:source unirule:MF_00847 . _:297181 up:source unirule:MF_00847 . _:297182 up:source unirule:MF_00847 . _:297183 up:source unirule:MF_00847 . _:297184 up:source unirule:MF_00847 . _:297185 up:source unirule:MF_00847 . _:297186 up:source unirule:MF_00847 . _:297187 up:source unirule:MF_00847 . _:297188 up:source unirule:MF_00847 . _:297189 up:source unirule:MF_00847 . _:297190 up:source unirule:MF_00847 . _:297191 up:source unirule:MF_00847 . _:297192 up:source unirule:MF_00847 . _:297193 up:source unirule:MF_00847 . _:297194 up:source unirule:MF_00847 . _:297195 up:source unirule:MF_00847 . _:297196 up:source unirule:MF_00847 . _:297197 up:source unirule:MF_00847 . _:297198 up:source unirule:MF_00847 . _:297199 up:source unirule:MF_00847 . _:297200 up:source unirule:MF_00847 . _:297201 up:source unirule:MF_00847 . _:297202 up:source unirule:MF_00847 . _:297203 up:source unirule:MF_00847 . _:297204 up:source unirule:MF_00847 . _:297205 up:source unirule:MF_00847 . _:297206 up:source unirule:MF_00847 . ?this up:alternativeName ?name1 ; up:annotation ?annotation3 , ?annotation4 , ?annotation6 , ?annotation7 , ?annotation9 , ?annotation10 , ?annotation11 ; up:classifiedWith GO:0000049 , GO:0005524 , GO:0005737 , GO:0016887 , GO:0019843 , GO:0043022 , GO:0045900 , keyword:378 , keyword:547 , keyword:648 , keyword:677 , keyword:67 , keyword:694 , keyword:699 , keyword:810 , keyword:820 , keyword:963 ; up:recommendedName ?name0 . ?name0 up:ecName '3.6.1.-' ; up:fullName 'Energy-dependent translational throttle protein EttA' ; rdf:type up:Structured_Name . ?name1 up:fullName 'Translational regulatory factor EttA' ; rdf:type up:Structured_Name . ?gene2 skos:prefLabel 'ettA' . ?annotation3 a up:Function_Annotation ; rdfs:comment 'A translation factor that gates the progression of the 70S ribosomal initiation complex (IC, containing tRNA(fMet) in the P-site) into the translation elongation cycle by using a mechanism sensitive to the ATP/ADP ratio. Binds to the 70S ribosome E-site where it modulates the state of the translating ribosome during subunit translocation. ATP hydrolysis probably frees it from the ribosome, which can enter the elongation phase.' . ?annotation4 up:activity ?activity5 ; rdf:type up:Catalytic_Activity_Annotation . ?activity5 up:catalyticActivity <http://rdf.rhea-db.org/13065>. ?annotation6 a up:Subunit_Annotation ; rdfs:comment 'Monomer. Probably contacts ribosomal proteins L1, L5, L33 and S7, the 16S and 23S rRNA and the P-site containing tRNA(fMet).' . ?annotation7 a up:Subcellular_Location_Annotation ; rdfs:comment 'Associates with ribosomes and polysomes' . ?annotation7li8 up:cellularComponent <http://purl.uniprot.org/locations/null>. ?annotation9 a up:Domain_Annotation ; rdfs:comment 'The arm domain is inserted in the first ABC transporter domain. Probably contacts ribosomal protein L1.' . ?annotation10 a up:Domain_Annotation ; rdfs:comment 'The P-site tRNA interaction motif (PtIM domain) probably interacts with the P-site tRNA(fMet) as well as the 23S rRNA.' . ?annotation11 a up:Similarity_Annotation ; rdfs:comment 'Belongs to the ABC transporter superfamily. ABCF family. Translational throttle EttA subfamily.' . ?pfs12 up:annotation ?annotation13 . ?annotation13 faldo:begin ?pfsb14 ; faldo:end ?pfse15 ; rdf:type up:Domain_Extent_Annotation ; rdfs:comment 'ABC transporter 1' . ?pfsb14 faldo:position ?thisPositionOn16 ; rdf:type faldo:ExactPosition . ?pfse15 faldo:position ?thisPositionOn17 ; rdf:type faldo:ExactPosition . ?pfs18 up:annotation ?annotation19 . ?annotation19 faldo:begin ?pfsb20 ; faldo:end ?pfse21 ; rdf:type up:Domain_Extent_Annotation ; rdfs:comment 'ABC transporter 2' . ?pfsb20 faldo:position ?thisPositionOn22 ; rdf:type faldo:ExactPosition . ?pfse21 faldo:position ?thisPositionOn23 ; rdf:type faldo:ExactPosition . ?pfs24 up:annotation ?annotation25 . ?annotation25 faldo:begin ?pfsb26 ; faldo:end ?pfse27 ; rdf:type up:Region_Annotation ; rdfs:comment 'Arm' . ?pfsb26 faldo:position ?thisPositionOn28 ; rdf:type faldo:ExactPosition . ?pfse27 faldo:position ?thisPositionOn29 ; rdf:type faldo:ExactPosition . ?pfs30 up:annotation ?annotation31 . ?annotation31 faldo:begin ?pfsb32 ; faldo:end ?pfse33 ; rdf:type up:Region_Annotation ; rdfs:comment 'PtIM' . ?pfsb32 faldo:position ?thisPositionOn34 ; rdf:type faldo:ExactPosition . ?pfse33 faldo:position ?thisPositionOn35 ; rdf:type faldo:ExactPosition . ?pfs36 up:annotation ?annotation37 . ?annotation37 faldo:begin ?pfsb38 ; faldo:end ?pfse39 ; up:ligand ?ligand40 ; rdf:type up:Binding_Site_Annotation . ?pfsb38 faldo:position ?thisPositionOn41 ; rdf:type faldo:ExactPosition . ?pfse39 faldo:position ?thisPositionOn42 ; rdf:type faldo:ExactPosition . ?ligand40 rdfs:subClassOf chebi:30616 . ?pfs43 up:annotation ?annotation44 . ?annotation44 faldo:begin ?pfsb45 ; faldo:end ?pfse46 ; up:ligand ?ligand47 ; rdf:type up:Binding_Site_Annotation . ?pfsb45 faldo:position ?thisPositionOn48 ; rdf:type faldo:ExactPosition . ?pfse46 faldo:position ?thisPositionOn49 ; rdf:type faldo:ExactPosition . ?ligand47 rdfs:subClassOf chebi:30616 . _:297207 a rdf:Statement ; up:attribution _:297174 ; rdf:subject ?this ; rdf:predicate up:recommendedName ; rdf:object ?name0 . _:297208 a rdf:Statement ; up:attribution _:297175 ; rdf:subject ?this ; rdf:predicate up:alternativeName ; rdf:object ?name1 . _:297209 a rdf:Statement ; up:attribution _:297176 ; rdf:subject ?gene2 ; rdf:predicate up:encodedBy ; rdf:object ?gene2 . _:297210 a rdf:Statement ; up:attribution _:297177 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation3 . _:297211 a rdf:Statement ; up:attribution _:297178 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation4 . _:297212 a rdf:Statement ; up:attribution _:297179 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation6 . _:297213 a rdf:Statement ; up:attribution _:297180 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation7 . _:297214 a rdf:Statement ; up:attribution _:297181 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation9 . _:297215 a rdf:Statement ; up:attribution _:297182 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation10 . _:297216 a rdf:Statement ; up:attribution _:297183 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation11 . _:297217 a rdf:Statement ; up:attribution _:297184 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:67 . _:297218 a rdf:Statement ; up:attribution _:297185 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:963 . _:297219 a rdf:Statement ; up:attribution _:297186 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:378 . _:297220 a rdf:Statement ; up:attribution _:297187 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:547 . _:297221 a rdf:Statement ; up:attribution _:297188 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:648 . _:297222 a rdf:Statement ; up:attribution _:297189 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:677 . _:297223 a rdf:Statement ; up:attribution _:297190 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:694 . _:297224 a rdf:Statement ; up:attribution _:297191 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:699 . _:297225 a rdf:Statement ; up:attribution _:297192 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:810 . _:297226 a rdf:Statement ; up:attribution _:297193 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:820 . _:297227 a rdf:Statement ; up:attribution _:297194 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object GO:0005524 . _:297228 a rdf:Statement ; up:attribution _:297195 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object GO:0016887 . _:297229 a rdf:Statement ; up:attribution _:297196 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object GO:0005737 . _:297230 a rdf:Statement ; up:attribution _:297197 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object GO:0019843 . _:297231 a rdf:Statement ; up:attribution _:297198 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object GO:0000049 . _:297232 a rdf:Statement ; up:attribution _:297199 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object GO:0043022 . _:297233 a rdf:Statement ; up:attribution _:297200 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object GO:0045900 . _:297234 a rdf:Statement ; up:source unirule:MF_00847 ; rdf:subject ?pfs12 ; rdf:predicate up:annotation ; rdf:object ?annotation13 . _:297235 a rdf:Statement ; up:attribution _:297201 ; rdf:subject ?pfs12 ; rdf:predicate up:annotation ; rdf:object ?annotation13 . _:297236 a rdf:Statement ; up:source unirule:MF_00847 ; rdf:subject ?pfs18 ; rdf:predicate up:annotation ; rdf:object ?annotation19 . _:297237 a rdf:Statement ; up:attribution _:297202 ; rdf:subject ?pfs18 ; rdf:predicate up:annotation ; rdf:object ?annotation19 . _:297238 a rdf:Statement ; up:source unirule:MF_00847 ; rdf:subject ?pfs24 ; rdf:predicate up:annotation ; rdf:object ?annotation25 . _:297239 a rdf:Statement ; up:attribution _:297203 ; rdf:subject ?pfs24 ; rdf:predicate up:annotation ; rdf:object ?annotation25 . _:297240 a rdf:Statement ; up:source unirule:MF_00847 ; rdf:subject ?pfs30 ; rdf:predicate up:annotation ; rdf:object ?annotation31 . _:297241 a rdf:Statement ; up:attribution _:297204 ; rdf:subject ?pfs30 ; rdf:predicate up:annotation ; rdf:object ?annotation31 . _:297242 a rdf:Statement ; up:source unirule:MF_00847 ; rdf:subject ?pfs36 ; rdf:predicate up:annotation ; rdf:object ?annotation37 . _:297243 a rdf:Statement ; up:attribution _:297205 ; rdf:subject ?pfs36 ; rdf:predicate up:annotation ; rdf:object ?annotation37 . _:297244 a rdf:Statement ; up:source unirule:MF_00847 ; rdf:subject ?pfs43 ; rdf:predicate up:annotation ; rdf:object ?annotation44 . _:297245 a rdf:Statement ; up:attribution _:297206 ; rdf:subject ?pfs43 ; rdf:predicate up:annotation ; rdf:object ?annotation44 . } WHERE { #baseURI: http://purl.uniprot.org/unirule/MF_00847 #Rule MF_00847 Created by:aauchinc on:2019-11-26 Modified by:ecastro on:2023-06-01 ?this up:organism ?thisOrganism ; rdfs:seeAlso signature:MF_00847 . ?thisOrganism rdfs:subClassOf+ taxon:2 . BIND(URI(CONCAT(STR(?this), '#MF_00847a0')) AS ?name0) . BIND(URI(CONCAT(STR(?this), '#MF_00847a1')) AS ?name1) . BIND(URI(CONCAT(STR(?this), '#MF_00847a3')) AS ?annotation3) . BIND(URI(CONCAT(STR(?this), '#MF_00847a4')) AS ?annotation4) . BIND(URI(CONCAT(STR(?this), '#MF_00847a6')) AS ?annotation6) . BIND(URI(CONCAT(STR(?this), '#MF_00847a7')) AS ?annotation7) . BIND(URI(CONCAT(STR(?this), '#MF_00847a9')) AS ?annotation9) . BIND(URI(CONCAT(STR(?this), '#MF_00847a10')) AS ?annotation10) . BIND(URI(CONCAT(STR(?this), '#MF_00847a11')) AS ?annotation11) . OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch54 faldo:location ?templateMotifSequenceMatchRegionP0A9W355 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0A9W357 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP0A9W3MF_0084750 . ?templateMotifSequenceMatchRegionP0A9W355 faldo:begin ?templateMotifSequenceMatchBeginP0A9W356 . ?templateMotifSequenceMatchBeginP0A9W356 faldo:position ?templateMotifSequenceMatchBeginPositionP0A9W351 ; faldo:reference isoform:P0A9W3-1 . ?templateMotifSequenceProfileAlignmentOperationP0A9W357 edam:has_input signature:MF_00847 ; rdf:type edam:operation_0300 . ?targetMotifMatch58 faldo:location ?targetMotifMatchRegionMatch59 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0084761 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP0A9W3MF_0084752 . ?targetMotifMatchRegionMatch59 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0084760 . ?targetMotifMatchRegionMatchBeginMF_0084760 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0084753 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_0084761 edam:has_input signature:MF_00847 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0A9W3MF_0084750, 1, (STRLEN(?templateMotifCigarP0A9W3MF_0084750) - STRLEN(REPLACE(?templateMotifCigarP0A9W3MF_0084750, CONCAT('^(?:-*[^-]){', STR(((6 - ?templateMotifSequenceMatchBeginPositionP0A9W351) + 1)), '}'), '')))), '[a-z]', '')) AS ?step162) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0A9W3MF_0084752, 1, (STRLEN(?targetMotifMatchCigarP0A9W3MF_0084752) - STRLEN(REPLACE(?targetMotifMatchCigarP0A9W3MF_0084752, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step162), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0A9W3MF_0084752, 1, (STRLEN(?targetMotifMatchCigarP0A9W3MF_0084752) - STRLEN(REPLACE(?targetMotifMatchCigarP0A9W3MF_0084752, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step162), '}'), '')))), '[^-]', ''))) AS ?step263) . BIND(((?step263 + ?targetMotifMatchRegionMatchBeginPositionMF_0084753) - 1) AS ?thisPositionOn16) . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0A9W3MF_0084750, 1, (STRLEN(?templateMotifCigarP0A9W3MF_0084750) - STRLEN(REPLACE(?templateMotifCigarP0A9W3MF_0084750, CONCAT('^(?:-*[^-]){', STR(((259 - ?templateMotifSequenceMatchBeginPositionP0A9W351) + 1)), '}'), '')))), '[a-z]', '')) AS ?step164) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0A9W3MF_0084752, 1, (STRLEN(?targetMotifMatchCigarP0A9W3MF_0084752) - STRLEN(REPLACE(?targetMotifMatchCigarP0A9W3MF_0084752, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step164), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0A9W3MF_0084752, 1, (STRLEN(?targetMotifMatchCigarP0A9W3MF_0084752) - STRLEN(REPLACE(?targetMotifMatchCigarP0A9W3MF_0084752, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step164), '}'), '')))), '[^-]', ''))) AS ?step265) . BIND(((?step265 + ?targetMotifMatchRegionMatchBeginPositionMF_0084753) - 1) AS ?thisPositionOn17) . BIND(?this AS ?pfs1t66) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn16))) AS ?pfsb14) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn17))) AS ?pfse15) . FILTER ((BOUND(?thisPositionOn16) && BOUND(?thisPositionOn17))) . BIND(URI(CONCAT(STR(?this), '#MF_00847a13')) AS ?annotation13) . BIND(?this AS ?pfs12) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch71 faldo:location ?templateMotifSequenceMatchRegionP0A9W372 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0A9W374 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP0A9W3MF_0084767 . ?templateMotifSequenceMatchRegionP0A9W372 faldo:begin ?templateMotifSequenceMatchBeginP0A9W373 . ?templateMotifSequenceMatchBeginP0A9W373 faldo:position ?templateMotifSequenceMatchBeginPositionP0A9W368 ; faldo:reference isoform:P0A9W3-1 . ?templateMotifSequenceProfileAlignmentOperationP0A9W374 edam:has_input signature:MF_00847 ; rdf:type edam:operation_0300 . ?targetMotifMatch75 faldo:location ?targetMotifMatchRegionMatch76 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0084778 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP0A9W3MF_0084769 . ?targetMotifMatchRegionMatch76 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0084777 . ?targetMotifMatchRegionMatchBeginMF_0084777 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0084770 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_0084778 edam:has_input signature:MF_00847 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0A9W3MF_0084767, 1, (STRLEN(?templateMotifCigarP0A9W3MF_0084767) - STRLEN(REPLACE(?templateMotifCigarP0A9W3MF_0084767, CONCAT('^(?:-*[^-]){', STR(((324 - ?templateMotifSequenceMatchBeginPositionP0A9W368) + 1)), '}'), '')))), '[a-z]', '')) AS ?step179) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0A9W3MF_0084769, 1, (STRLEN(?targetMotifMatchCigarP0A9W3MF_0084769) - STRLEN(REPLACE(?targetMotifMatchCigarP0A9W3MF_0084769, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step179), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0A9W3MF_0084769, 1, (STRLEN(?targetMotifMatchCigarP0A9W3MF_0084769) - STRLEN(REPLACE(?targetMotifMatchCigarP0A9W3MF_0084769, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step179), '}'), '')))), '[^-]', ''))) AS ?step280) . BIND(((?step280 + ?targetMotifMatchRegionMatchBeginPositionMF_0084770) - 1) AS ?thisPositionOn22) . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0A9W3MF_0084767, 1, (STRLEN(?templateMotifCigarP0A9W3MF_0084767) - STRLEN(REPLACE(?templateMotifCigarP0A9W3MF_0084767, CONCAT('^(?:-*[^-]){', STR(((550 - ?templateMotifSequenceMatchBeginPositionP0A9W368) + 1)), '}'), '')))), '[a-z]', '')) AS ?step181) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0A9W3MF_0084769, 1, (STRLEN(?targetMotifMatchCigarP0A9W3MF_0084769) - STRLEN(REPLACE(?targetMotifMatchCigarP0A9W3MF_0084769, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step181), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0A9W3MF_0084769, 1, (STRLEN(?targetMotifMatchCigarP0A9W3MF_0084769) - STRLEN(REPLACE(?targetMotifMatchCigarP0A9W3MF_0084769, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step181), '}'), '')))), '[^-]', ''))) AS ?step282) . BIND(((?step282 + ?targetMotifMatchRegionMatchBeginPositionMF_0084770) - 1) AS ?thisPositionOn23) . BIND(?this AS ?pfs1t83) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn22))) AS ?pfsb20) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn23))) AS ?pfse21) . FILTER ((BOUND(?thisPositionOn22) && BOUND(?thisPositionOn23))) . BIND(URI(CONCAT(STR(?this), '#MF_00847a19')) AS ?annotation19) . BIND(?this AS ?pfs18) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch88 faldo:location ?templateMotifSequenceMatchRegionP0A9W389 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0A9W391 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP0A9W3MF_0084784 . ?templateMotifSequenceMatchRegionP0A9W389 faldo:begin ?templateMotifSequenceMatchBeginP0A9W390 . ?templateMotifSequenceMatchBeginP0A9W390 faldo:position ?templateMotifSequenceMatchBeginPositionP0A9W385 ; faldo:reference isoform:P0A9W3-1 . ?templateMotifSequenceProfileAlignmentOperationP0A9W391 edam:has_input signature:MF_00847 ; rdf:type edam:operation_0300 . ?targetMotifMatch92 faldo:location ?targetMotifMatchRegionMatch93 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0084795 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP0A9W3MF_0084786 . ?targetMotifMatchRegionMatch93 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0084794 . ?targetMotifMatchRegionMatchBeginMF_0084794 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0084787 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_0084795 edam:has_input signature:MF_00847 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0A9W3MF_0084784, 1, (STRLEN(?templateMotifCigarP0A9W3MF_0084784) - STRLEN(REPLACE(?templateMotifCigarP0A9W3MF_0084784, CONCAT('^(?:-*[^-]){', STR(((95 - ?templateMotifSequenceMatchBeginPositionP0A9W385) + 1)), '}'), '')))), '[a-z]', '')) AS ?step196) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0A9W3MF_0084786, 1, (STRLEN(?targetMotifMatchCigarP0A9W3MF_0084786) - STRLEN(REPLACE(?targetMotifMatchCigarP0A9W3MF_0084786, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step196), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0A9W3MF_0084786, 1, (STRLEN(?targetMotifMatchCigarP0A9W3MF_0084786) - STRLEN(REPLACE(?targetMotifMatchCigarP0A9W3MF_0084786, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step196), '}'), '')))), '[^-]', ''))) AS ?step297) . BIND(((?step297 + ?targetMotifMatchRegionMatchBeginPositionMF_0084787) - 1) AS ?thisPositionOn28) . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0A9W3MF_0084784, 1, (STRLEN(?templateMotifCigarP0A9W3MF_0084784) - STRLEN(REPLACE(?templateMotifCigarP0A9W3MF_0084784, CONCAT('^(?:-*[^-]){', STR(((139 - ?templateMotifSequenceMatchBeginPositionP0A9W385) + 1)), '}'), '')))), '[a-z]', '')) AS ?step198) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0A9W3MF_0084786, 1, (STRLEN(?targetMotifMatchCigarP0A9W3MF_0084786) - STRLEN(REPLACE(?targetMotifMatchCigarP0A9W3MF_0084786, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step198), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0A9W3MF_0084786, 1, (STRLEN(?targetMotifMatchCigarP0A9W3MF_0084786) - STRLEN(REPLACE(?targetMotifMatchCigarP0A9W3MF_0084786, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step198), '}'), '')))), '[^-]', ''))) AS ?step299) . BIND(((?step299 + ?targetMotifMatchRegionMatchBeginPositionMF_0084787) - 1) AS ?thisPositionOn29) . BIND(?this AS ?pfs1t100) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn28))) AS ?pfsb26) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn29))) AS ?pfse27) . FILTER ((BOUND(?thisPositionOn28) && BOUND(?thisPositionOn29))) . BIND(URI(CONCAT(STR(?this), '#MF_00847a25')) AS ?annotation25) . BIND(?this AS ?pfs24) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch105 faldo:location ?templateMotifSequenceMatchRegionP0A9W3106 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0A9W3108 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP0A9W3MF_00847101 . ?templateMotifSequenceMatchRegionP0A9W3106 faldo:begin ?templateMotifSequenceMatchBeginP0A9W3107 . ?templateMotifSequenceMatchBeginP0A9W3107 faldo:position ?templateMotifSequenceMatchBeginPositionP0A9W3102 ; faldo:reference isoform:P0A9W3-1 . ?templateMotifSequenceProfileAlignmentOperationP0A9W3108 edam:has_input signature:MF_00847 ; rdf:type edam:operation_0300 . ?targetMotifMatch109 faldo:location ?targetMotifMatchRegionMatch110 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00847112 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP0A9W3MF_00847103 . ?targetMotifMatchRegionMatch110 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00847111 . ?targetMotifMatchRegionMatchBeginMF_00847111 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00847104 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_00847112 edam:has_input signature:MF_00847 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0A9W3MF_00847101, 1, (STRLEN(?templateMotifCigarP0A9W3MF_00847101) - STRLEN(REPLACE(?templateMotifCigarP0A9W3MF_00847101, CONCAT('^(?:-*[^-]){', STR(((242 - ?templateMotifSequenceMatchBeginPositionP0A9W3102) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1113) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0A9W3MF_00847103, 1, (STRLEN(?targetMotifMatchCigarP0A9W3MF_00847103) - STRLEN(REPLACE(?targetMotifMatchCigarP0A9W3MF_00847103, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1113), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0A9W3MF_00847103, 1, (STRLEN(?targetMotifMatchCigarP0A9W3MF_00847103) - STRLEN(REPLACE(?targetMotifMatchCigarP0A9W3MF_00847103, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1113), '}'), '')))), '[^-]', ''))) AS ?step2114) . BIND(((?step2114 + ?targetMotifMatchRegionMatchBeginPositionMF_00847104) - 1) AS ?thisPositionOn34) . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0A9W3MF_00847101, 1, (STRLEN(?templateMotifCigarP0A9W3MF_00847101) - STRLEN(REPLACE(?templateMotifCigarP0A9W3MF_00847101, CONCAT('^(?:-*[^-]){', STR(((322 - ?templateMotifSequenceMatchBeginPositionP0A9W3102) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1115) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0A9W3MF_00847103, 1, (STRLEN(?targetMotifMatchCigarP0A9W3MF_00847103) - STRLEN(REPLACE(?targetMotifMatchCigarP0A9W3MF_00847103, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1115), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0A9W3MF_00847103, 1, (STRLEN(?targetMotifMatchCigarP0A9W3MF_00847103) - STRLEN(REPLACE(?targetMotifMatchCigarP0A9W3MF_00847103, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1115), '}'), '')))), '[^-]', ''))) AS ?step2116) . BIND(((?step2116 + ?targetMotifMatchRegionMatchBeginPositionMF_00847104) - 1) AS ?thisPositionOn35) . BIND(?this AS ?pfs1t117) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn34))) AS ?pfsb32) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn35))) AS ?pfse33) . FILTER ((BOUND(?thisPositionOn34) && BOUND(?thisPositionOn35))) . BIND(URI(CONCAT(STR(?this), '#MF_00847a31')) AS ?annotation31) . BIND(?this AS ?pfs30) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch122 faldo:location ?templateMotifSequenceMatchRegionP0A9W3123 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0A9W3125 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP0A9W3MF_00847118 . ?templateMotifSequenceMatchRegionP0A9W3123 faldo:begin ?templateMotifSequenceMatchBeginP0A9W3124 . ?templateMotifSequenceMatchBeginP0A9W3124 faldo:position ?templateMotifSequenceMatchBeginPositionP0A9W3119 ; faldo:reference isoform:P0A9W3-1 . ?templateMotifSequenceProfileAlignmentOperationP0A9W3125 edam:has_input signature:MF_00847 ; rdf:type edam:operation_0300 . ?targetMotifMatch126 faldo:location ?targetMotifMatchRegionMatch127 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00847129 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP0A9W3MF_00847120 . ?targetMotifMatchRegionMatch127 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00847128 . ?targetMotifMatchRegionMatchBeginMF_00847128 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00847121 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_00847129 edam:has_input signature:MF_00847 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0A9W3MF_00847118, 1, (STRLEN(?templateMotifCigarP0A9W3MF_00847118) - STRLEN(REPLACE(?templateMotifCigarP0A9W3MF_00847118, CONCAT('^(?:-*[^-]){', STR(((39 - ?templateMotifSequenceMatchBeginPositionP0A9W3119) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1130) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0A9W3MF_00847120, 1, (STRLEN(?targetMotifMatchCigarP0A9W3MF_00847120) - STRLEN(REPLACE(?targetMotifMatchCigarP0A9W3MF_00847120, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1130), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0A9W3MF_00847120, 1, (STRLEN(?targetMotifMatchCigarP0A9W3MF_00847120) - STRLEN(REPLACE(?targetMotifMatchCigarP0A9W3MF_00847120, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1130), '}'), '')))), '[^-]', ''))) AS ?step2131) . BIND(((?step2131 + ?targetMotifMatchRegionMatchBeginPositionMF_00847121) - 1) AS ?thisPositionOn41) . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0A9W3MF_00847118, 1, (STRLEN(?templateMotifCigarP0A9W3MF_00847118) - STRLEN(REPLACE(?templateMotifCigarP0A9W3MF_00847118, CONCAT('^(?:-*[^-]){', STR(((46 - ?templateMotifSequenceMatchBeginPositionP0A9W3119) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1132) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0A9W3MF_00847120, 1, (STRLEN(?targetMotifMatchCigarP0A9W3MF_00847120) - STRLEN(REPLACE(?targetMotifMatchCigarP0A9W3MF_00847120, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1132), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0A9W3MF_00847120, 1, (STRLEN(?targetMotifMatchCigarP0A9W3MF_00847120) - STRLEN(REPLACE(?targetMotifMatchCigarP0A9W3MF_00847120, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1132), '}'), '')))), '[^-]', ''))) AS ?step2133) . BIND(((?step2133 + ?targetMotifMatchRegionMatchBeginPositionMF_00847121) - 1) AS ?thisPositionOn42) . BIND(?this AS ?pfs1t134) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn41))) AS ?pfsb38) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn42))) AS ?pfse39) . FILTER (REGEX('G[ARNDCQEGHILKMFPSTWYVBZJUOX]NG[ATV]GK[ST]', SUBSTR(?thisSequenceValue, ?thisPositionOn41, (?thisPositionOn42 - ?thisPositionOn41)))) . BIND(URI(CONCAT(STR(?this), '#MF_00847a37')) AS ?annotation37) . BIND(?this AS ?pfs36) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch139 faldo:location ?templateMotifSequenceMatchRegionP0A9W3140 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0A9W3142 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP0A9W3MF_00847135 . ?templateMotifSequenceMatchRegionP0A9W3140 faldo:begin ?templateMotifSequenceMatchBeginP0A9W3141 . ?templateMotifSequenceMatchBeginP0A9W3141 faldo:position ?templateMotifSequenceMatchBeginPositionP0A9W3136 ; faldo:reference isoform:P0A9W3-1 . ?templateMotifSequenceProfileAlignmentOperationP0A9W3142 edam:has_input signature:MF_00847 ; rdf:type edam:operation_0300 . ?targetMotifMatch143 faldo:location ?targetMotifMatchRegionMatch144 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00847146 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP0A9W3MF_00847137 . ?targetMotifMatchRegionMatch144 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00847145 . ?targetMotifMatchRegionMatchBeginMF_00847145 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00847138 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_00847146 edam:has_input signature:MF_00847 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0A9W3MF_00847135, 1, (STRLEN(?templateMotifCigarP0A9W3MF_00847135) - STRLEN(REPLACE(?templateMotifCigarP0A9W3MF_00847135, CONCAT('^(?:-*[^-]){', STR(((356 - ?templateMotifSequenceMatchBeginPositionP0A9W3136) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1147) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0A9W3MF_00847137, 1, (STRLEN(?targetMotifMatchCigarP0A9W3MF_00847137) - STRLEN(REPLACE(?targetMotifMatchCigarP0A9W3MF_00847137, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1147), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0A9W3MF_00847137, 1, (STRLEN(?targetMotifMatchCigarP0A9W3MF_00847137) - STRLEN(REPLACE(?targetMotifMatchCigarP0A9W3MF_00847137, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1147), '}'), '')))), '[^-]', ''))) AS ?step2148) . BIND(((?step2148 + ?targetMotifMatchRegionMatchBeginPositionMF_00847138) - 1) AS ?thisPositionOn48) . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0A9W3MF_00847135, 1, (STRLEN(?templateMotifCigarP0A9W3MF_00847135) - STRLEN(REPLACE(?templateMotifCigarP0A9W3MF_00847135, CONCAT('^(?:-*[^-]){', STR(((363 - ?templateMotifSequenceMatchBeginPositionP0A9W3136) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1149) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0A9W3MF_00847137, 1, (STRLEN(?targetMotifMatchCigarP0A9W3MF_00847137) - STRLEN(REPLACE(?targetMotifMatchCigarP0A9W3MF_00847137, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1149), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0A9W3MF_00847137, 1, (STRLEN(?targetMotifMatchCigarP0A9W3MF_00847137) - STRLEN(REPLACE(?targetMotifMatchCigarP0A9W3MF_00847137, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1149), '}'), '')))), '[^-]', ''))) AS ?step2150) . BIND(((?step2150 + ?targetMotifMatchRegionMatchBeginPositionMF_00847138) - 1) AS ?thisPositionOn49) . BIND(?this AS ?pfs1t151) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn48))) AS ?pfsb45) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn49))) AS ?pfse46) . FILTER (REGEX('G[ARNDCQEGHILKMFPSTWYVBZJUOX]NG[SICAV]GK[TS]', SUBSTR(?thisSequenceValue, ?thisPositionOn48, (?thisPositionOn49 - ?thisPositionOn48)))) . BIND(URI(CONCAT(STR(?this), '#MF_00847a44')) AS ?annotation44) . BIND(?this AS ?pfs43) . } }