CONSTRUCT { _:365225 up:source unirule:MF_01039 . _:365226 up:source unirule:MF_01039 . _:365227 up:source unirule:MF_01039 . _:365228 up:source unirule:MF_01039 . _:365229 up:source unirule:MF_01039 . _:365230 up:source unirule:MF_01039 . _:365231 up:source unirule:MF_01039 . _:365232 up:source unirule:MF_01039 . _:365233 up:source unirule:MF_01039 . _:365234 up:source unirule:MF_01039 . _:365235 up:source unirule:MF_01039 . _:365236 up:source unirule:MF_01039 . _:365237 up:source unirule:MF_01039 . _:365238 up:source unirule:MF_01039 . _:365239 up:source unirule:MF_01039 . _:365240 up:source unirule:MF_01039 . _:365241 up:source unirule:MF_01039 . _:365242 up:source unirule:MF_01039 . _:365243 up:source unirule:MF_01039 . _:365244 up:source unirule:MF_01039 . _:365245 up:source unirule:MF_01039 . _:365246 up:source unirule:MF_01039 . ?this up:annotation ?annotation2 , ?annotation3 , ?annotation5 , ?annotation6 ; up:classifiedWith GO:0004619 , GO:0006094 , GO:0006096 , keyword:312 , keyword:324 , keyword:413 ; up:recommendedName ?name0 . ?name0 up:ecName '5.4.2.11' ; up:fullName '2,3-bisphosphoglycerate-dependent phosphoglycerate mutase' ; up:shortName 'BPG-dependent PGAM' , 'PGAM' , 'Phosphoglyceromutase' , 'dPGM' ; rdf:type up:Structured_Name . ?gene1 skos:prefLabel 'gpmA' . ?annotation2 a up:Function_Annotation ; rdfs:comment 'Catalyzes the interconversion of 2-phosphoglycerate and 3-phosphoglycerate.' . ?annotation3 up:activity ?activity4 ; rdf:type up:Catalytic_Activity_Annotation . ?activity4 up:catalyticActivity <http://rdf.rhea-db.org/15901>; up:enzymeClass <http://purl.uniprot.org/enzyme/5.4.2.11>. ?annotation5 a up:Pathway_Annotation ; rdfs:comment 'Carbohydrate degradation; glycolysis; pyruvate from D-glyceraldehyde 3-phosphate: step 3/5.' . ?annotation6 a up:Similarity_Annotation ; rdfs:comment 'Belongs to the phosphoglycerate mutase family. BPG-dependent PGAM subfamily.' . ?pfs8 up:annotation ?annotation9 . ?annotation9 faldo:begin ?pfsb10 ; faldo:end ?pfse11 ; up:ligand ?ligand12 ; rdf:type up:Binding_Site_Annotation . ?pfsb10 faldo:position ?thisPositionOn14 ; rdf:type faldo:ExactPosition . ?pfse11 faldo:position ?thisPositionOn15 ; rdf:type faldo:ExactPosition . ?ligand12 rdfs:subClassOf ?molecule13 . ?molecule13 rdfs:label 'substrate' . ?pfs16 up:annotation ?annotation17 . ?annotation17 faldo:begin ?pfsb18 ; faldo:end ?pfse19 ; up:ligand ?ligand20 ; rdf:type up:Binding_Site_Annotation . ?pfsb18 faldo:position ?thisPositionOn22 ; rdf:type faldo:ExactPosition . ?pfse19 faldo:position ?thisPositionOn23 ; rdf:type faldo:ExactPosition . ?ligand20 rdfs:subClassOf ?molecule21 . ?molecule21 rdfs:label 'substrate' . ?pfs24 up:annotation ?annotation25 . ?annotation25 faldo:begin ?pfsb26 ; faldo:end ?pfse27 ; up:ligand ?ligand28 ; rdf:type up:Binding_Site_Annotation . ?pfsb26 faldo:position ?thisPositionOn30 ; rdf:type faldo:ExactPosition . ?pfse27 faldo:position ?thisPositionOn31 ; rdf:type faldo:ExactPosition . ?ligand28 rdfs:subClassOf ?molecule29 . ?molecule29 rdfs:label 'substrate' . ?pfs32 up:annotation ?annotation33 . ?annotation33 faldo:begin ?pfsb34 ; faldo:end ?pfse35 ; up:ligand ?ligand36 ; rdf:type up:Binding_Site_Annotation . ?pfsb34 faldo:position ?thisPositionOn38 ; rdf:type faldo:ExactPosition . ?pfse35 faldo:position ?thisPositionOn39 ; rdf:type faldo:ExactPosition . ?ligand36 rdfs:subClassOf ?molecule37 . ?molecule37 rdfs:label 'substrate' . ?pfs40 up:annotation ?annotation41 . ?annotation41 faldo:begin ?pfsb42 ; faldo:end ?pfse43 ; up:ligand ?ligand44 ; rdf:type up:Binding_Site_Annotation . ?pfsb42 faldo:position ?thisPositionOn46 ; rdf:type faldo:ExactPosition . ?pfse43 faldo:position ?thisPositionOn47 ; rdf:type faldo:ExactPosition . ?ligand44 rdfs:subClassOf ?molecule45 . ?molecule45 rdfs:label 'substrate' . ?pfs48 up:annotation ?annotation49 . ?annotation49 faldo:begin ?pfsb50 ; faldo:end ?pfse51 ; rdf:type up:Active_Site_Annotation ; rdfs:comment 'Tele-phosphohistidine intermediate' . ?pfsb50 faldo:position ?thisPositionOn52 ; rdf:type faldo:ExactPosition . ?pfse51 faldo:position ?thisPositionOn53 ; rdf:type faldo:ExactPosition . ?pfs54 up:annotation ?annotation55 . ?annotation55 faldo:begin ?pfsb56 ; faldo:end ?pfse57 ; rdf:type up:Active_Site_Annotation ; rdfs:comment 'Proton donor/acceptor' . ?pfsb56 faldo:position ?thisPositionOn58 ; rdf:type faldo:ExactPosition . ?pfse57 faldo:position ?thisPositionOn59 ; rdf:type faldo:ExactPosition . ?pfs60 up:annotation ?annotation61 . ?annotation61 faldo:begin ?pfsb62 ; faldo:end ?pfse63 ; up:ligand ?ligand64 ; rdf:type up:Binding_Site_Annotation . ?pfsb62 faldo:position ?thisPositionOn66 ; rdf:type faldo:ExactPosition . ?pfse63 faldo:position ?thisPositionOn67 ; rdf:type faldo:ExactPosition . ?ligand64 rdfs:subClassOf ?molecule65 . ?molecule65 rdfs:label 'substrate' . ?pfs68 up:annotation ?annotation69 . ?annotation69 faldo:begin ?pfsb70 ; faldo:end ?pfse71 ; up:ligand ?ligand72 ; rdf:type up:Binding_Site_Annotation . ?pfsb70 faldo:position ?thisPositionOn74 ; rdf:type faldo:ExactPosition . ?pfse71 faldo:position ?thisPositionOn75 ; rdf:type faldo:ExactPosition . ?ligand72 rdfs:subClassOf ?molecule73 . ?molecule73 rdfs:label 'substrate' . ?pfs76 up:annotation ?annotation77 . ?annotation77 faldo:begin ?pfsb78 ; faldo:end ?pfse79 ; rdf:type up:Site_Annotation ; rdfs:comment 'Transition state stabilizer' . ?pfsb78 faldo:position ?thisPositionOn80 ; rdf:type faldo:ExactPosition . ?pfse79 faldo:position ?thisPositionOn81 ; rdf:type faldo:ExactPosition . _:365247 a rdf:Statement ; up:attribution _:365225 ; rdf:subject ?this ; rdf:predicate up:recommendedName ; rdf:object ?name0 . _:365248 a rdf:Statement ; up:attribution _:365226 ; rdf:subject ?gene1 ; rdf:predicate up:encodedBy ; rdf:object ?gene1 . _:365249 a rdf:Statement ; up:attribution _:365227 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation2 . _:365250 a rdf:Statement ; up:attribution _:365228 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation3 . _:365251 a rdf:Statement ; up:attribution _:365229 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation5 . _:365252 a rdf:Statement ; up:attribution _:365230 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation6 . _:365253 a rdf:Statement ; up:attribution _:365231 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:413 . _:365254 a rdf:Statement ; up:attribution _:365232 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:324 . _:365255 a rdf:Statement ; up:attribution _:365233 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:312 . _:365256 a rdf:Statement ; up:attribution _:365234 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object GO:0004619 . _:365257 a rdf:Statement ; up:attribution _:365235 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object GO:0006094 . _:365258 a rdf:Statement ; up:attribution _:365236 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object GO:0006096 . _:365259 a rdf:Statement ; up:source unirule:MF_01039 ; rdf:subject ?pfs8 ; rdf:predicate up:annotation ; rdf:object ?annotation9 . _:365260 a rdf:Statement ; up:attribution _:365237 ; rdf:subject ?pfs8 ; rdf:predicate up:annotation ; rdf:object ?annotation9 . _:365261 a rdf:Statement ; up:source unirule:MF_01039 ; rdf:subject ?pfs16 ; rdf:predicate up:annotation ; rdf:object ?annotation17 . _:365262 a rdf:Statement ; up:attribution _:365238 ; rdf:subject ?pfs16 ; rdf:predicate up:annotation ; rdf:object ?annotation17 . _:365263 a rdf:Statement ; up:source unirule:MF_01039 ; rdf:subject ?pfs24 ; rdf:predicate up:annotation ; rdf:object ?annotation25 . _:365264 a rdf:Statement ; up:attribution _:365239 ; rdf:subject ?pfs24 ; rdf:predicate up:annotation ; rdf:object ?annotation25 . _:365265 a rdf:Statement ; up:source unirule:MF_01039 ; rdf:subject ?pfs32 ; rdf:predicate up:annotation ; rdf:object ?annotation33 . _:365266 a rdf:Statement ; up:attribution _:365240 ; rdf:subject ?pfs32 ; rdf:predicate up:annotation ; rdf:object ?annotation33 . _:365267 a rdf:Statement ; up:source unirule:MF_01039 ; rdf:subject ?pfs40 ; rdf:predicate up:annotation ; rdf:object ?annotation41 . _:365268 a rdf:Statement ; up:attribution _:365241 ; rdf:subject ?pfs40 ; rdf:predicate up:annotation ; rdf:object ?annotation41 . _:365269 a rdf:Statement ; up:source unirule:MF_01039 ; rdf:subject ?pfs48 ; rdf:predicate up:annotation ; rdf:object ?annotation49 . _:365270 a rdf:Statement ; up:attribution _:365242 ; rdf:subject ?pfs48 ; rdf:predicate up:annotation ; rdf:object ?annotation49 . _:365271 a rdf:Statement ; up:source unirule:MF_01039 ; rdf:subject ?pfs54 ; rdf:predicate up:annotation ; rdf:object ?annotation55 . _:365272 a rdf:Statement ; up:attribution _:365243 ; rdf:subject ?pfs54 ; rdf:predicate up:annotation ; rdf:object ?annotation55 . _:365273 a rdf:Statement ; up:source unirule:MF_01039 ; rdf:subject ?pfs60 ; rdf:predicate up:annotation ; rdf:object ?annotation61 . _:365274 a rdf:Statement ; up:attribution _:365244 ; rdf:subject ?pfs60 ; rdf:predicate up:annotation ; rdf:object ?annotation61 . _:365275 a rdf:Statement ; up:source unirule:MF_01039 ; rdf:subject ?pfs68 ; rdf:predicate up:annotation ; rdf:object ?annotation69 . _:365276 a rdf:Statement ; up:attribution _:365245 ; rdf:subject ?pfs68 ; rdf:predicate up:annotation ; rdf:object ?annotation69 . _:365277 a rdf:Statement ; up:source unirule:MF_01039 ; rdf:subject ?pfs76 ; rdf:predicate up:annotation ; rdf:object ?annotation77 . _:365278 a rdf:Statement ; up:attribution _:365246 ; rdf:subject ?pfs76 ; rdf:predicate up:annotation ; rdf:object ?annotation77 . } WHERE { #baseURI: http://purl.uniprot.org/unirule/MF_01039 #Rule MF_01039 Created by:? on:2005-02-28 Modified by:Catherine Rivoire on:2025-01-14 VALUES ?supertaxon82 {taxon:2 taxon:2157} ?this up:organism ?thisOrganism ; rdfs:seeAlso signature:MF_01039 . ?thisOrganism rdfs:subClassOf+ ?supertaxon82 . BIND(URI(CONCAT(STR(?this), '#MF_01039a0')) AS ?name0) . BIND(URI(CONCAT(STR(?this), '#MF_01039a2')) AS ?annotation2) . BIND(URI(CONCAT(STR(?this), '#MF_01039a3')) AS ?annotation3) . BIND(URI(CONCAT(STR(?this), '#MF_01039a5')) AS ?annotation5) . BIND(URI(CONCAT(STR(?this), '#MF_01039a6')) AS ?annotation6) . OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch87 faldo:location ?templateMotifSequenceMatchRegionP6270788 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP6270790 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP62707MF_0103983 . ?templateMotifSequenceMatchRegionP6270788 faldo:begin ?templateMotifSequenceMatchBeginP6270789 . ?templateMotifSequenceMatchBeginP6270789 faldo:position ?templateMotifSequenceMatchBeginPositionP6270784 ; faldo:reference isoform:P62707-1 . ?templateMotifSequenceProfileAlignmentOperationP6270790 edam:has_input signature:MF_01039 ; rdf:type edam:operation_0300 . ?targetMotifMatch91 faldo:location ?targetMotifMatchRegionMatch92 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0103994 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP62707MF_0103985 . ?targetMotifMatchRegionMatch92 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0103993 . ?targetMotifMatchRegionMatchBeginMF_0103993 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0103986 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_0103994 edam:has_input signature:MF_01039 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP62707MF_0103983, 1, (STRLEN(?templateMotifCigarP62707MF_0103983) - STRLEN(REPLACE(?templateMotifCigarP62707MF_0103983, CONCAT('^(?:-*[^-]){', STR(((10 - ?templateMotifSequenceMatchBeginPositionP6270784) + 1)), '}'), '')))), '[a-z]', '')) AS ?step195) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP62707MF_0103985, 1, (STRLEN(?targetMotifMatchCigarP62707MF_0103985) - STRLEN(REPLACE(?targetMotifMatchCigarP62707MF_0103985, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step195), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP62707MF_0103985, 1, (STRLEN(?targetMotifMatchCigarP62707MF_0103985) - STRLEN(REPLACE(?targetMotifMatchCigarP62707MF_0103985, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step195), '}'), '')))), '[^-]', ''))) AS ?step296) . BIND(((?step296 + ?targetMotifMatchRegionMatchBeginPositionMF_0103986) - 1) AS ?thisPositionOn14) . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP62707MF_0103983, 1, (STRLEN(?templateMotifCigarP62707MF_0103983) - STRLEN(REPLACE(?templateMotifCigarP62707MF_0103983, CONCAT('^(?:-*[^-]){', STR(((17 - ?templateMotifSequenceMatchBeginPositionP6270784) + 1)), '}'), '')))), '[a-z]', '')) AS ?step197) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP62707MF_0103985, 1, (STRLEN(?targetMotifMatchCigarP62707MF_0103985) - STRLEN(REPLACE(?targetMotifMatchCigarP62707MF_0103985, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step197), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP62707MF_0103985, 1, (STRLEN(?targetMotifMatchCigarP62707MF_0103985) - STRLEN(REPLACE(?targetMotifMatchCigarP62707MF_0103985, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step197), '}'), '')))), '[^-]', ''))) AS ?step298) . BIND(((?step298 + ?targetMotifMatchRegionMatchBeginPositionMF_0103986) - 1) AS ?thisPositionOn15) . BIND(?this AS ?pfs1t99) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn14))) AS ?pfsb10) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn15))) AS ?pfse11) . FILTER (REGEX('RHG[ARNDCQEGHILKMFPSTWYVBZJUOX]S[ARNDCQEGHILKMFPSTWYVBZJUOX]{2)[NK]', SUBSTR(?thisSequenceValue, ?thisPositionOn14, (?thisPositionOn15 - ?thisPositionOn14)))) . BIND(URI(CONCAT(STR(?this), '#MF_01039a9')) AS ?annotation9) . BIND(?this AS ?pfs8) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch104 faldo:location ?templateMotifSequenceMatchRegionP62707105 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP62707107 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP62707MF_01039100 . ?templateMotifSequenceMatchRegionP62707105 faldo:begin ?templateMotifSequenceMatchBeginP62707106 . ?templateMotifSequenceMatchBeginP62707106 faldo:position ?templateMotifSequenceMatchBeginPositionP62707101 ; faldo:reference isoform:P62707-1 . ?templateMotifSequenceProfileAlignmentOperationP62707107 edam:has_input signature:MF_01039 ; rdf:type edam:operation_0300 . ?targetMotifMatch108 faldo:location ?targetMotifMatchRegionMatch109 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01039111 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP62707MF_01039102 . ?targetMotifMatchRegionMatch109 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01039110 . ?targetMotifMatchRegionMatchBeginMF_01039110 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01039103 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_01039111 edam:has_input signature:MF_01039 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP62707MF_01039100, 1, (STRLEN(?templateMotifCigarP62707MF_01039100) - STRLEN(REPLACE(?templateMotifCigarP62707MF_01039100, CONCAT('^(?:-*[^-]){', STR(((23 - ?templateMotifSequenceMatchBeginPositionP62707101) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1112) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP62707MF_01039102, 1, (STRLEN(?targetMotifMatchCigarP62707MF_01039102) - STRLEN(REPLACE(?targetMotifMatchCigarP62707MF_01039102, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1112), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP62707MF_01039102, 1, (STRLEN(?targetMotifMatchCigarP62707MF_01039102) - STRLEN(REPLACE(?targetMotifMatchCigarP62707MF_01039102, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1112), '}'), '')))), '[^-]', ''))) AS ?step2113) . BIND(((?step2113 + ?targetMotifMatchRegionMatchBeginPositionMF_01039103) - 1) AS ?thisPositionOn22) . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP62707MF_01039100, 1, (STRLEN(?templateMotifCigarP62707MF_01039100) - STRLEN(REPLACE(?templateMotifCigarP62707MF_01039100, CONCAT('^(?:-*[^-]){', STR(((24 - ?templateMotifSequenceMatchBeginPositionP62707101) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1114) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP62707MF_01039102, 1, (STRLEN(?targetMotifMatchCigarP62707MF_01039102) - STRLEN(REPLACE(?targetMotifMatchCigarP62707MF_01039102, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1114), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP62707MF_01039102, 1, (STRLEN(?targetMotifMatchCigarP62707MF_01039102) - STRLEN(REPLACE(?targetMotifMatchCigarP62707MF_01039102, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1114), '}'), '')))), '[^-]', ''))) AS ?step2115) . BIND(((?step2115 + ?targetMotifMatchRegionMatchBeginPositionMF_01039103) - 1) AS ?thisPositionOn23) . BIND(?this AS ?pfs1t116) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn22))) AS ?pfsb18) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn23))) AS ?pfse19) . FILTER (REGEX('[TS]G', SUBSTR(?thisSequenceValue, ?thisPositionOn22, (?thisPositionOn23 - ?thisPositionOn22)))) . BIND(URI(CONCAT(STR(?this), '#MF_01039a17')) AS ?annotation17) . BIND(?this AS ?pfs16) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch121 faldo:location ?templateMotifSequenceMatchRegionP62707122 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP62707124 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP62707MF_01039117 . ?templateMotifSequenceMatchRegionP62707122 faldo:begin ?templateMotifSequenceMatchBeginP62707123 . ?templateMotifSequenceMatchBeginP62707123 faldo:position ?templateMotifSequenceMatchBeginPositionP62707118 ; faldo:reference isoform:P62707-1 . ?templateMotifSequenceProfileAlignmentOperationP62707124 edam:has_input signature:MF_01039 ; rdf:type edam:operation_0300 . ?targetMotifMatch125 faldo:location ?targetMotifMatchRegionMatch126 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01039128 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP62707MF_01039119 . ?targetMotifMatchRegionMatch126 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01039127 . ?targetMotifMatchRegionMatchBeginMF_01039127 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01039120 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_01039128 edam:has_input signature:MF_01039 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP62707MF_01039117, 1, (STRLEN(?templateMotifCigarP62707MF_01039117) - STRLEN(REPLACE(?templateMotifCigarP62707MF_01039117, CONCAT('^(?:-*[^-]){', STR(((89 - ?templateMotifSequenceMatchBeginPositionP62707118) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1129) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP62707MF_01039119, 1, (STRLEN(?targetMotifMatchCigarP62707MF_01039119) - STRLEN(REPLACE(?targetMotifMatchCigarP62707MF_01039119, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1129), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP62707MF_01039119, 1, (STRLEN(?targetMotifMatchCigarP62707MF_01039119) - STRLEN(REPLACE(?targetMotifMatchCigarP62707MF_01039119, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1129), '}'), '')))), '[^-]', ''))) AS ?step2130) . BIND(((?step2130 + ?targetMotifMatchRegionMatchBeginPositionMF_01039120) - 1) AS ?thisPositionOn30) . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP62707MF_01039117, 1, (STRLEN(?templateMotifCigarP62707MF_01039117) - STRLEN(REPLACE(?templateMotifCigarP62707MF_01039117, CONCAT('^(?:-*[^-]){', STR(((92 - ?templateMotifSequenceMatchBeginPositionP62707118) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1131) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP62707MF_01039119, 1, (STRLEN(?targetMotifMatchCigarP62707MF_01039119) - STRLEN(REPLACE(?targetMotifMatchCigarP62707MF_01039119, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1131), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP62707MF_01039119, 1, (STRLEN(?targetMotifMatchCigarP62707MF_01039119) - STRLEN(REPLACE(?targetMotifMatchCigarP62707MF_01039119, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1131), '}'), '')))), '[^-]', ''))) AS ?step2132) . BIND(((?step2132 + ?targetMotifMatchRegionMatchBeginPositionMF_01039120) - 1) AS ?thisPositionOn31) . BIND(?this AS ?pfs1t133) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn30))) AS ?pfsb26) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn31))) AS ?pfse27) . FILTER (REGEX('E[RK][ARNDCQEGHILKMFPSTWYVBZJUOX]Y', SUBSTR(?thisSequenceValue, ?thisPositionOn30, (?thisPositionOn31 - ?thisPositionOn30)))) . BIND(URI(CONCAT(STR(?this), '#MF_01039a25')) AS ?annotation25) . BIND(?this AS ?pfs24) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch138 faldo:location ?templateMotifSequenceMatchRegionP62707139 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP62707141 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP62707MF_01039134 . ?templateMotifSequenceMatchRegionP62707139 faldo:begin ?templateMotifSequenceMatchBeginP62707140 . ?templateMotifSequenceMatchBeginP62707140 faldo:position ?templateMotifSequenceMatchBeginPositionP62707135 ; faldo:reference isoform:P62707-1 . ?templateMotifSequenceProfileAlignmentOperationP62707141 edam:has_input signature:MF_01039 ; rdf:type edam:operation_0300 . ?targetMotifMatch142 faldo:location ?targetMotifMatchRegionMatch143 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01039145 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP62707MF_01039136 . ?targetMotifMatchRegionMatch143 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01039144 . ?targetMotifMatchRegionMatchBeginMF_01039144 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01039137 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_01039145 edam:has_input signature:MF_01039 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP62707MF_01039134, 1, (STRLEN(?templateMotifCigarP62707MF_01039134) - STRLEN(REPLACE(?templateMotifCigarP62707MF_01039134, CONCAT('^(?:-*[^-]){', STR(((116 - ?templateMotifSequenceMatchBeginPositionP62707135) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1146) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP62707MF_01039136, 1, (STRLEN(?targetMotifMatchCigarP62707MF_01039136) - STRLEN(REPLACE(?targetMotifMatchCigarP62707MF_01039136, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1146), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP62707MF_01039136, 1, (STRLEN(?targetMotifMatchCigarP62707MF_01039136) - STRLEN(REPLACE(?targetMotifMatchCigarP62707MF_01039136, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1146), '}'), '')))), '[^-]', ''))) AS ?step2147) . BIND(((?step2147 + ?targetMotifMatchRegionMatchBeginPositionMF_01039137) - 1) AS ?thisPositionOn38) . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP62707MF_01039134, 1, (STRLEN(?templateMotifCigarP62707MF_01039134) - STRLEN(REPLACE(?templateMotifCigarP62707MF_01039134, CONCAT('^(?:-*[^-]){', STR(((117 - ?templateMotifSequenceMatchBeginPositionP62707135) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1148) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP62707MF_01039136, 1, (STRLEN(?targetMotifMatchCigarP62707MF_01039136) - STRLEN(REPLACE(?targetMotifMatchCigarP62707MF_01039136, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1148), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP62707MF_01039136, 1, (STRLEN(?targetMotifMatchCigarP62707MF_01039136) - STRLEN(REPLACE(?targetMotifMatchCigarP62707MF_01039136, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1148), '}'), '')))), '[^-]', ''))) AS ?step2149) . BIND(((?step2149 + ?targetMotifMatchRegionMatchBeginPositionMF_01039137) - 1) AS ?thisPositionOn39) . BIND(?this AS ?pfs1t150) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn38))) AS ?pfsb34) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn39))) AS ?pfse35) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn38, (?thisPositionOn39 - ?thisPositionOn38)) = 'RR')) . BIND(URI(CONCAT(STR(?this), '#MF_01039a33')) AS ?annotation33) . BIND(?this AS ?pfs32) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch155 faldo:location ?templateMotifSequenceMatchRegionP62707156 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP62707158 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP62707MF_01039151 . ?templateMotifSequenceMatchRegionP62707156 faldo:begin ?templateMotifSequenceMatchBeginP62707157 . ?templateMotifSequenceMatchBeginP62707157 faldo:position ?templateMotifSequenceMatchBeginPositionP62707152 ; faldo:reference isoform:P62707-1 . ?templateMotifSequenceProfileAlignmentOperationP62707158 edam:has_input signature:MF_01039 ; rdf:type edam:operation_0300 . ?targetMotifMatch159 faldo:location ?targetMotifMatchRegionMatch160 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01039162 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP62707MF_01039153 . ?targetMotifMatchRegionMatch160 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01039161 . ?targetMotifMatchRegionMatchBeginMF_01039161 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01039154 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_01039162 edam:has_input signature:MF_01039 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP62707MF_01039151, 1, (STRLEN(?templateMotifCigarP62707MF_01039151) - STRLEN(REPLACE(?templateMotifCigarP62707MF_01039151, CONCAT('^(?:-*[^-]){', STR(((185 - ?templateMotifSequenceMatchBeginPositionP62707152) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1163) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP62707MF_01039153, 1, (STRLEN(?targetMotifMatchCigarP62707MF_01039153) - STRLEN(REPLACE(?targetMotifMatchCigarP62707MF_01039153, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1163), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP62707MF_01039153, 1, (STRLEN(?targetMotifMatchCigarP62707MF_01039153) - STRLEN(REPLACE(?targetMotifMatchCigarP62707MF_01039153, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1163), '}'), '')))), '[^-]', ''))) AS ?step2164) . BIND(((?step2164 + ?targetMotifMatchRegionMatchBeginPositionMF_01039154) - 1) AS ?thisPositionOn46) . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP62707MF_01039151, 1, (STRLEN(?templateMotifCigarP62707MF_01039151) - STRLEN(REPLACE(?templateMotifCigarP62707MF_01039151, CONCAT('^(?:-*[^-]){', STR(((186 - ?templateMotifSequenceMatchBeginPositionP62707152) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1165) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP62707MF_01039153, 1, (STRLEN(?targetMotifMatchCigarP62707MF_01039153) - STRLEN(REPLACE(?targetMotifMatchCigarP62707MF_01039153, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1165), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP62707MF_01039153, 1, (STRLEN(?targetMotifMatchCigarP62707MF_01039153) - STRLEN(REPLACE(?targetMotifMatchCigarP62707MF_01039153, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1165), '}'), '')))), '[^-]', ''))) AS ?step2166) . BIND(((?step2166 + ?targetMotifMatchRegionMatchBeginPositionMF_01039154) - 1) AS ?thisPositionOn47) . BIND(?this AS ?pfs1t167) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn46))) AS ?pfsb42) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn47))) AS ?pfse43) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn46, (?thisPositionOn47 - ?thisPositionOn46)) = 'GN')) . BIND(URI(CONCAT(STR(?this), '#MF_01039a41')) AS ?annotation41) . BIND(?this AS ?pfs40) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch172 faldo:location ?templateMotifSequenceMatchRegionP62707173 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP62707175 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP62707MF_01039168 . ?templateMotifSequenceMatchRegionP62707173 faldo:begin ?templateMotifSequenceMatchBeginP62707174 . ?templateMotifSequenceMatchBeginP62707174 faldo:position ?templateMotifSequenceMatchBeginPositionP62707169 ; faldo:reference isoform:P62707-1 . ?templateMotifSequenceProfileAlignmentOperationP62707175 edam:has_input signature:MF_01039 ; rdf:type edam:operation_0300 . ?targetMotifMatch176 faldo:location ?targetMotifMatchRegionMatch177 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01039179 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP62707MF_01039170 . ?targetMotifMatchRegionMatch177 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01039178 . ?targetMotifMatchRegionMatchBeginMF_01039178 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01039171 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_01039179 edam:has_input signature:MF_01039 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP62707MF_01039168, 1, (STRLEN(?templateMotifCigarP62707MF_01039168) - STRLEN(REPLACE(?templateMotifCigarP62707MF_01039168, CONCAT('^(?:-*[^-]){', STR(((11 - ?templateMotifSequenceMatchBeginPositionP62707169) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1180) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP62707MF_01039170, 1, (STRLEN(?targetMotifMatchCigarP62707MF_01039170) - STRLEN(REPLACE(?targetMotifMatchCigarP62707MF_01039170, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1180), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP62707MF_01039170, 1, (STRLEN(?targetMotifMatchCigarP62707MF_01039170) - STRLEN(REPLACE(?targetMotifMatchCigarP62707MF_01039170, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1180), '}'), '')))), '[^-]', ''))) AS ?step2181) . BIND(((?step2181 + ?targetMotifMatchRegionMatchBeginPositionMF_01039171) - 1) AS ?thisPositionOn52) . BIND(?thisPositionOn52 AS ?thisPositionOn53) . BIND(?this AS ?pfs1t182) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn52))) AS ?pfsb50) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn53))) AS ?pfse51) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn52, 1) = 'H')) . BIND(URI(CONCAT(STR(?this), '#MF_01039a49')) AS ?annotation49) . BIND(?this AS ?pfs48) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch187 faldo:location ?templateMotifSequenceMatchRegionP62707188 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP62707190 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP62707MF_01039183 . ?templateMotifSequenceMatchRegionP62707188 faldo:begin ?templateMotifSequenceMatchBeginP62707189 . ?templateMotifSequenceMatchBeginP62707189 faldo:position ?templateMotifSequenceMatchBeginPositionP62707184 ; faldo:reference isoform:P62707-1 . ?templateMotifSequenceProfileAlignmentOperationP62707190 edam:has_input signature:MF_01039 ; rdf:type edam:operation_0300 . ?targetMotifMatch191 faldo:location ?targetMotifMatchRegionMatch192 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01039194 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP62707MF_01039185 . ?targetMotifMatchRegionMatch192 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01039193 . ?targetMotifMatchRegionMatchBeginMF_01039193 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01039186 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_01039194 edam:has_input signature:MF_01039 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP62707MF_01039183, 1, (STRLEN(?templateMotifCigarP62707MF_01039183) - STRLEN(REPLACE(?templateMotifCigarP62707MF_01039183, CONCAT('^(?:-*[^-]){', STR(((89 - ?templateMotifSequenceMatchBeginPositionP62707184) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1195) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP62707MF_01039185, 1, (STRLEN(?targetMotifMatchCigarP62707MF_01039185) - STRLEN(REPLACE(?targetMotifMatchCigarP62707MF_01039185, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1195), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP62707MF_01039185, 1, (STRLEN(?targetMotifMatchCigarP62707MF_01039185) - STRLEN(REPLACE(?targetMotifMatchCigarP62707MF_01039185, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1195), '}'), '')))), '[^-]', ''))) AS ?step2196) . BIND(((?step2196 + ?targetMotifMatchRegionMatchBeginPositionMF_01039186) - 1) AS ?thisPositionOn58) . BIND(?thisPositionOn58 AS ?thisPositionOn59) . BIND(?this AS ?pfs1t197) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn58))) AS ?pfsb56) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn59))) AS ?pfse57) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn58, 1) = 'E')) . BIND(URI(CONCAT(STR(?this), '#MF_01039a55')) AS ?annotation55) . BIND(?this AS ?pfs54) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch202 faldo:location ?templateMotifSequenceMatchRegionP62707203 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP62707205 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP62707MF_01039198 . ?templateMotifSequenceMatchRegionP62707203 faldo:begin ?templateMotifSequenceMatchBeginP62707204 . ?templateMotifSequenceMatchBeginP62707204 faldo:position ?templateMotifSequenceMatchBeginPositionP62707199 ; faldo:reference isoform:P62707-1 . ?templateMotifSequenceProfileAlignmentOperationP62707205 edam:has_input signature:MF_01039 ; rdf:type edam:operation_0300 . ?targetMotifMatch206 faldo:location ?targetMotifMatchRegionMatch207 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01039209 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP62707MF_01039200 . ?targetMotifMatchRegionMatch207 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01039208 . ?targetMotifMatchRegionMatchBeginMF_01039208 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01039201 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_01039209 edam:has_input signature:MF_01039 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP62707MF_01039198, 1, (STRLEN(?templateMotifCigarP62707MF_01039198) - STRLEN(REPLACE(?templateMotifCigarP62707MF_01039198, CONCAT('^(?:-*[^-]){', STR(((62 - ?templateMotifSequenceMatchBeginPositionP62707199) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1210) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP62707MF_01039200, 1, (STRLEN(?targetMotifMatchCigarP62707MF_01039200) - STRLEN(REPLACE(?targetMotifMatchCigarP62707MF_01039200, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1210), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP62707MF_01039200, 1, (STRLEN(?targetMotifMatchCigarP62707MF_01039200) - STRLEN(REPLACE(?targetMotifMatchCigarP62707MF_01039200, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1210), '}'), '')))), '[^-]', ''))) AS ?step2211) . BIND(((?step2211 + ?targetMotifMatchRegionMatchBeginPositionMF_01039201) - 1) AS ?thisPositionOn66) . BIND(?thisPositionOn66 AS ?thisPositionOn67) . BIND(?this AS ?pfs1t212) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn66))) AS ?pfsb62) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn67))) AS ?pfse63) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn66, 1) = 'R')) . BIND(URI(CONCAT(STR(?this), '#MF_01039a61')) AS ?annotation61) . BIND(?this AS ?pfs60) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch217 faldo:location ?templateMotifSequenceMatchRegionP62707218 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP62707220 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP62707MF_01039213 . ?templateMotifSequenceMatchRegionP62707218 faldo:begin ?templateMotifSequenceMatchBeginP62707219 . ?templateMotifSequenceMatchBeginP62707219 faldo:position ?templateMotifSequenceMatchBeginPositionP62707214 ; faldo:reference isoform:P62707-1 . ?templateMotifSequenceProfileAlignmentOperationP62707220 edam:has_input signature:MF_01039 ; rdf:type edam:operation_0300 . ?targetMotifMatch221 faldo:location ?targetMotifMatchRegionMatch222 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01039224 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP62707MF_01039215 . ?targetMotifMatchRegionMatch222 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01039223 . ?targetMotifMatchRegionMatchBeginMF_01039223 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01039216 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_01039224 edam:has_input signature:MF_01039 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP62707MF_01039213, 1, (STRLEN(?templateMotifCigarP62707MF_01039213) - STRLEN(REPLACE(?templateMotifCigarP62707MF_01039213, CONCAT('^(?:-*[^-]){', STR(((100 - ?templateMotifSequenceMatchBeginPositionP62707214) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1225) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP62707MF_01039215, 1, (STRLEN(?targetMotifMatchCigarP62707MF_01039215) - STRLEN(REPLACE(?targetMotifMatchCigarP62707MF_01039215, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1225), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP62707MF_01039215, 1, (STRLEN(?targetMotifMatchCigarP62707MF_01039215) - STRLEN(REPLACE(?targetMotifMatchCigarP62707MF_01039215, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1225), '}'), '')))), '[^-]', ''))) AS ?step2226) . BIND(((?step2226 + ?targetMotifMatchRegionMatchBeginPositionMF_01039216) - 1) AS ?thisPositionOn74) . BIND(?thisPositionOn74 AS ?thisPositionOn75) . BIND(?this AS ?pfs1t227) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn74))) AS ?pfsb70) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn75))) AS ?pfse71) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn74, 1) = 'K')) . BIND(URI(CONCAT(STR(?this), '#MF_01039a69')) AS ?annotation69) . BIND(?this AS ?pfs68) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch232 faldo:location ?templateMotifSequenceMatchRegionP62707233 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP62707235 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP62707MF_01039228 . ?templateMotifSequenceMatchRegionP62707233 faldo:begin ?templateMotifSequenceMatchBeginP62707234 . ?templateMotifSequenceMatchBeginP62707234 faldo:position ?templateMotifSequenceMatchBeginPositionP62707229 ; faldo:reference isoform:P62707-1 . ?templateMotifSequenceProfileAlignmentOperationP62707235 edam:has_input signature:MF_01039 ; rdf:type edam:operation_0300 . ?targetMotifMatch236 faldo:location ?targetMotifMatchRegionMatch237 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01039239 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP62707MF_01039230 . ?targetMotifMatchRegionMatch237 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01039238 . ?targetMotifMatchRegionMatchBeginMF_01039238 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01039231 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_01039239 edam:has_input signature:MF_01039 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP62707MF_01039228, 1, (STRLEN(?templateMotifCigarP62707MF_01039228) - STRLEN(REPLACE(?templateMotifCigarP62707MF_01039228, CONCAT('^(?:-*[^-]){', STR(((184 - ?templateMotifSequenceMatchBeginPositionP62707229) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1240) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP62707MF_01039230, 1, (STRLEN(?targetMotifMatchCigarP62707MF_01039230) - STRLEN(REPLACE(?targetMotifMatchCigarP62707MF_01039230, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1240), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP62707MF_01039230, 1, (STRLEN(?targetMotifMatchCigarP62707MF_01039230) - STRLEN(REPLACE(?targetMotifMatchCigarP62707MF_01039230, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1240), '}'), '')))), '[^-]', ''))) AS ?step2241) . BIND(((?step2241 + ?targetMotifMatchRegionMatchBeginPositionMF_01039231) - 1) AS ?thisPositionOn80) . BIND(?thisPositionOn80 AS ?thisPositionOn81) . BIND(?this AS ?pfs1t242) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn80))) AS ?pfsb78) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn81))) AS ?pfse79) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn80, 1) = 'H')) . BIND(URI(CONCAT(STR(?this), '#MF_01039a77')) AS ?annotation77) . BIND(?this AS ?pfs76) . } OPTIONAL { ?this a up:Protein . ?this up:organism ?thisOrganism . ?thisOrganism rdfs:subClassOf+ taxon:1224 . BIND(?this AS ?case7) . } }