CONSTRUCT { _:362310 up:source unirule:MF_01033 . _:362311 up:source unirule:MF_01033 . _:362312 up:source unirule:MF_01033 . _:362313 up:source unirule:MF_01033 . _:362314 up:source unirule:MF_01033 . _:362315 up:source unirule:MF_01033 . _:362316 up:source unirule:MF_01033 . _:362317 up:source unirule:MF_01033 . _:362318 up:source unirule:MF_01033 . _:362319 up:source unirule:MF_01033 . _:362320 up:source unirule:MF_01033 . _:362321 up:source unirule:MF_01033 . _:362322 up:source unirule:MF_01033 . _:362323 up:source unirule:MF_01033 . _:362324 up:source unirule:MF_01033 . _:362325 up:source unirule:MF_01033 . _:362326 up:source unirule:MF_01033 . _:362327 up:source unirule:MF_01033 . _:362328 up:source unirule:MF_01033 . _:362329 up:source unirule:MF_01033 . _:362330 up:source unirule:MF_01033 . _:362331 up:source unirule:MF_01033 . _:362332 up:source unirule:MF_01033 . _:362333 up:source unirule:MF_01033 . _:362334 up:source unirule:MF_01033 . _:362335 up:source unirule:MF_01033 . _:362336 up:source unirule:MF_01033 . _:362337 up:source unirule:MF_01033 . _:362338 up:source unirule:MF_01033 . _:362339 up:source unirule:MF_01033 . _:362340 up:source unirule:MF_01033 . _:362341 up:source unirule:MF_01033 . _:362342 up:source unirule:MF_01033 . _:362343 up:source unirule:MF_01033 . ?this up:alternativeName ?name1 , ?name2 ; up:annotation ?annotation4 , ?annotation5 , ?annotation7 , ?annotation8 , ?annotation9 , ?annotation10 , ?annotation12 ; up:classifiedWith GO:0003862 , GO:0005737 , GO:0009098 , keyword:100 , keyword:28 , keyword:432 , keyword:460 , keyword:464 , keyword:479 , keyword:520 , keyword:560 , keyword:963 ; up:recommendedName ?name0 . ?name0 up:ecName '1.1.1.85' ; up:fullName '3-isopropylmalate dehydrogenase' ; rdf:type up:Structured_Name . ?name1 up:fullName '3-IPM-DH' ; rdf:type up:Structured_Name . ?name2 up:fullName 'Beta-IPM dehydrogenase' ; up:shortName 'IMDH' ; rdf:type up:Structured_Name . ?gene3 skos:prefLabel 'leuB' . ?annotation4 a up:Function_Annotation ; rdfs:comment 'Catalyzes the oxidation of 3-carboxy-2-hydroxy-4-methylpentanoate (3-isopropylmalate) to 3-carboxy-4-methyl-2-oxopentanoate. The product decarboxylates to 4-methyl-2 oxopentanoate.' . ?annotation5 up:activity ?activity6 ; rdf:type up:Catalytic_Activity_Annotation . ?activity6 up:catalyticActivity <http://rdf.rhea-db.org/32271>; up:enzymeClass <http://purl.uniprot.org/enzyme/1.1.1.85>. ?annotation7 up:cofactor chebi:18420 , chebi:29035 ; rdf:type up:Cofactor_Annotation ; rdfs:comment 'Binds 1 Mg(2+) or Mn(2+) ion per subunit.' . ?annotation8 a up:Pathway_Annotation ; rdfs:comment 'Amino-acid biosynthesis; L-leucine biosynthesis; L-leucine from 3-methyl-2-oxobutanoate: step 3/4.' . ?annotation9 a up:Subunit_Annotation ; rdfs:comment 'Homodimer.' . ?annotation10 a up:Subcellular_Location_Annotation . ?annotation10li11 up:cellularComponent <http://purl.uniprot.org/locations/null>. ?annotation12 a up:Similarity_Annotation ; rdfs:comment 'Belongs to the isocitrate and isopropylmalate dehydrogenases family. LeuB type 1 subfamily.' . ?pfs13 up:annotation ?annotation14 , ?annotation20 , ?annotation26 . ?annotation14 faldo:begin ?pfsb15 ; faldo:end ?pfse16 ; up:ligand ?ligand17 ; rdf:type up:Binding_Site_Annotation . ?pfsb15 faldo:position ?thisPositionOn18 ; rdf:type faldo:ExactPosition . ?pfse16 faldo:position ?thisPositionOn19 ; rdf:type faldo:ExactPosition . ?ligand17 rdfs:subClassOf chebi:18420 . ?annotation20 faldo:begin ?pfsb21 ; faldo:end ?pfse22 ; up:ligand ?ligand23 ; rdf:type up:Binding_Site_Annotation . ?pfsb21 faldo:position ?thisPositionOn24 ; rdf:type faldo:ExactPosition . ?pfse22 faldo:position ?thisPositionOn25 ; rdf:type faldo:ExactPosition . ?ligand23 rdfs:subClassOf chebi:18420 . ?annotation26 faldo:begin ?pfsb27 ; faldo:end ?pfse28 ; up:ligand ?ligand29 ; rdf:type up:Binding_Site_Annotation . ?pfsb27 faldo:position ?thisPositionOn30 ; rdf:type faldo:ExactPosition . ?pfse28 faldo:position ?thisPositionOn31 ; rdf:type faldo:ExactPosition . ?ligand29 rdfs:subClassOf chebi:18420 . ?pfs32 up:annotation ?annotation33 . ?annotation33 faldo:begin ?pfsb34 ; faldo:end ?pfse35 ; up:ligand ?ligand36 ; rdf:type up:Binding_Site_Annotation . ?pfsb34 faldo:position ?thisPositionOn37 ; rdf:type faldo:ExactPosition . ?pfse35 faldo:position ?thisPositionOn38 ; rdf:type faldo:ExactPosition . ?ligand36 rdfs:subClassOf chebi:57540 . ?pfs39 up:annotation ?annotation40 . ?annotation40 faldo:begin ?pfsb41 ; faldo:end ?pfse42 ; up:ligand ?ligand43 ; rdf:type up:Binding_Site_Annotation . ?pfsb41 faldo:position ?thisPositionOn44 ; rdf:type faldo:ExactPosition . ?pfse42 faldo:position ?thisPositionOn45 ; rdf:type faldo:ExactPosition . ?ligand43 rdfs:subClassOf chebi:57540 . ?pfs46 up:annotation ?annotation47 . ?annotation47 faldo:begin ?pfsb48 ; faldo:end ?pfse49 ; up:ligand ?ligand50 ; rdf:type up:Binding_Site_Annotation . ?pfsb48 faldo:position ?thisPositionOn52 ; rdf:type faldo:ExactPosition . ?pfse49 faldo:position ?thisPositionOn53 ; rdf:type faldo:ExactPosition . ?ligand50 rdfs:subClassOf ?molecule51 . ?molecule51 rdfs:label 'substrate' . ?pfs54 up:annotation ?annotation55 . ?annotation55 faldo:begin ?pfsb56 ; faldo:end ?pfse57 ; up:ligand ?ligand58 ; rdf:type up:Binding_Site_Annotation . ?pfsb56 faldo:position ?thisPositionOn60 ; rdf:type faldo:ExactPosition . ?pfse57 faldo:position ?thisPositionOn61 ; rdf:type faldo:ExactPosition . ?ligand58 rdfs:subClassOf ?molecule59 . ?molecule59 rdfs:label 'substrate' . ?pfs62 up:annotation ?annotation63 . ?annotation63 faldo:begin ?pfsb64 ; faldo:end ?pfse65 ; up:ligand ?ligand66 ; rdf:type up:Binding_Site_Annotation . ?pfsb64 faldo:position ?thisPositionOn68 ; rdf:type faldo:ExactPosition . ?pfse65 faldo:position ?thisPositionOn69 ; rdf:type faldo:ExactPosition . ?ligand66 rdfs:subClassOf ?molecule67 . ?molecule67 rdfs:label 'substrate' . ?pfs70 up:annotation ?annotation71 . ?annotation71 faldo:begin ?pfsb72 ; faldo:end ?pfse73 ; up:ligand ?ligand74 ; rdf:type up:Binding_Site_Annotation . ?pfsb72 faldo:position ?thisPositionOn76 ; rdf:type faldo:ExactPosition . ?pfse73 faldo:position ?thisPositionOn77 ; rdf:type faldo:ExactPosition . ?ligand74 rdfs:subClassOf ?molecule75 . ?molecule75 rdfs:label 'substrate' . ?pfs78 up:annotation ?annotation79 . ?annotation79 faldo:begin ?pfsb80 ; faldo:end ?pfse81 ; rdf:type up:Site_Annotation ; rdfs:comment 'Important for catalysis' . ?pfsb80 faldo:position ?thisPositionOn82 ; rdf:type faldo:ExactPosition . ?pfse81 faldo:position ?thisPositionOn83 ; rdf:type faldo:ExactPosition . ?pfs84 up:annotation ?annotation85 . ?annotation85 faldo:begin ?pfsb86 ; faldo:end ?pfse87 ; rdf:type up:Site_Annotation ; rdfs:comment 'Important for catalysis' . ?pfsb86 faldo:position ?thisPositionOn88 ; rdf:type faldo:ExactPosition . ?pfse87 faldo:position ?thisPositionOn89 ; rdf:type faldo:ExactPosition . _:362344 a rdf:Statement ; up:attribution _:362310 ; rdf:subject ?this ; rdf:predicate up:recommendedName ; rdf:object ?name0 . _:362345 a rdf:Statement ; up:attribution _:362311 ; rdf:subject ?this ; rdf:predicate up:alternativeName ; rdf:object ?name1 . _:362346 a rdf:Statement ; up:attribution _:362312 ; rdf:subject ?this ; rdf:predicate up:alternativeName ; rdf:object ?name2 . _:362347 a rdf:Statement ; up:attribution _:362313 ; rdf:subject ?gene3 ; rdf:predicate up:encodedBy ; rdf:object ?gene3 . _:362348 a rdf:Statement ; up:attribution _:362314 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation4 . _:362349 a rdf:Statement ; up:attribution _:362315 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation5 . _:362350 a rdf:Statement ; up:attribution _:362316 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation7 . _:362351 a rdf:Statement ; up:attribution _:362317 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation8 . _:362352 a rdf:Statement ; up:attribution _:362318 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation9 . _:362353 a rdf:Statement ; up:attribution _:362319 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation10 . _:362354 a rdf:Statement ; up:attribution _:362320 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation12 . _:362355 a rdf:Statement ; up:attribution _:362321 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:963 . _:362356 a rdf:Statement ; up:attribution _:362322 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:28 . _:362357 a rdf:Statement ; up:attribution _:362323 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:100 . _:362358 a rdf:Statement ; up:attribution _:362324 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:432 . _:362359 a rdf:Statement ; up:attribution _:362325 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:460 . _:362360 a rdf:Statement ; up:attribution _:362326 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:464 . _:362361 a rdf:Statement ; up:attribution _:362327 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:479 . _:362362 a rdf:Statement ; up:attribution _:362328 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:520 . _:362363 a rdf:Statement ; up:attribution _:362329 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:560 . _:362364 a rdf:Statement ; up:attribution _:362330 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object GO:0003862 . _:362365 a rdf:Statement ; up:attribution _:362331 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object GO:0009098 . _:362366 a rdf:Statement ; up:attribution _:362332 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object GO:0005737 . _:362367 a rdf:Statement ; up:source unirule:MF_01033 ; rdf:subject ?pfs13 ; rdf:predicate up:annotation ; rdf:object ?annotation14 . _:362368 a rdf:Statement ; up:attribution _:362333 ; rdf:subject ?pfs13 ; rdf:predicate up:annotation ; rdf:object ?annotation14 . _:362369 a rdf:Statement ; up:source unirule:MF_01033 ; rdf:subject ?pfs13 ; rdf:predicate up:annotation ; rdf:object ?annotation20 . _:362370 a rdf:Statement ; up:attribution _:362334 ; rdf:subject ?pfs13 ; rdf:predicate up:annotation ; rdf:object ?annotation20 . _:362371 a rdf:Statement ; up:source unirule:MF_01033 ; rdf:subject ?pfs13 ; rdf:predicate up:annotation ; rdf:object ?annotation26 . _:362372 a rdf:Statement ; up:attribution _:362335 ; rdf:subject ?pfs13 ; rdf:predicate up:annotation ; rdf:object ?annotation26 . _:362373 a rdf:Statement ; up:source unirule:MF_01033 ; rdf:subject ?pfs32 ; rdf:predicate up:annotation ; rdf:object ?annotation33 . _:362374 a rdf:Statement ; up:attribution _:362336 ; rdf:subject ?pfs32 ; rdf:predicate up:annotation ; rdf:object ?annotation33 . _:362375 a rdf:Statement ; up:source unirule:MF_01033 ; rdf:subject ?pfs39 ; rdf:predicate up:annotation ; rdf:object ?annotation40 . _:362376 a rdf:Statement ; up:attribution _:362337 ; rdf:subject ?pfs39 ; rdf:predicate up:annotation ; rdf:object ?annotation40 . _:362377 a rdf:Statement ; up:source unirule:MF_01033 ; rdf:subject ?pfs46 ; rdf:predicate up:annotation ; rdf:object ?annotation47 . _:362378 a rdf:Statement ; up:attribution _:362338 ; rdf:subject ?pfs46 ; rdf:predicate up:annotation ; rdf:object ?annotation47 . _:362379 a rdf:Statement ; up:source unirule:MF_01033 ; rdf:subject ?pfs54 ; rdf:predicate up:annotation ; rdf:object ?annotation55 . _:362380 a rdf:Statement ; up:attribution _:362339 ; rdf:subject ?pfs54 ; rdf:predicate up:annotation ; rdf:object ?annotation55 . _:362381 a rdf:Statement ; up:source unirule:MF_01033 ; rdf:subject ?pfs62 ; rdf:predicate up:annotation ; rdf:object ?annotation63 . _:362382 a rdf:Statement ; up:attribution _:362340 ; rdf:subject ?pfs62 ; rdf:predicate up:annotation ; rdf:object ?annotation63 . _:362383 a rdf:Statement ; up:source unirule:MF_01033 ; rdf:subject ?pfs70 ; rdf:predicate up:annotation ; rdf:object ?annotation71 . _:362384 a rdf:Statement ; up:attribution _:362341 ; rdf:subject ?pfs70 ; rdf:predicate up:annotation ; rdf:object ?annotation71 . _:362385 a rdf:Statement ; up:source unirule:MF_01033 ; rdf:subject ?pfs78 ; rdf:predicate up:annotation ; rdf:object ?annotation79 . _:362386 a rdf:Statement ; up:attribution _:362342 ; rdf:subject ?pfs78 ; rdf:predicate up:annotation ; rdf:object ?annotation79 . _:362387 a rdf:Statement ; up:source unirule:MF_01033 ; rdf:subject ?pfs84 ; rdf:predicate up:annotation ; rdf:object ?annotation85 . _:362388 a rdf:Statement ; up:attribution _:362343 ; rdf:subject ?pfs84 ; rdf:predicate up:annotation ; rdf:object ?annotation85 . } WHERE { #baseURI: http://purl.uniprot.org/unirule/MF_01033 #Rule MF_01033 Created by:? on:2005-02-28 Modified by:Catherine Rivoire on:2024-04-25 ?this up:organism ?thisOrganism ; rdfs:seeAlso signature:MF_01033 . ?thisOrganism rdfs:subClassOf+ taxon:2 . BIND(URI(CONCAT(STR(?this), '#MF_01033a0')) AS ?name0) . BIND(URI(CONCAT(STR(?this), '#MF_01033a1')) AS ?name1) . BIND(URI(CONCAT(STR(?this), '#MF_01033a2')) AS ?name2) . BIND(URI(CONCAT(STR(?this), '#MF_01033a4')) AS ?annotation4) . BIND(URI(CONCAT(STR(?this), '#MF_01033a5')) AS ?annotation5) . BIND(URI(CONCAT(STR(?this), '#MF_01033a7')) AS ?annotation7) . BIND(URI(CONCAT(STR(?this), '#MF_01033a8')) AS ?annotation8) . BIND(URI(CONCAT(STR(?this), '#MF_01033a9')) AS ?annotation9) . BIND(URI(CONCAT(STR(?this), '#MF_01033a10')) AS ?annotation10) . BIND(URI(CONCAT(STR(?this), '#MF_01033a12')) AS ?annotation12) . OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch94 faldo:location ?templateMotifSequenceMatchRegionQ5SIY495 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ5SIY497 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarQ5SIY4MF_0103390 . ?templateMotifSequenceMatchRegionQ5SIY495 faldo:begin ?templateMotifSequenceMatchBeginQ5SIY496 . ?templateMotifSequenceMatchBeginQ5SIY496 faldo:position ?templateMotifSequenceMatchBeginPositionQ5SIY491 ; faldo:reference isoform:Q5SIY4-1 . ?templateMotifSequenceProfileAlignmentOperationQ5SIY497 edam:has_input signature:MF_01033 ; rdf:type edam:operation_0300 . ?targetMotifMatch98 faldo:location ?targetMotifMatchRegionMatch99 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01033101 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarQ5SIY4MF_0103392 . ?targetMotifMatchRegionMatch99 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01033100 . ?targetMotifMatchRegionMatchBeginMF_01033100 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0103393 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_01033101 edam:has_input signature:MF_01033 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ5SIY4MF_0103390, 1, (STRLEN(?templateMotifCigarQ5SIY4MF_0103390) - STRLEN(REPLACE(?templateMotifCigarQ5SIY4MF_0103390, CONCAT('^(?:-*[^-]){', STR(((217 - ?templateMotifSequenceMatchBeginPositionQ5SIY491) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1102) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ5SIY4MF_0103392, 1, (STRLEN(?targetMotifMatchCigarQ5SIY4MF_0103392) - STRLEN(REPLACE(?targetMotifMatchCigarQ5SIY4MF_0103392, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1102), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ5SIY4MF_0103392, 1, (STRLEN(?targetMotifMatchCigarQ5SIY4MF_0103392) - STRLEN(REPLACE(?targetMotifMatchCigarQ5SIY4MF_0103392, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1102), '}'), '')))), '[^-]', ''))) AS ?step2103) . BIND(((?step2103 + ?targetMotifMatchRegionMatchBeginPositionMF_0103393) - 1) AS ?thisPositionOn18) . BIND(?thisPositionOn18 AS ?thisPositionOn19) . BIND(?this AS ?pfs1t104) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn18))) AS ?pfsb15) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn19))) AS ?pfse16) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn18, 1) = 'D')) . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ5SIY4MF_0103390, 1, (STRLEN(?templateMotifCigarQ5SIY4MF_0103390) - STRLEN(REPLACE(?templateMotifCigarQ5SIY4MF_0103390, CONCAT('^(?:-*[^-]){', STR(((241 - ?templateMotifSequenceMatchBeginPositionQ5SIY491) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1105) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ5SIY4MF_0103392, 1, (STRLEN(?targetMotifMatchCigarQ5SIY4MF_0103392) - STRLEN(REPLACE(?targetMotifMatchCigarQ5SIY4MF_0103392, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1105), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ5SIY4MF_0103392, 1, (STRLEN(?targetMotifMatchCigarQ5SIY4MF_0103392) - STRLEN(REPLACE(?targetMotifMatchCigarQ5SIY4MF_0103392, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1105), '}'), '')))), '[^-]', ''))) AS ?step2106) . BIND(((?step2106 + ?targetMotifMatchRegionMatchBeginPositionMF_0103393) - 1) AS ?thisPositionOn24) . BIND(?thisPositionOn24 AS ?thisPositionOn25) . BIND(?this AS ?pfs1t107) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn24))) AS ?pfsb21) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn25))) AS ?pfse22) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn24, 1) = 'D')) . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ5SIY4MF_0103390, 1, (STRLEN(?templateMotifCigarQ5SIY4MF_0103390) - STRLEN(REPLACE(?templateMotifCigarQ5SIY4MF_0103390, CONCAT('^(?:-*[^-]){', STR(((245 - ?templateMotifSequenceMatchBeginPositionQ5SIY491) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1108) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ5SIY4MF_0103392, 1, (STRLEN(?targetMotifMatchCigarQ5SIY4MF_0103392) - STRLEN(REPLACE(?targetMotifMatchCigarQ5SIY4MF_0103392, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1108), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ5SIY4MF_0103392, 1, (STRLEN(?targetMotifMatchCigarQ5SIY4MF_0103392) - STRLEN(REPLACE(?targetMotifMatchCigarQ5SIY4MF_0103392, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1108), '}'), '')))), '[^-]', ''))) AS ?step2109) . BIND(((?step2109 + ?targetMotifMatchRegionMatchBeginPositionMF_0103393) - 1) AS ?thisPositionOn30) . BIND(?thisPositionOn30 AS ?thisPositionOn31) . BIND(?this AS ?pfs1t110) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn30))) AS ?pfsb27) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn31))) AS ?pfse28) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn30, 1) = 'D')) . BIND(?this AS ?pfs13) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch115 faldo:location ?templateMotifSequenceMatchRegionQ5SIY4116 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ5SIY4118 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarQ5SIY4MF_01033111 . ?templateMotifSequenceMatchRegionQ5SIY4116 faldo:begin ?templateMotifSequenceMatchBeginQ5SIY4117 . ?templateMotifSequenceMatchBeginQ5SIY4117 faldo:position ?templateMotifSequenceMatchBeginPositionQ5SIY4112 ; faldo:reference isoform:Q5SIY4-1 . ?templateMotifSequenceProfileAlignmentOperationQ5SIY4118 edam:has_input signature:MF_01033 ; rdf:type edam:operation_0300 . ?targetMotifMatch119 faldo:location ?targetMotifMatchRegionMatch120 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01033122 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarQ5SIY4MF_01033113 . ?targetMotifMatchRegionMatch120 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01033121 . ?targetMotifMatchRegionMatchBeginMF_01033121 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01033114 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_01033122 edam:has_input signature:MF_01033 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ5SIY4MF_01033111, 1, (STRLEN(?templateMotifCigarQ5SIY4MF_01033111) - STRLEN(REPLACE(?templateMotifCigarQ5SIY4MF_01033111, CONCAT('^(?:-*[^-]){', STR(((74 - ?templateMotifSequenceMatchBeginPositionQ5SIY4112) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1123) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ5SIY4MF_01033113, 1, (STRLEN(?targetMotifMatchCigarQ5SIY4MF_01033113) - STRLEN(REPLACE(?targetMotifMatchCigarQ5SIY4MF_01033113, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1123), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ5SIY4MF_01033113, 1, (STRLEN(?targetMotifMatchCigarQ5SIY4MF_01033113) - STRLEN(REPLACE(?targetMotifMatchCigarQ5SIY4MF_01033113, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1123), '}'), '')))), '[^-]', ''))) AS ?step2124) . BIND(((?step2124 + ?targetMotifMatchRegionMatchBeginPositionMF_01033114) - 1) AS ?thisPositionOn37) . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ5SIY4MF_01033111, 1, (STRLEN(?templateMotifCigarQ5SIY4MF_01033111) - STRLEN(REPLACE(?templateMotifCigarQ5SIY4MF_01033111, CONCAT('^(?:-*[^-]){', STR(((87 - ?templateMotifSequenceMatchBeginPositionQ5SIY4112) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1125) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ5SIY4MF_01033113, 1, (STRLEN(?targetMotifMatchCigarQ5SIY4MF_01033113) - STRLEN(REPLACE(?targetMotifMatchCigarQ5SIY4MF_01033113, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1125), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ5SIY4MF_01033113, 1, (STRLEN(?targetMotifMatchCigarQ5SIY4MF_01033113) - STRLEN(REPLACE(?targetMotifMatchCigarQ5SIY4MF_01033113, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1125), '}'), '')))), '[^-]', ''))) AS ?step2126) . BIND(((?step2126 + ?targetMotifMatchRegionMatchBeginPositionMF_01033114) - 1) AS ?thisPositionOn38) . BIND(?this AS ?pfs2t127) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn37))) AS ?pfsb34) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn38))) AS ?pfse35) . FILTER (REGEX('G[PYSAEKRT][KQHTAER][ARNDCQEGHILKMFPSTWYVBZJUOX]{0,3)[WYV][ARNDCQEGHILKMFPSTWYVBZJUOX]{6,8)PE', SUBSTR(?thisSequenceValue, ?thisPositionOn37, (?thisPositionOn38 - ?thisPositionOn37)))) . BIND(URI(CONCAT(STR(?this), '#MF_01033a33')) AS ?annotation33) . BIND(?this AS ?pfs32) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch132 faldo:location ?templateMotifSequenceMatchRegionQ5SIY4133 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ5SIY4135 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarQ5SIY4MF_01033128 . ?templateMotifSequenceMatchRegionQ5SIY4133 faldo:begin ?templateMotifSequenceMatchBeginQ5SIY4134 . ?templateMotifSequenceMatchBeginQ5SIY4134 faldo:position ?templateMotifSequenceMatchBeginPositionQ5SIY4129 ; faldo:reference isoform:Q5SIY4-1 . ?templateMotifSequenceProfileAlignmentOperationQ5SIY4135 edam:has_input signature:MF_01033 ; rdf:type edam:operation_0300 . ?targetMotifMatch136 faldo:location ?targetMotifMatchRegionMatch137 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01033139 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarQ5SIY4MF_01033130 . ?targetMotifMatchRegionMatch137 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01033138 . ?targetMotifMatchRegionMatchBeginMF_01033138 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01033131 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_01033139 edam:has_input signature:MF_01033 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ5SIY4MF_01033128, 1, (STRLEN(?templateMotifCigarQ5SIY4MF_01033128) - STRLEN(REPLACE(?templateMotifCigarQ5SIY4MF_01033128, CONCAT('^(?:-*[^-]){', STR(((274 - ?templateMotifSequenceMatchBeginPositionQ5SIY4129) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1140) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ5SIY4MF_01033130, 1, (STRLEN(?targetMotifMatchCigarQ5SIY4MF_01033130) - STRLEN(REPLACE(?targetMotifMatchCigarQ5SIY4MF_01033130, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1140), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ5SIY4MF_01033130, 1, (STRLEN(?targetMotifMatchCigarQ5SIY4MF_01033130) - STRLEN(REPLACE(?targetMotifMatchCigarQ5SIY4MF_01033130, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1140), '}'), '')))), '[^-]', ''))) AS ?step2141) . BIND(((?step2141 + ?targetMotifMatchRegionMatchBeginPositionMF_01033131) - 1) AS ?thisPositionOn44) . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ5SIY4MF_01033128, 1, (STRLEN(?templateMotifCigarQ5SIY4MF_01033128) - STRLEN(REPLACE(?templateMotifCigarQ5SIY4MF_01033128, CONCAT('^(?:-*[^-]){', STR(((286 - ?templateMotifSequenceMatchBeginPositionQ5SIY4129) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1142) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ5SIY4MF_01033130, 1, (STRLEN(?targetMotifMatchCigarQ5SIY4MF_01033130) - STRLEN(REPLACE(?targetMotifMatchCigarQ5SIY4MF_01033130, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1142), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ5SIY4MF_01033130, 1, (STRLEN(?targetMotifMatchCigarQ5SIY4MF_01033130) - STRLEN(REPLACE(?targetMotifMatchCigarQ5SIY4MF_01033130, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1142), '}'), '')))), '[^-]', ''))) AS ?step2143) . BIND(((?step2143 + ?targetMotifMatchRegionMatchBeginPositionMF_01033131) - 1) AS ?thisPositionOn45) . BIND(?this AS ?pfs2t144) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn44))) AS ?pfsb41) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn45))) AS ?pfse42) . FILTER (REGEX('GSAP[DNT][IL][ARNDCQEGHILKMFPSTWYVBZJUOX]{4,5)[AV]N', SUBSTR(?thisSequenceValue, ?thisPositionOn44, (?thisPositionOn45 - ?thisPositionOn44)))) . BIND(URI(CONCAT(STR(?this), '#MF_01033a40')) AS ?annotation40) . BIND(?this AS ?pfs39) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch149 faldo:location ?templateMotifSequenceMatchRegionQ5SIY4150 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ5SIY4152 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarQ5SIY4MF_01033145 . ?templateMotifSequenceMatchRegionQ5SIY4150 faldo:begin ?templateMotifSequenceMatchBeginQ5SIY4151 . ?templateMotifSequenceMatchBeginQ5SIY4151 faldo:position ?templateMotifSequenceMatchBeginPositionQ5SIY4146 ; faldo:reference isoform:Q5SIY4-1 . ?templateMotifSequenceProfileAlignmentOperationQ5SIY4152 edam:has_input signature:MF_01033 ; rdf:type edam:operation_0300 . ?targetMotifMatch153 faldo:location ?targetMotifMatchRegionMatch154 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01033156 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarQ5SIY4MF_01033147 . ?targetMotifMatchRegionMatch154 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01033155 . ?targetMotifMatchRegionMatchBeginMF_01033155 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01033148 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_01033156 edam:has_input signature:MF_01033 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ5SIY4MF_01033145, 1, (STRLEN(?templateMotifCigarQ5SIY4MF_01033145) - STRLEN(REPLACE(?templateMotifCigarQ5SIY4MF_01033145, CONCAT('^(?:-*[^-]){', STR(((94 - ?templateMotifSequenceMatchBeginPositionQ5SIY4146) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1157) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ5SIY4MF_01033147, 1, (STRLEN(?targetMotifMatchCigarQ5SIY4MF_01033147) - STRLEN(REPLACE(?targetMotifMatchCigarQ5SIY4MF_01033147, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1157), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ5SIY4MF_01033147, 1, (STRLEN(?targetMotifMatchCigarQ5SIY4MF_01033147) - STRLEN(REPLACE(?targetMotifMatchCigarQ5SIY4MF_01033147, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1157), '}'), '')))), '[^-]', ''))) AS ?step2158) . BIND(((?step2158 + ?targetMotifMatchRegionMatchBeginPositionMF_01033148) - 1) AS ?thisPositionOn52) . BIND(?thisPositionOn52 AS ?thisPositionOn53) . BIND(?this AS ?pfs2t159) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn52))) AS ?pfsb48) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn53))) AS ?pfse49) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn52, 1) = 'R')) . BIND(URI(CONCAT(STR(?this), '#MF_01033a47')) AS ?annotation47) . BIND(?this AS ?pfs46) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch164 faldo:location ?templateMotifSequenceMatchRegionQ5SIY4165 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ5SIY4167 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarQ5SIY4MF_01033160 . ?templateMotifSequenceMatchRegionQ5SIY4165 faldo:begin ?templateMotifSequenceMatchBeginQ5SIY4166 . ?templateMotifSequenceMatchBeginQ5SIY4166 faldo:position ?templateMotifSequenceMatchBeginPositionQ5SIY4161 ; faldo:reference isoform:Q5SIY4-1 . ?templateMotifSequenceProfileAlignmentOperationQ5SIY4167 edam:has_input signature:MF_01033 ; rdf:type edam:operation_0300 . ?targetMotifMatch168 faldo:location ?targetMotifMatchRegionMatch169 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01033171 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarQ5SIY4MF_01033162 . ?targetMotifMatchRegionMatch169 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01033170 . ?targetMotifMatchRegionMatchBeginMF_01033170 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01033163 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_01033171 edam:has_input signature:MF_01033 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ5SIY4MF_01033160, 1, (STRLEN(?templateMotifCigarQ5SIY4MF_01033160) - STRLEN(REPLACE(?templateMotifCigarQ5SIY4MF_01033160, CONCAT('^(?:-*[^-]){', STR(((104 - ?templateMotifSequenceMatchBeginPositionQ5SIY4161) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1172) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ5SIY4MF_01033162, 1, (STRLEN(?targetMotifMatchCigarQ5SIY4MF_01033162) - STRLEN(REPLACE(?targetMotifMatchCigarQ5SIY4MF_01033162, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1172), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ5SIY4MF_01033162, 1, (STRLEN(?targetMotifMatchCigarQ5SIY4MF_01033162) - STRLEN(REPLACE(?targetMotifMatchCigarQ5SIY4MF_01033162, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1172), '}'), '')))), '[^-]', ''))) AS ?step2173) . BIND(((?step2173 + ?targetMotifMatchRegionMatchBeginPositionMF_01033163) - 1) AS ?thisPositionOn60) . BIND(?thisPositionOn60 AS ?thisPositionOn61) . BIND(?this AS ?pfs2t174) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn60))) AS ?pfsb56) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn61))) AS ?pfse57) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn60, 1) = 'R')) . BIND(URI(CONCAT(STR(?this), '#MF_01033a55')) AS ?annotation55) . BIND(?this AS ?pfs54) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch179 faldo:location ?templateMotifSequenceMatchRegionQ5SIY4180 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ5SIY4182 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarQ5SIY4MF_01033175 . ?templateMotifSequenceMatchRegionQ5SIY4180 faldo:begin ?templateMotifSequenceMatchBeginQ5SIY4181 . ?templateMotifSequenceMatchBeginQ5SIY4181 faldo:position ?templateMotifSequenceMatchBeginPositionQ5SIY4176 ; faldo:reference isoform:Q5SIY4-1 . ?templateMotifSequenceProfileAlignmentOperationQ5SIY4182 edam:has_input signature:MF_01033 ; rdf:type edam:operation_0300 . ?targetMotifMatch183 faldo:location ?targetMotifMatchRegionMatch184 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01033186 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarQ5SIY4MF_01033177 . ?targetMotifMatchRegionMatch184 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01033185 . ?targetMotifMatchRegionMatchBeginMF_01033185 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01033178 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_01033186 edam:has_input signature:MF_01033 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ5SIY4MF_01033175, 1, (STRLEN(?templateMotifCigarQ5SIY4MF_01033175) - STRLEN(REPLACE(?templateMotifCigarQ5SIY4MF_01033175, CONCAT('^(?:-*[^-]){', STR(((132 - ?templateMotifSequenceMatchBeginPositionQ5SIY4176) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1187) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ5SIY4MF_01033177, 1, (STRLEN(?targetMotifMatchCigarQ5SIY4MF_01033177) - STRLEN(REPLACE(?targetMotifMatchCigarQ5SIY4MF_01033177, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1187), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ5SIY4MF_01033177, 1, (STRLEN(?targetMotifMatchCigarQ5SIY4MF_01033177) - STRLEN(REPLACE(?targetMotifMatchCigarQ5SIY4MF_01033177, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1187), '}'), '')))), '[^-]', ''))) AS ?step2188) . BIND(((?step2188 + ?targetMotifMatchRegionMatchBeginPositionMF_01033178) - 1) AS ?thisPositionOn68) . BIND(?thisPositionOn68 AS ?thisPositionOn69) . BIND(?this AS ?pfs2t189) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn68))) AS ?pfsb64) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn69))) AS ?pfse65) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn68, 1) = 'R')) . BIND(URI(CONCAT(STR(?this), '#MF_01033a63')) AS ?annotation63) . BIND(?this AS ?pfs62) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch194 faldo:location ?templateMotifSequenceMatchRegionQ5SIY4195 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ5SIY4197 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarQ5SIY4MF_01033190 . ?templateMotifSequenceMatchRegionQ5SIY4195 faldo:begin ?templateMotifSequenceMatchBeginQ5SIY4196 . ?templateMotifSequenceMatchBeginQ5SIY4196 faldo:position ?templateMotifSequenceMatchBeginPositionQ5SIY4191 ; faldo:reference isoform:Q5SIY4-1 . ?templateMotifSequenceProfileAlignmentOperationQ5SIY4197 edam:has_input signature:MF_01033 ; rdf:type edam:operation_0300 . ?targetMotifMatch198 faldo:location ?targetMotifMatchRegionMatch199 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01033201 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarQ5SIY4MF_01033192 . ?targetMotifMatchRegionMatch199 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01033200 . ?targetMotifMatchRegionMatchBeginMF_01033200 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01033193 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_01033201 edam:has_input signature:MF_01033 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ5SIY4MF_01033190, 1, (STRLEN(?templateMotifCigarQ5SIY4MF_01033190) - STRLEN(REPLACE(?templateMotifCigarQ5SIY4MF_01033190, CONCAT('^(?:-*[^-]){', STR(((217 - ?templateMotifSequenceMatchBeginPositionQ5SIY4191) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1202) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ5SIY4MF_01033192, 1, (STRLEN(?targetMotifMatchCigarQ5SIY4MF_01033192) - STRLEN(REPLACE(?targetMotifMatchCigarQ5SIY4MF_01033192, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1202), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ5SIY4MF_01033192, 1, (STRLEN(?targetMotifMatchCigarQ5SIY4MF_01033192) - STRLEN(REPLACE(?targetMotifMatchCigarQ5SIY4MF_01033192, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1202), '}'), '')))), '[^-]', ''))) AS ?step2203) . BIND(((?step2203 + ?targetMotifMatchRegionMatchBeginPositionMF_01033193) - 1) AS ?thisPositionOn76) . BIND(?thisPositionOn76 AS ?thisPositionOn77) . BIND(?this AS ?pfs2t204) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn76))) AS ?pfsb72) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn77))) AS ?pfse73) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn76, 1) = 'D')) . BIND(URI(CONCAT(STR(?this), '#MF_01033a71')) AS ?annotation71) . BIND(?this AS ?pfs70) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch209 faldo:location ?templateMotifSequenceMatchRegionQ5SIY4210 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ5SIY4212 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarQ5SIY4MF_01033205 . ?templateMotifSequenceMatchRegionQ5SIY4210 faldo:begin ?templateMotifSequenceMatchBeginQ5SIY4211 . ?templateMotifSequenceMatchBeginQ5SIY4211 faldo:position ?templateMotifSequenceMatchBeginPositionQ5SIY4206 ; faldo:reference isoform:Q5SIY4-1 . ?templateMotifSequenceProfileAlignmentOperationQ5SIY4212 edam:has_input signature:MF_01033 ; rdf:type edam:operation_0300 . ?targetMotifMatch213 faldo:location ?targetMotifMatchRegionMatch214 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01033216 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarQ5SIY4MF_01033207 . ?targetMotifMatchRegionMatch214 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01033215 . ?targetMotifMatchRegionMatchBeginMF_01033215 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01033208 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_01033216 edam:has_input signature:MF_01033 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ5SIY4MF_01033205, 1, (STRLEN(?templateMotifCigarQ5SIY4MF_01033205) - STRLEN(REPLACE(?templateMotifCigarQ5SIY4MF_01033205, CONCAT('^(?:-*[^-]){', STR(((139 - ?templateMotifSequenceMatchBeginPositionQ5SIY4206) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1217) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ5SIY4MF_01033207, 1, (STRLEN(?targetMotifMatchCigarQ5SIY4MF_01033207) - STRLEN(REPLACE(?targetMotifMatchCigarQ5SIY4MF_01033207, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1217), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ5SIY4MF_01033207, 1, (STRLEN(?targetMotifMatchCigarQ5SIY4MF_01033207) - STRLEN(REPLACE(?targetMotifMatchCigarQ5SIY4MF_01033207, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1217), '}'), '')))), '[^-]', ''))) AS ?step2218) . BIND(((?step2218 + ?targetMotifMatchRegionMatchBeginPositionMF_01033208) - 1) AS ?thisPositionOn82) . BIND(?thisPositionOn82 AS ?thisPositionOn83) . BIND(?this AS ?pfs2t219) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn82))) AS ?pfsb80) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn83))) AS ?pfse81) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn82, 1) = 'Y')) . BIND(URI(CONCAT(STR(?this), '#MF_01033a79')) AS ?annotation79) . BIND(?this AS ?pfs78) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch224 faldo:location ?templateMotifSequenceMatchRegionQ5SIY4225 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ5SIY4227 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarQ5SIY4MF_01033220 . ?templateMotifSequenceMatchRegionQ5SIY4225 faldo:begin ?templateMotifSequenceMatchBeginQ5SIY4226 . ?templateMotifSequenceMatchBeginQ5SIY4226 faldo:position ?templateMotifSequenceMatchBeginPositionQ5SIY4221 ; faldo:reference isoform:Q5SIY4-1 . ?templateMotifSequenceProfileAlignmentOperationQ5SIY4227 edam:has_input signature:MF_01033 ; rdf:type edam:operation_0300 . ?targetMotifMatch228 faldo:location ?targetMotifMatchRegionMatch229 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01033231 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarQ5SIY4MF_01033222 . ?targetMotifMatchRegionMatch229 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01033230 . ?targetMotifMatchRegionMatchBeginMF_01033230 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01033223 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_01033231 edam:has_input signature:MF_01033 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ5SIY4MF_01033220, 1, (STRLEN(?templateMotifCigarQ5SIY4MF_01033220) - STRLEN(REPLACE(?templateMotifCigarQ5SIY4MF_01033220, CONCAT('^(?:-*[^-]){', STR(((185 - ?templateMotifSequenceMatchBeginPositionQ5SIY4221) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1232) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ5SIY4MF_01033222, 1, (STRLEN(?targetMotifMatchCigarQ5SIY4MF_01033222) - STRLEN(REPLACE(?targetMotifMatchCigarQ5SIY4MF_01033222, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1232), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ5SIY4MF_01033222, 1, (STRLEN(?targetMotifMatchCigarQ5SIY4MF_01033222) - STRLEN(REPLACE(?targetMotifMatchCigarQ5SIY4MF_01033222, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1232), '}'), '')))), '[^-]', ''))) AS ?step2233) . BIND(((?step2233 + ?targetMotifMatchRegionMatchBeginPositionMF_01033223) - 1) AS ?thisPositionOn88) . BIND(?thisPositionOn88 AS ?thisPositionOn89) . BIND(?this AS ?pfs2t234) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn88))) AS ?pfsb86) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn89))) AS ?pfse87) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn88, 1) = 'K')) . BIND(URI(CONCAT(STR(?this), '#MF_01033a85')) AS ?annotation85) . BIND(?this AS ?pfs84) . } }