CONSTRUCT { _:308344 up:source unirule:MF_00863 . _:308345 up:source unirule:MF_00863 . _:308346 up:source unirule:MF_00863 . _:308347 up:source unirule:MF_00863 . _:308348 up:source unirule:MF_00863 . _:308349 up:source unirule:MF_00863 . _:308350 up:source unirule:MF_00863 . _:308351 up:source unirule:MF_00863 . _:308352 up:source unirule:MF_00863 . _:308353 up:source unirule:MF_00863 . _:308354 up:source unirule:MF_00863 . _:308355 up:source unirule:MF_00863 . _:308356 up:source unirule:MF_00863 . _:308357 up:source unirule:MF_00863 . _:308358 up:source unirule:MF_00863 . _:308359 up:source unirule:MF_00863 . _:308360 up:source unirule:MF_00863 . _:308361 up:source unirule:MF_00863 . _:308362 up:source unirule:MF_00863 . _:308363 up:source unirule:MF_00863 . _:308364 up:source unirule:MF_00863 . _:308365 up:source unirule:MF_00863 . _:308366 up:source unirule:MF_00863 . _:308367 up:source unirule:MF_00863 . _:308368 up:source unirule:MF_00863 . _:308369 up:source unirule:MF_00863 . _:308370 up:source unirule:MF_00863 . _:308371 up:source unirule:MF_00863 . _:308372 up:source unirule:MF_00863 . _:308373 up:source unirule:MF_00863 . _:308374 up:source unirule:MF_00863 . _:308375 up:source unirule:MF_00863 . _:308376 up:source unirule:MF_00863 . _:308377 up:source unirule:MF_00863 . ?this up:alternativeName ?name1 ; up:annotation ?annotation3 , ?annotation4 , ?annotation6 , ?annotation7 , ?annotation9 ; up:classifiedWith GO:0003677 , GO:0003899 , GO:0005737 , GO:0006351 , keyword:238 , keyword:240 , keyword:479 , keyword:548 , keyword:804 , keyword:808 , keyword:963 ; up:recommendedName ?name0 . ?name0 up:ecName '2.7.7.6' ; up:fullName 'DNA-directed RNA polymerase subunit Rpo1N' ; rdf:type up:Structured_Name . ?name1 up:fullName "DNA-directed RNA polymerase subunit A'" ; rdf:type up:Structured_Name . ?gene2 skos:altLabel 'rpoA1' ; skos:prefLabel 'rpo1N' . ?annotation3 a up:Function_Annotation ; rdfs:comment 'DNA-dependent RNA polymerase (RNAP) catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Forms the clamp head domain.' . ?annotation4 up:activity ?activity5 ; rdf:type up:Catalytic_Activity_Annotation . ?activity5 up:catalyticActivity <http://rdf.rhea-db.org/21248>; up:enzymeClass <http://purl.uniprot.org/enzyme/2.7.7.6>. ?annotation6 a up:Subunit_Annotation ; rdfs:comment 'Part of the RNA polymerase complex.' . ?annotation7 a up:Subcellular_Location_Annotation . ?annotation7li8 up:cellularComponent <http://purl.uniprot.org/locations/null>. ?annotation9 a up:Similarity_Annotation ; rdfs:comment "Belongs to the RNA polymerase beta' chain family." . ?case10 up:classifiedWith GO:0000287 , keyword:460 . ?case11 up:classifiedWith GO:0008270 , keyword:862 . ?pfs12 up:annotation ?annotation13 , ?annotation19 , ?annotation25 , ?annotation31 . ?annotation13 faldo:begin ?pfsb14 ; faldo:end ?pfse15 ; up:ligand ?ligand16 ; rdf:type up:Binding_Site_Annotation . ?pfsb14 faldo:position ?thisPositionOn17 ; rdf:type faldo:ExactPosition . ?pfse15 faldo:position ?thisPositionOn18 ; rdf:type faldo:ExactPosition . ?ligand16 rdfs:subClassOf chebi:29105 . ?annotation19 faldo:begin ?pfsb20 ; faldo:end ?pfse21 ; up:ligand ?ligand22 ; rdf:type up:Binding_Site_Annotation . ?pfsb20 faldo:position ?thisPositionOn23 ; rdf:type faldo:ExactPosition . ?pfse21 faldo:position ?thisPositionOn24 ; rdf:type faldo:ExactPosition . ?ligand22 rdfs:subClassOf chebi:29105 . ?annotation25 faldo:begin ?pfsb26 ; faldo:end ?pfse27 ; up:ligand ?ligand28 ; rdf:type up:Binding_Site_Annotation . ?pfsb26 faldo:position ?thisPositionOn29 ; rdf:type faldo:ExactPosition . ?pfse27 faldo:position ?thisPositionOn30 ; rdf:type faldo:ExactPosition . ?ligand28 rdfs:subClassOf chebi:29105 . ?annotation31 faldo:begin ?pfsb32 ; faldo:end ?pfse33 ; up:ligand ?ligand34 ; rdf:type up:Binding_Site_Annotation . ?pfsb32 faldo:position ?thisPositionOn35 ; rdf:type faldo:ExactPosition . ?pfse33 faldo:position ?thisPositionOn36 ; rdf:type faldo:ExactPosition . ?ligand34 rdfs:subClassOf chebi:29105 . ?pfs37 up:annotation ?annotation38 , ?annotation44 , ?annotation50 . ?annotation38 faldo:begin ?pfsb39 ; faldo:end ?pfse40 ; up:ligand ?ligand41 ; rdf:type up:Binding_Site_Annotation . ?pfsb39 faldo:position ?thisPositionOn42 ; rdf:type faldo:ExactPosition . ?pfse40 faldo:position ?thisPositionOn43 ; rdf:type faldo:ExactPosition . ?ligand41 rdfs:subClassOf chebi:18420 . ?annotation44 faldo:begin ?pfsb45 ; faldo:end ?pfse46 ; up:ligand ?ligand47 ; rdf:type up:Binding_Site_Annotation . ?pfsb45 faldo:position ?thisPositionOn48 ; rdf:type faldo:ExactPosition . ?pfse46 faldo:position ?thisPositionOn49 ; rdf:type faldo:ExactPosition . ?ligand47 rdfs:subClassOf chebi:18420 . ?annotation50 faldo:begin ?pfsb51 ; faldo:end ?pfse52 ; up:ligand ?ligand53 ; rdf:type up:Binding_Site_Annotation . ?pfsb51 faldo:position ?thisPositionOn54 ; rdf:type faldo:ExactPosition . ?pfse52 faldo:position ?thisPositionOn55 ; rdf:type faldo:ExactPosition . ?ligand53 rdfs:subClassOf chebi:18420 . ?pfs56 up:annotation ?annotation57 , ?annotation63 , ?annotation69 , ?annotation75 . ?annotation57 faldo:begin ?pfsb58 ; faldo:end ?pfse59 ; up:ligand ?ligand60 ; rdf:type up:Binding_Site_Annotation . ?pfsb58 faldo:position ?thisPositionOn61 ; rdf:type faldo:ExactPosition . ?pfse59 faldo:position ?thisPositionOn62 ; rdf:type faldo:ExactPosition . ?ligand60 rdfs:subClassOf chebi:29105 . ?annotation63 faldo:begin ?pfsb64 ; faldo:end ?pfse65 ; up:ligand ?ligand66 ; rdf:type up:Binding_Site_Annotation . ?pfsb64 faldo:position ?thisPositionOn67 ; rdf:type faldo:ExactPosition . ?pfse65 faldo:position ?thisPositionOn68 ; rdf:type faldo:ExactPosition . ?ligand66 rdfs:subClassOf chebi:29105 . ?annotation69 faldo:begin ?pfsb70 ; faldo:end ?pfse71 ; up:ligand ?ligand72 ; rdf:type up:Binding_Site_Annotation . ?pfsb70 faldo:position ?thisPositionOn73 ; rdf:type faldo:ExactPosition . ?pfse71 faldo:position ?thisPositionOn74 ; rdf:type faldo:ExactPosition . ?ligand72 rdfs:subClassOf chebi:29105 . ?annotation75 faldo:begin ?pfsb76 ; faldo:end ?pfse77 ; up:ligand ?ligand78 ; rdf:type up:Binding_Site_Annotation . ?pfsb76 faldo:position ?thisPositionOn79 ; rdf:type faldo:ExactPosition . ?pfse77 faldo:position ?thisPositionOn80 ; rdf:type faldo:ExactPosition . ?ligand78 rdfs:subClassOf chebi:29105 . _:308378 a rdf:Statement ; up:attribution _:308344 ; rdf:subject ?this ; rdf:predicate up:recommendedName ; rdf:object ?name0 . _:308379 a rdf:Statement ; up:attribution _:308345 ; rdf:subject ?this ; rdf:predicate up:alternativeName ; rdf:object ?name1 . _:308380 a rdf:Statement ; up:attribution _:308346 ; rdf:subject ?gene2 ; rdf:predicate up:encodedBy ; rdf:object ?gene2 . _:308381 a rdf:Statement ; up:attribution _:308347 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation3 . _:308382 a rdf:Statement ; up:attribution _:308348 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation4 . _:308383 a rdf:Statement ; up:attribution _:308349 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation6 . _:308384 a rdf:Statement ; up:attribution _:308350 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation7 . _:308385 a rdf:Statement ; up:attribution _:308351 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation9 . _:308386 a rdf:Statement ; up:attribution _:308352 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:963 . _:308387 a rdf:Statement ; up:attribution _:308353 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:238 . _:308388 a rdf:Statement ; up:attribution _:308354 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:240 . _:308389 a rdf:Statement ; up:attribution _:308355 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:479 . _:308390 a rdf:Statement ; up:attribution _:308356 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:548 . _:308391 a rdf:Statement ; up:attribution _:308357 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:804 . _:308392 a rdf:Statement ; up:attribution _:308358 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:808 . _:308393 a rdf:Statement ; up:attribution _:308359 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object GO:0005737 . _:308394 a rdf:Statement ; up:attribution _:308360 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object GO:0003677 . _:308395 a rdf:Statement ; up:attribution _:308361 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object GO:0003899 . _:308396 a rdf:Statement ; up:attribution _:308362 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object GO:0006351 . _:308397 a rdf:Statement ; up:attribution _:308363 ; rdf:subject ?case10 ; rdf:predicate up:classifiedWith ; rdf:object keyword:460 . _:308398 a rdf:Statement ; up:attribution _:308364 ; rdf:subject ?case10 ; rdf:predicate up:classifiedWith ; rdf:object GO:0000287 . _:308399 a rdf:Statement ; up:attribution _:308365 ; rdf:subject ?case11 ; rdf:predicate up:classifiedWith ; rdf:object keyword:862 . _:308400 a rdf:Statement ; up:attribution _:308366 ; rdf:subject ?case11 ; rdf:predicate up:classifiedWith ; rdf:object GO:0008270 . _:308401 a rdf:Statement ; up:source unirule:MF_00863 ; rdf:subject ?pfs12 ; rdf:predicate up:annotation ; rdf:object ?annotation13 . _:308402 a rdf:Statement ; up:attribution _:308367 ; rdf:subject ?pfs12 ; rdf:predicate up:annotation ; rdf:object ?annotation13 . _:308403 a rdf:Statement ; up:source unirule:MF_00863 ; rdf:subject ?pfs12 ; rdf:predicate up:annotation ; rdf:object ?annotation19 . _:308404 a rdf:Statement ; up:attribution _:308368 ; rdf:subject ?pfs12 ; rdf:predicate up:annotation ; rdf:object ?annotation19 . _:308405 a rdf:Statement ; up:source unirule:MF_00863 ; rdf:subject ?pfs12 ; rdf:predicate up:annotation ; rdf:object ?annotation25 . _:308406 a rdf:Statement ; up:attribution _:308369 ; rdf:subject ?pfs12 ; rdf:predicate up:annotation ; rdf:object ?annotation25 . _:308407 a rdf:Statement ; up:source unirule:MF_00863 ; rdf:subject ?pfs12 ; rdf:predicate up:annotation ; rdf:object ?annotation31 . _:308408 a rdf:Statement ; up:attribution _:308370 ; rdf:subject ?pfs12 ; rdf:predicate up:annotation ; rdf:object ?annotation31 . _:308409 a rdf:Statement ; up:source unirule:MF_00863 ; rdf:subject ?pfs37 ; rdf:predicate up:annotation ; rdf:object ?annotation38 . _:308410 a rdf:Statement ; up:attribution _:308371 ; rdf:subject ?pfs37 ; rdf:predicate up:annotation ; rdf:object ?annotation38 . _:308411 a rdf:Statement ; up:source unirule:MF_00863 ; rdf:subject ?pfs37 ; rdf:predicate up:annotation ; rdf:object ?annotation44 . _:308412 a rdf:Statement ; up:attribution _:308372 ; rdf:subject ?pfs37 ; rdf:predicate up:annotation ; rdf:object ?annotation44 . _:308413 a rdf:Statement ; up:source unirule:MF_00863 ; rdf:subject ?pfs37 ; rdf:predicate up:annotation ; rdf:object ?annotation50 . _:308414 a rdf:Statement ; up:attribution _:308373 ; rdf:subject ?pfs37 ; rdf:predicate up:annotation ; rdf:object ?annotation50 . _:308415 a rdf:Statement ; up:source unirule:MF_00863 ; rdf:subject ?pfs56 ; rdf:predicate up:annotation ; rdf:object ?annotation57 . _:308416 a rdf:Statement ; up:attribution _:308374 ; rdf:subject ?pfs56 ; rdf:predicate up:annotation ; rdf:object ?annotation57 . _:308417 a rdf:Statement ; up:source unirule:MF_00863 ; rdf:subject ?pfs56 ; rdf:predicate up:annotation ; rdf:object ?annotation63 . _:308418 a rdf:Statement ; up:attribution _:308375 ; rdf:subject ?pfs56 ; rdf:predicate up:annotation ; rdf:object ?annotation63 . _:308419 a rdf:Statement ; up:source unirule:MF_00863 ; rdf:subject ?pfs56 ; rdf:predicate up:annotation ; rdf:object ?annotation69 . _:308420 a rdf:Statement ; up:attribution _:308376 ; rdf:subject ?pfs56 ; rdf:predicate up:annotation ; rdf:object ?annotation69 . _:308421 a rdf:Statement ; up:source unirule:MF_00863 ; rdf:subject ?pfs56 ; rdf:predicate up:annotation ; rdf:object ?annotation75 . _:308422 a rdf:Statement ; up:attribution _:308377 ; rdf:subject ?pfs56 ; rdf:predicate up:annotation ; rdf:object ?annotation75 . } WHERE { #baseURI: http://purl.uniprot.org/unirule/MF_00863 #Rule MF_00863 Created by:? on:2021-06-18 Modified by:Catherine Rivoire on:2025-03-21 ?this up:organism ?thisOrganism ; rdfs:seeAlso signature:MF_00863 . ?thisOrganism rdfs:subClassOf+ taxon:2157 . BIND(URI(CONCAT(STR(?this), '#MF_00863a0')) AS ?name0) . BIND(URI(CONCAT(STR(?this), '#MF_00863a1')) AS ?name1) . BIND(URI(CONCAT(STR(?this), '#MF_00863a3')) AS ?annotation3) . BIND(URI(CONCAT(STR(?this), '#MF_00863a4')) AS ?annotation4) . BIND(URI(CONCAT(STR(?this), '#MF_00863a6')) AS ?annotation6) . BIND(URI(CONCAT(STR(?this), '#MF_00863a7')) AS ?annotation7) . BIND(URI(CONCAT(STR(?this), '#MF_00863a9')) AS ?annotation9) . OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch85 faldo:location ?templateMotifSequenceMatchRegionB8YB5386 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationB8YB5388 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarB8YB53MF_0086381 . ?templateMotifSequenceMatchRegionB8YB5386 faldo:begin ?templateMotifSequenceMatchBeginB8YB5387 . ?templateMotifSequenceMatchBeginB8YB5387 faldo:position ?templateMotifSequenceMatchBeginPositionB8YB5382 ; faldo:reference isoform:B8YB53-1 . ?templateMotifSequenceProfileAlignmentOperationB8YB5388 edam:has_input signature:MF_00863 ; rdf:type edam:operation_0300 . ?targetMotifMatch89 faldo:location ?targetMotifMatchRegionMatch90 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0086392 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarB8YB53MF_0086383 . ?targetMotifMatchRegionMatch90 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0086391 . ?targetMotifMatchRegionMatchBeginMF_0086391 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0086384 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_0086392 edam:has_input signature:MF_00863 ; rdf:type edam:operation_0300 . BIND(?this AS ?tagFTGRP_1) . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarB8YB53MF_0086381, 1, (STRLEN(?templateMotifCigarB8YB53MF_0086381) - STRLEN(REPLACE(?templateMotifCigarB8YB53MF_0086381, CONCAT('^(?:-*[^-]){', STR(((58 - ?templateMotifSequenceMatchBeginPositionB8YB5382) + 1)), '}'), '')))), '[a-z]', '')) AS ?step193) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarB8YB53MF_0086383, 1, (STRLEN(?targetMotifMatchCigarB8YB53MF_0086383) - STRLEN(REPLACE(?targetMotifMatchCigarB8YB53MF_0086383, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step193), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarB8YB53MF_0086383, 1, (STRLEN(?targetMotifMatchCigarB8YB53MF_0086383) - STRLEN(REPLACE(?targetMotifMatchCigarB8YB53MF_0086383, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step193), '}'), '')))), '[^-]', ''))) AS ?step294) . BIND(((?step294 + ?targetMotifMatchRegionMatchBeginPositionMF_0086384) - 1) AS ?thisPositionOn17) . BIND(?thisPositionOn17 AS ?thisPositionOn18) . BIND(?this AS ?pfs1t95) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn17))) AS ?pfsb14) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn18))) AS ?pfse15) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn17, 1) = 'C')) . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarB8YB53MF_0086381, 1, (STRLEN(?templateMotifCigarB8YB53MF_0086381) - STRLEN(REPLACE(?templateMotifCigarB8YB53MF_0086381, CONCAT('^(?:-*[^-]){', STR(((61 - ?templateMotifSequenceMatchBeginPositionB8YB5382) + 1)), '}'), '')))), '[a-z]', '')) AS ?step196) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarB8YB53MF_0086383, 1, (STRLEN(?targetMotifMatchCigarB8YB53MF_0086383) - STRLEN(REPLACE(?targetMotifMatchCigarB8YB53MF_0086383, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step196), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarB8YB53MF_0086383, 1, (STRLEN(?targetMotifMatchCigarB8YB53MF_0086383) - STRLEN(REPLACE(?targetMotifMatchCigarB8YB53MF_0086383, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step196), '}'), '')))), '[^-]', ''))) AS ?step297) . BIND(((?step297 + ?targetMotifMatchRegionMatchBeginPositionMF_0086384) - 1) AS ?thisPositionOn23) . BIND(?thisPositionOn23 AS ?thisPositionOn24) . BIND(?this AS ?pfs1t98) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn23))) AS ?pfsb20) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn24))) AS ?pfse21) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn23, 1) = 'C')) . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarB8YB53MF_0086381, 1, (STRLEN(?templateMotifCigarB8YB53MF_0086381) - STRLEN(REPLACE(?templateMotifCigarB8YB53MF_0086381, CONCAT('^(?:-*[^-]){', STR(((68 - ?templateMotifSequenceMatchBeginPositionB8YB5382) + 1)), '}'), '')))), '[a-z]', '')) AS ?step199) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarB8YB53MF_0086383, 1, (STRLEN(?targetMotifMatchCigarB8YB53MF_0086383) - STRLEN(REPLACE(?targetMotifMatchCigarB8YB53MF_0086383, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step199), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarB8YB53MF_0086383, 1, (STRLEN(?targetMotifMatchCigarB8YB53MF_0086383) - STRLEN(REPLACE(?targetMotifMatchCigarB8YB53MF_0086383, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step199), '}'), '')))), '[^-]', ''))) AS ?step2100) . BIND(((?step2100 + ?targetMotifMatchRegionMatchBeginPositionMF_0086384) - 1) AS ?thisPositionOn29) . BIND(?thisPositionOn29 AS ?thisPositionOn30) . BIND(?this AS ?pfs1t101) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn29))) AS ?pfsb26) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn30))) AS ?pfse27) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn29, 1) = 'C')) . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarB8YB53MF_0086381, 1, (STRLEN(?templateMotifCigarB8YB53MF_0086381) - STRLEN(REPLACE(?templateMotifCigarB8YB53MF_0086381, CONCAT('^(?:-*[^-]){', STR(((71 - ?templateMotifSequenceMatchBeginPositionB8YB5382) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1102) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarB8YB53MF_0086383, 1, (STRLEN(?targetMotifMatchCigarB8YB53MF_0086383) - STRLEN(REPLACE(?targetMotifMatchCigarB8YB53MF_0086383, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1102), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarB8YB53MF_0086383, 1, (STRLEN(?targetMotifMatchCigarB8YB53MF_0086383) - STRLEN(REPLACE(?targetMotifMatchCigarB8YB53MF_0086383, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1102), '}'), '')))), '[^-]', ''))) AS ?step2103) . BIND(((?step2103 + ?targetMotifMatchRegionMatchBeginPositionMF_0086384) - 1) AS ?thisPositionOn35) . BIND(?thisPositionOn35 AS ?thisPositionOn36) . BIND(?this AS ?pfs1t104) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn35))) AS ?pfsb32) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn36))) AS ?pfse33) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn35, 1) = 'H')) . BIND(?this AS ?pfs12) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch109 faldo:location ?templateMotifSequenceMatchRegionB8YB53110 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationB8YB53112 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarB8YB53MF_00863105 . ?templateMotifSequenceMatchRegionB8YB53110 faldo:begin ?templateMotifSequenceMatchBeginB8YB53111 . ?templateMotifSequenceMatchBeginB8YB53111 faldo:position ?templateMotifSequenceMatchBeginPositionB8YB53106 ; faldo:reference isoform:B8YB53-1 . ?templateMotifSequenceProfileAlignmentOperationB8YB53112 edam:has_input signature:MF_00863 ; rdf:type edam:operation_0300 . ?targetMotifMatch113 faldo:location ?targetMotifMatchRegionMatch114 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00863116 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarB8YB53MF_00863107 . ?targetMotifMatchRegionMatch114 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00863115 . ?targetMotifMatchRegionMatchBeginMF_00863115 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00863108 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_00863116 edam:has_input signature:MF_00863 ; rdf:type edam:operation_0300 . BIND(?this AS ?tagFTGRP_3) . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarB8YB53MF_00863105, 1, (STRLEN(?templateMotifCigarB8YB53MF_00863105) - STRLEN(REPLACE(?templateMotifCigarB8YB53MF_00863105, CONCAT('^(?:-*[^-]){', STR(((456 - ?templateMotifSequenceMatchBeginPositionB8YB53106) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1117) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarB8YB53MF_00863107, 1, (STRLEN(?targetMotifMatchCigarB8YB53MF_00863107) - STRLEN(REPLACE(?targetMotifMatchCigarB8YB53MF_00863107, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1117), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarB8YB53MF_00863107, 1, (STRLEN(?targetMotifMatchCigarB8YB53MF_00863107) - STRLEN(REPLACE(?targetMotifMatchCigarB8YB53MF_00863107, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1117), '}'), '')))), '[^-]', ''))) AS ?step2118) . BIND(((?step2118 + ?targetMotifMatchRegionMatchBeginPositionMF_00863108) - 1) AS ?thisPositionOn42) . BIND(?thisPositionOn42 AS ?thisPositionOn43) . BIND(?this AS ?pfs2t119) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn42))) AS ?pfsb39) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn43))) AS ?pfse40) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn42, 1) = 'D')) . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarB8YB53MF_00863105, 1, (STRLEN(?templateMotifCigarB8YB53MF_00863105) - STRLEN(REPLACE(?templateMotifCigarB8YB53MF_00863105, CONCAT('^(?:-*[^-]){', STR(((458 - ?templateMotifSequenceMatchBeginPositionB8YB53106) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1120) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarB8YB53MF_00863107, 1, (STRLEN(?targetMotifMatchCigarB8YB53MF_00863107) - STRLEN(REPLACE(?targetMotifMatchCigarB8YB53MF_00863107, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1120), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarB8YB53MF_00863107, 1, (STRLEN(?targetMotifMatchCigarB8YB53MF_00863107) - STRLEN(REPLACE(?targetMotifMatchCigarB8YB53MF_00863107, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1120), '}'), '')))), '[^-]', ''))) AS ?step2121) . BIND(((?step2121 + ?targetMotifMatchRegionMatchBeginPositionMF_00863108) - 1) AS ?thisPositionOn48) . BIND(?thisPositionOn48 AS ?thisPositionOn49) . BIND(?this AS ?pfs2t122) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn48))) AS ?pfsb45) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn49))) AS ?pfse46) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn48, 1) = 'D')) . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarB8YB53MF_00863105, 1, (STRLEN(?templateMotifCigarB8YB53MF_00863105) - STRLEN(REPLACE(?templateMotifCigarB8YB53MF_00863105, CONCAT('^(?:-*[^-]){', STR(((460 - ?templateMotifSequenceMatchBeginPositionB8YB53106) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1123) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarB8YB53MF_00863107, 1, (STRLEN(?targetMotifMatchCigarB8YB53MF_00863107) - STRLEN(REPLACE(?targetMotifMatchCigarB8YB53MF_00863107, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1123), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarB8YB53MF_00863107, 1, (STRLEN(?targetMotifMatchCigarB8YB53MF_00863107) - STRLEN(REPLACE(?targetMotifMatchCigarB8YB53MF_00863107, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1123), '}'), '')))), '[^-]', ''))) AS ?step2124) . BIND(((?step2124 + ?targetMotifMatchRegionMatchBeginPositionMF_00863108) - 1) AS ?thisPositionOn54) . BIND(?thisPositionOn54 AS ?thisPositionOn55) . BIND(?this AS ?pfs2t125) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn54))) AS ?pfsb51) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn55))) AS ?pfse52) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn54, 1) = 'D')) . BIND(?this AS ?pfs37) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch130 faldo:location ?templateMotifSequenceMatchRegionB8YB53131 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationB8YB53133 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarB8YB53MF_00863126 . ?templateMotifSequenceMatchRegionB8YB53131 faldo:begin ?templateMotifSequenceMatchBeginB8YB53132 . ?templateMotifSequenceMatchBeginB8YB53132 faldo:position ?templateMotifSequenceMatchBeginPositionB8YB53127 ; faldo:reference isoform:B8YB53-1 . ?templateMotifSequenceProfileAlignmentOperationB8YB53133 edam:has_input signature:MF_00863 ; rdf:type edam:operation_0300 . ?targetMotifMatch134 faldo:location ?targetMotifMatchRegionMatch135 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00863137 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarB8YB53MF_00863128 . ?targetMotifMatchRegionMatch135 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00863136 . ?targetMotifMatchRegionMatchBeginMF_00863136 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00863129 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_00863137 edam:has_input signature:MF_00863 ; rdf:type edam:operation_0300 . BIND(?this AS ?tagFTGRP_2) . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarB8YB53MF_00863126, 1, (STRLEN(?templateMotifCigarB8YB53MF_00863126) - STRLEN(REPLACE(?templateMotifCigarB8YB53MF_00863126, CONCAT('^(?:-*[^-]){', STR(((98 - ?templateMotifSequenceMatchBeginPositionB8YB53127) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1138) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarB8YB53MF_00863128, 1, (STRLEN(?targetMotifMatchCigarB8YB53MF_00863128) - STRLEN(REPLACE(?targetMotifMatchCigarB8YB53MF_00863128, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1138), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarB8YB53MF_00863128, 1, (STRLEN(?targetMotifMatchCigarB8YB53MF_00863128) - STRLEN(REPLACE(?targetMotifMatchCigarB8YB53MF_00863128, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1138), '}'), '')))), '[^-]', ''))) AS ?step2139) . BIND(((?step2139 + ?targetMotifMatchRegionMatchBeginPositionMF_00863129) - 1) AS ?thisPositionOn61) . BIND(?thisPositionOn61 AS ?thisPositionOn62) . BIND(?this AS ?pfs3t140) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn61))) AS ?pfsb58) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn62))) AS ?pfse59) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn61, 1) = 'C')) . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarB8YB53MF_00863126, 1, (STRLEN(?templateMotifCigarB8YB53MF_00863126) - STRLEN(REPLACE(?templateMotifCigarB8YB53MF_00863126, CONCAT('^(?:-*[^-]){', STR(((101 - ?templateMotifSequenceMatchBeginPositionB8YB53127) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1141) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarB8YB53MF_00863128, 1, (STRLEN(?targetMotifMatchCigarB8YB53MF_00863128) - STRLEN(REPLACE(?targetMotifMatchCigarB8YB53MF_00863128, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1141), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarB8YB53MF_00863128, 1, (STRLEN(?targetMotifMatchCigarB8YB53MF_00863128) - STRLEN(REPLACE(?targetMotifMatchCigarB8YB53MF_00863128, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1141), '}'), '')))), '[^-]', ''))) AS ?step2142) . BIND(((?step2142 + ?targetMotifMatchRegionMatchBeginPositionMF_00863129) - 1) AS ?thisPositionOn67) . BIND(?thisPositionOn67 AS ?thisPositionOn68) . BIND(?this AS ?pfs3t143) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn67))) AS ?pfsb64) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn68))) AS ?pfse65) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn67, 1) = 'C')) . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarB8YB53MF_00863126, 1, (STRLEN(?templateMotifCigarB8YB53MF_00863126) - STRLEN(REPLACE(?templateMotifCigarB8YB53MF_00863126, CONCAT('^(?:-*[^-]){', STR(((146 - ?templateMotifSequenceMatchBeginPositionB8YB53127) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1144) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarB8YB53MF_00863128, 1, (STRLEN(?targetMotifMatchCigarB8YB53MF_00863128) - STRLEN(REPLACE(?targetMotifMatchCigarB8YB53MF_00863128, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1144), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarB8YB53MF_00863128, 1, (STRLEN(?targetMotifMatchCigarB8YB53MF_00863128) - STRLEN(REPLACE(?targetMotifMatchCigarB8YB53MF_00863128, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1144), '}'), '')))), '[^-]', ''))) AS ?step2145) . BIND(((?step2145 + ?targetMotifMatchRegionMatchBeginPositionMF_00863129) - 1) AS ?thisPositionOn73) . BIND(?thisPositionOn73 AS ?thisPositionOn74) . BIND(?this AS ?pfs3t146) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn73))) AS ?pfsb70) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn74))) AS ?pfse71) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn73, 1) = 'C')) . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarB8YB53MF_00863126, 1, (STRLEN(?templateMotifCigarB8YB53MF_00863126) - STRLEN(REPLACE(?templateMotifCigarB8YB53MF_00863126, CONCAT('^(?:-*[^-]){', STR(((149 - ?templateMotifSequenceMatchBeginPositionB8YB53127) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1147) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarB8YB53MF_00863128, 1, (STRLEN(?targetMotifMatchCigarB8YB53MF_00863128) - STRLEN(REPLACE(?targetMotifMatchCigarB8YB53MF_00863128, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1147), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarB8YB53MF_00863128, 1, (STRLEN(?targetMotifMatchCigarB8YB53MF_00863128) - STRLEN(REPLACE(?targetMotifMatchCigarB8YB53MF_00863128, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1147), '}'), '')))), '[^-]', ''))) AS ?step2148) . BIND(((?step2148 + ?targetMotifMatchRegionMatchBeginPositionMF_00863129) - 1) AS ?thisPositionOn79) . BIND(?thisPositionOn79 AS ?thisPositionOn80) . BIND(?this AS ?pfs3t149) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn79))) AS ?pfsb76) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn80))) AS ?pfse77) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn79, 1) = 'C')) . BIND(?this AS ?pfs56) . } OPTIONAL { ?this a up:Protein . BIND(?this AS ?caseWithTag150) . } BIND(IF(BOUND(?tagFTGRP_3), ?caseWithTag150, ?UNBOUND_VARIABLE) AS ?case10) . OPTIONAL { ?this a up:Protein . BIND(?this AS ?caseWithTag151) . } BIND(IF((BOUND(?tagFTGRP_1) || BOUND(?tagFTGRP_2)), ?caseWithTag151, ?UNBOUND_VARIABLE) AS ?case11) . }