CONSTRUCT { _:349176 up:source unirule:MF_00999 . _:349177 up:source unirule:MF_00999 . _:349178 up:source unirule:MF_00999 . _:349179 up:source unirule:MF_00999 . _:349180 up:source unirule:MF_00999 . _:349181 up:source unirule:MF_00999 . _:349182 up:source unirule:MF_00999 . _:349183 up:source unirule:MF_00999 . _:349184 up:source unirule:MF_00999 . _:349185 up:source unirule:MF_00999 . _:349186 up:source unirule:MF_00999 . _:349187 up:source unirule:MF_00999 . _:349188 up:source unirule:MF_00999 . _:349189 up:source unirule:MF_00999 . _:349190 up:source unirule:MF_00999 . _:349191 up:source unirule:MF_00999 . _:349192 up:source unirule:MF_00999 . _:349193 up:source unirule:MF_00999 . _:349194 up:source unirule:MF_00999 . _:349195 up:source unirule:MF_00999 . _:349196 up:source unirule:MF_00999 . ?this up:annotation ?annotation1 , ?annotation2 , ?annotation4 ; up:classifiedWith GO:0061594 , GO:1902777 , keyword:119 , keyword:418 , keyword:547 , keyword:67 , keyword:808 ; up:recommendedName ?name0 . ?name0 up:ecName '2.7.1.184' ; up:fullName 'Sulfofructose kinase' ; up:shortName 'SF kinase' ; rdf:type up:Structured_Name . ?annotation1 a up:Function_Annotation ; rdfs:comment 'Phosphorylates 6-deoxy-6-sulfo-D-fructose (SF) to 6-deoxy-6-sulfo-D-fructose 1-phosphate (SFP).' . ?annotation2 up:activity ?activity3 ; rdf:type up:Catalytic_Activity_Annotation . ?activity3 up:catalyticActivity <http://rdf.rhea-db.org/40443>; up:enzymeClass <http://purl.uniprot.org/enzyme/2.7.1.184>. ?annotation4 a up:Similarity_Annotation ; rdfs:comment 'Belongs to the carbohydrate kinase PfkB family.' . ?pfs5 up:annotation ?annotation6 . ?annotation6 faldo:begin ?pfsb7 ; faldo:end ?pfse8 ; up:ligand ?ligand9 ; rdf:type up:Binding_Site_Annotation . ?pfsb7 faldo:position ?thisPositionOn10 ; rdf:type faldo:ExactPosition . ?pfse8 faldo:position ?thisPositionOn11 ; rdf:type faldo:ExactPosition . ?ligand9 rdfs:subClassOf chebi:77133 . ?pfs12 up:annotation ?annotation13 . ?annotation13 faldo:begin ?pfsb14 ; faldo:end ?pfse15 ; up:ligand ?ligand16 ; rdf:type up:Binding_Site_Annotation . ?pfsb14 faldo:position ?thisPositionOn17 ; rdf:type faldo:ExactPosition . ?pfse15 faldo:position ?thisPositionOn18 ; rdf:type faldo:ExactPosition . ?ligand16 rdfs:subClassOf chebi:77133 . ?pfs19 up:annotation ?annotation20 . ?annotation20 faldo:begin ?pfsb21 ; faldo:end ?pfse22 ; up:ligand ?ligand23 ; rdf:type up:Binding_Site_Annotation . ?pfsb21 faldo:position ?thisPositionOn24 ; rdf:type faldo:ExactPosition . ?pfse22 faldo:position ?thisPositionOn25 ; rdf:type faldo:ExactPosition . ?ligand23 rdfs:subClassOf chebi:77133 . ?pfs26 up:annotation ?annotation27 . ?annotation27 faldo:begin ?pfsb28 ; faldo:end ?pfse29 ; up:ligand ?ligand30 ; rdf:type up:Binding_Site_Annotation . ?pfsb28 faldo:position ?thisPositionOn31 ; rdf:type faldo:ExactPosition . ?pfse29 faldo:position ?thisPositionOn32 ; rdf:type faldo:ExactPosition . ?ligand30 rdfs:subClassOf chebi:77133 . ?pfs33 up:annotation ?annotation34 . ?annotation34 faldo:begin ?pfsb35 ; faldo:end ?pfse36 ; up:ligand ?ligand37 ; rdf:type up:Binding_Site_Annotation . ?pfsb35 faldo:position ?thisPositionOn38 ; rdf:type faldo:ExactPosition . ?pfse36 faldo:position ?thisPositionOn39 ; rdf:type faldo:ExactPosition . ?ligand37 rdfs:subClassOf chebi:77133 . ?pfs40 up:annotation ?annotation41 . ?annotation41 faldo:begin ?pfsb42 ; faldo:end ?pfse43 ; up:ligand ?ligand44 ; rdf:type up:Binding_Site_Annotation . ?pfsb42 faldo:position ?thisPositionOn45 ; rdf:type faldo:ExactPosition . ?pfse43 faldo:position ?thisPositionOn46 ; rdf:type faldo:ExactPosition . ?ligand44 rdfs:subClassOf chebi:30616 . ?pfs47 up:annotation ?annotation48 . ?annotation48 faldo:begin ?pfsb49 ; faldo:end ?pfse50 ; up:ligand ?ligand51 ; rdf:type up:Binding_Site_Annotation . ?pfsb49 faldo:position ?thisPositionOn52 ; rdf:type faldo:ExactPosition . ?pfse50 faldo:position ?thisPositionOn53 ; rdf:type faldo:ExactPosition . ?ligand51 rdfs:subClassOf chebi:30616 . ?pfs54 up:annotation ?annotation55 . ?annotation55 faldo:begin ?pfsb56 ; faldo:end ?pfse57 ; up:ligand ?ligand58 ; rdf:type up:Binding_Site_Annotation . ?pfsb56 faldo:position ?thisPositionOn59 ; rdf:type faldo:ExactPosition . ?pfse57 faldo:position ?thisPositionOn60 ; rdf:type faldo:ExactPosition . ?ligand58 rdfs:subClassOf chebi:30616 . ?pfs61 up:annotation ?annotation62 . ?annotation62 faldo:begin ?pfsb63 ; faldo:end ?pfse64 ; up:ligand ?ligand65 ; rdf:type up:Binding_Site_Annotation . ?pfsb63 faldo:position ?thisPositionOn66 ; rdf:type faldo:ExactPosition . ?pfse64 faldo:position ?thisPositionOn67 ; rdf:type faldo:ExactPosition . ?ligand65 rdfs:subClassOf chebi:30616 . ?pfs68 up:annotation ?annotation69 . ?annotation69 faldo:begin ?pfsb70 ; faldo:end ?pfse71 ; up:ligand ?ligand72 ; rdf:type up:Binding_Site_Annotation . ?pfsb70 faldo:position ?thisPositionOn73 ; rdf:type faldo:ExactPosition . ?pfse71 faldo:position ?thisPositionOn74 ; rdf:type faldo:ExactPosition . ?ligand72 rdfs:subClassOf chebi:77133 . _:349197 a rdf:Statement ; up:attribution _:349176 ; rdf:subject ?this ; rdf:predicate up:recommendedName ; rdf:object ?name0 . _:349198 a rdf:Statement ; up:attribution _:349177 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation1 . _:349199 a rdf:Statement ; up:attribution _:349178 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation2 . _:349200 a rdf:Statement ; up:attribution _:349179 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation4 . _:349201 a rdf:Statement ; up:attribution _:349180 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:67 . _:349202 a rdf:Statement ; up:attribution _:349181 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:119 . _:349203 a rdf:Statement ; up:attribution _:349182 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:418 . _:349204 a rdf:Statement ; up:attribution _:349183 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:547 . _:349205 a rdf:Statement ; up:attribution _:349184 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:808 . _:349206 a rdf:Statement ; up:attribution _:349185 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object GO:0061594 . _:349207 a rdf:Statement ; up:attribution _:349186 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object GO:1902777 . _:349208 a rdf:Statement ; up:source unirule:MF_00999 ; rdf:subject ?pfs5 ; rdf:predicate up:annotation ; rdf:object ?annotation6 . _:349209 a rdf:Statement ; up:attribution _:349187 ; rdf:subject ?pfs5 ; rdf:predicate up:annotation ; rdf:object ?annotation6 . _:349210 a rdf:Statement ; up:source unirule:MF_00999 ; rdf:subject ?pfs12 ; rdf:predicate up:annotation ; rdf:object ?annotation13 . _:349211 a rdf:Statement ; up:attribution _:349188 ; rdf:subject ?pfs12 ; rdf:predicate up:annotation ; rdf:object ?annotation13 . _:349212 a rdf:Statement ; up:source unirule:MF_00999 ; rdf:subject ?pfs19 ; rdf:predicate up:annotation ; rdf:object ?annotation20 . _:349213 a rdf:Statement ; up:attribution _:349189 ; rdf:subject ?pfs19 ; rdf:predicate up:annotation ; rdf:object ?annotation20 . _:349214 a rdf:Statement ; up:source unirule:MF_00999 ; rdf:subject ?pfs26 ; rdf:predicate up:annotation ; rdf:object ?annotation27 . _:349215 a rdf:Statement ; up:attribution _:349190 ; rdf:subject ?pfs26 ; rdf:predicate up:annotation ; rdf:object ?annotation27 . _:349216 a rdf:Statement ; up:source unirule:MF_00999 ; rdf:subject ?pfs33 ; rdf:predicate up:annotation ; rdf:object ?annotation34 . _:349217 a rdf:Statement ; up:attribution _:349191 ; rdf:subject ?pfs33 ; rdf:predicate up:annotation ; rdf:object ?annotation34 . _:349218 a rdf:Statement ; up:source unirule:MF_00999 ; rdf:subject ?pfs40 ; rdf:predicate up:annotation ; rdf:object ?annotation41 . _:349219 a rdf:Statement ; up:attribution _:349192 ; rdf:subject ?pfs40 ; rdf:predicate up:annotation ; rdf:object ?annotation41 . _:349220 a rdf:Statement ; up:source unirule:MF_00999 ; rdf:subject ?pfs47 ; rdf:predicate up:annotation ; rdf:object ?annotation48 . _:349221 a rdf:Statement ; up:attribution _:349193 ; rdf:subject ?pfs47 ; rdf:predicate up:annotation ; rdf:object ?annotation48 . _:349222 a rdf:Statement ; up:source unirule:MF_00999 ; rdf:subject ?pfs54 ; rdf:predicate up:annotation ; rdf:object ?annotation55 . _:349223 a rdf:Statement ; up:attribution _:349194 ; rdf:subject ?pfs54 ; rdf:predicate up:annotation ; rdf:object ?annotation55 . _:349224 a rdf:Statement ; up:source unirule:MF_00999 ; rdf:subject ?pfs61 ; rdf:predicate up:annotation ; rdf:object ?annotation62 . _:349225 a rdf:Statement ; up:attribution _:349195 ; rdf:subject ?pfs61 ; rdf:predicate up:annotation ; rdf:object ?annotation62 . _:349226 a rdf:Statement ; up:source unirule:MF_00999 ; rdf:subject ?pfs68 ; rdf:predicate up:annotation ; rdf:object ?annotation69 . _:349227 a rdf:Statement ; up:attribution _:349196 ; rdf:subject ?pfs68 ; rdf:predicate up:annotation ; rdf:object ?annotation69 . } WHERE { #baseURI: http://purl.uniprot.org/unirule/MF_00999 #Rule MF_00999 Created by:? on:2014-03-31 Modified by:Catherine Rivoire on:2023-07-05 ?this up:organism ?thisOrganism ; rdfs:seeAlso signature:MF_00999 . ?thisOrganism rdfs:subClassOf+ taxon:91347 . BIND(URI(CONCAT(STR(?this), '#MF_00999a0')) AS ?name0) . BIND(URI(CONCAT(STR(?this), '#MF_00999a1')) AS ?annotation1) . BIND(URI(CONCAT(STR(?this), '#MF_00999a2')) AS ?annotation2) . BIND(URI(CONCAT(STR(?this), '#MF_00999a4')) AS ?annotation4) . OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch79 faldo:location ?templateMotifSequenceMatchRegionP3214380 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP3214382 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP32143MF_0099975 . ?templateMotifSequenceMatchRegionP3214380 faldo:begin ?templateMotifSequenceMatchBeginP3214381 . ?templateMotifSequenceMatchBeginP3214381 faldo:position ?templateMotifSequenceMatchBeginPositionP3214376 ; faldo:reference isoform:P32143-1 . ?templateMotifSequenceProfileAlignmentOperationP3214382 edam:has_input signature:MF_00999 ; rdf:type edam:operation_0300 . ?targetMotifMatch83 faldo:location ?targetMotifMatchRegionMatch84 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0099986 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP32143MF_0099977 . ?targetMotifMatchRegionMatch84 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0099985 . ?targetMotifMatchRegionMatchBeginMF_0099985 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0099978 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_0099986 edam:has_input signature:MF_00999 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP32143MF_0099975, 1, (STRLEN(?templateMotifCigarP32143MF_0099975) - STRLEN(REPLACE(?templateMotifCigarP32143MF_0099975, CONCAT('^(?:-*[^-]){', STR(((13 - ?templateMotifSequenceMatchBeginPositionP3214376) + 1)), '}'), '')))), '[a-z]', '')) AS ?step187) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP32143MF_0099977, 1, (STRLEN(?targetMotifMatchCigarP32143MF_0099977) - STRLEN(REPLACE(?targetMotifMatchCigarP32143MF_0099977, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step187), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP32143MF_0099977, 1, (STRLEN(?targetMotifMatchCigarP32143MF_0099977) - STRLEN(REPLACE(?targetMotifMatchCigarP32143MF_0099977, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step187), '}'), '')))), '[^-]', ''))) AS ?step288) . BIND(((?step288 + ?targetMotifMatchRegionMatchBeginPositionMF_0099978) - 1) AS ?thisPositionOn10) . BIND(?thisPositionOn10 AS ?thisPositionOn11) . BIND(?this AS ?pfs1t89) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn10))) AS ?pfsb7) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn11))) AS ?pfse8) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn10, 1) = 'D')) . BIND(URI(CONCAT(STR(?this), '#MF_00999a6')) AS ?annotation6) . BIND(?this AS ?pfs5) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch94 faldo:location ?templateMotifSequenceMatchRegionP3214395 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP3214397 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP32143MF_0099990 . ?templateMotifSequenceMatchRegionP3214395 faldo:begin ?templateMotifSequenceMatchBeginP3214396 . ?templateMotifSequenceMatchBeginP3214396 faldo:position ?templateMotifSequenceMatchBeginPositionP3214391 ; faldo:reference isoform:P32143-1 . ?templateMotifSequenceProfileAlignmentOperationP3214397 edam:has_input signature:MF_00999 ; rdf:type edam:operation_0300 . ?targetMotifMatch98 faldo:location ?targetMotifMatchRegionMatch99 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00999101 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP32143MF_0099992 . ?targetMotifMatchRegionMatch99 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00999100 . ?targetMotifMatchRegionMatchBeginMF_00999100 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0099993 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_00999101 edam:has_input signature:MF_00999 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP32143MF_0099990, 1, (STRLEN(?templateMotifCigarP32143MF_0099990) - STRLEN(REPLACE(?templateMotifCigarP32143MF_0099990, CONCAT('^(?:-*[^-]){', STR(((27 - ?templateMotifSequenceMatchBeginPositionP3214391) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1102) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP32143MF_0099992, 1, (STRLEN(?targetMotifMatchCigarP32143MF_0099992) - STRLEN(REPLACE(?targetMotifMatchCigarP32143MF_0099992, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1102), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP32143MF_0099992, 1, (STRLEN(?targetMotifMatchCigarP32143MF_0099992) - STRLEN(REPLACE(?targetMotifMatchCigarP32143MF_0099992, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1102), '}'), '')))), '[^-]', ''))) AS ?step2103) . BIND(((?step2103 + ?targetMotifMatchRegionMatchBeginPositionMF_0099993) - 1) AS ?thisPositionOn17) . BIND(?thisPositionOn17 AS ?thisPositionOn18) . BIND(?this AS ?pfs1t104) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn17))) AS ?pfsb14) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn18))) AS ?pfse15) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn17, 1) = 'K')) . BIND(URI(CONCAT(STR(?this), '#MF_00999a13')) AS ?annotation13) . BIND(?this AS ?pfs12) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch109 faldo:location ?templateMotifSequenceMatchRegionP32143110 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP32143112 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP32143MF_00999105 . ?templateMotifSequenceMatchRegionP32143110 faldo:begin ?templateMotifSequenceMatchBeginP32143111 . ?templateMotifSequenceMatchBeginP32143111 faldo:position ?templateMotifSequenceMatchBeginPositionP32143106 ; faldo:reference isoform:P32143-1 . ?templateMotifSequenceProfileAlignmentOperationP32143112 edam:has_input signature:MF_00999 ; rdf:type edam:operation_0300 . ?targetMotifMatch113 faldo:location ?targetMotifMatchRegionMatch114 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00999116 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP32143MF_00999107 . ?targetMotifMatchRegionMatch114 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00999115 . ?targetMotifMatchRegionMatchBeginMF_00999115 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00999108 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_00999116 edam:has_input signature:MF_00999 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP32143MF_00999105, 1, (STRLEN(?templateMotifCigarP32143MF_00999105) - STRLEN(REPLACE(?templateMotifCigarP32143MF_00999105, CONCAT('^(?:-*[^-]){', STR(((39 - ?templateMotifSequenceMatchBeginPositionP32143106) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1117) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP32143MF_00999107, 1, (STRLEN(?targetMotifMatchCigarP32143MF_00999107) - STRLEN(REPLACE(?targetMotifMatchCigarP32143MF_00999107, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1117), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP32143MF_00999107, 1, (STRLEN(?targetMotifMatchCigarP32143MF_00999107) - STRLEN(REPLACE(?targetMotifMatchCigarP32143MF_00999107, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1117), '}'), '')))), '[^-]', ''))) AS ?step2118) . BIND(((?step2118 + ?targetMotifMatchRegionMatchBeginPositionMF_00999108) - 1) AS ?thisPositionOn24) . BIND(?thisPositionOn24 AS ?thisPositionOn25) . BIND(?this AS ?pfs1t119) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn24))) AS ?pfsb21) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn25))) AS ?pfse22) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn24, 1) = 'G')) . BIND(URI(CONCAT(STR(?this), '#MF_00999a20')) AS ?annotation20) . BIND(?this AS ?pfs19) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch124 faldo:location ?templateMotifSequenceMatchRegionP32143125 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP32143127 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP32143MF_00999120 . ?templateMotifSequenceMatchRegionP32143125 faldo:begin ?templateMotifSequenceMatchBeginP32143126 . ?templateMotifSequenceMatchBeginP32143126 faldo:position ?templateMotifSequenceMatchBeginPositionP32143121 ; faldo:reference isoform:P32143-1 . ?templateMotifSequenceProfileAlignmentOperationP32143127 edam:has_input signature:MF_00999 ; rdf:type edam:operation_0300 . ?targetMotifMatch128 faldo:location ?targetMotifMatchRegionMatch129 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00999131 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP32143MF_00999122 . ?targetMotifMatchRegionMatch129 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00999130 . ?targetMotifMatchRegionMatchBeginMF_00999130 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00999123 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_00999131 edam:has_input signature:MF_00999 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP32143MF_00999120, 1, (STRLEN(?templateMotifCigarP32143MF_00999120) - STRLEN(REPLACE(?templateMotifCigarP32143MF_00999120, CONCAT('^(?:-*[^-]){', STR(((95 - ?templateMotifSequenceMatchBeginPositionP32143121) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1132) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP32143MF_00999122, 1, (STRLEN(?targetMotifMatchCigarP32143MF_00999122) - STRLEN(REPLACE(?targetMotifMatchCigarP32143MF_00999122, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1132), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP32143MF_00999122, 1, (STRLEN(?targetMotifMatchCigarP32143MF_00999122) - STRLEN(REPLACE(?targetMotifMatchCigarP32143MF_00999122, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1132), '}'), '')))), '[^-]', ''))) AS ?step2133) . BIND(((?step2133 + ?targetMotifMatchRegionMatchBeginPositionMF_00999123) - 1) AS ?thisPositionOn31) . BIND(?thisPositionOn31 AS ?thisPositionOn32) . BIND(?this AS ?pfs1t134) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn31))) AS ?pfsb28) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn32))) AS ?pfse29) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn31, 1) = 'S')) . BIND(URI(CONCAT(STR(?this), '#MF_00999a27')) AS ?annotation27) . BIND(?this AS ?pfs26) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch139 faldo:location ?templateMotifSequenceMatchRegionP32143140 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP32143142 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP32143MF_00999135 . ?templateMotifSequenceMatchRegionP32143140 faldo:begin ?templateMotifSequenceMatchBeginP32143141 . ?templateMotifSequenceMatchBeginP32143141 faldo:position ?templateMotifSequenceMatchBeginPositionP32143136 ; faldo:reference isoform:P32143-1 . ?templateMotifSequenceProfileAlignmentOperationP32143142 edam:has_input signature:MF_00999 ; rdf:type edam:operation_0300 . ?targetMotifMatch143 faldo:location ?targetMotifMatchRegionMatch144 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00999146 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP32143MF_00999137 . ?targetMotifMatchRegionMatch144 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00999145 . ?targetMotifMatchRegionMatchBeginMF_00999145 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00999138 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_00999146 edam:has_input signature:MF_00999 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP32143MF_00999135, 1, (STRLEN(?templateMotifCigarP32143MF_00999135) - STRLEN(REPLACE(?templateMotifCigarP32143MF_00999135, CONCAT('^(?:-*[^-]){', STR(((138 - ?templateMotifSequenceMatchBeginPositionP32143136) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1147) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP32143MF_00999137, 1, (STRLEN(?targetMotifMatchCigarP32143MF_00999137) - STRLEN(REPLACE(?targetMotifMatchCigarP32143MF_00999137, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1147), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP32143MF_00999137, 1, (STRLEN(?targetMotifMatchCigarP32143MF_00999137) - STRLEN(REPLACE(?targetMotifMatchCigarP32143MF_00999137, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1147), '}'), '')))), '[^-]', ''))) AS ?step2148) . BIND(((?step2148 + ?targetMotifMatchRegionMatchBeginPositionMF_00999138) - 1) AS ?thisPositionOn38) . BIND(?thisPositionOn38 AS ?thisPositionOn39) . BIND(?this AS ?pfs1t149) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn38))) AS ?pfsb35) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn39))) AS ?pfse36) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn38, 1) = 'R')) . BIND(URI(CONCAT(STR(?this), '#MF_00999a34')) AS ?annotation34) . BIND(?this AS ?pfs33) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch154 faldo:location ?templateMotifSequenceMatchRegionP32143155 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP32143157 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP32143MF_00999150 . ?templateMotifSequenceMatchRegionP32143155 faldo:begin ?templateMotifSequenceMatchBeginP32143156 . ?templateMotifSequenceMatchBeginP32143156 faldo:position ?templateMotifSequenceMatchBeginPositionP32143151 ; faldo:reference isoform:P32143-1 . ?templateMotifSequenceProfileAlignmentOperationP32143157 edam:has_input signature:MF_00999 ; rdf:type edam:operation_0300 . ?targetMotifMatch158 faldo:location ?targetMotifMatchRegionMatch159 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00999161 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP32143MF_00999152 . ?targetMotifMatchRegionMatch159 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00999160 . ?targetMotifMatchRegionMatchBeginMF_00999160 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00999153 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_00999161 edam:has_input signature:MF_00999 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP32143MF_00999150, 1, (STRLEN(?templateMotifCigarP32143MF_00999150) - STRLEN(REPLACE(?templateMotifCigarP32143MF_00999150, CONCAT('^(?:-*[^-]){', STR(((212 - ?templateMotifSequenceMatchBeginPositionP32143151) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1162) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP32143MF_00999152, 1, (STRLEN(?targetMotifMatchCigarP32143MF_00999152) - STRLEN(REPLACE(?targetMotifMatchCigarP32143MF_00999152, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1162), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP32143MF_00999152, 1, (STRLEN(?targetMotifMatchCigarP32143MF_00999152) - STRLEN(REPLACE(?targetMotifMatchCigarP32143MF_00999152, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1162), '}'), '')))), '[^-]', ''))) AS ?step2163) . BIND(((?step2163 + ?targetMotifMatchRegionMatchBeginPositionMF_00999153) - 1) AS ?thisPositionOn45) . BIND(?thisPositionOn45 AS ?thisPositionOn46) . BIND(?this AS ?pfs1t164) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn45))) AS ?pfsb42) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn46))) AS ?pfse43) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn45, 1) = 'T')) . BIND(URI(CONCAT(STR(?this), '#MF_00999a41')) AS ?annotation41) . BIND(?this AS ?pfs40) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch169 faldo:location ?templateMotifSequenceMatchRegionP32143170 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP32143172 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP32143MF_00999165 . ?templateMotifSequenceMatchRegionP32143170 faldo:begin ?templateMotifSequenceMatchBeginP32143171 . ?templateMotifSequenceMatchBeginP32143171 faldo:position ?templateMotifSequenceMatchBeginPositionP32143166 ; faldo:reference isoform:P32143-1 . ?templateMotifSequenceProfileAlignmentOperationP32143172 edam:has_input signature:MF_00999 ; rdf:type edam:operation_0300 . ?targetMotifMatch173 faldo:location ?targetMotifMatchRegionMatch174 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00999176 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP32143MF_00999167 . ?targetMotifMatchRegionMatch174 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00999175 . ?targetMotifMatchRegionMatchBeginMF_00999175 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00999168 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_00999176 edam:has_input signature:MF_00999 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP32143MF_00999165, 1, (STRLEN(?templateMotifCigarP32143MF_00999165) - STRLEN(REPLACE(?templateMotifCigarP32143MF_00999165, CONCAT('^(?:-*[^-]){', STR(((214 - ?templateMotifSequenceMatchBeginPositionP32143166) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1177) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP32143MF_00999167, 1, (STRLEN(?targetMotifMatchCigarP32143MF_00999167) - STRLEN(REPLACE(?targetMotifMatchCigarP32143MF_00999167, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1177), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP32143MF_00999167, 1, (STRLEN(?targetMotifMatchCigarP32143MF_00999167) - STRLEN(REPLACE(?targetMotifMatchCigarP32143MF_00999167, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1177), '}'), '')))), '[^-]', ''))) AS ?step2178) . BIND(((?step2178 + ?targetMotifMatchRegionMatchBeginPositionMF_00999168) - 1) AS ?thisPositionOn52) . BIND(?thisPositionOn52 AS ?thisPositionOn53) . BIND(?this AS ?pfs1t179) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn52))) AS ?pfsb49) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn53))) AS ?pfse50) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn52, 1) = 'G')) . BIND(URI(CONCAT(STR(?this), '#MF_00999a48')) AS ?annotation48) . BIND(?this AS ?pfs47) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch184 faldo:location ?templateMotifSequenceMatchRegionP32143185 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP32143187 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP32143MF_00999180 . ?templateMotifSequenceMatchRegionP32143185 faldo:begin ?templateMotifSequenceMatchBeginP32143186 . ?templateMotifSequenceMatchBeginP32143186 faldo:position ?templateMotifSequenceMatchBeginPositionP32143181 ; faldo:reference isoform:P32143-1 . ?templateMotifSequenceProfileAlignmentOperationP32143187 edam:has_input signature:MF_00999 ; rdf:type edam:operation_0300 . ?targetMotifMatch188 faldo:location ?targetMotifMatchRegionMatch189 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00999191 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP32143MF_00999182 . ?targetMotifMatchRegionMatch189 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00999190 . ?targetMotifMatchRegionMatchBeginMF_00999190 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00999183 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_00999191 edam:has_input signature:MF_00999 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP32143MF_00999180, 1, (STRLEN(?templateMotifCigarP32143MF_00999180) - STRLEN(REPLACE(?templateMotifCigarP32143MF_00999180, CONCAT('^(?:-*[^-]){', STR(((217 - ?templateMotifSequenceMatchBeginPositionP32143181) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1192) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP32143MF_00999182, 1, (STRLEN(?targetMotifMatchCigarP32143MF_00999182) - STRLEN(REPLACE(?targetMotifMatchCigarP32143MF_00999182, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1192), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP32143MF_00999182, 1, (STRLEN(?targetMotifMatchCigarP32143MF_00999182) - STRLEN(REPLACE(?targetMotifMatchCigarP32143MF_00999182, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1192), '}'), '')))), '[^-]', ''))) AS ?step2193) . BIND(((?step2193 + ?targetMotifMatchRegionMatchBeginPositionMF_00999183) - 1) AS ?thisPositionOn59) . BIND(?thisPositionOn59 AS ?thisPositionOn60) . BIND(?this AS ?pfs1t194) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn59))) AS ?pfsb56) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn60))) AS ?pfse57) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn59, 1) = 'G')) . BIND(URI(CONCAT(STR(?this), '#MF_00999a55')) AS ?annotation55) . BIND(?this AS ?pfs54) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch199 faldo:location ?templateMotifSequenceMatchRegionP32143200 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP32143202 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP32143MF_00999195 . ?templateMotifSequenceMatchRegionP32143200 faldo:begin ?templateMotifSequenceMatchBeginP32143201 . ?templateMotifSequenceMatchBeginP32143201 faldo:position ?templateMotifSequenceMatchBeginPositionP32143196 ; faldo:reference isoform:P32143-1 . ?templateMotifSequenceProfileAlignmentOperationP32143202 edam:has_input signature:MF_00999 ; rdf:type edam:operation_0300 . ?targetMotifMatch203 faldo:location ?targetMotifMatchRegionMatch204 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00999206 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP32143MF_00999197 . ?targetMotifMatchRegionMatch204 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00999205 . ?targetMotifMatchRegionMatchBeginMF_00999205 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00999198 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_00999206 edam:has_input signature:MF_00999 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP32143MF_00999195, 1, (STRLEN(?templateMotifCigarP32143MF_00999195) - STRLEN(REPLACE(?templateMotifCigarP32143MF_00999195, CONCAT('^(?:-*[^-]){', STR(((243 - ?templateMotifSequenceMatchBeginPositionP32143196) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1207) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP32143MF_00999197, 1, (STRLEN(?targetMotifMatchCigarP32143MF_00999197) - STRLEN(REPLACE(?targetMotifMatchCigarP32143MF_00999197, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1207), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP32143MF_00999197, 1, (STRLEN(?targetMotifMatchCigarP32143MF_00999197) - STRLEN(REPLACE(?targetMotifMatchCigarP32143MF_00999197, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1207), '}'), '')))), '[^-]', ''))) AS ?step2208) . BIND(((?step2208 + ?targetMotifMatchRegionMatchBeginPositionMF_00999198) - 1) AS ?thisPositionOn66) . BIND(?thisPositionOn66 AS ?thisPositionOn67) . BIND(?this AS ?pfs1t209) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn66))) AS ?pfsb63) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn67))) AS ?pfse64) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn66, 1) = 'G')) . BIND(URI(CONCAT(STR(?this), '#MF_00999a62')) AS ?annotation62) . BIND(?this AS ?pfs61) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch214 faldo:location ?templateMotifSequenceMatchRegionP32143215 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP32143217 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP32143MF_00999210 . ?templateMotifSequenceMatchRegionP32143215 faldo:begin ?templateMotifSequenceMatchBeginP32143216 . ?templateMotifSequenceMatchBeginP32143216 faldo:position ?templateMotifSequenceMatchBeginPositionP32143211 ; faldo:reference isoform:P32143-1 . ?templateMotifSequenceProfileAlignmentOperationP32143217 edam:has_input signature:MF_00999 ; rdf:type edam:operation_0300 . ?targetMotifMatch218 faldo:location ?targetMotifMatchRegionMatch219 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00999221 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP32143MF_00999212 . ?targetMotifMatchRegionMatch219 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00999220 . ?targetMotifMatchRegionMatchBeginMF_00999220 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00999213 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_00999221 edam:has_input signature:MF_00999 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP32143MF_00999210, 1, (STRLEN(?templateMotifCigarP32143MF_00999210) - STRLEN(REPLACE(?templateMotifCigarP32143MF_00999210, CONCAT('^(?:-*[^-]){', STR(((244 - ?templateMotifSequenceMatchBeginPositionP32143211) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1222) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP32143MF_00999212, 1, (STRLEN(?targetMotifMatchCigarP32143MF_00999212) - STRLEN(REPLACE(?targetMotifMatchCigarP32143MF_00999212, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1222), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP32143MF_00999212, 1, (STRLEN(?targetMotifMatchCigarP32143MF_00999212) - STRLEN(REPLACE(?targetMotifMatchCigarP32143MF_00999212, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1222), '}'), '')))), '[^-]', ''))) AS ?step2223) . BIND(((?step2223 + ?targetMotifMatchRegionMatchBeginPositionMF_00999213) - 1) AS ?thisPositionOn73) . BIND(?thisPositionOn73 AS ?thisPositionOn74) . BIND(?this AS ?pfs1t224) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn73))) AS ?pfsb70) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn74))) AS ?pfse71) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn73, 1) = 'D')) . BIND(URI(CONCAT(STR(?this), '#MF_00999a69')) AS ?annotation69) . BIND(?this AS ?pfs68) . } }