CONSTRUCT { _:400723 up:source unirule:MF_01166 . _:400724 up:ecName '2.1.2.13' ; up:fullName 'UDP-4-amino-4-deoxy-L-arabinose formyltransferase' ; rdf:type up:Structured_Name . _:400725 up:fullName 'ArnAFT' ; rdf:type up:Structured_Name . _:400726 up:fullName 'UDP-L-Ara4N formyltransferase' ; rdf:type up:Structured_Name . _:400727 up:source unirule:MF_01166 . _:400728 up:ecName '1.1.1.305' ; up:fullName 'UDP-glucuronic acid oxidase, UDP-4-keto-hexauronic acid decarboxylating' ; rdf:type up:Structured_Name . _:400729 up:fullName 'ArnADH' ; rdf:type up:Structured_Name . _:400730 up:fullName 'UDP-GlcUA decarboxylase' ; rdf:type up:Structured_Name . _:400731 up:fullName 'UDP-glucuronic acid dehydrogenase' ; rdf:type up:Structured_Name . _:400732 up:source unirule:MF_01166 . _:400733 up:source unirule:MF_01166 . _:400734 up:source unirule:MF_01166 . _:400735 up:source unirule:MF_01166 . _:400736 up:source unirule:MF_01166 . _:400737 up:source unirule:MF_01166 . _:400738 up:source unirule:MF_01166 . _:400739 up:source unirule:MF_01166 . _:400740 up:source unirule:MF_01166 . _:400741 up:source unirule:MF_01166 . _:400742 up:source unirule:MF_01166 . _:400743 up:source unirule:MF_01166 . _:400744 up:source unirule:MF_01166 . _:400745 up:source unirule:MF_01166 . _:400746 up:source unirule:MF_01166 . _:400747 up:source unirule:MF_01166 . _:400748 up:source unirule:MF_01166 . _:400749 up:source unirule:MF_01166 . _:400750 up:source unirule:MF_01166 . _:400751 up:source unirule:MF_01166 . _:400752 up:source unirule:MF_01166 . _:400753 up:source unirule:MF_01166 . _:400754 up:source unirule:MF_01166 . _:400755 up:source unirule:MF_01166 . _:400756 up:source unirule:MF_01166 . _:400757 up:source unirule:MF_01166 . _:400758 up:source unirule:MF_01166 . _:400759 up:source unirule:MF_01166 . _:400760 up:source unirule:MF_01166 . _:400761 up:source unirule:MF_01166 . _:400762 up:source unirule:MF_01166 . _:400763 up:source unirule:MF_01166 . _:400764 up:source unirule:MF_01166 . _:400765 up:source unirule:MF_01166 . _:400766 up:source unirule:MF_01166 . _:400767 up:source unirule:MF_01166 . _:400768 up:source unirule:MF_01166 . _:400769 up:source unirule:MF_01166 . _:400770 up:source unirule:MF_01166 . _:400771 up:source unirule:MF_01166 . _:400772 up:source unirule:MF_01166 . _:400773 up:source unirule:MF_01166 . _:400774 up:source unirule:MF_01166 . ?this up:annotation ?annotation4 , ?annotation5 , ?annotation7 , ?annotation9 , ?annotation10 , ?annotation11 , ?annotation12 , ?annotation13 , ?annotation14 ; up:classifiedWith GO:0009103 , GO:0016616 , GO:0016742 , GO:0046493 , keyword:441 , keyword:443 , keyword:444 , keyword:448 , keyword:46 , keyword:511 , keyword:520 , keyword:560 , keyword:808 ; up:domain ?namedpart1 , ?namedpart2 ; up:recommendedName ?name0 . ?name0 up:fullName 'Bifunctional polymyxin resistance protein ArnA' ; rdf:type up:Structured_Name . ?namedpart1 up:alternativeName _:400725 , _:400726 ; up:recommendedName _:400724 . ?namedpart2 up:alternativeName _:400729 , _:400730 , _:400731 ; up:recommendedName _:400728 . ?gene3 skos:prefLabel 'arnA' . ?annotation4 a up:Function_Annotation ; rdfs:comment 'Bifunctional enzyme that catalyzes the oxidative decarboxylation of UDP-glucuronic acid (UDP-GlcUA) to UDP-4-keto-arabinose (UDP-Ara4O) and the addition of a formyl group to UDP-4-amino-4-deoxy-L-arabinose (UDP-L-Ara4N) to form UDP-L-4-formamido-arabinose (UDP-L-Ara4FN). The modified arabinose is attached to lipid A and is required for resistance to polymyxin and cationic antimicrobial peptides.' . ?annotation5 up:activity ?activity6 ; rdf:type up:Catalytic_Activity_Annotation . ?activity6 up:catalyticActivity <http://rdf.rhea-db.org/24702>; up:enzymeClass <http://purl.uniprot.org/enzyme/1.1.1.305>. ?annotation7 up:activity ?activity8 ; rdf:type up:Catalytic_Activity_Annotation . ?activity8 up:catalyticActivity <http://rdf.rhea-db.org/24706>; up:enzymeClass <http://purl.uniprot.org/enzyme/2.1.2.13>. ?annotation9 a up:Pathway_Annotation ; rdfs:comment 'Nucleotide-sugar biosynthesis; UDP-4-deoxy-4-formamido-beta-L-arabinose biosynthesis; UDP-4-deoxy-4-formamido-beta-L-arabinose from UDP-alpha-D-glucuronate: step 1/3.' . ?annotation10 a up:Pathway_Annotation ; rdfs:comment 'Nucleotide-sugar biosynthesis; UDP-4-deoxy-4-formamido-beta-L-arabinose biosynthesis; UDP-4-deoxy-4-formamido-beta-L-arabinose from UDP-alpha-D-glucuronate: step 3/3.' . ?annotation11 a up:Pathway_Annotation ; rdfs:comment 'Bacterial outer membrane biogenesis; lipopolysaccharide biosynthesis.' . ?annotation12 a up:Subunit_Annotation ; rdfs:comment 'Homohexamer, formed by a dimer of trimers.' . ?annotation13 a up:Similarity_Annotation ; rdfs:comment 'In the N-terminal section; belongs to the Fmt family. UDP-L-Ara4N formyltransferase subfamily.' . ?annotation14 a up:Similarity_Annotation ; rdfs:comment 'In the C-terminal section; belongs to the NAD(P)-dependent epimerase/dehydratase family. UDP-glucuronic acid decarboxylase subfamily.' . ?pfs15 up:annotation ?annotation16 . ?annotation16 faldo:begin ?pfsb17 ; faldo:end ?pfse18 ; rdf:type up:Region_Annotation ; rdfs:comment 'Formyltransferase ArnAFT' . ?pfsb17 faldo:position ?thisPositionOn19 ; rdf:type faldo:ExactPosition . ?pfse18 faldo:position ?thisPositionOn20 ; rdf:type faldo:ExactPosition . ?pfs21 up:annotation ?annotation22 . ?annotation22 faldo:begin ?pfsb23 ; faldo:end ?pfse24 ; rdf:type up:Region_Annotation ; rdfs:comment 'Dehydrogenase ArnADH' . ?pfsb23 faldo:position ?thisPositionOn25 ; rdf:type faldo:ExactPosition . ?pfse24 faldo:position ?thisPositionOn26 ; rdf:type faldo:ExactPosition . ?pfs27 up:annotation ?annotation28 . ?annotation28 faldo:begin ?pfsb29 ; faldo:end ?pfse30 ; up:ligand ?ligand31 ; rdf:type up:Binding_Site_Annotation . ?pfsb29 faldo:position ?thisPositionOn32 ; rdf:type faldo:ExactPosition . ?pfse30 faldo:position ?thisPositionOn33 ; rdf:type faldo:ExactPosition . ?ligand31 rdfs:subClassOf chebi:57540 . ?pfs34 up:annotation ?annotation35 . ?annotation35 faldo:begin ?pfsb36 ; faldo:end ?pfse37 ; up:ligand ?ligand38 ; rdf:type up:Binding_Site_Annotation . ?pfsb36 faldo:position ?thisPositionOn39 ; rdf:type faldo:ExactPosition . ?pfse37 faldo:position ?thisPositionOn40 ; rdf:type faldo:ExactPosition . ?ligand38 rdfs:subClassOf chebi:195366 . ?pfs41 up:annotation ?annotation42 . ?annotation42 faldo:begin ?pfsb43 ; faldo:end ?pfse44 ; up:ligand ?ligand45 ; rdf:type up:Binding_Site_Annotation . ?pfsb43 faldo:position ?thisPositionOn46 ; rdf:type faldo:ExactPosition . ?pfse44 faldo:position ?thisPositionOn47 ; rdf:type faldo:ExactPosition . ?ligand45 rdfs:subClassOf chebi:195366 . ?pfs48 up:annotation ?annotation49 . ?annotation49 faldo:begin ?pfsb50 ; faldo:end ?pfse51 ; up:ligand ?ligand52 ; rdf:type up:Binding_Site_Annotation . ?pfsb50 faldo:position ?thisPositionOn53 ; rdf:type faldo:ExactPosition . ?pfse51 faldo:position ?thisPositionOn54 ; rdf:type faldo:ExactPosition . ?ligand52 rdfs:subClassOf chebi:58052 . ?pfs55 up:annotation ?annotation56 . ?annotation56 faldo:begin ?pfsb57 ; faldo:end ?pfse58 ; up:ligand ?ligand59 ; rdf:type up:Binding_Site_Annotation . ?pfsb57 faldo:position ?thisPositionOn60 ; rdf:type faldo:ExactPosition . ?pfse58 faldo:position ?thisPositionOn61 ; rdf:type faldo:ExactPosition . ?ligand59 rdfs:subClassOf chebi:58052 . ?pfs62 up:annotation ?annotation63 . ?annotation63 faldo:begin ?pfsb64 ; faldo:end ?pfse65 ; rdf:type up:Active_Site_Annotation ; rdfs:comment 'Proton donor; for formyltransferase activity' . ?pfsb64 faldo:position ?thisPositionOn66 ; rdf:type faldo:ExactPosition . ?pfse65 faldo:position ?thisPositionOn67 ; rdf:type faldo:ExactPosition . ?pfs68 up:annotation ?annotation69 . ?annotation69 faldo:begin ?pfsb70 ; faldo:end ?pfse71 ; rdf:type up:Active_Site_Annotation ; rdfs:comment 'Proton acceptor; for decarboxylase activity' . ?pfsb70 faldo:position ?thisPositionOn72 ; rdf:type faldo:ExactPosition . ?pfse71 faldo:position ?thisPositionOn73 ; rdf:type faldo:ExactPosition . ?pfs74 up:annotation ?annotation75 . ?annotation75 faldo:begin ?pfsb76 ; faldo:end ?pfse77 ; rdf:type up:Active_Site_Annotation ; rdfs:comment 'Proton donor; for decarboxylase activity' . ?pfsb76 faldo:position ?thisPositionOn78 ; rdf:type faldo:ExactPosition . ?pfse77 faldo:position ?thisPositionOn79 ; rdf:type faldo:ExactPosition . ?pfs80 up:annotation ?annotation81 . ?annotation81 faldo:begin ?pfsb82 ; faldo:end ?pfse83 ; up:ligand ?ligand84 ; rdf:type up:Binding_Site_Annotation . ?pfsb82 faldo:position ?thisPositionOn85 ; rdf:type faldo:ExactPosition . ?pfse83 faldo:position ?thisPositionOn86 ; rdf:type faldo:ExactPosition . ?ligand84 rdfs:subClassOf chebi:195366 . ?pfs87 up:annotation ?annotation88 . ?annotation88 faldo:begin ?pfsb89 ; faldo:end ?pfse90 ; up:ligand ?ligand91 ; rdf:type up:Binding_Site_Annotation . ?pfsb89 faldo:position ?thisPositionOn92 ; rdf:type faldo:ExactPosition . ?pfse90 faldo:position ?thisPositionOn93 ; rdf:type faldo:ExactPosition . ?ligand91 rdfs:subClassOf chebi:57540 . ?pfs94 up:annotation ?annotation95 . ?annotation95 faldo:begin ?pfsb96 ; faldo:end ?pfse97 ; up:ligand ?ligand98 ; rdf:type up:Binding_Site_Annotation . ?pfsb96 faldo:position ?thisPositionOn99 ; rdf:type faldo:ExactPosition . ?pfse97 faldo:position ?thisPositionOn100 ; rdf:type faldo:ExactPosition . ?ligand98 rdfs:subClassOf chebi:58052 . ?pfs101 up:annotation ?annotation102 . ?annotation102 faldo:begin ?pfsb103 ; faldo:end ?pfse104 ; up:ligand ?ligand105 ; rdf:type up:Binding_Site_Annotation . ?pfsb103 faldo:position ?thisPositionOn106 ; rdf:type faldo:ExactPosition . ?pfse104 faldo:position ?thisPositionOn107 ; rdf:type faldo:ExactPosition . ?ligand105 rdfs:subClassOf chebi:58052 . ?pfs108 up:annotation ?annotation109 . ?annotation109 faldo:begin ?pfsb110 ; faldo:end ?pfse111 ; up:ligand ?ligand112 ; rdf:type up:Binding_Site_Annotation . ?pfsb110 faldo:position ?thisPositionOn113 ; rdf:type faldo:ExactPosition . ?pfse111 faldo:position ?thisPositionOn114 ; rdf:type faldo:ExactPosition . ?ligand112 rdfs:subClassOf chebi:58052 . ?pfs115 up:annotation ?annotation116 . ?annotation116 faldo:begin ?pfsb117 ; faldo:end ?pfse118 ; up:ligand ?ligand119 ; rdf:type up:Binding_Site_Annotation . ?pfsb117 faldo:position ?thisPositionOn120 ; rdf:type faldo:ExactPosition . ?pfse118 faldo:position ?thisPositionOn121 ; rdf:type faldo:ExactPosition . ?ligand119 rdfs:subClassOf chebi:58052 . ?pfs122 up:annotation ?annotation123 . ?annotation123 faldo:begin ?pfsb124 ; faldo:end ?pfse125 ; up:ligand ?ligand126 ; rdf:type up:Binding_Site_Annotation . ?pfsb124 faldo:position ?thisPositionOn127 ; rdf:type faldo:ExactPosition . ?pfse125 faldo:position ?thisPositionOn128 ; rdf:type faldo:ExactPosition . ?ligand126 rdfs:subClassOf chebi:58052 . ?pfs129 up:annotation ?annotation130 . ?annotation130 faldo:begin ?pfsb131 ; faldo:end ?pfse132 ; rdf:type up:Site_Annotation ; rdfs:comment 'Transition state stabilizer' . ?pfsb131 faldo:position ?thisPositionOn133 ; rdf:type faldo:ExactPosition . ?pfse132 faldo:position ?thisPositionOn134 ; rdf:type faldo:ExactPosition . ?pfs135 up:annotation ?annotation136 . ?annotation136 faldo:begin ?pfsb137 ; faldo:end ?pfse138 ; rdf:type up:Site_Annotation ; rdfs:comment 'Raises pKa of active site His' . ?pfsb137 faldo:position ?thisPositionOn139 ; rdf:type faldo:ExactPosition . ?pfse138 faldo:position ?thisPositionOn140 ; rdf:type faldo:ExactPosition . _:400775 a rdf:Statement ; up:attribution _:400723 ; rdf:subject ?this ; rdf:predicate up:recommendedName ; rdf:object ?name0 . _:400776 a rdf:Statement ; up:attribution _:400727 ; rdf:subject ?this ; rdf:predicate up:domain ; rdf:object ?namedpart1 . _:400777 a rdf:Statement ; up:attribution _:400732 ; rdf:subject ?this ; rdf:predicate up:domain ; rdf:object ?namedpart2 . _:400778 a rdf:Statement ; up:attribution _:400733 ; rdf:subject ?gene3 ; rdf:predicate up:encodedBy ; rdf:object ?gene3 . _:400779 a rdf:Statement ; up:attribution _:400734 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation4 . _:400780 a rdf:Statement ; up:attribution _:400735 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation5 . _:400781 a rdf:Statement ; up:attribution _:400736 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation7 . _:400782 a rdf:Statement ; up:attribution _:400737 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation9 . _:400783 a rdf:Statement ; up:attribution _:400738 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation10 . _:400784 a rdf:Statement ; up:attribution _:400739 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation11 . _:400785 a rdf:Statement ; up:attribution _:400740 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation12 . _:400786 a rdf:Statement ; up:attribution _:400741 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation13 . _:400787 a rdf:Statement ; up:attribution _:400742 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation14 . _:400788 a rdf:Statement ; up:attribution _:400743 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:46 . _:400789 a rdf:Statement ; up:attribution _:400744 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:441 . _:400790 a rdf:Statement ; up:attribution _:400745 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:444 . _:400791 a rdf:Statement ; up:attribution _:400746 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:443 . _:400792 a rdf:Statement ; up:attribution _:400747 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:448 . _:400793 a rdf:Statement ; up:attribution _:400748 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:511 . _:400794 a rdf:Statement ; up:attribution _:400749 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:520 . _:400795 a rdf:Statement ; up:attribution _:400750 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:560 . _:400796 a rdf:Statement ; up:attribution _:400751 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:808 . _:400797 a rdf:Statement ; up:attribution _:400752 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object GO:0016616 . _:400798 a rdf:Statement ; up:attribution _:400753 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object GO:0016742 . _:400799 a rdf:Statement ; up:attribution _:400754 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object GO:0046493 . _:400800 a rdf:Statement ; up:attribution _:400755 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object GO:0009103 . _:400801 a rdf:Statement ; up:source unirule:MF_01166 ; rdf:subject ?pfs15 ; rdf:predicate up:annotation ; rdf:object ?annotation16 . _:400802 a rdf:Statement ; up:attribution _:400756 ; rdf:subject ?pfs15 ; rdf:predicate up:annotation ; rdf:object ?annotation16 . _:400803 a rdf:Statement ; up:source unirule:MF_01166 ; rdf:subject ?pfs21 ; rdf:predicate up:annotation ; rdf:object ?annotation22 . _:400804 a rdf:Statement ; up:attribution _:400757 ; rdf:subject ?pfs21 ; rdf:predicate up:annotation ; rdf:object ?annotation22 . _:400805 a rdf:Statement ; up:source unirule:MF_01166 ; rdf:subject ?pfs27 ; rdf:predicate up:annotation ; rdf:object ?annotation28 . _:400806 a rdf:Statement ; up:attribution _:400758 ; rdf:subject ?pfs27 ; rdf:predicate up:annotation ; rdf:object ?annotation28 . _:400807 a rdf:Statement ; up:source unirule:MF_01166 ; rdf:subject ?pfs34 ; rdf:predicate up:annotation ; rdf:object ?annotation35 . _:400808 a rdf:Statement ; up:attribution _:400759 ; rdf:subject ?pfs34 ; rdf:predicate up:annotation ; rdf:object ?annotation35 . _:400809 a rdf:Statement ; up:source unirule:MF_01166 ; rdf:subject ?pfs41 ; rdf:predicate up:annotation ; rdf:object ?annotation42 . _:400810 a rdf:Statement ; up:attribution _:400760 ; rdf:subject ?pfs41 ; rdf:predicate up:annotation ; rdf:object ?annotation42 . _:400811 a rdf:Statement ; up:source unirule:MF_01166 ; rdf:subject ?pfs48 ; rdf:predicate up:annotation ; rdf:object ?annotation49 . _:400812 a rdf:Statement ; up:attribution _:400761 ; rdf:subject ?pfs48 ; rdf:predicate up:annotation ; rdf:object ?annotation49 . _:400813 a rdf:Statement ; up:source unirule:MF_01166 ; rdf:subject ?pfs55 ; rdf:predicate up:annotation ; rdf:object ?annotation56 . _:400814 a rdf:Statement ; up:attribution _:400762 ; rdf:subject ?pfs55 ; rdf:predicate up:annotation ; rdf:object ?annotation56 . _:400815 a rdf:Statement ; up:source unirule:MF_01166 ; rdf:subject ?pfs62 ; rdf:predicate up:annotation ; rdf:object ?annotation63 . _:400816 a rdf:Statement ; up:attribution _:400763 ; rdf:subject ?pfs62 ; rdf:predicate up:annotation ; rdf:object ?annotation63 . _:400817 a rdf:Statement ; up:source unirule:MF_01166 ; rdf:subject ?pfs68 ; rdf:predicate up:annotation ; rdf:object ?annotation69 . _:400818 a rdf:Statement ; up:attribution _:400764 ; rdf:subject ?pfs68 ; rdf:predicate up:annotation ; rdf:object ?annotation69 . _:400819 a rdf:Statement ; up:source unirule:MF_01166 ; rdf:subject ?pfs74 ; rdf:predicate up:annotation ; rdf:object ?annotation75 . _:400820 a rdf:Statement ; up:attribution _:400765 ; rdf:subject ?pfs74 ; rdf:predicate up:annotation ; rdf:object ?annotation75 . _:400821 a rdf:Statement ; up:source unirule:MF_01166 ; rdf:subject ?pfs80 ; rdf:predicate up:annotation ; rdf:object ?annotation81 . _:400822 a rdf:Statement ; up:attribution _:400766 ; rdf:subject ?pfs80 ; rdf:predicate up:annotation ; rdf:object ?annotation81 . _:400823 a rdf:Statement ; up:source unirule:MF_01166 ; rdf:subject ?pfs87 ; rdf:predicate up:annotation ; rdf:object ?annotation88 . _:400824 a rdf:Statement ; up:attribution _:400767 ; rdf:subject ?pfs87 ; rdf:predicate up:annotation ; rdf:object ?annotation88 . _:400825 a rdf:Statement ; up:source unirule:MF_01166 ; rdf:subject ?pfs94 ; rdf:predicate up:annotation ; rdf:object ?annotation95 . _:400826 a rdf:Statement ; up:attribution _:400768 ; rdf:subject ?pfs94 ; rdf:predicate up:annotation ; rdf:object ?annotation95 . _:400827 a rdf:Statement ; up:source unirule:MF_01166 ; rdf:subject ?pfs101 ; rdf:predicate up:annotation ; rdf:object ?annotation102 . _:400828 a rdf:Statement ; up:attribution _:400769 ; rdf:subject ?pfs101 ; rdf:predicate up:annotation ; rdf:object ?annotation102 . _:400829 a rdf:Statement ; up:source unirule:MF_01166 ; rdf:subject ?pfs108 ; rdf:predicate up:annotation ; rdf:object ?annotation109 . _:400830 a rdf:Statement ; up:attribution _:400770 ; rdf:subject ?pfs108 ; rdf:predicate up:annotation ; rdf:object ?annotation109 . _:400831 a rdf:Statement ; up:source unirule:MF_01166 ; rdf:subject ?pfs115 ; rdf:predicate up:annotation ; rdf:object ?annotation116 . _:400832 a rdf:Statement ; up:attribution _:400771 ; rdf:subject ?pfs115 ; rdf:predicate up:annotation ; rdf:object ?annotation116 . _:400833 a rdf:Statement ; up:source unirule:MF_01166 ; rdf:subject ?pfs122 ; rdf:predicate up:annotation ; rdf:object ?annotation123 . _:400834 a rdf:Statement ; up:attribution _:400772 ; rdf:subject ?pfs122 ; rdf:predicate up:annotation ; rdf:object ?annotation123 . _:400835 a rdf:Statement ; up:source unirule:MF_01166 ; rdf:subject ?pfs129 ; rdf:predicate up:annotation ; rdf:object ?annotation130 . _:400836 a rdf:Statement ; up:attribution _:400773 ; rdf:subject ?pfs129 ; rdf:predicate up:annotation ; rdf:object ?annotation130 . _:400837 a rdf:Statement ; up:source unirule:MF_01166 ; rdf:subject ?pfs135 ; rdf:predicate up:annotation ; rdf:object ?annotation136 . _:400838 a rdf:Statement ; up:attribution _:400774 ; rdf:subject ?pfs135 ; rdf:predicate up:annotation ; rdf:object ?annotation136 . } WHERE { #baseURI: http://purl.uniprot.org/unirule/MF_01166 #Rule MF_01166 Created by:tlima on:2005-11-11 Modified by:crivoire on:2024-03-01 ?this up:organism ?thisOrganism ; rdfs:seeAlso signature:MF_01166 . ?thisOrganism rdfs:subClassOf+ taxon:1236 . BIND(URI(CONCAT(STR(?this), '#MF_01166a0')) AS ?name0) . BIND(URI(CONCAT(STR(?this), '#MF_01166a1')) AS ?namedpart1) . BIND(URI(CONCAT(STR(?this), '#MF_01166a2')) AS ?namedpart2) . BIND(URI(CONCAT(STR(?this), '#MF_01166a4')) AS ?annotation4) . BIND(URI(CONCAT(STR(?this), '#MF_01166a5')) AS ?annotation5) . BIND(URI(CONCAT(STR(?this), '#MF_01166a7')) AS ?annotation7) . BIND(URI(CONCAT(STR(?this), '#MF_01166a9')) AS ?annotation9) . BIND(URI(CONCAT(STR(?this), '#MF_01166a10')) AS ?annotation10) . BIND(URI(CONCAT(STR(?this), '#MF_01166a11')) AS ?annotation11) . BIND(URI(CONCAT(STR(?this), '#MF_01166a12')) AS ?annotation12) . BIND(URI(CONCAT(STR(?this), '#MF_01166a13')) AS ?annotation13) . BIND(URI(CONCAT(STR(?this), '#MF_01166a14')) AS ?annotation14) . OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch145 faldo:location ?templateMotifSequenceMatchRegionP77398146 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP77398148 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP77398MF_01166141 . ?templateMotifSequenceMatchRegionP77398146 faldo:begin ?templateMotifSequenceMatchBeginP77398147 . ?templateMotifSequenceMatchBeginP77398147 faldo:position ?templateMotifSequenceMatchBeginPositionP77398142 ; faldo:reference isoform:P77398-1 . ?templateMotifSequenceProfileAlignmentOperationP77398148 edam:has_input signature:MF_01166 ; rdf:type edam:operation_0300 . ?targetMotifMatch149 faldo:location ?targetMotifMatchRegionMatch150 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01166152 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP77398MF_01166143 . ?targetMotifMatchRegionMatch150 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01166151 . ?targetMotifMatchRegionMatchBeginMF_01166151 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01166144 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_01166152 edam:has_input signature:MF_01166 ; rdf:type edam:operation_0300 . BIND(1 AS ?thisPositionOn19) . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP77398MF_01166141, 1, (STRLEN(?templateMotifCigarP77398MF_01166141) - STRLEN(REPLACE(?templateMotifCigarP77398MF_01166141, CONCAT('^(?:-*[^-]){', STR(((304 - ?templateMotifSequenceMatchBeginPositionP77398142) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1153) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP77398MF_01166143, 1, (STRLEN(?targetMotifMatchCigarP77398MF_01166143) - STRLEN(REPLACE(?targetMotifMatchCigarP77398MF_01166143, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1153), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP77398MF_01166143, 1, (STRLEN(?targetMotifMatchCigarP77398MF_01166143) - STRLEN(REPLACE(?targetMotifMatchCigarP77398MF_01166143, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1153), '}'), '')))), '[^-]', ''))) AS ?step2154) . BIND(((?step2154 + ?targetMotifMatchRegionMatchBeginPositionMF_01166144) - 1) AS ?thisPositionOn20) . BIND(?this AS ?pfs1t155) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn19))) AS ?pfsb17) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn20))) AS ?pfse18) . FILTER ((BOUND(?thisPositionOn19) && BOUND(?thisPositionOn20))) . BIND(URI(CONCAT(STR(?this), '#MF_01166a16')) AS ?annotation16) . BIND(?this AS ?pfs15) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch160 faldo:location ?templateMotifSequenceMatchRegionP77398161 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP77398163 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP77398MF_01166156 . ?templateMotifSequenceMatchRegionP77398161 faldo:begin ?templateMotifSequenceMatchBeginP77398162 . ?templateMotifSequenceMatchBeginP77398162 faldo:position ?templateMotifSequenceMatchBeginPositionP77398157 ; faldo:reference isoform:P77398-1 . ?templateMotifSequenceProfileAlignmentOperationP77398163 edam:has_input signature:MF_01166 ; rdf:type edam:operation_0300 . ?targetMotifMatch164 faldo:location ?targetMotifMatchRegionMatch165 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01166167 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP77398MF_01166158 . ?targetMotifMatchRegionMatch165 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01166166 . ?targetMotifMatchRegionMatchBeginMF_01166166 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01166159 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_01166167 edam:has_input signature:MF_01166 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP77398MF_01166156, 1, (STRLEN(?templateMotifCigarP77398MF_01166156) - STRLEN(REPLACE(?templateMotifCigarP77398MF_01166156, CONCAT('^(?:-*[^-]){', STR(((314 - ?templateMotifSequenceMatchBeginPositionP77398157) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1168) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP77398MF_01166158, 1, (STRLEN(?targetMotifMatchCigarP77398MF_01166158) - STRLEN(REPLACE(?targetMotifMatchCigarP77398MF_01166158, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1168), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP77398MF_01166158, 1, (STRLEN(?targetMotifMatchCigarP77398MF_01166158) - STRLEN(REPLACE(?targetMotifMatchCigarP77398MF_01166158, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1168), '}'), '')))), '[^-]', ''))) AS ?step2169) . BIND(((?step2169 + ?targetMotifMatchRegionMatchBeginPositionMF_01166159) - 1) AS ?thisPositionOn25) . BIND(STRLEN(?thisSequenceValue) AS ?thisPositionOn26) . BIND(?this AS ?pfs1t170) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn25))) AS ?pfsb23) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn26))) AS ?pfse24) . FILTER ((BOUND(?thisPositionOn25) && BOUND(?thisPositionOn26))) . BIND(URI(CONCAT(STR(?this), '#MF_01166a22')) AS ?annotation22) . BIND(?this AS ?pfs21) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch175 faldo:location ?templateMotifSequenceMatchRegionP77398176 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP77398178 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP77398MF_01166171 . ?templateMotifSequenceMatchRegionP77398176 faldo:begin ?templateMotifSequenceMatchBeginP77398177 . ?templateMotifSequenceMatchBeginP77398177 faldo:position ?templateMotifSequenceMatchBeginPositionP77398172 ; faldo:reference isoform:P77398-1 . ?templateMotifSequenceProfileAlignmentOperationP77398178 edam:has_input signature:MF_01166 ; rdf:type edam:operation_0300 . ?targetMotifMatch179 faldo:location ?targetMotifMatchRegionMatch180 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01166182 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP77398MF_01166173 . ?targetMotifMatchRegionMatch180 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01166181 . ?targetMotifMatchRegionMatchBeginMF_01166181 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01166174 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_01166182 edam:has_input signature:MF_01166 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP77398MF_01166171, 1, (STRLEN(?templateMotifCigarP77398MF_01166171) - STRLEN(REPLACE(?templateMotifCigarP77398MF_01166171, CONCAT('^(?:-*[^-]){', STR(((368 - ?templateMotifSequenceMatchBeginPositionP77398172) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1183) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP77398MF_01166173, 1, (STRLEN(?targetMotifMatchCigarP77398MF_01166173) - STRLEN(REPLACE(?targetMotifMatchCigarP77398MF_01166173, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1183), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP77398MF_01166173, 1, (STRLEN(?targetMotifMatchCigarP77398MF_01166173) - STRLEN(REPLACE(?targetMotifMatchCigarP77398MF_01166173, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1183), '}'), '')))), '[^-]', ''))) AS ?step2184) . BIND(((?step2184 + ?targetMotifMatchRegionMatchBeginPositionMF_01166174) - 1) AS ?thisPositionOn32) . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP77398MF_01166171, 1, (STRLEN(?templateMotifCigarP77398MF_01166171) - STRLEN(REPLACE(?templateMotifCigarP77398MF_01166171, CONCAT('^(?:-*[^-]){', STR(((369 - ?templateMotifSequenceMatchBeginPositionP77398172) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1185) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP77398MF_01166173, 1, (STRLEN(?targetMotifMatchCigarP77398MF_01166173) - STRLEN(REPLACE(?targetMotifMatchCigarP77398MF_01166173, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1185), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP77398MF_01166173, 1, (STRLEN(?targetMotifMatchCigarP77398MF_01166173) - STRLEN(REPLACE(?targetMotifMatchCigarP77398MF_01166173, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1185), '}'), '')))), '[^-]', ''))) AS ?step2186) . BIND(((?step2186 + ?targetMotifMatchRegionMatchBeginPositionMF_01166174) - 1) AS ?thisPositionOn33) . BIND(?this AS ?pfs1t187) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn32))) AS ?pfsb29) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn33))) AS ?pfse30) . FILTER (REGEX('D[IV]', SUBSTR(?thisSequenceValue, ?thisPositionOn32, (?thisPositionOn33 - ?thisPositionOn32)))) . BIND(URI(CONCAT(STR(?this), '#MF_01166a28')) AS ?annotation28) . BIND(?this AS ?pfs27) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch192 faldo:location ?templateMotifSequenceMatchRegionP77398193 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP77398195 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP77398MF_01166188 . ?templateMotifSequenceMatchRegionP77398193 faldo:begin ?templateMotifSequenceMatchBeginP77398194 . ?templateMotifSequenceMatchBeginP77398194 faldo:position ?templateMotifSequenceMatchBeginPositionP77398189 ; faldo:reference isoform:P77398-1 . ?templateMotifSequenceProfileAlignmentOperationP77398195 edam:has_input signature:MF_01166 ; rdf:type edam:operation_0300 . ?targetMotifMatch196 faldo:location ?targetMotifMatchRegionMatch197 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01166199 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP77398MF_01166190 . ?targetMotifMatchRegionMatch197 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01166198 . ?targetMotifMatchRegionMatchBeginMF_01166198 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01166191 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_01166199 edam:has_input signature:MF_01166 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP77398MF_01166188, 1, (STRLEN(?templateMotifCigarP77398MF_01166188) - STRLEN(REPLACE(?templateMotifCigarP77398MF_01166188, CONCAT('^(?:-*[^-]){', STR(((86 - ?templateMotifSequenceMatchBeginPositionP77398189) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1200) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP77398MF_01166190, 1, (STRLEN(?targetMotifMatchCigarP77398MF_01166190) - STRLEN(REPLACE(?targetMotifMatchCigarP77398MF_01166190, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1200), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP77398MF_01166190, 1, (STRLEN(?targetMotifMatchCigarP77398MF_01166190) - STRLEN(REPLACE(?targetMotifMatchCigarP77398MF_01166190, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1200), '}'), '')))), '[^-]', ''))) AS ?step2201) . BIND(((?step2201 + ?targetMotifMatchRegionMatchBeginPositionMF_01166191) - 1) AS ?thisPositionOn39) . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP77398MF_01166188, 1, (STRLEN(?templateMotifCigarP77398MF_01166188) - STRLEN(REPLACE(?templateMotifCigarP77398MF_01166188, CONCAT('^(?:-*[^-]){', STR(((88 - ?templateMotifSequenceMatchBeginPositionP77398189) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1202) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP77398MF_01166190, 1, (STRLEN(?targetMotifMatchCigarP77398MF_01166190) - STRLEN(REPLACE(?targetMotifMatchCigarP77398MF_01166190, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1202), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP77398MF_01166190, 1, (STRLEN(?targetMotifMatchCigarP77398MF_01166190) - STRLEN(REPLACE(?targetMotifMatchCigarP77398MF_01166190, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1202), '}'), '')))), '[^-]', ''))) AS ?step2203) . BIND(((?step2203 + ?targetMotifMatchRegionMatchBeginPositionMF_01166191) - 1) AS ?thisPositionOn40) . BIND(?this AS ?pfs1t204) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn39))) AS ?pfsb36) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn40))) AS ?pfse37) . FILTER (REGEX('H[ARNDCQEGHILKMFPSTWYVBZJUOX]I', SUBSTR(?thisSequenceValue, ?thisPositionOn39, (?thisPositionOn40 - ?thisPositionOn39)))) . BIND(URI(CONCAT(STR(?this), '#MF_01166a35')) AS ?annotation35) . BIND(?this AS ?pfs34) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch209 faldo:location ?templateMotifSequenceMatchRegionP77398210 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP77398212 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP77398MF_01166205 . ?templateMotifSequenceMatchRegionP77398210 faldo:begin ?templateMotifSequenceMatchBeginP77398211 . ?templateMotifSequenceMatchBeginP77398211 faldo:position ?templateMotifSequenceMatchBeginPositionP77398206 ; faldo:reference isoform:P77398-1 . ?templateMotifSequenceProfileAlignmentOperationP77398212 edam:has_input signature:MF_01166 ; rdf:type edam:operation_0300 . ?targetMotifMatch213 faldo:location ?targetMotifMatchRegionMatch214 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01166216 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP77398MF_01166207 . ?targetMotifMatchRegionMatch214 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01166215 . ?targetMotifMatchRegionMatchBeginMF_01166215 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01166208 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_01166216 edam:has_input signature:MF_01166 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP77398MF_01166205, 1, (STRLEN(?templateMotifCigarP77398MF_01166205) - STRLEN(REPLACE(?templateMotifCigarP77398MF_01166205, CONCAT('^(?:-*[^-]){', STR(((136 - ?templateMotifSequenceMatchBeginPositionP77398206) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1217) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP77398MF_01166207, 1, (STRLEN(?targetMotifMatchCigarP77398MF_01166207) - STRLEN(REPLACE(?targetMotifMatchCigarP77398MF_01166207, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1217), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP77398MF_01166207, 1, (STRLEN(?targetMotifMatchCigarP77398MF_01166207) - STRLEN(REPLACE(?targetMotifMatchCigarP77398MF_01166207, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1217), '}'), '')))), '[^-]', ''))) AS ?step2218) . BIND(((?step2218 + ?targetMotifMatchRegionMatchBeginPositionMF_01166208) - 1) AS ?thisPositionOn46) . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP77398MF_01166205, 1, (STRLEN(?templateMotifCigarP77398MF_01166205) - STRLEN(REPLACE(?templateMotifCigarP77398MF_01166205, CONCAT('^(?:-*[^-]){', STR(((140 - ?templateMotifSequenceMatchBeginPositionP77398206) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1219) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP77398MF_01166207, 1, (STRLEN(?targetMotifMatchCigarP77398MF_01166207) - STRLEN(REPLACE(?targetMotifMatchCigarP77398MF_01166207, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1219), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP77398MF_01166207, 1, (STRLEN(?targetMotifMatchCigarP77398MF_01166207) - STRLEN(REPLACE(?targetMotifMatchCigarP77398MF_01166207, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1219), '}'), '')))), '[^-]', ''))) AS ?step2220) . BIND(((?step2220 + ?targetMotifMatchRegionMatchBeginPositionMF_01166208) - 1) AS ?thisPositionOn47) . BIND(?this AS ?pfs1t221) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn46))) AS ?pfsb43) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn47))) AS ?pfse44) . FILTER (REGEX('[VIT][ARNDCQEGHILKMFPSTWYVBZJUOX]{3)D', SUBSTR(?thisSequenceValue, ?thisPositionOn46, (?thisPositionOn47 - ?thisPositionOn46)))) . BIND(URI(CONCAT(STR(?this), '#MF_01166a42')) AS ?annotation42) . BIND(?this AS ?pfs41) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch226 faldo:location ?templateMotifSequenceMatchRegionP77398227 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP77398229 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP77398MF_01166222 . ?templateMotifSequenceMatchRegionP77398227 faldo:begin ?templateMotifSequenceMatchBeginP77398228 . ?templateMotifSequenceMatchBeginP77398228 faldo:position ?templateMotifSequenceMatchBeginPositionP77398223 ; faldo:reference isoform:P77398-1 . ?templateMotifSequenceProfileAlignmentOperationP77398229 edam:has_input signature:MF_01166 ; rdf:type edam:operation_0300 . ?targetMotifMatch230 faldo:location ?targetMotifMatchRegionMatch231 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01166233 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP77398MF_01166224 . ?targetMotifMatchRegionMatch231 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01166232 . ?targetMotifMatchRegionMatchBeginMF_01166232 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01166225 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_01166233 edam:has_input signature:MF_01166 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP77398MF_01166222, 1, (STRLEN(?templateMotifCigarP77398MF_01166222) - STRLEN(REPLACE(?templateMotifCigarP77398MF_01166222, CONCAT('^(?:-*[^-]){', STR(((432 - ?templateMotifSequenceMatchBeginPositionP77398223) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1234) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP77398MF_01166224, 1, (STRLEN(?targetMotifMatchCigarP77398MF_01166224) - STRLEN(REPLACE(?targetMotifMatchCigarP77398MF_01166224, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1234), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP77398MF_01166224, 1, (STRLEN(?targetMotifMatchCigarP77398MF_01166224) - STRLEN(REPLACE(?targetMotifMatchCigarP77398MF_01166224, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1234), '}'), '')))), '[^-]', ''))) AS ?step2235) . BIND(((?step2235 + ?targetMotifMatchRegionMatchBeginPositionMF_01166225) - 1) AS ?thisPositionOn53) . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP77398MF_01166222, 1, (STRLEN(?templateMotifCigarP77398MF_01166222) - STRLEN(REPLACE(?templateMotifCigarP77398MF_01166222, CONCAT('^(?:-*[^-]){', STR(((433 - ?templateMotifSequenceMatchBeginPositionP77398223) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1236) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP77398MF_01166224, 1, (STRLEN(?targetMotifMatchCigarP77398MF_01166224) - STRLEN(REPLACE(?targetMotifMatchCigarP77398MF_01166224, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1236), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP77398MF_01166224, 1, (STRLEN(?targetMotifMatchCigarP77398MF_01166224) - STRLEN(REPLACE(?targetMotifMatchCigarP77398MF_01166224, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1236), '}'), '')))), '[^-]', ''))) AS ?step2237) . BIND(((?step2237 + ?targetMotifMatchRegionMatchBeginPositionMF_01166225) - 1) AS ?thisPositionOn54) . BIND(?this AS ?pfs1t238) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn53))) AS ?pfsb50) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn54))) AS ?pfse51) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn53, (?thisPositionOn54 - ?thisPositionOn53)) = 'TS')) . BIND(URI(CONCAT(STR(?this), '#MF_01166a49')) AS ?annotation49) . BIND(?this AS ?pfs48) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch243 faldo:location ?templateMotifSequenceMatchRegionP77398244 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP77398246 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP77398MF_01166239 . ?templateMotifSequenceMatchRegionP77398244 faldo:begin ?templateMotifSequenceMatchBeginP77398245 . ?templateMotifSequenceMatchBeginP77398245 faldo:position ?templateMotifSequenceMatchBeginPositionP77398240 ; faldo:reference isoform:P77398-1 . ?templateMotifSequenceProfileAlignmentOperationP77398246 edam:has_input signature:MF_01166 ; rdf:type edam:operation_0300 . ?targetMotifMatch247 faldo:location ?targetMotifMatchRegionMatch248 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01166250 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP77398MF_01166241 . ?targetMotifMatchRegionMatch248 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01166249 . ?targetMotifMatchRegionMatchBeginMF_01166249 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01166242 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_01166250 edam:has_input signature:MF_01166 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP77398MF_01166239, 1, (STRLEN(?templateMotifCigarP77398MF_01166239) - STRLEN(REPLACE(?templateMotifCigarP77398MF_01166239, CONCAT('^(?:-*[^-]){', STR(((526 - ?templateMotifSequenceMatchBeginPositionP77398240) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1251) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP77398MF_01166241, 1, (STRLEN(?targetMotifMatchCigarP77398MF_01166241) - STRLEN(REPLACE(?targetMotifMatchCigarP77398MF_01166241, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1251), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP77398MF_01166241, 1, (STRLEN(?targetMotifMatchCigarP77398MF_01166241) - STRLEN(REPLACE(?targetMotifMatchCigarP77398MF_01166241, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1251), '}'), '')))), '[^-]', ''))) AS ?step2252) . BIND(((?step2252 + ?targetMotifMatchRegionMatchBeginPositionMF_01166242) - 1) AS ?thisPositionOn60) . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP77398MF_01166239, 1, (STRLEN(?templateMotifCigarP77398MF_01166239) - STRLEN(REPLACE(?templateMotifCigarP77398MF_01166239, CONCAT('^(?:-*[^-]){', STR(((535 - ?templateMotifSequenceMatchBeginPositionP77398240) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1253) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP77398MF_01166241, 1, (STRLEN(?targetMotifMatchCigarP77398MF_01166241) - STRLEN(REPLACE(?targetMotifMatchCigarP77398MF_01166241, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1253), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP77398MF_01166241, 1, (STRLEN(?targetMotifMatchCigarP77398MF_01166241) - STRLEN(REPLACE(?targetMotifMatchCigarP77398MF_01166241, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1253), '}'), '')))), '[^-]', ''))) AS ?step2254) . BIND(((?step2254 + ?targetMotifMatchRegionMatchBeginPositionMF_01166242) - 1) AS ?thisPositionOn61) . BIND(?this AS ?pfs1t255) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn60))) AS ?pfsb57) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn61))) AS ?pfse58) . FILTER (REGEX('[KRQ][ARNDCQEGHILKMFPSTWYVBZJUOX]{6)Q[ARNDCQEGHILKMFPSTWYVBZJUOX]R', SUBSTR(?thisSequenceValue, ?thisPositionOn60, (?thisPositionOn61 - ?thisPositionOn60)))) . BIND(URI(CONCAT(STR(?this), '#MF_01166a56')) AS ?annotation56) . BIND(?this AS ?pfs55) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch260 faldo:location ?templateMotifSequenceMatchRegionP77398261 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP77398263 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP77398MF_01166256 . ?templateMotifSequenceMatchRegionP77398261 faldo:begin ?templateMotifSequenceMatchBeginP77398262 . ?templateMotifSequenceMatchBeginP77398262 faldo:position ?templateMotifSequenceMatchBeginPositionP77398257 ; faldo:reference isoform:P77398-1 . ?templateMotifSequenceProfileAlignmentOperationP77398263 edam:has_input signature:MF_01166 ; rdf:type edam:operation_0300 . ?targetMotifMatch264 faldo:location ?targetMotifMatchRegionMatch265 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01166267 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP77398MF_01166258 . ?targetMotifMatchRegionMatch265 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01166266 . ?targetMotifMatchRegionMatchBeginMF_01166266 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01166259 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_01166267 edam:has_input signature:MF_01166 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP77398MF_01166256, 1, (STRLEN(?templateMotifCigarP77398MF_01166256) - STRLEN(REPLACE(?templateMotifCigarP77398MF_01166256, CONCAT('^(?:-*[^-]){', STR(((104 - ?templateMotifSequenceMatchBeginPositionP77398257) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1268) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP77398MF_01166258, 1, (STRLEN(?targetMotifMatchCigarP77398MF_01166258) - STRLEN(REPLACE(?targetMotifMatchCigarP77398MF_01166258, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1268), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP77398MF_01166258, 1, (STRLEN(?targetMotifMatchCigarP77398MF_01166258) - STRLEN(REPLACE(?targetMotifMatchCigarP77398MF_01166258, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1268), '}'), '')))), '[^-]', ''))) AS ?step2269) . BIND(((?step2269 + ?targetMotifMatchRegionMatchBeginPositionMF_01166259) - 1) AS ?thisPositionOn66) . BIND(?thisPositionOn66 AS ?thisPositionOn67) . BIND(?this AS ?pfs1t270) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn66))) AS ?pfsb64) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn67))) AS ?pfse65) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn66, 1) = 'H')) . BIND(URI(CONCAT(STR(?this), '#MF_01166a63')) AS ?annotation63) . BIND(?this AS ?pfs62) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch275 faldo:location ?templateMotifSequenceMatchRegionP77398276 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP77398278 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP77398MF_01166271 . ?templateMotifSequenceMatchRegionP77398276 faldo:begin ?templateMotifSequenceMatchBeginP77398277 . ?templateMotifSequenceMatchBeginP77398277 faldo:position ?templateMotifSequenceMatchBeginPositionP77398272 ; faldo:reference isoform:P77398-1 . ?templateMotifSequenceProfileAlignmentOperationP77398278 edam:has_input signature:MF_01166 ; rdf:type edam:operation_0300 . ?targetMotifMatch279 faldo:location ?targetMotifMatchRegionMatch280 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01166282 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP77398MF_01166273 . ?targetMotifMatchRegionMatch280 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01166281 . ?targetMotifMatchRegionMatchBeginMF_01166281 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01166274 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_01166282 edam:has_input signature:MF_01166 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP77398MF_01166271, 1, (STRLEN(?templateMotifCigarP77398MF_01166271) - STRLEN(REPLACE(?templateMotifCigarP77398MF_01166271, CONCAT('^(?:-*[^-]){', STR(((434 - ?templateMotifSequenceMatchBeginPositionP77398272) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1283) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP77398MF_01166273, 1, (STRLEN(?targetMotifMatchCigarP77398MF_01166273) - STRLEN(REPLACE(?targetMotifMatchCigarP77398MF_01166273, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1283), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP77398MF_01166273, 1, (STRLEN(?targetMotifMatchCigarP77398MF_01166273) - STRLEN(REPLACE(?targetMotifMatchCigarP77398MF_01166273, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1283), '}'), '')))), '[^-]', ''))) AS ?step2284) . BIND(((?step2284 + ?targetMotifMatchRegionMatchBeginPositionMF_01166274) - 1) AS ?thisPositionOn72) . BIND(?thisPositionOn72 AS ?thisPositionOn73) . BIND(?this AS ?pfs1t285) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn72))) AS ?pfsb70) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn73))) AS ?pfse71) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn72, 1) = 'E')) . BIND(URI(CONCAT(STR(?this), '#MF_01166a69')) AS ?annotation69) . BIND(?this AS ?pfs68) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch290 faldo:location ?templateMotifSequenceMatchRegionP77398291 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP77398293 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP77398MF_01166286 . ?templateMotifSequenceMatchRegionP77398291 faldo:begin ?templateMotifSequenceMatchBeginP77398292 . ?templateMotifSequenceMatchBeginP77398292 faldo:position ?templateMotifSequenceMatchBeginPositionP77398287 ; faldo:reference isoform:P77398-1 . ?templateMotifSequenceProfileAlignmentOperationP77398293 edam:has_input signature:MF_01166 ; rdf:type edam:operation_0300 . ?targetMotifMatch294 faldo:location ?targetMotifMatchRegionMatch295 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01166297 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP77398MF_01166288 . ?targetMotifMatchRegionMatch295 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01166296 . ?targetMotifMatchRegionMatchBeginMF_01166296 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01166289 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_01166297 edam:has_input signature:MF_01166 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP77398MF_01166286, 1, (STRLEN(?templateMotifCigarP77398MF_01166286) - STRLEN(REPLACE(?templateMotifCigarP77398MF_01166286, CONCAT('^(?:-*[^-]){', STR(((619 - ?templateMotifSequenceMatchBeginPositionP77398287) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1298) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP77398MF_01166288, 1, (STRLEN(?targetMotifMatchCigarP77398MF_01166288) - STRLEN(REPLACE(?targetMotifMatchCigarP77398MF_01166288, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1298), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP77398MF_01166288, 1, (STRLEN(?targetMotifMatchCigarP77398MF_01166288) - STRLEN(REPLACE(?targetMotifMatchCigarP77398MF_01166288, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1298), '}'), '')))), '[^-]', ''))) AS ?step2299) . BIND(((?step2299 + ?targetMotifMatchRegionMatchBeginPositionMF_01166289) - 1) AS ?thisPositionOn78) . BIND(?thisPositionOn78 AS ?thisPositionOn79) . BIND(?this AS ?pfs1t300) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn78))) AS ?pfsb76) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn79))) AS ?pfse77) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn78, 1) = 'R')) . BIND(URI(CONCAT(STR(?this), '#MF_01166a75')) AS ?annotation75) . BIND(?this AS ?pfs74) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch305 faldo:location ?templateMotifSequenceMatchRegionP77398306 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP77398308 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP77398MF_01166301 . ?templateMotifSequenceMatchRegionP77398306 faldo:begin ?templateMotifSequenceMatchBeginP77398307 . ?templateMotifSequenceMatchBeginP77398307 faldo:position ?templateMotifSequenceMatchBeginPositionP77398302 ; faldo:reference isoform:P77398-1 . ?templateMotifSequenceProfileAlignmentOperationP77398308 edam:has_input signature:MF_01166 ; rdf:type edam:operation_0300 . ?targetMotifMatch309 faldo:location ?targetMotifMatchRegionMatch310 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01166312 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP77398MF_01166303 . ?targetMotifMatchRegionMatch310 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01166311 . ?targetMotifMatchRegionMatchBeginMF_01166311 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01166304 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_01166312 edam:has_input signature:MF_01166 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP77398MF_01166301, 1, (STRLEN(?templateMotifCigarP77398MF_01166301) - STRLEN(REPLACE(?templateMotifCigarP77398MF_01166301, CONCAT('^(?:-*[^-]){', STR(((114 - ?templateMotifSequenceMatchBeginPositionP77398302) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1313) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP77398MF_01166303, 1, (STRLEN(?targetMotifMatchCigarP77398MF_01166303) - STRLEN(REPLACE(?targetMotifMatchCigarP77398MF_01166303, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1313), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP77398MF_01166303, 1, (STRLEN(?targetMotifMatchCigarP77398MF_01166303) - STRLEN(REPLACE(?targetMotifMatchCigarP77398MF_01166303, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1313), '}'), '')))), '[^-]', ''))) AS ?step2314) . BIND(((?step2314 + ?targetMotifMatchRegionMatchBeginPositionMF_01166304) - 1) AS ?thisPositionOn85) . BIND(?thisPositionOn85 AS ?thisPositionOn86) . BIND(?this AS ?pfs1t315) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn85))) AS ?pfsb82) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn86))) AS ?pfse83) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn85, 1) = 'R')) . BIND(URI(CONCAT(STR(?this), '#MF_01166a81')) AS ?annotation81) . BIND(?this AS ?pfs80) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch320 faldo:location ?templateMotifSequenceMatchRegionP77398321 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP77398323 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP77398MF_01166316 . ?templateMotifSequenceMatchRegionP77398321 faldo:begin ?templateMotifSequenceMatchBeginP77398322 . ?templateMotifSequenceMatchBeginP77398322 faldo:position ?templateMotifSequenceMatchBeginPositionP77398317 ; faldo:reference isoform:P77398-1 . ?templateMotifSequenceProfileAlignmentOperationP77398323 edam:has_input signature:MF_01166 ; rdf:type edam:operation_0300 . ?targetMotifMatch324 faldo:location ?targetMotifMatchRegionMatch325 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01166327 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP77398MF_01166318 . ?targetMotifMatchRegionMatch325 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01166326 . ?targetMotifMatchRegionMatchBeginMF_01166326 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01166319 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_01166327 edam:has_input signature:MF_01166 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP77398MF_01166316, 1, (STRLEN(?templateMotifCigarP77398MF_01166316) - STRLEN(REPLACE(?templateMotifCigarP77398MF_01166316, CONCAT('^(?:-*[^-]){', STR(((347 - ?templateMotifSequenceMatchBeginPositionP77398317) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1328) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP77398MF_01166318, 1, (STRLEN(?targetMotifMatchCigarP77398MF_01166318) - STRLEN(REPLACE(?targetMotifMatchCigarP77398MF_01166318, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1328), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP77398MF_01166318, 1, (STRLEN(?targetMotifMatchCigarP77398MF_01166318) - STRLEN(REPLACE(?targetMotifMatchCigarP77398MF_01166318, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1328), '}'), '')))), '[^-]', ''))) AS ?step2329) . BIND(((?step2329 + ?targetMotifMatchRegionMatchBeginPositionMF_01166319) - 1) AS ?thisPositionOn92) . BIND(?thisPositionOn92 AS ?thisPositionOn93) . BIND(?this AS ?pfs1t330) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn92))) AS ?pfsb89) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn93))) AS ?pfse90) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn92, 1) = 'D')) . BIND(URI(CONCAT(STR(?this), '#MF_01166a88')) AS ?annotation88) . BIND(?this AS ?pfs87) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch335 faldo:location ?templateMotifSequenceMatchRegionP77398336 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP77398338 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP77398MF_01166331 . ?templateMotifSequenceMatchRegionP77398336 faldo:begin ?templateMotifSequenceMatchBeginP77398337 . ?templateMotifSequenceMatchBeginP77398337 faldo:position ?templateMotifSequenceMatchBeginPositionP77398332 ; faldo:reference isoform:P77398-1 . ?templateMotifSequenceProfileAlignmentOperationP77398338 edam:has_input signature:MF_01166 ; rdf:type edam:operation_0300 . ?targetMotifMatch339 faldo:location ?targetMotifMatchRegionMatch340 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01166342 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP77398MF_01166333 . ?targetMotifMatchRegionMatch340 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01166341 . ?targetMotifMatchRegionMatchBeginMF_01166341 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01166334 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_01166342 edam:has_input signature:MF_01166 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP77398MF_01166331, 1, (STRLEN(?templateMotifCigarP77398MF_01166331) - STRLEN(REPLACE(?templateMotifCigarP77398MF_01166331, CONCAT('^(?:-*[^-]){', STR(((393 - ?templateMotifSequenceMatchBeginPositionP77398332) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1343) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP77398MF_01166333, 1, (STRLEN(?targetMotifMatchCigarP77398MF_01166333) - STRLEN(REPLACE(?targetMotifMatchCigarP77398MF_01166333, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1343), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP77398MF_01166333, 1, (STRLEN(?targetMotifMatchCigarP77398MF_01166333) - STRLEN(REPLACE(?targetMotifMatchCigarP77398MF_01166333, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1343), '}'), '')))), '[^-]', ''))) AS ?step2344) . BIND(((?step2344 + ?targetMotifMatchRegionMatchBeginPositionMF_01166334) - 1) AS ?thisPositionOn99) . BIND(?thisPositionOn99 AS ?thisPositionOn100) . BIND(?this AS ?pfs1t345) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn99))) AS ?pfsb96) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn100))) AS ?pfse97) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn99, 1) = 'A')) . BIND(URI(CONCAT(STR(?this), '#MF_01166a95')) AS ?annotation95) . BIND(?this AS ?pfs94) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch350 faldo:location ?templateMotifSequenceMatchRegionP77398351 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP77398353 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP77398MF_01166346 . ?templateMotifSequenceMatchRegionP77398351 faldo:begin ?templateMotifSequenceMatchBeginP77398352 . ?templateMotifSequenceMatchBeginP77398352 faldo:position ?templateMotifSequenceMatchBeginPositionP77398347 ; faldo:reference isoform:P77398-1 . ?templateMotifSequenceProfileAlignmentOperationP77398353 edam:has_input signature:MF_01166 ; rdf:type edam:operation_0300 . ?targetMotifMatch354 faldo:location ?targetMotifMatchRegionMatch355 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01166357 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP77398MF_01166348 . ?targetMotifMatchRegionMatch355 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01166356 . ?targetMotifMatchRegionMatchBeginMF_01166356 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01166349 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_01166357 edam:has_input signature:MF_01166 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP77398MF_01166346, 1, (STRLEN(?templateMotifCigarP77398MF_01166346) - STRLEN(REPLACE(?templateMotifCigarP77398MF_01166346, CONCAT('^(?:-*[^-]){', STR(((398 - ?templateMotifSequenceMatchBeginPositionP77398347) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1358) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP77398MF_01166348, 1, (STRLEN(?targetMotifMatchCigarP77398MF_01166348) - STRLEN(REPLACE(?targetMotifMatchCigarP77398MF_01166348, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1358), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP77398MF_01166348, 1, (STRLEN(?targetMotifMatchCigarP77398MF_01166348) - STRLEN(REPLACE(?targetMotifMatchCigarP77398MF_01166348, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1358), '}'), '')))), '[^-]', ''))) AS ?step2359) . BIND(((?step2359 + ?targetMotifMatchRegionMatchBeginPositionMF_01166349) - 1) AS ?thisPositionOn106) . BIND(?thisPositionOn106 AS ?thisPositionOn107) . BIND(?this AS ?pfs1t360) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn106))) AS ?pfsb103) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn107))) AS ?pfse104) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn106, 1) = 'Y')) . BIND(URI(CONCAT(STR(?this), '#MF_01166a102')) AS ?annotation102) . BIND(?this AS ?pfs101) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch365 faldo:location ?templateMotifSequenceMatchRegionP77398366 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP77398368 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP77398MF_01166361 . ?templateMotifSequenceMatchRegionP77398366 faldo:begin ?templateMotifSequenceMatchBeginP77398367 . ?templateMotifSequenceMatchBeginP77398367 faldo:position ?templateMotifSequenceMatchBeginPositionP77398362 ; faldo:reference isoform:P77398-1 . ?templateMotifSequenceProfileAlignmentOperationP77398368 edam:has_input signature:MF_01166 ; rdf:type edam:operation_0300 . ?targetMotifMatch369 faldo:location ?targetMotifMatchRegionMatch370 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01166372 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP77398MF_01166363 . ?targetMotifMatchRegionMatch370 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01166371 . ?targetMotifMatchRegionMatchBeginMF_01166371 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01166364 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_01166372 edam:has_input signature:MF_01166 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP77398MF_01166361, 1, (STRLEN(?templateMotifCigarP77398MF_01166361) - STRLEN(REPLACE(?templateMotifCigarP77398MF_01166361, CONCAT('^(?:-*[^-]){', STR(((460 - ?templateMotifSequenceMatchBeginPositionP77398362) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1373) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP77398MF_01166363, 1, (STRLEN(?targetMotifMatchCigarP77398MF_01166363) - STRLEN(REPLACE(?targetMotifMatchCigarP77398MF_01166363, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1373), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP77398MF_01166363, 1, (STRLEN(?targetMotifMatchCigarP77398MF_01166363) - STRLEN(REPLACE(?targetMotifMatchCigarP77398MF_01166363, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1373), '}'), '')))), '[^-]', ''))) AS ?step2374) . BIND(((?step2374 + ?targetMotifMatchRegionMatchBeginPositionMF_01166364) - 1) AS ?thisPositionOn113) . BIND(?thisPositionOn113 AS ?thisPositionOn114) . BIND(?this AS ?pfs1t375) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn113))) AS ?pfsb110) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn114))) AS ?pfse111) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn113, 1) = 'R')) . BIND(URI(CONCAT(STR(?this), '#MF_01166a109')) AS ?annotation109) . BIND(?this AS ?pfs108) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch380 faldo:location ?templateMotifSequenceMatchRegionP77398381 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP77398383 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP77398MF_01166376 . ?templateMotifSequenceMatchRegionP77398381 faldo:begin ?templateMotifSequenceMatchBeginP77398382 . ?templateMotifSequenceMatchBeginP77398382 faldo:position ?templateMotifSequenceMatchBeginPositionP77398377 ; faldo:reference isoform:P77398-1 . ?templateMotifSequenceProfileAlignmentOperationP77398383 edam:has_input signature:MF_01166 ; rdf:type edam:operation_0300 . ?targetMotifMatch384 faldo:location ?targetMotifMatchRegionMatch385 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01166387 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP77398MF_01166378 . ?targetMotifMatchRegionMatch385 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01166386 . ?targetMotifMatchRegionMatchBeginMF_01166386 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01166379 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_01166387 edam:has_input signature:MF_01166 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP77398MF_01166376, 1, (STRLEN(?templateMotifCigarP77398MF_01166376) - STRLEN(REPLACE(?templateMotifCigarP77398MF_01166376, CONCAT('^(?:-*[^-]){', STR(((492 - ?templateMotifSequenceMatchBeginPositionP77398377) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1388) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP77398MF_01166378, 1, (STRLEN(?targetMotifMatchCigarP77398MF_01166378) - STRLEN(REPLACE(?targetMotifMatchCigarP77398MF_01166378, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1388), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP77398MF_01166378, 1, (STRLEN(?targetMotifMatchCigarP77398MF_01166378) - STRLEN(REPLACE(?targetMotifMatchCigarP77398MF_01166378, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1388), '}'), '')))), '[^-]', ''))) AS ?step2389) . BIND(((?step2389 + ?targetMotifMatchRegionMatchBeginPositionMF_01166379) - 1) AS ?thisPositionOn120) . BIND(?thisPositionOn120 AS ?thisPositionOn121) . BIND(?this AS ?pfs1t390) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn120))) AS ?pfsb117) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn121))) AS ?pfse118) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn120, 1) = 'N')) . BIND(URI(CONCAT(STR(?this), '#MF_01166a116')) AS ?annotation116) . BIND(?this AS ?pfs115) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch395 faldo:location ?templateMotifSequenceMatchRegionP77398396 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP77398398 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP77398MF_01166391 . ?templateMotifSequenceMatchRegionP77398396 faldo:begin ?templateMotifSequenceMatchBeginP77398397 . ?templateMotifSequenceMatchBeginP77398397 faldo:position ?templateMotifSequenceMatchBeginPositionP77398392 ; faldo:reference isoform:P77398-1 . ?templateMotifSequenceProfileAlignmentOperationP77398398 edam:has_input signature:MF_01166 ; rdf:type edam:operation_0300 . ?targetMotifMatch399 faldo:location ?targetMotifMatchRegionMatch400 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01166402 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP77398MF_01166393 . ?targetMotifMatchRegionMatch400 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01166401 . ?targetMotifMatchRegionMatchBeginMF_01166401 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01166394 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_01166402 edam:has_input signature:MF_01166 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP77398MF_01166391, 1, (STRLEN(?templateMotifCigarP77398MF_01166391) - STRLEN(REPLACE(?templateMotifCigarP77398MF_01166391, CONCAT('^(?:-*[^-]){', STR(((613 - ?templateMotifSequenceMatchBeginPositionP77398392) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1403) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP77398MF_01166393, 1, (STRLEN(?targetMotifMatchCigarP77398MF_01166393) - STRLEN(REPLACE(?targetMotifMatchCigarP77398MF_01166393, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1403), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP77398MF_01166393, 1, (STRLEN(?targetMotifMatchCigarP77398MF_01166393) - STRLEN(REPLACE(?targetMotifMatchCigarP77398MF_01166393, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1403), '}'), '')))), '[^-]', ''))) AS ?step2404) . BIND(((?step2404 + ?targetMotifMatchRegionMatchBeginPositionMF_01166394) - 1) AS ?thisPositionOn127) . BIND(?thisPositionOn127 AS ?thisPositionOn128) . BIND(?this AS ?pfs1t405) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn127))) AS ?pfsb124) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn128))) AS ?pfse125) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn127, 1) = 'Y')) . BIND(URI(CONCAT(STR(?this), '#MF_01166a123')) AS ?annotation123) . BIND(?this AS ?pfs122) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch410 faldo:location ?templateMotifSequenceMatchRegionP77398411 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP77398413 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP77398MF_01166406 . ?templateMotifSequenceMatchRegionP77398411 faldo:begin ?templateMotifSequenceMatchBeginP77398412 . ?templateMotifSequenceMatchBeginP77398412 faldo:position ?templateMotifSequenceMatchBeginPositionP77398407 ; faldo:reference isoform:P77398-1 . ?templateMotifSequenceProfileAlignmentOperationP77398413 edam:has_input signature:MF_01166 ; rdf:type edam:operation_0300 . ?targetMotifMatch414 faldo:location ?targetMotifMatchRegionMatch415 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01166417 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP77398MF_01166408 . ?targetMotifMatchRegionMatch415 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01166416 . ?targetMotifMatchRegionMatchBeginMF_01166416 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01166409 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_01166417 edam:has_input signature:MF_01166 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP77398MF_01166406, 1, (STRLEN(?templateMotifCigarP77398MF_01166406) - STRLEN(REPLACE(?templateMotifCigarP77398MF_01166406, CONCAT('^(?:-*[^-]){', STR(((102 - ?templateMotifSequenceMatchBeginPositionP77398407) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1418) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP77398MF_01166408, 1, (STRLEN(?targetMotifMatchCigarP77398MF_01166408) - STRLEN(REPLACE(?targetMotifMatchCigarP77398MF_01166408, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1418), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP77398MF_01166408, 1, (STRLEN(?targetMotifMatchCigarP77398MF_01166408) - STRLEN(REPLACE(?targetMotifMatchCigarP77398MF_01166408, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1418), '}'), '')))), '[^-]', ''))) AS ?step2419) . BIND(((?step2419 + ?targetMotifMatchRegionMatchBeginPositionMF_01166409) - 1) AS ?thisPositionOn133) . BIND(?thisPositionOn133 AS ?thisPositionOn134) . BIND(?this AS ?pfs1t420) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn133))) AS ?pfsb131) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn134))) AS ?pfse132) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn133, 1) = 'N')) . BIND(URI(CONCAT(STR(?this), '#MF_01166a130')) AS ?annotation130) . BIND(?this AS ?pfs129) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch425 faldo:location ?templateMotifSequenceMatchRegionP77398426 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP77398428 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP77398MF_01166421 . ?templateMotifSequenceMatchRegionP77398426 faldo:begin ?templateMotifSequenceMatchBeginP77398427 . ?templateMotifSequenceMatchBeginP77398427 faldo:position ?templateMotifSequenceMatchBeginPositionP77398422 ; faldo:reference isoform:P77398-1 . ?templateMotifSequenceProfileAlignmentOperationP77398428 edam:has_input signature:MF_01166 ; rdf:type edam:operation_0300 . ?targetMotifMatch429 faldo:location ?targetMotifMatchRegionMatch430 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01166432 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP77398MF_01166423 . ?targetMotifMatchRegionMatch430 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01166431 . ?targetMotifMatchRegionMatchBeginMF_01166431 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01166424 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_01166432 edam:has_input signature:MF_01166 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP77398MF_01166421, 1, (STRLEN(?templateMotifCigarP77398MF_01166421) - STRLEN(REPLACE(?templateMotifCigarP77398MF_01166421, CONCAT('^(?:-*[^-]){', STR(((140 - ?templateMotifSequenceMatchBeginPositionP77398422) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1433) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP77398MF_01166423, 1, (STRLEN(?targetMotifMatchCigarP77398MF_01166423) - STRLEN(REPLACE(?targetMotifMatchCigarP77398MF_01166423, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1433), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP77398MF_01166423, 1, (STRLEN(?targetMotifMatchCigarP77398MF_01166423) - STRLEN(REPLACE(?targetMotifMatchCigarP77398MF_01166423, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1433), '}'), '')))), '[^-]', ''))) AS ?step2434) . BIND(((?step2434 + ?targetMotifMatchRegionMatchBeginPositionMF_01166424) - 1) AS ?thisPositionOn139) . BIND(?thisPositionOn139 AS ?thisPositionOn140) . BIND(?this AS ?pfs1t435) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn139))) AS ?pfsb137) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn140))) AS ?pfse138) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn139, 1) = 'D')) . BIND(URI(CONCAT(STR(?this), '#MF_01166a136')) AS ?annotation136) . BIND(?this AS ?pfs135) . } }