CONSTRUCT { _:378987 up:source unirule:MF_01108 . _:378988 up:source unirule:MF_01108 . _:378989 up:source unirule:MF_01108 . _:378990 up:source unirule:MF_01108 . _:378991 up:source unirule:MF_01108 . _:378992 up:source unirule:MF_01108 . _:378993 up:source unirule:MF_01108 . _:378994 up:source unirule:MF_01108 . _:378995 up:source unirule:MF_01108 . _:378996 up:source unirule:MF_01108 . _:378997 up:source unirule:MF_01108 . _:378998 up:source unirule:MF_01108 . _:378999 up:source unirule:MF_01108 . _:379000 up:source unirule:MF_01108 . _:379001 up:source unirule:MF_01108 . _:379002 up:source unirule:MF_01108 . _:379003 up:source unirule:MF_01108 . _:379004 up:source unirule:MF_01108 . _:379005 up:source unirule:MF_01108 . _:379006 up:source unirule:MF_01108 . _:379007 up:source unirule:MF_01108 . _:379008 up:source unirule:MF_01108 . _:379009 up:source unirule:MF_01108 . _:379010 up:source unirule:MF_01108 . _:379011 up:source unirule:MF_01108 . _:379012 up:source unirule:MF_01108 . _:379013 up:source unirule:MF_01108 . _:379014 up:source unirule:MF_01108 . _:379015 up:source unirule:MF_01108 . _:379016 up:source unirule:MF_01108 . ?this up:alternativeName ?name1 ; up:annotation ?annotation3 , ?annotation4 , ?annotation6 , ?annotation7 , ?annotation8 , ?annotation9 , ?annotation10 , ?annotation12 ; up:classifiedWith GO:0005737 , GO:0006526 , GO:0008270 , GO:0008777 , keyword:170 , keyword:28 , keyword:378 , keyword:479 , keyword:55 , keyword:862 , keyword:963 ; up:recommendedName ?name0 . ?name0 up:ecName '3.5.1.16' ; up:fullName 'Acetylornithine deacetylase' ; up:shortName 'AO' , 'Acetylornithinase' ; rdf:type up:Structured_Name . ?name1 up:fullName 'N-acetylornithinase' ; up:shortName 'NAO' ; rdf:type up:Structured_Name . ?gene2 skos:prefLabel 'argE' . ?annotation3 a up:Function_Annotation ; rdfs:comment 'Catalyzes the hydrolysis of the amide bond of N(2)-acetylated L-amino acids. Cleaves the acetyl group from N-acetyl-L-ornithine to form L-ornithine, an intermediate in L-arginine biosynthesis pathway, and a branchpoint in the synthesis of polyamines.' . ?annotation4 up:activity ?activity5 ; rdf:type up:Catalytic_Activity_Annotation . ?activity5 up:catalyticActivity <http://rdf.rhea-db.org/15941>; up:enzymeClass <http://purl.uniprot.org/enzyme/3.5.1.16>. ?annotation6 up:cofactor chebi:29105 , chebi:48828 ; rdf:type up:Cofactor_Annotation ; rdfs:comment 'Binds 2 Zn(2+) or Co(2+) ions per subunit.' . ?annotation7 up:cofactor chebi:57925 ; rdf:type up:Cofactor_Annotation . ?annotation8 a up:Pathway_Annotation ; rdfs:comment 'Amino-acid biosynthesis; L-arginine biosynthesis; L-ornithine from N(2)-acetyl-L-ornithine (linear): step 1/1.' . ?annotation9 a up:Subunit_Annotation ; rdfs:comment 'Homodimer.' . ?annotation10 a up:Subcellular_Location_Annotation . ?annotation10li11 up:cellularComponent <http://purl.uniprot.org/locations/null>. ?annotation12 a up:Similarity_Annotation ; rdfs:comment 'Belongs to the peptidase M20A family. ArgE subfamily.' . ?pfs13 up:annotation ?annotation14 . ?annotation14 faldo:begin ?pfsb15 ; faldo:end ?pfse16 ; rdf:type up:Active_Site_Annotation . ?pfsb15 faldo:position ?thisPositionOn17 ; rdf:type faldo:ExactPosition . ?pfse16 faldo:position ?thisPositionOn18 ; rdf:type faldo:ExactPosition . ?pfs19 up:annotation ?annotation20 . ?annotation20 faldo:begin ?pfsb21 ; faldo:end ?pfse22 ; rdf:type up:Active_Site_Annotation . ?pfsb21 faldo:position ?thisPositionOn23 ; rdf:type faldo:ExactPosition . ?pfse22 faldo:position ?thisPositionOn24 ; rdf:type faldo:ExactPosition . ?pfs25 up:annotation ?annotation26 . ?annotation26 faldo:begin ?pfsb27 ; faldo:end ?pfse28 ; up:ligand ?ligand29 ; rdf:type up:Binding_Site_Annotation . ?pfsb27 faldo:position ?thisPositionOn30 ; rdf:type faldo:ExactPosition . ?pfse28 faldo:position ?thisPositionOn31 ; rdf:type faldo:ExactPosition . ?ligand29 rdfs:subClassOf chebi:29105 . ?pfs32 up:annotation ?annotation33 . ?annotation33 faldo:begin ?pfsb34 ; faldo:end ?pfse35 ; up:ligand ?ligand36 ; rdf:type up:Binding_Site_Annotation . ?pfsb34 faldo:position ?thisPositionOn37 ; rdf:type faldo:ExactPosition . ?pfse35 faldo:position ?thisPositionOn38 ; rdf:type faldo:ExactPosition . ?ligand36 rdfs:subClassOf chebi:29105 . ?pfs39 up:annotation ?annotation40 . ?annotation40 faldo:begin ?pfsb41 ; faldo:end ?pfse42 ; up:ligand ?ligand43 ; rdf:type up:Binding_Site_Annotation . ?pfsb41 faldo:position ?thisPositionOn44 ; rdf:type faldo:ExactPosition . ?pfse42 faldo:position ?thisPositionOn45 ; rdf:type faldo:ExactPosition . ?ligand43 rdfs:subClassOf chebi:29105 . ?pfs46 up:annotation ?annotation47 . ?annotation47 faldo:begin ?pfsb48 ; faldo:end ?pfse49 ; up:ligand ?ligand50 ; rdf:type up:Binding_Site_Annotation . ?pfsb48 faldo:position ?thisPositionOn51 ; rdf:type faldo:ExactPosition . ?pfse49 faldo:position ?thisPositionOn52 ; rdf:type faldo:ExactPosition . ?ligand50 rdfs:subClassOf chebi:29105 . ?pfs53 up:annotation ?annotation54 . ?annotation54 faldo:begin ?pfsb55 ; faldo:end ?pfse56 ; up:ligand ?ligand57 ; rdf:type up:Binding_Site_Annotation . ?pfsb55 faldo:position ?thisPositionOn58 ; rdf:type faldo:ExactPosition . ?pfse56 faldo:position ?thisPositionOn59 ; rdf:type faldo:ExactPosition . ?ligand57 rdfs:subClassOf chebi:29105 . ?pfs60 up:annotation ?annotation61 . ?annotation61 faldo:begin ?pfsb62 ; faldo:end ?pfse63 ; up:ligand ?ligand64 ; rdf:type up:Binding_Site_Annotation . ?pfsb62 faldo:position ?thisPositionOn65 ; rdf:type faldo:ExactPosition . ?pfse63 faldo:position ?thisPositionOn66 ; rdf:type faldo:ExactPosition . ?ligand64 rdfs:subClassOf chebi:29105 . _:379017 a rdf:Statement ; up:attribution _:378987 ; rdf:subject ?this ; rdf:predicate up:recommendedName ; rdf:object ?name0 . _:379018 a rdf:Statement ; up:attribution _:378988 ; rdf:subject ?this ; rdf:predicate up:alternativeName ; rdf:object ?name1 . _:379019 a rdf:Statement ; up:attribution _:378989 ; rdf:subject ?gene2 ; rdf:predicate up:encodedBy ; rdf:object ?gene2 . _:379020 a rdf:Statement ; up:attribution _:378990 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation3 . _:379021 a rdf:Statement ; up:attribution _:378991 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation4 . _:379022 a rdf:Statement ; up:attribution _:378992 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation6 . _:379023 a rdf:Statement ; up:attribution _:378993 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation7 . _:379024 a rdf:Statement ; up:attribution _:378994 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation8 . _:379025 a rdf:Statement ; up:attribution _:378995 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation9 . _:379026 a rdf:Statement ; up:attribution _:378996 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation10 . _:379027 a rdf:Statement ; up:attribution _:378997 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation12 . _:379028 a rdf:Statement ; up:attribution _:378998 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:963 . _:379029 a rdf:Statement ; up:attribution _:378999 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:28 . _:379030 a rdf:Statement ; up:attribution _:379000 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:55 . _:379031 a rdf:Statement ; up:attribution _:379001 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:378 . _:379032 a rdf:Statement ; up:attribution _:379002 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:479 . _:379033 a rdf:Statement ; up:attribution _:379003 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:170 . _:379034 a rdf:Statement ; up:attribution _:379004 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:862 . _:379035 a rdf:Statement ; up:attribution _:379005 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object GO:0008777 . _:379036 a rdf:Statement ; up:attribution _:379006 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object GO:0008270 . _:379037 a rdf:Statement ; up:attribution _:379007 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object GO:0006526 . _:379038 a rdf:Statement ; up:attribution _:379008 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object GO:0005737 . _:379039 a rdf:Statement ; up:source unirule:MF_01108 ; rdf:subject ?pfs13 ; rdf:predicate up:annotation ; rdf:object ?annotation14 . _:379040 a rdf:Statement ; up:attribution _:379009 ; rdf:subject ?pfs13 ; rdf:predicate up:annotation ; rdf:object ?annotation14 . _:379041 a rdf:Statement ; up:source unirule:MF_01108 ; rdf:subject ?pfs19 ; rdf:predicate up:annotation ; rdf:object ?annotation20 . _:379042 a rdf:Statement ; up:attribution _:379010 ; rdf:subject ?pfs19 ; rdf:predicate up:annotation ; rdf:object ?annotation20 . _:379043 a rdf:Statement ; up:source unirule:MF_01108 ; rdf:subject ?pfs25 ; rdf:predicate up:annotation ; rdf:object ?annotation26 . _:379044 a rdf:Statement ; up:attribution _:379011 ; rdf:subject ?pfs25 ; rdf:predicate up:annotation ; rdf:object ?annotation26 . _:379045 a rdf:Statement ; up:source unirule:MF_01108 ; rdf:subject ?pfs32 ; rdf:predicate up:annotation ; rdf:object ?annotation33 . _:379046 a rdf:Statement ; up:attribution _:379012 ; rdf:subject ?pfs32 ; rdf:predicate up:annotation ; rdf:object ?annotation33 . _:379047 a rdf:Statement ; up:source unirule:MF_01108 ; rdf:subject ?pfs39 ; rdf:predicate up:annotation ; rdf:object ?annotation40 . _:379048 a rdf:Statement ; up:attribution _:379013 ; rdf:subject ?pfs39 ; rdf:predicate up:annotation ; rdf:object ?annotation40 . _:379049 a rdf:Statement ; up:source unirule:MF_01108 ; rdf:subject ?pfs46 ; rdf:predicate up:annotation ; rdf:object ?annotation47 . _:379050 a rdf:Statement ; up:attribution _:379014 ; rdf:subject ?pfs46 ; rdf:predicate up:annotation ; rdf:object ?annotation47 . _:379051 a rdf:Statement ; up:source unirule:MF_01108 ; rdf:subject ?pfs53 ; rdf:predicate up:annotation ; rdf:object ?annotation54 . _:379052 a rdf:Statement ; up:attribution _:379015 ; rdf:subject ?pfs53 ; rdf:predicate up:annotation ; rdf:object ?annotation54 . _:379053 a rdf:Statement ; up:source unirule:MF_01108 ; rdf:subject ?pfs60 ; rdf:predicate up:annotation ; rdf:object ?annotation61 . _:379054 a rdf:Statement ; up:attribution _:379016 ; rdf:subject ?pfs60 ; rdf:predicate up:annotation ; rdf:object ?annotation61 . } WHERE { #baseURI: http://purl.uniprot.org/unirule/MF_01108 #Rule MF_01108 Created by:tlima on:2003-03-27 Modified by:ecastro on:2023-06-01 VALUES ?supertaxon67 {taxon:91347 taxon:135623} ?this up:organism ?thisOrganism ; rdfs:seeAlso signature:MF_01108 . ?thisOrganism rdfs:subClassOf+ ?supertaxon67 . BIND(URI(CONCAT(STR(?this), '#MF_01108a0')) AS ?name0) . BIND(URI(CONCAT(STR(?this), '#MF_01108a1')) AS ?name1) . BIND(URI(CONCAT(STR(?this), '#MF_01108a3')) AS ?annotation3) . BIND(URI(CONCAT(STR(?this), '#MF_01108a4')) AS ?annotation4) . BIND(URI(CONCAT(STR(?this), '#MF_01108a6')) AS ?annotation6) . BIND(URI(CONCAT(STR(?this), '#MF_01108a7')) AS ?annotation7) . BIND(URI(CONCAT(STR(?this), '#MF_01108a8')) AS ?annotation8) . BIND(URI(CONCAT(STR(?this), '#MF_01108a9')) AS ?annotation9) . BIND(URI(CONCAT(STR(?this), '#MF_01108a10')) AS ?annotation10) . BIND(URI(CONCAT(STR(?this), '#MF_01108a12')) AS ?annotation12) . OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch72 faldo:location ?templateMotifSequenceMatchRegionP2390873 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP2390875 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP23908MF_0110868 . ?templateMotifSequenceMatchRegionP2390873 faldo:begin ?templateMotifSequenceMatchBeginP2390874 . ?templateMotifSequenceMatchBeginP2390874 faldo:position ?templateMotifSequenceMatchBeginPositionP2390869 ; faldo:reference isoform:P23908-1 . ?templateMotifSequenceProfileAlignmentOperationP2390875 edam:has_input signature:MF_01108 ; rdf:type edam:operation_0300 . ?targetMotifMatch76 faldo:location ?targetMotifMatchRegionMatch77 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0110879 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP23908MF_0110870 . ?targetMotifMatchRegionMatch77 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0110878 . ?targetMotifMatchRegionMatchBeginMF_0110878 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0110871 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_0110879 edam:has_input signature:MF_01108 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP23908MF_0110868, 1, (STRLEN(?templateMotifCigarP23908MF_0110868) - STRLEN(REPLACE(?templateMotifCigarP23908MF_0110868, CONCAT('^(?:-*[^-]){', STR(((82 - ?templateMotifSequenceMatchBeginPositionP2390869) + 1)), '}'), '')))), '[a-z]', '')) AS ?step180) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP23908MF_0110870, 1, (STRLEN(?targetMotifMatchCigarP23908MF_0110870) - STRLEN(REPLACE(?targetMotifMatchCigarP23908MF_0110870, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step180), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP23908MF_0110870, 1, (STRLEN(?targetMotifMatchCigarP23908MF_0110870) - STRLEN(REPLACE(?targetMotifMatchCigarP23908MF_0110870, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step180), '}'), '')))), '[^-]', ''))) AS ?step281) . BIND(((?step281 + ?targetMotifMatchRegionMatchBeginPositionMF_0110871) - 1) AS ?thisPositionOn17) . BIND(?thisPositionOn17 AS ?thisPositionOn18) . BIND(?this AS ?pfs1t82) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn17))) AS ?pfsb15) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn18))) AS ?pfse16) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn17, 1) = 'D')) . BIND(URI(CONCAT(STR(?this), '#MF_01108a14')) AS ?annotation14) . BIND(?this AS ?pfs13) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch87 faldo:location ?templateMotifSequenceMatchRegionP2390888 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP2390890 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP23908MF_0110883 . ?templateMotifSequenceMatchRegionP2390888 faldo:begin ?templateMotifSequenceMatchBeginP2390889 . ?templateMotifSequenceMatchBeginP2390889 faldo:position ?templateMotifSequenceMatchBeginPositionP2390884 ; faldo:reference isoform:P23908-1 . ?templateMotifSequenceProfileAlignmentOperationP2390890 edam:has_input signature:MF_01108 ; rdf:type edam:operation_0300 . ?targetMotifMatch91 faldo:location ?targetMotifMatchRegionMatch92 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0110894 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP23908MF_0110885 . ?targetMotifMatchRegionMatch92 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0110893 . ?targetMotifMatchRegionMatchBeginMF_0110893 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0110886 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_0110894 edam:has_input signature:MF_01108 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP23908MF_0110883, 1, (STRLEN(?templateMotifCigarP23908MF_0110883) - STRLEN(REPLACE(?templateMotifCigarP23908MF_0110883, CONCAT('^(?:-*[^-]){', STR(((144 - ?templateMotifSequenceMatchBeginPositionP2390884) + 1)), '}'), '')))), '[a-z]', '')) AS ?step195) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP23908MF_0110885, 1, (STRLEN(?targetMotifMatchCigarP23908MF_0110885) - STRLEN(REPLACE(?targetMotifMatchCigarP23908MF_0110885, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step195), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP23908MF_0110885, 1, (STRLEN(?targetMotifMatchCigarP23908MF_0110885) - STRLEN(REPLACE(?targetMotifMatchCigarP23908MF_0110885, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step195), '}'), '')))), '[^-]', ''))) AS ?step296) . BIND(((?step296 + ?targetMotifMatchRegionMatchBeginPositionMF_0110886) - 1) AS ?thisPositionOn23) . BIND(?thisPositionOn23 AS ?thisPositionOn24) . BIND(?this AS ?pfs1t97) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn23))) AS ?pfsb21) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn24))) AS ?pfse22) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn23, 1) = 'E')) . BIND(URI(CONCAT(STR(?this), '#MF_01108a20')) AS ?annotation20) . BIND(?this AS ?pfs19) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch102 faldo:location ?templateMotifSequenceMatchRegionP23908103 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP23908105 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP23908MF_0110898 . ?templateMotifSequenceMatchRegionP23908103 faldo:begin ?templateMotifSequenceMatchBeginP23908104 . ?templateMotifSequenceMatchBeginP23908104 faldo:position ?templateMotifSequenceMatchBeginPositionP2390899 ; faldo:reference isoform:P23908-1 . ?templateMotifSequenceProfileAlignmentOperationP23908105 edam:has_input signature:MF_01108 ; rdf:type edam:operation_0300 . ?targetMotifMatch106 faldo:location ?targetMotifMatchRegionMatch107 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01108109 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP23908MF_01108100 . ?targetMotifMatchRegionMatch107 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01108108 . ?targetMotifMatchRegionMatchBeginMF_01108108 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01108101 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_01108109 edam:has_input signature:MF_01108 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP23908MF_0110898, 1, (STRLEN(?templateMotifCigarP23908MF_0110898) - STRLEN(REPLACE(?templateMotifCigarP23908MF_0110898, CONCAT('^(?:-*[^-]){', STR(((80 - ?templateMotifSequenceMatchBeginPositionP2390899) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1110) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP23908MF_01108100, 1, (STRLEN(?targetMotifMatchCigarP23908MF_01108100) - STRLEN(REPLACE(?targetMotifMatchCigarP23908MF_01108100, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1110), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP23908MF_01108100, 1, (STRLEN(?targetMotifMatchCigarP23908MF_01108100) - STRLEN(REPLACE(?targetMotifMatchCigarP23908MF_01108100, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1110), '}'), '')))), '[^-]', ''))) AS ?step2111) . BIND(((?step2111 + ?targetMotifMatchRegionMatchBeginPositionMF_01108101) - 1) AS ?thisPositionOn30) . BIND(?thisPositionOn30 AS ?thisPositionOn31) . BIND(?this AS ?pfs1t112) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn30))) AS ?pfsb27) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn31))) AS ?pfse28) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn30, 1) = 'H')) . BIND(URI(CONCAT(STR(?this), '#MF_01108a26')) AS ?annotation26) . BIND(?this AS ?pfs25) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch117 faldo:location ?templateMotifSequenceMatchRegionP23908118 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP23908120 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP23908MF_01108113 . ?templateMotifSequenceMatchRegionP23908118 faldo:begin ?templateMotifSequenceMatchBeginP23908119 . ?templateMotifSequenceMatchBeginP23908119 faldo:position ?templateMotifSequenceMatchBeginPositionP23908114 ; faldo:reference isoform:P23908-1 . ?templateMotifSequenceProfileAlignmentOperationP23908120 edam:has_input signature:MF_01108 ; rdf:type edam:operation_0300 . ?targetMotifMatch121 faldo:location ?targetMotifMatchRegionMatch122 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01108124 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP23908MF_01108115 . ?targetMotifMatchRegionMatch122 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01108123 . ?targetMotifMatchRegionMatchBeginMF_01108123 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01108116 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_01108124 edam:has_input signature:MF_01108 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP23908MF_01108113, 1, (STRLEN(?templateMotifCigarP23908MF_01108113) - STRLEN(REPLACE(?templateMotifCigarP23908MF_01108113, CONCAT('^(?:-*[^-]){', STR(((112 - ?templateMotifSequenceMatchBeginPositionP23908114) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1125) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP23908MF_01108115, 1, (STRLEN(?targetMotifMatchCigarP23908MF_01108115) - STRLEN(REPLACE(?targetMotifMatchCigarP23908MF_01108115, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1125), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP23908MF_01108115, 1, (STRLEN(?targetMotifMatchCigarP23908MF_01108115) - STRLEN(REPLACE(?targetMotifMatchCigarP23908MF_01108115, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1125), '}'), '')))), '[^-]', ''))) AS ?step2126) . BIND(((?step2126 + ?targetMotifMatchRegionMatchBeginPositionMF_01108116) - 1) AS ?thisPositionOn37) . BIND(?thisPositionOn37 AS ?thisPositionOn38) . BIND(?this AS ?pfs1t127) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn37))) AS ?pfsb34) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn38))) AS ?pfse35) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn37, 1) = 'D')) . BIND(URI(CONCAT(STR(?this), '#MF_01108a33')) AS ?annotation33) . BIND(?this AS ?pfs32) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch132 faldo:location ?templateMotifSequenceMatchRegionP23908133 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP23908135 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP23908MF_01108128 . ?templateMotifSequenceMatchRegionP23908133 faldo:begin ?templateMotifSequenceMatchBeginP23908134 . ?templateMotifSequenceMatchBeginP23908134 faldo:position ?templateMotifSequenceMatchBeginPositionP23908129 ; faldo:reference isoform:P23908-1 . ?templateMotifSequenceProfileAlignmentOperationP23908135 edam:has_input signature:MF_01108 ; rdf:type edam:operation_0300 . ?targetMotifMatch136 faldo:location ?targetMotifMatchRegionMatch137 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01108139 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP23908MF_01108130 . ?targetMotifMatchRegionMatch137 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01108138 . ?targetMotifMatchRegionMatchBeginMF_01108138 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01108131 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_01108139 edam:has_input signature:MF_01108 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP23908MF_01108128, 1, (STRLEN(?templateMotifCigarP23908MF_01108128) - STRLEN(REPLACE(?templateMotifCigarP23908MF_01108128, CONCAT('^(?:-*[^-]){', STR(((112 - ?templateMotifSequenceMatchBeginPositionP23908129) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1140) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP23908MF_01108130, 1, (STRLEN(?targetMotifMatchCigarP23908MF_01108130) - STRLEN(REPLACE(?targetMotifMatchCigarP23908MF_01108130, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1140), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP23908MF_01108130, 1, (STRLEN(?targetMotifMatchCigarP23908MF_01108130) - STRLEN(REPLACE(?targetMotifMatchCigarP23908MF_01108130, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1140), '}'), '')))), '[^-]', ''))) AS ?step2141) . BIND(((?step2141 + ?targetMotifMatchRegionMatchBeginPositionMF_01108131) - 1) AS ?thisPositionOn44) . BIND(?thisPositionOn44 AS ?thisPositionOn45) . BIND(?this AS ?pfs1t142) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn44))) AS ?pfsb41) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn45))) AS ?pfse42) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn44, 1) = 'D')) . BIND(URI(CONCAT(STR(?this), '#MF_01108a40')) AS ?annotation40) . BIND(?this AS ?pfs39) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch147 faldo:location ?templateMotifSequenceMatchRegionP23908148 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP23908150 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP23908MF_01108143 . ?templateMotifSequenceMatchRegionP23908148 faldo:begin ?templateMotifSequenceMatchBeginP23908149 . ?templateMotifSequenceMatchBeginP23908149 faldo:position ?templateMotifSequenceMatchBeginPositionP23908144 ; faldo:reference isoform:P23908-1 . ?templateMotifSequenceProfileAlignmentOperationP23908150 edam:has_input signature:MF_01108 ; rdf:type edam:operation_0300 . ?targetMotifMatch151 faldo:location ?targetMotifMatchRegionMatch152 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01108154 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP23908MF_01108145 . ?targetMotifMatchRegionMatch152 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01108153 . ?targetMotifMatchRegionMatchBeginMF_01108153 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01108146 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_01108154 edam:has_input signature:MF_01108 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP23908MF_01108143, 1, (STRLEN(?templateMotifCigarP23908MF_01108143) - STRLEN(REPLACE(?templateMotifCigarP23908MF_01108143, CONCAT('^(?:-*[^-]){', STR(((145 - ?templateMotifSequenceMatchBeginPositionP23908144) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1155) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP23908MF_01108145, 1, (STRLEN(?targetMotifMatchCigarP23908MF_01108145) - STRLEN(REPLACE(?targetMotifMatchCigarP23908MF_01108145, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1155), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP23908MF_01108145, 1, (STRLEN(?targetMotifMatchCigarP23908MF_01108145) - STRLEN(REPLACE(?targetMotifMatchCigarP23908MF_01108145, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1155), '}'), '')))), '[^-]', ''))) AS ?step2156) . BIND(((?step2156 + ?targetMotifMatchRegionMatchBeginPositionMF_01108146) - 1) AS ?thisPositionOn51) . BIND(?thisPositionOn51 AS ?thisPositionOn52) . BIND(?this AS ?pfs1t157) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn51))) AS ?pfsb48) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn52))) AS ?pfse49) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn51, 1) = 'E')) . BIND(URI(CONCAT(STR(?this), '#MF_01108a47')) AS ?annotation47) . BIND(?this AS ?pfs46) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch162 faldo:location ?templateMotifSequenceMatchRegionP23908163 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP23908165 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP23908MF_01108158 . ?templateMotifSequenceMatchRegionP23908163 faldo:begin ?templateMotifSequenceMatchBeginP23908164 . ?templateMotifSequenceMatchBeginP23908164 faldo:position ?templateMotifSequenceMatchBeginPositionP23908159 ; faldo:reference isoform:P23908-1 . ?templateMotifSequenceProfileAlignmentOperationP23908165 edam:has_input signature:MF_01108 ; rdf:type edam:operation_0300 . ?targetMotifMatch166 faldo:location ?targetMotifMatchRegionMatch167 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01108169 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP23908MF_01108160 . ?targetMotifMatchRegionMatch167 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01108168 . ?targetMotifMatchRegionMatchBeginMF_01108168 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01108161 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_01108169 edam:has_input signature:MF_01108 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP23908MF_01108158, 1, (STRLEN(?templateMotifCigarP23908MF_01108158) - STRLEN(REPLACE(?templateMotifCigarP23908MF_01108158, CONCAT('^(?:-*[^-]){', STR(((169 - ?templateMotifSequenceMatchBeginPositionP23908159) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1170) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP23908MF_01108160, 1, (STRLEN(?targetMotifMatchCigarP23908MF_01108160) - STRLEN(REPLACE(?targetMotifMatchCigarP23908MF_01108160, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1170), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP23908MF_01108160, 1, (STRLEN(?targetMotifMatchCigarP23908MF_01108160) - STRLEN(REPLACE(?targetMotifMatchCigarP23908MF_01108160, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1170), '}'), '')))), '[^-]', ''))) AS ?step2171) . BIND(((?step2171 + ?targetMotifMatchRegionMatchBeginPositionMF_01108161) - 1) AS ?thisPositionOn58) . BIND(?thisPositionOn58 AS ?thisPositionOn59) . BIND(?this AS ?pfs1t172) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn58))) AS ?pfsb55) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn59))) AS ?pfse56) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn58, 1) = 'E')) . BIND(URI(CONCAT(STR(?this), '#MF_01108a54')) AS ?annotation54) . BIND(?this AS ?pfs53) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch177 faldo:location ?templateMotifSequenceMatchRegionP23908178 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP23908180 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP23908MF_01108173 . ?templateMotifSequenceMatchRegionP23908178 faldo:begin ?templateMotifSequenceMatchBeginP23908179 . ?templateMotifSequenceMatchBeginP23908179 faldo:position ?templateMotifSequenceMatchBeginPositionP23908174 ; faldo:reference isoform:P23908-1 . ?templateMotifSequenceProfileAlignmentOperationP23908180 edam:has_input signature:MF_01108 ; rdf:type edam:operation_0300 . ?targetMotifMatch181 faldo:location ?targetMotifMatchRegionMatch182 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01108184 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP23908MF_01108175 . ?targetMotifMatchRegionMatch182 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01108183 . ?targetMotifMatchRegionMatchBeginMF_01108183 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01108176 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_01108184 edam:has_input signature:MF_01108 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP23908MF_01108173, 1, (STRLEN(?templateMotifCigarP23908MF_01108173) - STRLEN(REPLACE(?templateMotifCigarP23908MF_01108173, CONCAT('^(?:-*[^-]){', STR(((355 - ?templateMotifSequenceMatchBeginPositionP23908174) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1185) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP23908MF_01108175, 1, (STRLEN(?targetMotifMatchCigarP23908MF_01108175) - STRLEN(REPLACE(?targetMotifMatchCigarP23908MF_01108175, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1185), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP23908MF_01108175, 1, (STRLEN(?targetMotifMatchCigarP23908MF_01108175) - STRLEN(REPLACE(?targetMotifMatchCigarP23908MF_01108175, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1185), '}'), '')))), '[^-]', ''))) AS ?step2186) . BIND(((?step2186 + ?targetMotifMatchRegionMatchBeginPositionMF_01108176) - 1) AS ?thisPositionOn65) . BIND(?thisPositionOn65 AS ?thisPositionOn66) . BIND(?this AS ?pfs1t187) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn65))) AS ?pfsb62) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn66))) AS ?pfse63) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn65, 1) = 'H')) . BIND(URI(CONCAT(STR(?this), '#MF_01108a61')) AS ?annotation61) . BIND(?this AS ?pfs60) . } }