CONSTRUCT { _:408790 up:source unirule:MF_01168 . _:408791 up:source unirule:MF_01168 . _:408792 up:source unirule:MF_01168 . _:408793 up:source unirule:MF_01168 . _:408794 up:source unirule:MF_01168 . _:408795 up:source unirule:MF_01168 . _:408796 up:source unirule:MF_01168 . _:408797 up:source unirule:MF_01168 . _:408798 up:source unirule:MF_01168 . _:408799 up:source unirule:MF_01168 . _:408800 up:source unirule:MF_01168 . _:408801 up:source unirule:MF_01168 . _:408802 up:source unirule:MF_01168 . _:408803 up:source unirule:MF_01168 . _:408804 up:source unirule:MF_01168 . _:408805 up:source unirule:MF_01168 . _:408806 up:source unirule:MF_01168 . _:408807 up:source unirule:MF_01168 . _:408808 up:source unirule:MF_01168 . _:408809 up:source unirule:MF_01168 . _:408810 up:source unirule:MF_01168 . _:408811 up:source unirule:MF_01168 . _:408812 up:source unirule:MF_01168 . _:408813 up:source unirule:MF_01168 . _:408814 up:source unirule:MF_01168 . _:408815 up:source unirule:MF_01168 . _:408816 up:source unirule:MF_01168 . ?this up:alternativeName ?name1 , ?name2 , ?name3 ; up:annotation ?annotation4 , ?annotation5 , ?annotation7 , ?annotation8 ; up:classifiedWith GO:0000702 , GO:0003906 , GO:0006281 , GO:0006284 , keyword:227 , keyword:228 , keyword:234 , keyword:378 , keyword:456 ; up:recommendedName ?name0 . ?name0 up:fullName 'N-glycosylase/DNA lyase' ; rdf:type up:Structured_Name . ?name1 up:ecName '3.2.2.-' ; up:fullName '8-oxoguanine DNA glycosylase' ; rdf:type up:Structured_Name . ?name2 up:fullName 'AGOG' ; rdf:type up:Structured_Name . ?name3 up:ecName '4.2.99.18' ; up:fullName 'DNA-(apurinic or apyrimidinic site) lyase' ; up:shortName 'AP lyase' ; rdf:type up:Structured_Name . ?annotation4 a up:Function_Annotation ; rdfs:comment 'DNA repair enzyme that is part of the base excision repair (BER) pathway; protects from oxidative damage by removing the major product of DNA oxidation, 8-oxoguanine (GO), from single- and double-stranded DNA substrates.' . ?annotation5 up:activity ?activity6 ; rdf:type up:Catalytic_Activity_Annotation . ?activity6 up:catalyticActivity <http://rdf.rhea-db.org/66592>; up:enzymeClass <http://purl.uniprot.org/enzyme/4.2.99.18>. ?annotation7 a up:Domain_Annotation ; rdfs:comment 'Contains two alpha-helical subdomains, with the 8-oxoguanine binding site located in a cleft at their interface. Contains a helix-hairpin-helix (HhH) structural motif and a Gly/Pro-rich sequence followed by a conserved Asp (HhH-GPD motif).' . ?annotation8 a up:Similarity_Annotation ; rdfs:comment 'Belongs to the archaeal N-glycosylase/DNA lyase (AGOG) family.' . ?pfs9 up:annotation ?annotation10 . ?annotation10 faldo:begin ?pfsb11 ; faldo:end ?pfse12 ; rdf:type up:Region_Annotation ; rdfs:comment 'Helix-hairpin-helix' . ?pfsb11 faldo:position ?thisPositionOn13 ; rdf:type faldo:ExactPosition . ?pfse12 faldo:position ?thisPositionOn14 ; rdf:type faldo:ExactPosition . ?pfs15 up:annotation ?annotation16 . ?annotation16 faldo:begin ?pfsb17 ; faldo:end ?pfse18 ; rdf:type up:Active_Site_Annotation ; rdfs:comment 'Schiff-base intermediate with DNA' . ?pfsb17 faldo:position ?thisPositionOn19 ; rdf:type faldo:ExactPosition . ?pfse18 faldo:position ?thisPositionOn20 ; rdf:type faldo:ExactPosition . ?pfs21 up:annotation ?annotation22 . ?annotation22 faldo:begin ?pfsb23 ; faldo:end ?pfse24 ; rdf:type up:Active_Site_Annotation . ?pfsb23 faldo:position ?thisPositionOn25 ; rdf:type faldo:ExactPosition . ?pfse24 faldo:position ?thisPositionOn26 ; rdf:type faldo:ExactPosition . ?pfs27 up:annotation ?annotation28 . ?annotation28 faldo:begin ?pfsb29 ; faldo:end ?pfse30 ; up:ligand ?ligand31 ; rdf:type up:Binding_Site_Annotation . ?pfsb29 faldo:position ?thisPositionOn32 ; rdf:type faldo:ExactPosition . ?pfse30 faldo:position ?thisPositionOn33 ; rdf:type faldo:ExactPosition . ?ligand31 rdfs:subClassOf chebi:52617 . ?pfs34 up:annotation ?annotation35 . ?annotation35 faldo:begin ?pfsb36 ; faldo:end ?pfse37 ; up:ligand ?ligand38 ; rdf:type up:Binding_Site_Annotation . ?pfsb36 faldo:position ?thisPositionOn39 ; rdf:type faldo:ExactPosition . ?pfse37 faldo:position ?thisPositionOn40 ; rdf:type faldo:ExactPosition . ?ligand38 rdfs:subClassOf chebi:52617 . ?pfs41 up:annotation ?annotation42 . ?annotation42 faldo:begin ?pfsb43 ; faldo:end ?pfse44 ; up:ligand ?ligand45 ; rdf:type up:Binding_Site_Annotation . ?pfsb43 faldo:position ?thisPositionOn46 ; rdf:type faldo:ExactPosition . ?pfse44 faldo:position ?thisPositionOn47 ; rdf:type faldo:ExactPosition . ?ligand45 rdfs:subClassOf chebi:52617 . ?pfs48 up:annotation ?annotation49 . ?annotation49 faldo:begin ?pfsb50 ; faldo:end ?pfse51 ; up:ligand ?ligand52 ; rdf:type up:Binding_Site_Annotation . ?pfsb50 faldo:position ?thisPositionOn53 ; rdf:type faldo:ExactPosition . ?pfse51 faldo:position ?thisPositionOn54 ; rdf:type faldo:ExactPosition . ?ligand52 rdfs:subClassOf chebi:52617 . ?pfs55 up:annotation ?annotation56 . ?annotation56 faldo:begin ?pfsb57 ; faldo:end ?pfse58 ; up:ligand ?ligand59 ; rdf:type up:Binding_Site_Annotation . ?pfsb57 faldo:position ?thisPositionOn60 ; rdf:type faldo:ExactPosition . ?pfse58 faldo:position ?thisPositionOn61 ; rdf:type faldo:ExactPosition . ?ligand59 rdfs:subClassOf chebi:52617 . ?pfs62 up:annotation ?annotation63 . ?annotation63 faldo:begin ?pfsb64 ; faldo:end ?pfse65 ; up:ligand ?ligand66 ; rdf:type up:Binding_Site_Annotation . ?pfsb64 faldo:position ?thisPositionOn67 ; rdf:type faldo:ExactPosition . ?pfse65 faldo:position ?thisPositionOn68 ; rdf:type faldo:ExactPosition . ?ligand66 rdfs:subClassOf chebi:52617 . ?pfs69 up:annotation ?annotation70 . ?annotation70 faldo:begin ?pfsb71 ; faldo:end ?pfse72 ; up:ligand ?ligand73 ; rdf:type up:Binding_Site_Annotation . ?pfsb71 faldo:position ?thisPositionOn74 ; rdf:type faldo:ExactPosition . ?pfse72 faldo:position ?thisPositionOn75 ; rdf:type faldo:ExactPosition . ?ligand73 rdfs:subClassOf chebi:52617 . _:408817 a rdf:Statement ; up:attribution _:408790 ; rdf:subject ?this ; rdf:predicate up:recommendedName ; rdf:object ?name0 . _:408818 a rdf:Statement ; up:attribution _:408791 ; rdf:subject ?this ; rdf:predicate up:alternativeName ; rdf:object ?name1 . _:408819 a rdf:Statement ; up:attribution _:408792 ; rdf:subject ?this ; rdf:predicate up:alternativeName ; rdf:object ?name2 . _:408820 a rdf:Statement ; up:attribution _:408793 ; rdf:subject ?this ; rdf:predicate up:alternativeName ; rdf:object ?name3 . _:408821 a rdf:Statement ; up:attribution _:408794 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation4 . _:408822 a rdf:Statement ; up:attribution _:408795 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation5 . _:408823 a rdf:Statement ; up:attribution _:408796 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation7 . _:408824 a rdf:Statement ; up:attribution _:408797 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation8 . _:408825 a rdf:Statement ; up:attribution _:408798 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:227 . _:408826 a rdf:Statement ; up:attribution _:408799 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:228 . _:408827 a rdf:Statement ; up:attribution _:408800 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:234 . _:408828 a rdf:Statement ; up:attribution _:408801 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:378 . _:408829 a rdf:Statement ; up:attribution _:408802 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:456 . _:408830 a rdf:Statement ; up:attribution _:408803 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object GO:0003906 . _:408831 a rdf:Statement ; up:attribution _:408804 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object GO:0000702 . _:408832 a rdf:Statement ; up:attribution _:408805 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object GO:0006284 . _:408833 a rdf:Statement ; up:attribution _:408806 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object GO:0006281 . _:408834 a rdf:Statement ; up:source unirule:MF_01168 ; rdf:subject ?pfs9 ; rdf:predicate up:annotation ; rdf:object ?annotation10 . _:408835 a rdf:Statement ; up:attribution _:408807 ; rdf:subject ?pfs9 ; rdf:predicate up:annotation ; rdf:object ?annotation10 . _:408836 a rdf:Statement ; up:source unirule:MF_01168 ; rdf:subject ?pfs15 ; rdf:predicate up:annotation ; rdf:object ?annotation16 . _:408837 a rdf:Statement ; up:attribution _:408808 ; rdf:subject ?pfs15 ; rdf:predicate up:annotation ; rdf:object ?annotation16 . _:408838 a rdf:Statement ; up:source unirule:MF_01168 ; rdf:subject ?pfs21 ; rdf:predicate up:annotation ; rdf:object ?annotation22 . _:408839 a rdf:Statement ; up:attribution _:408809 ; rdf:subject ?pfs21 ; rdf:predicate up:annotation ; rdf:object ?annotation22 . _:408840 a rdf:Statement ; up:source unirule:MF_01168 ; rdf:subject ?pfs27 ; rdf:predicate up:annotation ; rdf:object ?annotation28 . _:408841 a rdf:Statement ; up:attribution _:408810 ; rdf:subject ?pfs27 ; rdf:predicate up:annotation ; rdf:object ?annotation28 . _:408842 a rdf:Statement ; up:source unirule:MF_01168 ; rdf:subject ?pfs34 ; rdf:predicate up:annotation ; rdf:object ?annotation35 . _:408843 a rdf:Statement ; up:attribution _:408811 ; rdf:subject ?pfs34 ; rdf:predicate up:annotation ; rdf:object ?annotation35 . _:408844 a rdf:Statement ; up:source unirule:MF_01168 ; rdf:subject ?pfs41 ; rdf:predicate up:annotation ; rdf:object ?annotation42 . _:408845 a rdf:Statement ; up:attribution _:408812 ; rdf:subject ?pfs41 ; rdf:predicate up:annotation ; rdf:object ?annotation42 . _:408846 a rdf:Statement ; up:source unirule:MF_01168 ; rdf:subject ?pfs48 ; rdf:predicate up:annotation ; rdf:object ?annotation49 . _:408847 a rdf:Statement ; up:attribution _:408813 ; rdf:subject ?pfs48 ; rdf:predicate up:annotation ; rdf:object ?annotation49 . _:408848 a rdf:Statement ; up:source unirule:MF_01168 ; rdf:subject ?pfs55 ; rdf:predicate up:annotation ; rdf:object ?annotation56 . _:408849 a rdf:Statement ; up:attribution _:408814 ; rdf:subject ?pfs55 ; rdf:predicate up:annotation ; rdf:object ?annotation56 . _:408850 a rdf:Statement ; up:source unirule:MF_01168 ; rdf:subject ?pfs62 ; rdf:predicate up:annotation ; rdf:object ?annotation63 . _:408851 a rdf:Statement ; up:attribution _:408815 ; rdf:subject ?pfs62 ; rdf:predicate up:annotation ; rdf:object ?annotation63 . _:408852 a rdf:Statement ; up:source unirule:MF_01168 ; rdf:subject ?pfs69 ; rdf:predicate up:annotation ; rdf:object ?annotation70 . _:408853 a rdf:Statement ; up:attribution _:408816 ; rdf:subject ?pfs69 ; rdf:predicate up:annotation ; rdf:object ?annotation70 . } WHERE { #baseURI: http://purl.uniprot.org/unirule/MF_01168 #Rule MF_01168 Created by:? on:2005-12-08 Modified by:Elisabeth Coudert on:2024-01-30 ?this up:organism ?thisOrganism ; rdfs:seeAlso signature:MF_01168 . ?thisOrganism rdfs:subClassOf+ taxon:2157 . BIND(URI(CONCAT(STR(?this), '#MF_01168a0')) AS ?name0) . BIND(URI(CONCAT(STR(?this), '#MF_01168a1')) AS ?name1) . BIND(URI(CONCAT(STR(?this), '#MF_01168a2')) AS ?name2) . BIND(URI(CONCAT(STR(?this), '#MF_01168a3')) AS ?name3) . BIND(URI(CONCAT(STR(?this), '#MF_01168a4')) AS ?annotation4) . BIND(URI(CONCAT(STR(?this), '#MF_01168a5')) AS ?annotation5) . BIND(URI(CONCAT(STR(?this), '#MF_01168a7')) AS ?annotation7) . BIND(URI(CONCAT(STR(?this), '#MF_01168a8')) AS ?annotation8) . OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch80 faldo:location ?templateMotifSequenceMatchRegionQ8ZVK681 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ8ZVK683 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarQ8ZVK6MF_0116876 . ?templateMotifSequenceMatchRegionQ8ZVK681 faldo:begin ?templateMotifSequenceMatchBeginQ8ZVK682 . ?templateMotifSequenceMatchBeginQ8ZVK682 faldo:position ?templateMotifSequenceMatchBeginPositionQ8ZVK677 ; faldo:reference isoform:Q8ZVK6-1 . ?templateMotifSequenceProfileAlignmentOperationQ8ZVK683 edam:has_input signature:MF_01168 ; rdf:type edam:operation_0300 . ?targetMotifMatch84 faldo:location ?targetMotifMatchRegionMatch85 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0116887 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarQ8ZVK6MF_0116878 . ?targetMotifMatchRegionMatch85 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0116886 . ?targetMotifMatchRegionMatchBeginMF_0116886 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0116879 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_0116887 edam:has_input signature:MF_01168 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ8ZVK6MF_0116876, 1, (STRLEN(?templateMotifCigarQ8ZVK6MF_0116876) - STRLEN(REPLACE(?templateMotifCigarQ8ZVK6MF_0116876, CONCAT('^(?:-*[^-]){', STR(((125 - ?templateMotifSequenceMatchBeginPositionQ8ZVK677) + 1)), '}'), '')))), '[a-z]', '')) AS ?step188) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ8ZVK6MF_0116878, 1, (STRLEN(?targetMotifMatchCigarQ8ZVK6MF_0116878) - STRLEN(REPLACE(?targetMotifMatchCigarQ8ZVK6MF_0116878, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step188), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ8ZVK6MF_0116878, 1, (STRLEN(?targetMotifMatchCigarQ8ZVK6MF_0116878) - STRLEN(REPLACE(?targetMotifMatchCigarQ8ZVK6MF_0116878, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step188), '}'), '')))), '[^-]', ''))) AS ?step289) . BIND(((?step289 + ?targetMotifMatchRegionMatchBeginPositionMF_0116879) - 1) AS ?thisPositionOn13) . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ8ZVK6MF_0116876, 1, (STRLEN(?templateMotifCigarQ8ZVK6MF_0116876) - STRLEN(REPLACE(?templateMotifCigarQ8ZVK6MF_0116876, CONCAT('^(?:-*[^-]){', STR(((184 - ?templateMotifSequenceMatchBeginPositionQ8ZVK677) + 1)), '}'), '')))), '[a-z]', '')) AS ?step190) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ8ZVK6MF_0116878, 1, (STRLEN(?targetMotifMatchCigarQ8ZVK6MF_0116878) - STRLEN(REPLACE(?targetMotifMatchCigarQ8ZVK6MF_0116878, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step190), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ8ZVK6MF_0116878, 1, (STRLEN(?targetMotifMatchCigarQ8ZVK6MF_0116878) - STRLEN(REPLACE(?targetMotifMatchCigarQ8ZVK6MF_0116878, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step190), '}'), '')))), '[^-]', ''))) AS ?step291) . BIND(((?step291 + ?targetMotifMatchRegionMatchBeginPositionMF_0116879) - 1) AS ?thisPositionOn14) . BIND(?this AS ?pfs1t92) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn13))) AS ?pfsb11) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn14))) AS ?pfse12) . FILTER ((BOUND(?thisPositionOn13) && BOUND(?thisPositionOn14))) . BIND(URI(CONCAT(STR(?this), '#MF_01168a10')) AS ?annotation10) . BIND(?this AS ?pfs9) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch97 faldo:location ?templateMotifSequenceMatchRegionQ8ZVK698 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ8ZVK6100 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarQ8ZVK6MF_0116893 . ?templateMotifSequenceMatchRegionQ8ZVK698 faldo:begin ?templateMotifSequenceMatchBeginQ8ZVK699 . ?templateMotifSequenceMatchBeginQ8ZVK699 faldo:position ?templateMotifSequenceMatchBeginPositionQ8ZVK694 ; faldo:reference isoform:Q8ZVK6-1 . ?templateMotifSequenceProfileAlignmentOperationQ8ZVK6100 edam:has_input signature:MF_01168 ; rdf:type edam:operation_0300 . ?targetMotifMatch101 faldo:location ?targetMotifMatchRegionMatch102 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01168104 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarQ8ZVK6MF_0116895 . ?targetMotifMatchRegionMatch102 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01168103 . ?targetMotifMatchRegionMatchBeginMF_01168103 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0116896 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_01168104 edam:has_input signature:MF_01168 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ8ZVK6MF_0116893, 1, (STRLEN(?templateMotifCigarQ8ZVK6MF_0116893) - STRLEN(REPLACE(?templateMotifCigarQ8ZVK6MF_0116893, CONCAT('^(?:-*[^-]){', STR(((140 - ?templateMotifSequenceMatchBeginPositionQ8ZVK694) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1105) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ8ZVK6MF_0116895, 1, (STRLEN(?targetMotifMatchCigarQ8ZVK6MF_0116895) - STRLEN(REPLACE(?targetMotifMatchCigarQ8ZVK6MF_0116895, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1105), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ8ZVK6MF_0116895, 1, (STRLEN(?targetMotifMatchCigarQ8ZVK6MF_0116895) - STRLEN(REPLACE(?targetMotifMatchCigarQ8ZVK6MF_0116895, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1105), '}'), '')))), '[^-]', ''))) AS ?step2106) . BIND(((?step2106 + ?targetMotifMatchRegionMatchBeginPositionMF_0116896) - 1) AS ?thisPositionOn19) . BIND(?thisPositionOn19 AS ?thisPositionOn20) . BIND(?this AS ?pfs1t107) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn19))) AS ?pfsb17) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn20))) AS ?pfse18) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn19, 1) = 'K')) . BIND(URI(CONCAT(STR(?this), '#MF_01168a16')) AS ?annotation16) . BIND(?this AS ?pfs15) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch112 faldo:location ?templateMotifSequenceMatchRegionQ8ZVK6113 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ8ZVK6115 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarQ8ZVK6MF_01168108 . ?templateMotifSequenceMatchRegionQ8ZVK6113 faldo:begin ?templateMotifSequenceMatchBeginQ8ZVK6114 . ?templateMotifSequenceMatchBeginQ8ZVK6114 faldo:position ?templateMotifSequenceMatchBeginPositionQ8ZVK6109 ; faldo:reference isoform:Q8ZVK6-1 . ?templateMotifSequenceProfileAlignmentOperationQ8ZVK6115 edam:has_input signature:MF_01168 ; rdf:type edam:operation_0300 . ?targetMotifMatch116 faldo:location ?targetMotifMatchRegionMatch117 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01168119 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarQ8ZVK6MF_01168110 . ?targetMotifMatchRegionMatch117 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01168118 . ?targetMotifMatchRegionMatchBeginMF_01168118 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01168111 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_01168119 edam:has_input signature:MF_01168 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ8ZVK6MF_01168108, 1, (STRLEN(?templateMotifCigarQ8ZVK6MF_01168108) - STRLEN(REPLACE(?templateMotifCigarQ8ZVK6MF_01168108, CONCAT('^(?:-*[^-]){', STR(((172 - ?templateMotifSequenceMatchBeginPositionQ8ZVK6109) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1120) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ8ZVK6MF_01168110, 1, (STRLEN(?targetMotifMatchCigarQ8ZVK6MF_01168110) - STRLEN(REPLACE(?targetMotifMatchCigarQ8ZVK6MF_01168110, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1120), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ8ZVK6MF_01168110, 1, (STRLEN(?targetMotifMatchCigarQ8ZVK6MF_01168110) - STRLEN(REPLACE(?targetMotifMatchCigarQ8ZVK6MF_01168110, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1120), '}'), '')))), '[^-]', ''))) AS ?step2121) . BIND(((?step2121 + ?targetMotifMatchRegionMatchBeginPositionMF_01168111) - 1) AS ?thisPositionOn25) . BIND(?thisPositionOn25 AS ?thisPositionOn26) . BIND(?this AS ?pfs1t122) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn25))) AS ?pfsb23) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn26))) AS ?pfse24) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn25, 1) = 'D')) . BIND(URI(CONCAT(STR(?this), '#MF_01168a22')) AS ?annotation22) . BIND(?this AS ?pfs21) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch127 faldo:location ?templateMotifSequenceMatchRegionQ8ZVK6128 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ8ZVK6130 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarQ8ZVK6MF_01168123 . ?templateMotifSequenceMatchRegionQ8ZVK6128 faldo:begin ?templateMotifSequenceMatchBeginQ8ZVK6129 . ?templateMotifSequenceMatchBeginQ8ZVK6129 faldo:position ?templateMotifSequenceMatchBeginPositionQ8ZVK6124 ; faldo:reference isoform:Q8ZVK6-1 . ?templateMotifSequenceProfileAlignmentOperationQ8ZVK6130 edam:has_input signature:MF_01168 ; rdf:type edam:operation_0300 . ?targetMotifMatch131 faldo:location ?targetMotifMatchRegionMatch132 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01168134 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarQ8ZVK6MF_01168125 . ?targetMotifMatchRegionMatch132 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01168133 . ?targetMotifMatchRegionMatchBeginMF_01168133 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01168126 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_01168134 edam:has_input signature:MF_01168 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ8ZVK6MF_01168123, 1, (STRLEN(?templateMotifCigarQ8ZVK6MF_01168123) - STRLEN(REPLACE(?templateMotifCigarQ8ZVK6MF_01168123, CONCAT('^(?:-*[^-]){', STR(((31 - ?templateMotifSequenceMatchBeginPositionQ8ZVK6124) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1135) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ8ZVK6MF_01168125, 1, (STRLEN(?targetMotifMatchCigarQ8ZVK6MF_01168125) - STRLEN(REPLACE(?targetMotifMatchCigarQ8ZVK6MF_01168125, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1135), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ8ZVK6MF_01168125, 1, (STRLEN(?targetMotifMatchCigarQ8ZVK6MF_01168125) - STRLEN(REPLACE(?targetMotifMatchCigarQ8ZVK6MF_01168125, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1135), '}'), '')))), '[^-]', ''))) AS ?step2136) . BIND(((?step2136 + ?targetMotifMatchRegionMatchBeginPositionMF_01168126) - 1) AS ?thisPositionOn32) . BIND(?thisPositionOn32 AS ?thisPositionOn33) . BIND(?this AS ?pfs1t137) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn32))) AS ?pfsb29) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn33))) AS ?pfse30) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn32, 1) = 'Q')) . BIND(URI(CONCAT(STR(?this), '#MF_01168a28')) AS ?annotation28) . BIND(?this AS ?pfs27) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch142 faldo:location ?templateMotifSequenceMatchRegionQ8ZVK6143 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ8ZVK6145 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarQ8ZVK6MF_01168138 . ?templateMotifSequenceMatchRegionQ8ZVK6143 faldo:begin ?templateMotifSequenceMatchBeginQ8ZVK6144 . ?templateMotifSequenceMatchBeginQ8ZVK6144 faldo:position ?templateMotifSequenceMatchBeginPositionQ8ZVK6139 ; faldo:reference isoform:Q8ZVK6-1 . ?templateMotifSequenceProfileAlignmentOperationQ8ZVK6145 edam:has_input signature:MF_01168 ; rdf:type edam:operation_0300 . ?targetMotifMatch146 faldo:location ?targetMotifMatchRegionMatch147 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01168149 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarQ8ZVK6MF_01168140 . ?targetMotifMatchRegionMatch147 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01168148 . ?targetMotifMatchRegionMatchBeginMF_01168148 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01168141 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_01168149 edam:has_input signature:MF_01168 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ8ZVK6MF_01168138, 1, (STRLEN(?templateMotifCigarQ8ZVK6MF_01168138) - STRLEN(REPLACE(?templateMotifCigarQ8ZVK6MF_01168138, CONCAT('^(?:-*[^-]){', STR(((58 - ?templateMotifSequenceMatchBeginPositionQ8ZVK6139) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1150) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ8ZVK6MF_01168140, 1, (STRLEN(?targetMotifMatchCigarQ8ZVK6MF_01168140) - STRLEN(REPLACE(?targetMotifMatchCigarQ8ZVK6MF_01168140, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1150), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ8ZVK6MF_01168140, 1, (STRLEN(?targetMotifMatchCigarQ8ZVK6MF_01168140) - STRLEN(REPLACE(?targetMotifMatchCigarQ8ZVK6MF_01168140, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1150), '}'), '')))), '[^-]', ''))) AS ?step2151) . BIND(((?step2151 + ?targetMotifMatchRegionMatchBeginPositionMF_01168141) - 1) AS ?thisPositionOn39) . BIND(?thisPositionOn39 AS ?thisPositionOn40) . BIND(?this AS ?pfs1t152) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn39))) AS ?pfsb36) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn40))) AS ?pfse37) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn39, 1) = 'S')) . BIND(URI(CONCAT(STR(?this), '#MF_01168a35')) AS ?annotation35) . BIND(?this AS ?pfs34) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch157 faldo:location ?templateMotifSequenceMatchRegionQ8ZVK6158 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ8ZVK6160 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarQ8ZVK6MF_01168153 . ?templateMotifSequenceMatchRegionQ8ZVK6158 faldo:begin ?templateMotifSequenceMatchBeginQ8ZVK6159 . ?templateMotifSequenceMatchBeginQ8ZVK6159 faldo:position ?templateMotifSequenceMatchBeginPositionQ8ZVK6154 ; faldo:reference isoform:Q8ZVK6-1 . ?templateMotifSequenceProfileAlignmentOperationQ8ZVK6160 edam:has_input signature:MF_01168 ; rdf:type edam:operation_0300 . ?targetMotifMatch161 faldo:location ?targetMotifMatchRegionMatch162 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01168164 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarQ8ZVK6MF_01168155 . ?targetMotifMatchRegionMatch162 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01168163 . ?targetMotifMatchRegionMatchBeginMF_01168163 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01168156 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_01168164 edam:has_input signature:MF_01168 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ8ZVK6MF_01168153, 1, (STRLEN(?templateMotifCigarQ8ZVK6MF_01168153) - STRLEN(REPLACE(?templateMotifCigarQ8ZVK6MF_01168153, CONCAT('^(?:-*[^-]){', STR(((69 - ?templateMotifSequenceMatchBeginPositionQ8ZVK6154) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1165) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ8ZVK6MF_01168155, 1, (STRLEN(?targetMotifMatchCigarQ8ZVK6MF_01168155) - STRLEN(REPLACE(?targetMotifMatchCigarQ8ZVK6MF_01168155, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1165), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ8ZVK6MF_01168155, 1, (STRLEN(?targetMotifMatchCigarQ8ZVK6MF_01168155) - STRLEN(REPLACE(?targetMotifMatchCigarQ8ZVK6MF_01168155, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1165), '}'), '')))), '[^-]', ''))) AS ?step2166) . BIND(((?step2166 + ?targetMotifMatchRegionMatchBeginPositionMF_01168156) - 1) AS ?thisPositionOn46) . BIND(?thisPositionOn46 AS ?thisPositionOn47) . BIND(?this AS ?pfs1t167) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn46))) AS ?pfsb43) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn47))) AS ?pfse44) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn46, 1) = 'W')) . BIND(URI(CONCAT(STR(?this), '#MF_01168a42')) AS ?annotation42) . BIND(?this AS ?pfs41) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch172 faldo:location ?templateMotifSequenceMatchRegionQ8ZVK6173 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ8ZVK6175 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarQ8ZVK6MF_01168168 . ?templateMotifSequenceMatchRegionQ8ZVK6173 faldo:begin ?templateMotifSequenceMatchBeginQ8ZVK6174 . ?templateMotifSequenceMatchBeginQ8ZVK6174 faldo:position ?templateMotifSequenceMatchBeginPositionQ8ZVK6169 ; faldo:reference isoform:Q8ZVK6-1 . ?templateMotifSequenceProfileAlignmentOperationQ8ZVK6175 edam:has_input signature:MF_01168 ; rdf:type edam:operation_0300 . ?targetMotifMatch176 faldo:location ?targetMotifMatchRegionMatch177 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01168179 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarQ8ZVK6MF_01168170 . ?targetMotifMatchRegionMatch177 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01168178 . ?targetMotifMatchRegionMatchBeginMF_01168178 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01168171 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_01168179 edam:has_input signature:MF_01168 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ8ZVK6MF_01168168, 1, (STRLEN(?templateMotifCigarQ8ZVK6MF_01168168) - STRLEN(REPLACE(?templateMotifCigarQ8ZVK6MF_01168168, CONCAT('^(?:-*[^-]){', STR(((144 - ?templateMotifSequenceMatchBeginPositionQ8ZVK6169) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1180) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ8ZVK6MF_01168170, 1, (STRLEN(?targetMotifMatchCigarQ8ZVK6MF_01168170) - STRLEN(REPLACE(?targetMotifMatchCigarQ8ZVK6MF_01168170, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1180), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ8ZVK6MF_01168170, 1, (STRLEN(?targetMotifMatchCigarQ8ZVK6MF_01168170) - STRLEN(REPLACE(?targetMotifMatchCigarQ8ZVK6MF_01168170, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1180), '}'), '')))), '[^-]', ''))) AS ?step2181) . BIND(((?step2181 + ?targetMotifMatchRegionMatchBeginPositionMF_01168171) - 1) AS ?thisPositionOn53) . BIND(?thisPositionOn53 AS ?thisPositionOn54) . BIND(?this AS ?pfs1t182) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn53))) AS ?pfsb50) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn54))) AS ?pfse51) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn53, 1) = 'F')) . BIND(URI(CONCAT(STR(?this), '#MF_01168a49')) AS ?annotation49) . BIND(?this AS ?pfs48) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch187 faldo:location ?templateMotifSequenceMatchRegionQ8ZVK6188 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ8ZVK6190 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarQ8ZVK6MF_01168183 . ?templateMotifSequenceMatchRegionQ8ZVK6188 faldo:begin ?templateMotifSequenceMatchBeginQ8ZVK6189 . ?templateMotifSequenceMatchBeginQ8ZVK6189 faldo:position ?templateMotifSequenceMatchBeginPositionQ8ZVK6184 ; faldo:reference isoform:Q8ZVK6-1 . ?templateMotifSequenceProfileAlignmentOperationQ8ZVK6190 edam:has_input signature:MF_01168 ; rdf:type edam:operation_0300 . ?targetMotifMatch191 faldo:location ?targetMotifMatchRegionMatch192 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01168194 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarQ8ZVK6MF_01168185 . ?targetMotifMatchRegionMatch192 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01168193 . ?targetMotifMatchRegionMatchBeginMF_01168193 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01168186 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_01168194 edam:has_input signature:MF_01168 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ8ZVK6MF_01168183, 1, (STRLEN(?templateMotifCigarQ8ZVK6MF_01168183) - STRLEN(REPLACE(?templateMotifCigarQ8ZVK6MF_01168183, CONCAT('^(?:-*[^-]){', STR(((170 - ?templateMotifSequenceMatchBeginPositionQ8ZVK6184) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1195) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ8ZVK6MF_01168185, 1, (STRLEN(?targetMotifMatchCigarQ8ZVK6MF_01168185) - STRLEN(REPLACE(?targetMotifMatchCigarQ8ZVK6MF_01168185, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1195), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ8ZVK6MF_01168185, 1, (STRLEN(?targetMotifMatchCigarQ8ZVK6MF_01168185) - STRLEN(REPLACE(?targetMotifMatchCigarQ8ZVK6MF_01168185, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1195), '}'), '')))), '[^-]', ''))) AS ?step2196) . BIND(((?step2196 + ?targetMotifMatchRegionMatchBeginPositionMF_01168186) - 1) AS ?thisPositionOn60) . BIND(?thisPositionOn60 AS ?thisPositionOn61) . BIND(?this AS ?pfs1t197) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn60))) AS ?pfsb57) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn61))) AS ?pfse58) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn60, 1) = 'P')) . BIND(URI(CONCAT(STR(?this), '#MF_01168a56')) AS ?annotation56) . BIND(?this AS ?pfs55) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch202 faldo:location ?templateMotifSequenceMatchRegionQ8ZVK6203 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ8ZVK6205 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarQ8ZVK6MF_01168198 . ?templateMotifSequenceMatchRegionQ8ZVK6203 faldo:begin ?templateMotifSequenceMatchBeginQ8ZVK6204 . ?templateMotifSequenceMatchBeginQ8ZVK6204 faldo:position ?templateMotifSequenceMatchBeginPositionQ8ZVK6199 ; faldo:reference isoform:Q8ZVK6-1 . ?templateMotifSequenceProfileAlignmentOperationQ8ZVK6205 edam:has_input signature:MF_01168 ; rdf:type edam:operation_0300 . ?targetMotifMatch206 faldo:location ?targetMotifMatchRegionMatch207 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01168209 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarQ8ZVK6MF_01168200 . ?targetMotifMatchRegionMatch207 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01168208 . ?targetMotifMatchRegionMatchBeginMF_01168208 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01168201 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_01168209 edam:has_input signature:MF_01168 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ8ZVK6MF_01168198, 1, (STRLEN(?templateMotifCigarQ8ZVK6MF_01168198) - STRLEN(REPLACE(?templateMotifCigarQ8ZVK6MF_01168198, CONCAT('^(?:-*[^-]){', STR(((218 - ?templateMotifSequenceMatchBeginPositionQ8ZVK6199) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1210) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ8ZVK6MF_01168200, 1, (STRLEN(?targetMotifMatchCigarQ8ZVK6MF_01168200) - STRLEN(REPLACE(?targetMotifMatchCigarQ8ZVK6MF_01168200, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1210), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ8ZVK6MF_01168200, 1, (STRLEN(?targetMotifMatchCigarQ8ZVK6MF_01168200) - STRLEN(REPLACE(?targetMotifMatchCigarQ8ZVK6MF_01168200, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1210), '}'), '')))), '[^-]', ''))) AS ?step2211) . BIND(((?step2211 + ?targetMotifMatchRegionMatchBeginPositionMF_01168201) - 1) AS ?thisPositionOn67) . BIND(?thisPositionOn67 AS ?thisPositionOn68) . BIND(?this AS ?pfs1t212) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn67))) AS ?pfsb64) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn68))) AS ?pfse65) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn67, 1) = 'D')) . BIND(URI(CONCAT(STR(?this), '#MF_01168a63')) AS ?annotation63) . BIND(?this AS ?pfs62) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch217 faldo:location ?templateMotifSequenceMatchRegionQ8ZVK6218 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ8ZVK6220 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarQ8ZVK6MF_01168213 . ?templateMotifSequenceMatchRegionQ8ZVK6218 faldo:begin ?templateMotifSequenceMatchBeginQ8ZVK6219 . ?templateMotifSequenceMatchBeginQ8ZVK6219 faldo:position ?templateMotifSequenceMatchBeginPositionQ8ZVK6214 ; faldo:reference isoform:Q8ZVK6-1 . ?templateMotifSequenceProfileAlignmentOperationQ8ZVK6220 edam:has_input signature:MF_01168 ; rdf:type edam:operation_0300 . ?targetMotifMatch221 faldo:location ?targetMotifMatchRegionMatch222 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01168224 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarQ8ZVK6MF_01168215 . ?targetMotifMatchRegionMatch222 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01168223 . ?targetMotifMatchRegionMatchBeginMF_01168223 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01168216 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_01168224 edam:has_input signature:MF_01168 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ8ZVK6MF_01168213, 1, (STRLEN(?templateMotifCigarQ8ZVK6MF_01168213) - STRLEN(REPLACE(?templateMotifCigarQ8ZVK6MF_01168213, CONCAT('^(?:-*[^-]){', STR(((222 - ?templateMotifSequenceMatchBeginPositionQ8ZVK6214) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1225) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ8ZVK6MF_01168215, 1, (STRLEN(?targetMotifMatchCigarQ8ZVK6MF_01168215) - STRLEN(REPLACE(?targetMotifMatchCigarQ8ZVK6MF_01168215, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1225), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ8ZVK6MF_01168215, 1, (STRLEN(?targetMotifMatchCigarQ8ZVK6MF_01168215) - STRLEN(REPLACE(?targetMotifMatchCigarQ8ZVK6MF_01168215, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1225), '}'), '')))), '[^-]', ''))) AS ?step2226) . BIND(((?step2226 + ?targetMotifMatchRegionMatchBeginPositionMF_01168216) - 1) AS ?thisPositionOn74) . BIND(?thisPositionOn74 AS ?thisPositionOn75) . BIND(?this AS ?pfs1t227) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn74))) AS ?pfsb71) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn75))) AS ?pfse72) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn74, 1) = 'W')) . BIND(URI(CONCAT(STR(?this), '#MF_01168a70')) AS ?annotation70) . BIND(?this AS ?pfs69) . } }