CONSTRUCT { _:352956 up:source unirule:MF_01010 . _:352957 up:source unirule:MF_01010 . _:352958 up:source unirule:MF_01010 . _:352959 up:source unirule:MF_01010 . _:352960 up:source unirule:MF_01010 . _:352961 up:source unirule:MF_01010 . _:352962 up:source unirule:MF_01010 . _:352963 up:source unirule:MF_01010 . _:352964 up:source unirule:MF_01010 . _:352965 up:source unirule:MF_01010 . _:352966 up:source unirule:MF_01010 . _:352967 up:source unirule:MF_01010 . _:352968 up:source unirule:MF_01010 . _:352969 up:source unirule:MF_01010 . _:352970 up:source unirule:MF_01010 . _:352971 up:source unirule:MF_01010 . _:352972 up:source unirule:MF_01010 . _:352973 up:source unirule:MF_01010 . _:352974 up:source unirule:MF_01010 . _:352975 up:source unirule:MF_01010 . _:352976 up:source unirule:MF_01010 . _:352977 up:source unirule:MF_01010 . _:352978 up:source unirule:MF_01010 . _:352979 up:source unirule:MF_01010 . _:352980 up:source unirule:MF_01010 . _:352981 up:source unirule:MF_01010 . _:352982 up:source unirule:MF_01010 . _:352983 up:source unirule:MF_01010 . ?this up:alternativeName ?name1 ; up:annotation ?annotation3 , ?annotation4 , ?annotation6 ; up:classifiedWith GO:0031167 , GO:0070041 , keyword:489 , keyword:698 , keyword:808 , keyword:949 ; up:recommendedName ?name0 . ?name0 up:ecName '2.1.1.190' ; up:fullName '23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD' ; rdf:type up:Structured_Name . ?name1 up:fullName '23S rRNA(m5U1939)-methyltransferase' ; rdf:type up:Structured_Name . ?gene2 skos:prefLabel 'rlmD' . ?annotation3 a up:Function_Annotation ; rdfs:comment 'Catalyzes the formation of 5-methyl-uridine at position 1939 (m5U1939) in 23S rRNA.' . ?annotation4 up:activity ?activity5 ; rdf:type up:Catalytic_Activity_Annotation . ?activity5 up:catalyticActivity <http://rdf.rhea-db.org/42908>; up:enzymeClass <http://purl.uniprot.org/enzyme/2.1.1.190>. ?annotation6 a up:Similarity_Annotation ; rdfs:comment 'Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family. RlmD subfamily.' . ?case7 up:classifiedWith GO:0005506 , keyword:408 , keyword:411 , keyword:479 , keyword:4 . ?pfs8 up:annotation ?annotation9 , ?annotation15 , ?annotation21 , ?annotation27 . ?annotation9 faldo:begin ?pfsb10 ; faldo:end ?pfse11 ; up:ligand ?ligand12 ; rdf:type up:Binding_Site_Annotation . ?pfsb10 faldo:position ?thisPositionOn13 ; rdf:type faldo:ExactPosition . ?pfse11 faldo:position ?thisPositionOn14 ; rdf:type faldo:ExactPosition . ?ligand12 rdfs:subClassOf chebi:49883 . ?annotation15 faldo:begin ?pfsb16 ; faldo:end ?pfse17 ; up:ligand ?ligand18 ; rdf:type up:Binding_Site_Annotation . ?pfsb16 faldo:position ?thisPositionOn19 ; rdf:type faldo:ExactPosition . ?pfse17 faldo:position ?thisPositionOn20 ; rdf:type faldo:ExactPosition . ?ligand18 rdfs:subClassOf chebi:49883 . ?annotation21 faldo:begin ?pfsb22 ; faldo:end ?pfse23 ; up:ligand ?ligand24 ; rdf:type up:Binding_Site_Annotation . ?pfsb22 faldo:position ?thisPositionOn25 ; rdf:type faldo:ExactPosition . ?pfse23 faldo:position ?thisPositionOn26 ; rdf:type faldo:ExactPosition . ?ligand24 rdfs:subClassOf chebi:49883 . ?annotation27 faldo:begin ?pfsb28 ; faldo:end ?pfse29 ; up:ligand ?ligand30 ; rdf:type up:Binding_Site_Annotation . ?pfsb28 faldo:position ?thisPositionOn31 ; rdf:type faldo:ExactPosition . ?pfse29 faldo:position ?thisPositionOn32 ; rdf:type faldo:ExactPosition . ?ligand30 rdfs:subClassOf chebi:49883 . ?pfs33 up:annotation ?annotation34 . ?annotation34 faldo:begin ?pfsb35 ; faldo:end ?pfse36 ; rdf:type up:Active_Site_Annotation ; rdfs:comment 'Nucleophile' . ?pfsb35 faldo:position ?thisPositionOn37 ; rdf:type faldo:ExactPosition . ?pfse36 faldo:position ?thisPositionOn38 ; rdf:type faldo:ExactPosition . ?pfs39 up:annotation ?annotation40 . ?annotation40 faldo:begin ?pfsb41 ; faldo:end ?pfse42 ; up:ligand ?ligand43 ; rdf:type up:Binding_Site_Annotation . ?pfsb41 faldo:position ?thisPositionOn44 ; rdf:type faldo:ExactPosition . ?pfse42 faldo:position ?thisPositionOn45 ; rdf:type faldo:ExactPosition . ?ligand43 rdfs:subClassOf chebi:59789 . ?pfs46 up:annotation ?annotation47 . ?annotation47 faldo:begin ?pfsb48 ; faldo:end ?pfse49 ; up:ligand ?ligand50 ; rdf:type up:Binding_Site_Annotation . ?pfsb48 faldo:position ?thisPositionOn51 ; rdf:type faldo:ExactPosition . ?pfse49 faldo:position ?thisPositionOn52 ; rdf:type faldo:ExactPosition . ?ligand50 rdfs:subClassOf chebi:59789 . ?pfs53 up:annotation ?annotation54 . ?annotation54 faldo:begin ?pfsb55 ; faldo:end ?pfse56 ; up:ligand ?ligand57 ; rdf:type up:Binding_Site_Annotation . ?pfsb55 faldo:position ?thisPositionOn58 ; rdf:type faldo:ExactPosition . ?pfse56 faldo:position ?thisPositionOn59 ; rdf:type faldo:ExactPosition . ?ligand57 rdfs:subClassOf chebi:59789 . ?pfs60 up:annotation ?annotation61 . ?annotation61 faldo:begin ?pfsb62 ; faldo:end ?pfse63 ; up:ligand ?ligand64 ; rdf:type up:Binding_Site_Annotation . ?pfsb62 faldo:position ?thisPositionOn65 ; rdf:type faldo:ExactPosition . ?pfse63 faldo:position ?thisPositionOn66 ; rdf:type faldo:ExactPosition . ?ligand64 rdfs:subClassOf chebi:59789 . ?pfs67 up:annotation ?annotation68 . ?annotation68 faldo:begin ?pfsb69 ; faldo:end ?pfse70 ; up:ligand ?ligand71 ; rdf:type up:Binding_Site_Annotation . ?pfsb69 faldo:position ?thisPositionOn72 ; rdf:type faldo:ExactPosition . ?pfse70 faldo:position ?thisPositionOn73 ; rdf:type faldo:ExactPosition . ?ligand71 rdfs:subClassOf chebi:59789 . ?pfs74 up:annotation ?annotation75 . ?annotation75 faldo:begin ?pfsb76 ; faldo:end ?pfse77 ; up:ligand ?ligand78 ; rdf:type up:Binding_Site_Annotation . ?pfsb76 faldo:position ?thisPositionOn79 ; rdf:type faldo:ExactPosition . ?pfse77 faldo:position ?thisPositionOn80 ; rdf:type faldo:ExactPosition . ?ligand78 rdfs:subClassOf chebi:59789 . _:352984 a rdf:Statement ; up:attribution _:352956 ; rdf:subject ?this ; rdf:predicate up:recommendedName ; rdf:object ?name0 . _:352985 a rdf:Statement ; up:attribution _:352957 ; rdf:subject ?this ; rdf:predicate up:alternativeName ; rdf:object ?name1 . _:352986 a rdf:Statement ; up:attribution _:352958 ; rdf:subject ?gene2 ; rdf:predicate up:encodedBy ; rdf:object ?gene2 . _:352987 a rdf:Statement ; up:attribution _:352959 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation3 . _:352988 a rdf:Statement ; up:attribution _:352960 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation4 . _:352989 a rdf:Statement ; up:attribution _:352961 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation6 . _:352990 a rdf:Statement ; up:attribution _:352962 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:489 . _:352991 a rdf:Statement ; up:attribution _:352963 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:698 . _:352992 a rdf:Statement ; up:attribution _:352964 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:949 . _:352993 a rdf:Statement ; up:attribution _:352965 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:808 . _:352994 a rdf:Statement ; up:attribution _:352966 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object GO:0070041 . _:352995 a rdf:Statement ; up:attribution _:352967 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object GO:0031167 . _:352996 a rdf:Statement ; up:attribution _:352968 ; rdf:subject ?case7 ; rdf:predicate up:classifiedWith ; rdf:object keyword:4 . _:352997 a rdf:Statement ; up:attribution _:352969 ; rdf:subject ?case7 ; rdf:predicate up:classifiedWith ; rdf:object keyword:408 . _:352998 a rdf:Statement ; up:attribution _:352970 ; rdf:subject ?case7 ; rdf:predicate up:classifiedWith ; rdf:object keyword:411 . _:352999 a rdf:Statement ; up:attribution _:352971 ; rdf:subject ?case7 ; rdf:predicate up:classifiedWith ; rdf:object keyword:479 . _:353000 a rdf:Statement ; up:attribution _:352972 ; rdf:subject ?case7 ; rdf:predicate up:classifiedWith ; rdf:object GO:0005506 . _:353001 a rdf:Statement ; up:source unirule:MF_01010 ; rdf:subject ?pfs8 ; rdf:predicate up:annotation ; rdf:object ?annotation9 . _:353002 a rdf:Statement ; up:attribution _:352973 ; rdf:subject ?pfs8 ; rdf:predicate up:annotation ; rdf:object ?annotation9 . _:353003 a rdf:Statement ; up:source unirule:MF_01010 ; rdf:subject ?pfs8 ; rdf:predicate up:annotation ; rdf:object ?annotation15 . _:353004 a rdf:Statement ; up:attribution _:352974 ; rdf:subject ?pfs8 ; rdf:predicate up:annotation ; rdf:object ?annotation15 . _:353005 a rdf:Statement ; up:source unirule:MF_01010 ; rdf:subject ?pfs8 ; rdf:predicate up:annotation ; rdf:object ?annotation21 . _:353006 a rdf:Statement ; up:attribution _:352975 ; rdf:subject ?pfs8 ; rdf:predicate up:annotation ; rdf:object ?annotation21 . _:353007 a rdf:Statement ; up:source unirule:MF_01010 ; rdf:subject ?pfs8 ; rdf:predicate up:annotation ; rdf:object ?annotation27 . _:353008 a rdf:Statement ; up:attribution _:352976 ; rdf:subject ?pfs8 ; rdf:predicate up:annotation ; rdf:object ?annotation27 . _:353009 a rdf:Statement ; up:source unirule:MF_01010 ; rdf:subject ?pfs33 ; rdf:predicate up:annotation ; rdf:object ?annotation34 . _:353010 a rdf:Statement ; up:attribution _:352977 ; rdf:subject ?pfs33 ; rdf:predicate up:annotation ; rdf:object ?annotation34 . _:353011 a rdf:Statement ; up:source unirule:MF_01010 ; rdf:subject ?pfs39 ; rdf:predicate up:annotation ; rdf:object ?annotation40 . _:353012 a rdf:Statement ; up:attribution _:352978 ; rdf:subject ?pfs39 ; rdf:predicate up:annotation ; rdf:object ?annotation40 . _:353013 a rdf:Statement ; up:source unirule:MF_01010 ; rdf:subject ?pfs46 ; rdf:predicate up:annotation ; rdf:object ?annotation47 . _:353014 a rdf:Statement ; up:attribution _:352979 ; rdf:subject ?pfs46 ; rdf:predicate up:annotation ; rdf:object ?annotation47 . _:353015 a rdf:Statement ; up:source unirule:MF_01010 ; rdf:subject ?pfs53 ; rdf:predicate up:annotation ; rdf:object ?annotation54 . _:353016 a rdf:Statement ; up:attribution _:352980 ; rdf:subject ?pfs53 ; rdf:predicate up:annotation ; rdf:object ?annotation54 . _:353017 a rdf:Statement ; up:source unirule:MF_01010 ; rdf:subject ?pfs60 ; rdf:predicate up:annotation ; rdf:object ?annotation61 . _:353018 a rdf:Statement ; up:attribution _:352981 ; rdf:subject ?pfs60 ; rdf:predicate up:annotation ; rdf:object ?annotation61 . _:353019 a rdf:Statement ; up:source unirule:MF_01010 ; rdf:subject ?pfs67 ; rdf:predicate up:annotation ; rdf:object ?annotation68 . _:353020 a rdf:Statement ; up:attribution _:352982 ; rdf:subject ?pfs67 ; rdf:predicate up:annotation ; rdf:object ?annotation68 . _:353021 a rdf:Statement ; up:source unirule:MF_01010 ; rdf:subject ?pfs74 ; rdf:predicate up:annotation ; rdf:object ?annotation75 . _:353022 a rdf:Statement ; up:attribution _:352983 ; rdf:subject ?pfs74 ; rdf:predicate up:annotation ; rdf:object ?annotation75 . } WHERE { #baseURI: http://purl.uniprot.org/unirule/MF_01010 #Rule MF_01010 Created by:? on:2005-02-28 Modified by:Edouard de Castro on:2024-09-03 ?this up:organism ?thisOrganism ; rdfs:seeAlso signature:MF_01010 . ?thisOrganism rdfs:subClassOf+ taxon:1224 . BIND(URI(CONCAT(STR(?this), '#MF_01010a0')) AS ?name0) . BIND(URI(CONCAT(STR(?this), '#MF_01010a1')) AS ?name1) . BIND(URI(CONCAT(STR(?this), '#MF_01010a3')) AS ?annotation3) . BIND(URI(CONCAT(STR(?this), '#MF_01010a4')) AS ?annotation4) . BIND(URI(CONCAT(STR(?this), '#MF_01010a6')) AS ?annotation6) . OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch85 faldo:location ?templateMotifSequenceMatchRegionP5513586 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP5513588 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP55135MF_0101081 . ?templateMotifSequenceMatchRegionP5513586 faldo:begin ?templateMotifSequenceMatchBeginP5513587 . ?templateMotifSequenceMatchBeginP5513587 faldo:position ?templateMotifSequenceMatchBeginPositionP5513582 ; faldo:reference isoform:P55135-1 . ?templateMotifSequenceProfileAlignmentOperationP5513588 edam:has_input signature:MF_01010 ; rdf:type edam:operation_0300 . ?targetMotifMatch89 faldo:location ?targetMotifMatchRegionMatch90 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0101092 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP55135MF_0101083 . ?targetMotifMatchRegionMatch90 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0101091 . ?targetMotifMatchRegionMatchBeginMF_0101091 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0101084 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_0101092 edam:has_input signature:MF_01010 ; rdf:type edam:operation_0300 . BIND(?this AS ?tagFTGRP_1) . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP55135MF_0101081, 1, (STRLEN(?templateMotifCigarP55135MF_0101081) - STRLEN(REPLACE(?templateMotifCigarP55135MF_0101081, CONCAT('^(?:-*[^-]){', STR(((81 - ?templateMotifSequenceMatchBeginPositionP5513582) + 1)), '}'), '')))), '[a-z]', '')) AS ?step193) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP55135MF_0101083, 1, (STRLEN(?targetMotifMatchCigarP55135MF_0101083) - STRLEN(REPLACE(?targetMotifMatchCigarP55135MF_0101083, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step193), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP55135MF_0101083, 1, (STRLEN(?targetMotifMatchCigarP55135MF_0101083) - STRLEN(REPLACE(?targetMotifMatchCigarP55135MF_0101083, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step193), '}'), '')))), '[^-]', ''))) AS ?step294) . BIND(((?step294 + ?targetMotifMatchRegionMatchBeginPositionMF_0101084) - 1) AS ?thisPositionOn13) . BIND(?thisPositionOn13 AS ?thisPositionOn14) . BIND(?this AS ?pfs1t95) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn13))) AS ?pfsb10) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn14))) AS ?pfse11) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn13, 1) = 'C')) . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP55135MF_0101081, 1, (STRLEN(?templateMotifCigarP55135MF_0101081) - STRLEN(REPLACE(?templateMotifCigarP55135MF_0101081, CONCAT('^(?:-*[^-]){', STR(((87 - ?templateMotifSequenceMatchBeginPositionP5513582) + 1)), '}'), '')))), '[a-z]', '')) AS ?step196) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP55135MF_0101083, 1, (STRLEN(?targetMotifMatchCigarP55135MF_0101083) - STRLEN(REPLACE(?targetMotifMatchCigarP55135MF_0101083, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step196), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP55135MF_0101083, 1, (STRLEN(?targetMotifMatchCigarP55135MF_0101083) - STRLEN(REPLACE(?targetMotifMatchCigarP55135MF_0101083, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step196), '}'), '')))), '[^-]', ''))) AS ?step297) . BIND(((?step297 + ?targetMotifMatchRegionMatchBeginPositionMF_0101084) - 1) AS ?thisPositionOn19) . BIND(?thisPositionOn19 AS ?thisPositionOn20) . BIND(?this AS ?pfs1t98) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn19))) AS ?pfsb16) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn20))) AS ?pfse17) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn19, 1) = 'C')) . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP55135MF_0101081, 1, (STRLEN(?templateMotifCigarP55135MF_0101081) - STRLEN(REPLACE(?templateMotifCigarP55135MF_0101081, CONCAT('^(?:-*[^-]){', STR(((90 - ?templateMotifSequenceMatchBeginPositionP5513582) + 1)), '}'), '')))), '[a-z]', '')) AS ?step199) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP55135MF_0101083, 1, (STRLEN(?targetMotifMatchCigarP55135MF_0101083) - STRLEN(REPLACE(?targetMotifMatchCigarP55135MF_0101083, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step199), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP55135MF_0101083, 1, (STRLEN(?targetMotifMatchCigarP55135MF_0101083) - STRLEN(REPLACE(?targetMotifMatchCigarP55135MF_0101083, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step199), '}'), '')))), '[^-]', ''))) AS ?step2100) . BIND(((?step2100 + ?targetMotifMatchRegionMatchBeginPositionMF_0101084) - 1) AS ?thisPositionOn25) . BIND(?thisPositionOn25 AS ?thisPositionOn26) . BIND(?this AS ?pfs1t101) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn25))) AS ?pfsb22) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn26))) AS ?pfse23) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn25, 1) = 'C')) . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP55135MF_0101081, 1, (STRLEN(?templateMotifCigarP55135MF_0101081) - STRLEN(REPLACE(?templateMotifCigarP55135MF_0101081, CONCAT('^(?:-*[^-]){', STR(((162 - ?templateMotifSequenceMatchBeginPositionP5513582) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1102) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP55135MF_0101083, 1, (STRLEN(?targetMotifMatchCigarP55135MF_0101083) - STRLEN(REPLACE(?targetMotifMatchCigarP55135MF_0101083, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1102), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP55135MF_0101083, 1, (STRLEN(?targetMotifMatchCigarP55135MF_0101083) - STRLEN(REPLACE(?targetMotifMatchCigarP55135MF_0101083, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1102), '}'), '')))), '[^-]', ''))) AS ?step2103) . BIND(((?step2103 + ?targetMotifMatchRegionMatchBeginPositionMF_0101084) - 1) AS ?thisPositionOn31) . BIND(?thisPositionOn31 AS ?thisPositionOn32) . BIND(?this AS ?pfs1t104) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn31))) AS ?pfsb28) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn32))) AS ?pfse29) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn31, 1) = 'C')) . BIND(?this AS ?pfs8) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch109 faldo:location ?templateMotifSequenceMatchRegionP55135110 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP55135112 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP55135MF_01010105 . ?templateMotifSequenceMatchRegionP55135110 faldo:begin ?templateMotifSequenceMatchBeginP55135111 . ?templateMotifSequenceMatchBeginP55135111 faldo:position ?templateMotifSequenceMatchBeginPositionP55135106 ; faldo:reference isoform:P55135-1 . ?templateMotifSequenceProfileAlignmentOperationP55135112 edam:has_input signature:MF_01010 ; rdf:type edam:operation_0300 . ?targetMotifMatch113 faldo:location ?targetMotifMatchRegionMatch114 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01010116 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP55135MF_01010107 . ?targetMotifMatchRegionMatch114 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01010115 . ?targetMotifMatchRegionMatchBeginMF_01010115 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01010108 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_01010116 edam:has_input signature:MF_01010 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP55135MF_01010105, 1, (STRLEN(?templateMotifCigarP55135MF_01010105) - STRLEN(REPLACE(?templateMotifCigarP55135MF_01010105, CONCAT('^(?:-*[^-]){', STR(((389 - ?templateMotifSequenceMatchBeginPositionP55135106) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1117) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP55135MF_01010107, 1, (STRLEN(?targetMotifMatchCigarP55135MF_01010107) - STRLEN(REPLACE(?targetMotifMatchCigarP55135MF_01010107, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1117), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP55135MF_01010107, 1, (STRLEN(?targetMotifMatchCigarP55135MF_01010107) - STRLEN(REPLACE(?targetMotifMatchCigarP55135MF_01010107, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1117), '}'), '')))), '[^-]', ''))) AS ?step2118) . BIND(((?step2118 + ?targetMotifMatchRegionMatchBeginPositionMF_01010108) - 1) AS ?thisPositionOn37) . BIND(?thisPositionOn37 AS ?thisPositionOn38) . BIND(?this AS ?pfs2t119) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn37))) AS ?pfsb35) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn38))) AS ?pfse36) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn37, 1) = 'C')) . BIND(URI(CONCAT(STR(?this), '#MF_01010a34')) AS ?annotation34) . BIND(?this AS ?pfs33) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch124 faldo:location ?templateMotifSequenceMatchRegionP55135125 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP55135127 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP55135MF_01010120 . ?templateMotifSequenceMatchRegionP55135125 faldo:begin ?templateMotifSequenceMatchBeginP55135126 . ?templateMotifSequenceMatchBeginP55135126 faldo:position ?templateMotifSequenceMatchBeginPositionP55135121 ; faldo:reference isoform:P55135-1 . ?templateMotifSequenceProfileAlignmentOperationP55135127 edam:has_input signature:MF_01010 ; rdf:type edam:operation_0300 . ?targetMotifMatch128 faldo:location ?targetMotifMatchRegionMatch129 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01010131 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP55135MF_01010122 . ?targetMotifMatchRegionMatch129 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01010130 . ?targetMotifMatchRegionMatchBeginMF_01010130 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01010123 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_01010131 edam:has_input signature:MF_01010 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP55135MF_01010120, 1, (STRLEN(?templateMotifCigarP55135MF_01010120) - STRLEN(REPLACE(?templateMotifCigarP55135MF_01010120, CONCAT('^(?:-*[^-]){', STR(((265 - ?templateMotifSequenceMatchBeginPositionP55135121) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1132) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP55135MF_01010122, 1, (STRLEN(?targetMotifMatchCigarP55135MF_01010122) - STRLEN(REPLACE(?targetMotifMatchCigarP55135MF_01010122, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1132), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP55135MF_01010122, 1, (STRLEN(?targetMotifMatchCigarP55135MF_01010122) - STRLEN(REPLACE(?targetMotifMatchCigarP55135MF_01010122, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1132), '}'), '')))), '[^-]', ''))) AS ?step2133) . BIND(((?step2133 + ?targetMotifMatchRegionMatchBeginPositionMF_01010123) - 1) AS ?thisPositionOn44) . BIND(?thisPositionOn44 AS ?thisPositionOn45) . BIND(?this AS ?pfs2t134) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn44))) AS ?pfsb41) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn45))) AS ?pfse42) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn44, 1) = 'Q')) . BIND(URI(CONCAT(STR(?this), '#MF_01010a40')) AS ?annotation40) . BIND(?this AS ?pfs39) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch139 faldo:location ?templateMotifSequenceMatchRegionP55135140 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP55135142 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP55135MF_01010135 . ?templateMotifSequenceMatchRegionP55135140 faldo:begin ?templateMotifSequenceMatchBeginP55135141 . ?templateMotifSequenceMatchBeginP55135141 faldo:position ?templateMotifSequenceMatchBeginPositionP55135136 ; faldo:reference isoform:P55135-1 . ?templateMotifSequenceProfileAlignmentOperationP55135142 edam:has_input signature:MF_01010 ; rdf:type edam:operation_0300 . ?targetMotifMatch143 faldo:location ?targetMotifMatchRegionMatch144 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01010146 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP55135MF_01010137 . ?targetMotifMatchRegionMatch144 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01010145 . ?targetMotifMatchRegionMatchBeginMF_01010145 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01010138 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_01010146 edam:has_input signature:MF_01010 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP55135MF_01010135, 1, (STRLEN(?templateMotifCigarP55135MF_01010135) - STRLEN(REPLACE(?templateMotifCigarP55135MF_01010135, CONCAT('^(?:-*[^-]){', STR(((294 - ?templateMotifSequenceMatchBeginPositionP55135136) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1147) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP55135MF_01010137, 1, (STRLEN(?targetMotifMatchCigarP55135MF_01010137) - STRLEN(REPLACE(?targetMotifMatchCigarP55135MF_01010137, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1147), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP55135MF_01010137, 1, (STRLEN(?targetMotifMatchCigarP55135MF_01010137) - STRLEN(REPLACE(?targetMotifMatchCigarP55135MF_01010137, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1147), '}'), '')))), '[^-]', ''))) AS ?step2148) . BIND(((?step2148 + ?targetMotifMatchRegionMatchBeginPositionMF_01010138) - 1) AS ?thisPositionOn51) . BIND(?thisPositionOn51 AS ?thisPositionOn52) . BIND(?this AS ?pfs2t149) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn51))) AS ?pfsb48) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn52))) AS ?pfse49) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn51, 1) = 'F')) . BIND(URI(CONCAT(STR(?this), '#MF_01010a47')) AS ?annotation47) . BIND(?this AS ?pfs46) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch154 faldo:location ?templateMotifSequenceMatchRegionP55135155 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP55135157 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP55135MF_01010150 . ?templateMotifSequenceMatchRegionP55135155 faldo:begin ?templateMotifSequenceMatchBeginP55135156 . ?templateMotifSequenceMatchBeginP55135156 faldo:position ?templateMotifSequenceMatchBeginPositionP55135151 ; faldo:reference isoform:P55135-1 . ?templateMotifSequenceProfileAlignmentOperationP55135157 edam:has_input signature:MF_01010 ; rdf:type edam:operation_0300 . ?targetMotifMatch158 faldo:location ?targetMotifMatchRegionMatch159 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01010161 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP55135MF_01010152 . ?targetMotifMatchRegionMatch159 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01010160 . ?targetMotifMatchRegionMatchBeginMF_01010160 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01010153 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_01010161 edam:has_input signature:MF_01010 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP55135MF_01010150, 1, (STRLEN(?templateMotifCigarP55135MF_01010150) - STRLEN(REPLACE(?templateMotifCigarP55135MF_01010150, CONCAT('^(?:-*[^-]){', STR(((299 - ?templateMotifSequenceMatchBeginPositionP55135151) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1162) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP55135MF_01010152, 1, (STRLEN(?targetMotifMatchCigarP55135MF_01010152) - STRLEN(REPLACE(?targetMotifMatchCigarP55135MF_01010152, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1162), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP55135MF_01010152, 1, (STRLEN(?targetMotifMatchCigarP55135MF_01010152) - STRLEN(REPLACE(?targetMotifMatchCigarP55135MF_01010152, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1162), '}'), '')))), '[^-]', ''))) AS ?step2163) . BIND(((?step2163 + ?targetMotifMatchRegionMatchBeginPositionMF_01010153) - 1) AS ?thisPositionOn58) . BIND(?thisPositionOn58 AS ?thisPositionOn59) . BIND(?this AS ?pfs2t164) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn58))) AS ?pfsb55) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn59))) AS ?pfse56) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn58, 1) = 'N')) . BIND(URI(CONCAT(STR(?this), '#MF_01010a54')) AS ?annotation54) . BIND(?this AS ?pfs53) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch169 faldo:location ?templateMotifSequenceMatchRegionP55135170 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP55135172 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP55135MF_01010165 . ?templateMotifSequenceMatchRegionP55135170 faldo:begin ?templateMotifSequenceMatchBeginP55135171 . ?templateMotifSequenceMatchBeginP55135171 faldo:position ?templateMotifSequenceMatchBeginPositionP55135166 ; faldo:reference isoform:P55135-1 . ?templateMotifSequenceProfileAlignmentOperationP55135172 edam:has_input signature:MF_01010 ; rdf:type edam:operation_0300 . ?targetMotifMatch173 faldo:location ?targetMotifMatchRegionMatch174 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01010176 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP55135MF_01010167 . ?targetMotifMatchRegionMatch174 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01010175 . ?targetMotifMatchRegionMatchBeginMF_01010175 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01010168 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_01010176 edam:has_input signature:MF_01010 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP55135MF_01010165, 1, (STRLEN(?templateMotifCigarP55135MF_01010165) - STRLEN(REPLACE(?templateMotifCigarP55135MF_01010165, CONCAT('^(?:-*[^-]){', STR(((315 - ?templateMotifSequenceMatchBeginPositionP55135166) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1177) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP55135MF_01010167, 1, (STRLEN(?targetMotifMatchCigarP55135MF_01010167) - STRLEN(REPLACE(?targetMotifMatchCigarP55135MF_01010167, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1177), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP55135MF_01010167, 1, (STRLEN(?targetMotifMatchCigarP55135MF_01010167) - STRLEN(REPLACE(?targetMotifMatchCigarP55135MF_01010167, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1177), '}'), '')))), '[^-]', ''))) AS ?step2178) . BIND(((?step2178 + ?targetMotifMatchRegionMatchBeginPositionMF_01010168) - 1) AS ?thisPositionOn65) . BIND(?thisPositionOn65 AS ?thisPositionOn66) . BIND(?this AS ?pfs2t179) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn65))) AS ?pfsb62) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn66))) AS ?pfse63) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn65, 1) = 'E')) . BIND(URI(CONCAT(STR(?this), '#MF_01010a61')) AS ?annotation61) . BIND(?this AS ?pfs60) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch184 faldo:location ?templateMotifSequenceMatchRegionP55135185 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP55135187 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP55135MF_01010180 . ?templateMotifSequenceMatchRegionP55135185 faldo:begin ?templateMotifSequenceMatchBeginP55135186 . ?templateMotifSequenceMatchBeginP55135186 faldo:position ?templateMotifSequenceMatchBeginPositionP55135181 ; faldo:reference isoform:P55135-1 . ?templateMotifSequenceProfileAlignmentOperationP55135187 edam:has_input signature:MF_01010 ; rdf:type edam:operation_0300 . ?targetMotifMatch188 faldo:location ?targetMotifMatchRegionMatch189 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01010191 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP55135MF_01010182 . ?targetMotifMatchRegionMatch189 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01010190 . ?targetMotifMatchRegionMatchBeginMF_01010190 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01010183 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_01010191 edam:has_input signature:MF_01010 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP55135MF_01010180, 1, (STRLEN(?templateMotifCigarP55135MF_01010180) - STRLEN(REPLACE(?templateMotifCigarP55135MF_01010180, CONCAT('^(?:-*[^-]){', STR(((342 - ?templateMotifSequenceMatchBeginPositionP55135181) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1192) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP55135MF_01010182, 1, (STRLEN(?targetMotifMatchCigarP55135MF_01010182) - STRLEN(REPLACE(?targetMotifMatchCigarP55135MF_01010182, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1192), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP55135MF_01010182, 1, (STRLEN(?targetMotifMatchCigarP55135MF_01010182) - STRLEN(REPLACE(?targetMotifMatchCigarP55135MF_01010182, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1192), '}'), '')))), '[^-]', ''))) AS ?step2193) . BIND(((?step2193 + ?targetMotifMatchRegionMatchBeginPositionMF_01010183) - 1) AS ?thisPositionOn72) . BIND(?thisPositionOn72 AS ?thisPositionOn73) . BIND(?this AS ?pfs2t194) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn72))) AS ?pfsb69) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn73))) AS ?pfse70) . FILTER (REGEX('[ND]', SUBSTR(?thisSequenceValue, ?thisPositionOn72, 1))) . BIND(URI(CONCAT(STR(?this), '#MF_01010a68')) AS ?annotation68) . BIND(?this AS ?pfs67) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch199 faldo:location ?templateMotifSequenceMatchRegionP55135200 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP55135202 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP55135MF_01010195 . ?templateMotifSequenceMatchRegionP55135200 faldo:begin ?templateMotifSequenceMatchBeginP55135201 . ?templateMotifSequenceMatchBeginP55135201 faldo:position ?templateMotifSequenceMatchBeginPositionP55135196 ; faldo:reference isoform:P55135-1 . ?templateMotifSequenceProfileAlignmentOperationP55135202 edam:has_input signature:MF_01010 ; rdf:type edam:operation_0300 . ?targetMotifMatch203 faldo:location ?targetMotifMatchRegionMatch204 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01010206 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP55135MF_01010197 . ?targetMotifMatchRegionMatch204 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01010205 . ?targetMotifMatchRegionMatchBeginMF_01010205 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01010198 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_01010206 edam:has_input signature:MF_01010 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP55135MF_01010195, 1, (STRLEN(?templateMotifCigarP55135MF_01010195) - STRLEN(REPLACE(?templateMotifCigarP55135MF_01010195, CONCAT('^(?:-*[^-]){', STR(((363 - ?templateMotifSequenceMatchBeginPositionP55135196) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1207) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP55135MF_01010197, 1, (STRLEN(?targetMotifMatchCigarP55135MF_01010197) - STRLEN(REPLACE(?targetMotifMatchCigarP55135MF_01010197, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1207), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP55135MF_01010197, 1, (STRLEN(?targetMotifMatchCigarP55135MF_01010197) - STRLEN(REPLACE(?targetMotifMatchCigarP55135MF_01010197, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1207), '}'), '')))), '[^-]', ''))) AS ?step2208) . BIND(((?step2208 + ?targetMotifMatchRegionMatchBeginPositionMF_01010198) - 1) AS ?thisPositionOn79) . BIND(?thisPositionOn79 AS ?thisPositionOn80) . BIND(?this AS ?pfs2t209) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn79))) AS ?pfsb76) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn80))) AS ?pfse77) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn79, 1) = 'D')) . BIND(URI(CONCAT(STR(?this), '#MF_01010a75')) AS ?annotation75) . BIND(?this AS ?pfs74) . } OPTIONAL { ?this a up:Protein . BIND(?this AS ?caseWithTag210) . } BIND(IF(BOUND(?tagFTGRP_1), ?caseWithTag210, ?UNBOUND_VARIABLE) AS ?case7) . }