CONSTRUCT { _:403264 up:source unirule:MF_01172 . _:403265 up:source unirule:MF_01172 . _:403266 up:source unirule:MF_01172 . _:403267 up:source unirule:MF_01172 . _:403268 up:source unirule:MF_01172 . _:403269 up:source unirule:MF_01172 . _:403270 up:source unirule:MF_01172 . _:403271 up:source unirule:MF_01172 . _:403272 up:source unirule:MF_01172 . _:403273 up:source unirule:MF_01172 . _:403274 up:source unirule:MF_01172 . _:403275 up:source unirule:MF_01172 . _:403276 up:source unirule:MF_01172 . _:403277 up:source unirule:MF_01172 . _:403278 up:source unirule:MF_01172 . _:403279 up:source unirule:MF_01172 . _:403280 up:source unirule:MF_01172 . _:403281 up:source unirule:MF_01172 . _:403282 up:source unirule:MF_01172 . _:403283 up:source unirule:MF_01172 . ?this up:annotation ?annotation2 , ?annotation3 , ?annotation5 , ?annotation6 , ?annotation7 ; up:classifiedWith GO:0009015 , GO:0019544 , keyword:378 , keyword:56 ; up:recommendedName ?name0 . ?name0 up:ecName '3.5.3.23' ; up:fullName 'N-succinylarginine dihydrolase' ; rdf:type up:Structured_Name . ?gene1 skos:prefLabel 'astB' . ?annotation2 a up:Function_Annotation ; rdfs:comment 'Catalyzes the hydrolysis of N(2)-succinylarginine into N(2)-succinylornithine, ammonia and CO(2).' . ?annotation3 up:activity ?activity4 ; rdf:type up:Catalytic_Activity_Annotation . ?activity4 up:catalyticActivity <http://rdf.rhea-db.org/19533>; up:enzymeClass <http://purl.uniprot.org/enzyme/3.5.3.23>. ?annotation5 a up:Pathway_Annotation ; rdfs:comment 'Amino-acid degradation; L-arginine degradation via AST pathway; L-glutamate and succinate from L-arginine: step 2/5.' . ?annotation6 a up:Subunit_Annotation ; rdfs:comment 'Homodimer.' . ?annotation7 a up:Similarity_Annotation ; rdfs:comment 'Belongs to the succinylarginine dihydrolase family.' . ?pfs8 up:annotation ?annotation9 . ?annotation9 faldo:begin ?pfsb10 ; faldo:end ?pfse11 ; up:ligand ?ligand12 ; rdf:type up:Binding_Site_Annotation . ?pfsb10 faldo:position ?thisPositionOn14 ; rdf:type faldo:ExactPosition . ?pfse11 faldo:position ?thisPositionOn15 ; rdf:type faldo:ExactPosition . ?ligand12 rdfs:subClassOf ?molecule13 . ?molecule13 rdfs:label 'substrate' . ?pfs16 up:annotation ?annotation17 . ?annotation17 faldo:begin ?pfsb18 ; faldo:end ?pfse19 ; up:ligand ?ligand20 ; rdf:type up:Binding_Site_Annotation . ?pfsb18 faldo:position ?thisPositionOn22 ; rdf:type faldo:ExactPosition . ?pfse19 faldo:position ?thisPositionOn23 ; rdf:type faldo:ExactPosition . ?ligand20 rdfs:subClassOf ?molecule21 . ?molecule21 rdfs:label 'substrate' . ?pfs24 up:annotation ?annotation25 . ?annotation25 faldo:begin ?pfsb26 ; faldo:end ?pfse27 ; rdf:type up:Active_Site_Annotation . ?pfsb26 faldo:position ?thisPositionOn28 ; rdf:type faldo:ExactPosition . ?pfse27 faldo:position ?thisPositionOn29 ; rdf:type faldo:ExactPosition . ?pfs30 up:annotation ?annotation31 . ?annotation31 faldo:begin ?pfsb32 ; faldo:end ?pfse33 ; rdf:type up:Active_Site_Annotation . ?pfsb32 faldo:position ?thisPositionOn34 ; rdf:type faldo:ExactPosition . ?pfse33 faldo:position ?thisPositionOn35 ; rdf:type faldo:ExactPosition . ?pfs36 up:annotation ?annotation37 . ?annotation37 faldo:begin ?pfsb38 ; faldo:end ?pfse39 ; rdf:type up:Active_Site_Annotation ; rdfs:comment 'Nucleophile' . ?pfsb38 faldo:position ?thisPositionOn40 ; rdf:type faldo:ExactPosition . ?pfse39 faldo:position ?thisPositionOn41 ; rdf:type faldo:ExactPosition . ?pfs42 up:annotation ?annotation43 . ?annotation43 faldo:begin ?pfsb44 ; faldo:end ?pfse45 ; up:ligand ?ligand46 ; rdf:type up:Binding_Site_Annotation . ?pfsb44 faldo:position ?thisPositionOn48 ; rdf:type faldo:ExactPosition . ?pfse45 faldo:position ?thisPositionOn49 ; rdf:type faldo:ExactPosition . ?ligand46 rdfs:subClassOf ?molecule47 . ?molecule47 rdfs:label 'substrate' . ?pfs50 up:annotation ?annotation51 . ?annotation51 faldo:begin ?pfsb52 ; faldo:end ?pfse53 ; up:ligand ?ligand54 ; rdf:type up:Binding_Site_Annotation . ?pfsb52 faldo:position ?thisPositionOn56 ; rdf:type faldo:ExactPosition . ?pfse53 faldo:position ?thisPositionOn57 ; rdf:type faldo:ExactPosition . ?ligand54 rdfs:subClassOf ?molecule55 . ?molecule55 rdfs:label 'substrate' . ?pfs58 up:annotation ?annotation59 . ?annotation59 faldo:begin ?pfsb60 ; faldo:end ?pfse61 ; up:ligand ?ligand62 ; rdf:type up:Binding_Site_Annotation . ?pfsb60 faldo:position ?thisPositionOn64 ; rdf:type faldo:ExactPosition . ?pfse61 faldo:position ?thisPositionOn65 ; rdf:type faldo:ExactPosition . ?ligand62 rdfs:subClassOf ?molecule63 . ?molecule63 rdfs:label 'substrate' . ?pfs66 up:annotation ?annotation67 . ?annotation67 faldo:begin ?pfsb68 ; faldo:end ?pfse69 ; up:ligand ?ligand70 ; rdf:type up:Binding_Site_Annotation . ?pfsb68 faldo:position ?thisPositionOn72 ; rdf:type faldo:ExactPosition . ?pfse69 faldo:position ?thisPositionOn73 ; rdf:type faldo:ExactPosition . ?ligand70 rdfs:subClassOf ?molecule71 . ?molecule71 rdfs:label 'substrate' . _:403284 a rdf:Statement ; up:attribution _:403264 ; rdf:subject ?this ; rdf:predicate up:recommendedName ; rdf:object ?name0 . _:403285 a rdf:Statement ; up:attribution _:403265 ; rdf:subject ?gene1 ; rdf:predicate up:encodedBy ; rdf:object ?gene1 . _:403286 a rdf:Statement ; up:attribution _:403266 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation2 . _:403287 a rdf:Statement ; up:attribution _:403267 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation3 . _:403288 a rdf:Statement ; up:attribution _:403268 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation5 . _:403289 a rdf:Statement ; up:attribution _:403269 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation6 . _:403290 a rdf:Statement ; up:attribution _:403270 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation7 . _:403291 a rdf:Statement ; up:attribution _:403271 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:56 . _:403292 a rdf:Statement ; up:attribution _:403272 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:378 . _:403293 a rdf:Statement ; up:attribution _:403273 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object GO:0009015 . _:403294 a rdf:Statement ; up:attribution _:403274 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object GO:0019544 . _:403295 a rdf:Statement ; up:source unirule:MF_01172 ; rdf:subject ?pfs8 ; rdf:predicate up:annotation ; rdf:object ?annotation9 . _:403296 a rdf:Statement ; up:attribution _:403275 ; rdf:subject ?pfs8 ; rdf:predicate up:annotation ; rdf:object ?annotation9 . _:403297 a rdf:Statement ; up:source unirule:MF_01172 ; rdf:subject ?pfs16 ; rdf:predicate up:annotation ; rdf:object ?annotation17 . _:403298 a rdf:Statement ; up:attribution _:403276 ; rdf:subject ?pfs16 ; rdf:predicate up:annotation ; rdf:object ?annotation17 . _:403299 a rdf:Statement ; up:source unirule:MF_01172 ; rdf:subject ?pfs24 ; rdf:predicate up:annotation ; rdf:object ?annotation25 . _:403300 a rdf:Statement ; up:attribution _:403277 ; rdf:subject ?pfs24 ; rdf:predicate up:annotation ; rdf:object ?annotation25 . _:403301 a rdf:Statement ; up:source unirule:MF_01172 ; rdf:subject ?pfs30 ; rdf:predicate up:annotation ; rdf:object ?annotation31 . _:403302 a rdf:Statement ; up:attribution _:403278 ; rdf:subject ?pfs30 ; rdf:predicate up:annotation ; rdf:object ?annotation31 . _:403303 a rdf:Statement ; up:source unirule:MF_01172 ; rdf:subject ?pfs36 ; rdf:predicate up:annotation ; rdf:object ?annotation37 . _:403304 a rdf:Statement ; up:attribution _:403279 ; rdf:subject ?pfs36 ; rdf:predicate up:annotation ; rdf:object ?annotation37 . _:403305 a rdf:Statement ; up:source unirule:MF_01172 ; rdf:subject ?pfs42 ; rdf:predicate up:annotation ; rdf:object ?annotation43 . _:403306 a rdf:Statement ; up:attribution _:403280 ; rdf:subject ?pfs42 ; rdf:predicate up:annotation ; rdf:object ?annotation43 . _:403307 a rdf:Statement ; up:source unirule:MF_01172 ; rdf:subject ?pfs50 ; rdf:predicate up:annotation ; rdf:object ?annotation51 . _:403308 a rdf:Statement ; up:attribution _:403281 ; rdf:subject ?pfs50 ; rdf:predicate up:annotation ; rdf:object ?annotation51 . _:403309 a rdf:Statement ; up:source unirule:MF_01172 ; rdf:subject ?pfs58 ; rdf:predicate up:annotation ; rdf:object ?annotation59 . _:403310 a rdf:Statement ; up:attribution _:403282 ; rdf:subject ?pfs58 ; rdf:predicate up:annotation ; rdf:object ?annotation59 . _:403311 a rdf:Statement ; up:source unirule:MF_01172 ; rdf:subject ?pfs66 ; rdf:predicate up:annotation ; rdf:object ?annotation67 . _:403312 a rdf:Statement ; up:attribution _:403283 ; rdf:subject ?pfs66 ; rdf:predicate up:annotation ; rdf:object ?annotation67 . } WHERE { #baseURI: http://purl.uniprot.org/unirule/MF_01172 #Rule MF_01172 Created by:tlima on:2006-11-03 Modified by:ecastro on:2023-06-01 ?this up:organism ?thisOrganism ; rdfs:seeAlso signature:MF_01172 . ?thisOrganism rdfs:subClassOf+ taxon:1224 . BIND(URI(CONCAT(STR(?this), '#MF_01172a0')) AS ?name0) . BIND(URI(CONCAT(STR(?this), '#MF_01172a2')) AS ?annotation2) . BIND(URI(CONCAT(STR(?this), '#MF_01172a3')) AS ?annotation3) . BIND(URI(CONCAT(STR(?this), '#MF_01172a5')) AS ?annotation5) . BIND(URI(CONCAT(STR(?this), '#MF_01172a6')) AS ?annotation6) . BIND(URI(CONCAT(STR(?this), '#MF_01172a7')) AS ?annotation7) . OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch78 faldo:location ?templateMotifSequenceMatchRegionP7621679 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP7621681 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP76216MF_0117274 . ?templateMotifSequenceMatchRegionP7621679 faldo:begin ?templateMotifSequenceMatchBeginP7621680 . ?templateMotifSequenceMatchBeginP7621680 faldo:position ?templateMotifSequenceMatchBeginPositionP7621675 ; faldo:reference isoform:P76216-1 . ?templateMotifSequenceProfileAlignmentOperationP7621681 edam:has_input signature:MF_01172 ; rdf:type edam:operation_0300 . ?targetMotifMatch82 faldo:location ?targetMotifMatchRegionMatch83 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0117285 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP76216MF_0117276 . ?targetMotifMatchRegionMatch83 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0117284 . ?targetMotifMatchRegionMatchBeginMF_0117284 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0117277 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_0117285 edam:has_input signature:MF_01172 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP76216MF_0117274, 1, (STRLEN(?templateMotifCigarP76216MF_0117274) - STRLEN(REPLACE(?templateMotifCigarP76216MF_0117274, CONCAT('^(?:-*[^-]){', STR(((19 - ?templateMotifSequenceMatchBeginPositionP7621675) + 1)), '}'), '')))), '[a-z]', '')) AS ?step186) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP76216MF_0117276, 1, (STRLEN(?targetMotifMatchCigarP76216MF_0117276) - STRLEN(REPLACE(?targetMotifMatchCigarP76216MF_0117276, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step186), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP76216MF_0117276, 1, (STRLEN(?targetMotifMatchCigarP76216MF_0117276) - STRLEN(REPLACE(?targetMotifMatchCigarP76216MF_0117276, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step186), '}'), '')))), '[^-]', ''))) AS ?step287) . BIND(((?step287 + ?targetMotifMatchRegionMatchBeginPositionMF_0117277) - 1) AS ?thisPositionOn14) . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP76216MF_0117274, 1, (STRLEN(?templateMotifCigarP76216MF_0117274) - STRLEN(REPLACE(?templateMotifCigarP76216MF_0117274, CONCAT('^(?:-*[^-]){', STR(((28 - ?templateMotifSequenceMatchBeginPositionP7621675) + 1)), '}'), '')))), '[a-z]', '')) AS ?step188) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP76216MF_0117276, 1, (STRLEN(?targetMotifMatchCigarP76216MF_0117276) - STRLEN(REPLACE(?targetMotifMatchCigarP76216MF_0117276, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step188), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP76216MF_0117276, 1, (STRLEN(?targetMotifMatchCigarP76216MF_0117276) - STRLEN(REPLACE(?targetMotifMatchCigarP76216MF_0117276, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step188), '}'), '')))), '[^-]', ''))) AS ?step289) . BIND(((?step289 + ?targetMotifMatchRegionMatchBeginPositionMF_0117277) - 1) AS ?thisPositionOn15) . BIND(?this AS ?pfs1t90) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn14))) AS ?pfsb10) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn15))) AS ?pfse11) . FILTER ((BOUND(?thisPositionOn14) && BOUND(?thisPositionOn15))) . BIND(URI(CONCAT(STR(?this), '#MF_01172a9')) AS ?annotation9) . BIND(?this AS ?pfs8) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch95 faldo:location ?templateMotifSequenceMatchRegionP7621696 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP7621698 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP76216MF_0117291 . ?templateMotifSequenceMatchRegionP7621696 faldo:begin ?templateMotifSequenceMatchBeginP7621697 . ?templateMotifSequenceMatchBeginP7621697 faldo:position ?templateMotifSequenceMatchBeginPositionP7621692 ; faldo:reference isoform:P76216-1 . ?templateMotifSequenceProfileAlignmentOperationP7621698 edam:has_input signature:MF_01172 ; rdf:type edam:operation_0300 . ?targetMotifMatch99 faldo:location ?targetMotifMatchRegionMatch100 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01172102 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP76216MF_0117293 . ?targetMotifMatchRegionMatch100 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01172101 . ?targetMotifMatchRegionMatchBeginMF_01172101 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0117294 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_01172102 edam:has_input signature:MF_01172 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP76216MF_0117291, 1, (STRLEN(?templateMotifCigarP76216MF_0117291) - STRLEN(REPLACE(?templateMotifCigarP76216MF_0117291, CONCAT('^(?:-*[^-]){', STR(((137 - ?templateMotifSequenceMatchBeginPositionP7621692) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1103) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP76216MF_0117293, 1, (STRLEN(?targetMotifMatchCigarP76216MF_0117293) - STRLEN(REPLACE(?targetMotifMatchCigarP76216MF_0117293, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1103), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP76216MF_0117293, 1, (STRLEN(?targetMotifMatchCigarP76216MF_0117293) - STRLEN(REPLACE(?targetMotifMatchCigarP76216MF_0117293, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1103), '}'), '')))), '[^-]', ''))) AS ?step2104) . BIND(((?step2104 + ?targetMotifMatchRegionMatchBeginPositionMF_0117294) - 1) AS ?thisPositionOn22) . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP76216MF_0117291, 1, (STRLEN(?templateMotifCigarP76216MF_0117291) - STRLEN(REPLACE(?templateMotifCigarP76216MF_0117291, CONCAT('^(?:-*[^-]){', STR(((138 - ?templateMotifSequenceMatchBeginPositionP7621692) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1105) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP76216MF_0117293, 1, (STRLEN(?targetMotifMatchCigarP76216MF_0117293) - STRLEN(REPLACE(?targetMotifMatchCigarP76216MF_0117293, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1105), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP76216MF_0117293, 1, (STRLEN(?targetMotifMatchCigarP76216MF_0117293) - STRLEN(REPLACE(?targetMotifMatchCigarP76216MF_0117293, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1105), '}'), '')))), '[^-]', ''))) AS ?step2106) . BIND(((?step2106 + ?targetMotifMatchRegionMatchBeginPositionMF_0117294) - 1) AS ?thisPositionOn23) . BIND(?this AS ?pfs1t107) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn22))) AS ?pfsb18) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn23))) AS ?pfse19) . FILTER ((BOUND(?thisPositionOn22) && BOUND(?thisPositionOn23))) . BIND(URI(CONCAT(STR(?this), '#MF_01172a17')) AS ?annotation17) . BIND(?this AS ?pfs16) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch112 faldo:location ?templateMotifSequenceMatchRegionP76216113 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP76216115 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP76216MF_01172108 . ?templateMotifSequenceMatchRegionP76216113 faldo:begin ?templateMotifSequenceMatchBeginP76216114 . ?templateMotifSequenceMatchBeginP76216114 faldo:position ?templateMotifSequenceMatchBeginPositionP76216109 ; faldo:reference isoform:P76216-1 . ?templateMotifSequenceProfileAlignmentOperationP76216115 edam:has_input signature:MF_01172 ; rdf:type edam:operation_0300 . ?targetMotifMatch116 faldo:location ?targetMotifMatchRegionMatch117 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01172119 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP76216MF_01172110 . ?targetMotifMatchRegionMatch117 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01172118 . ?targetMotifMatchRegionMatchBeginMF_01172118 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01172111 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_01172119 edam:has_input signature:MF_01172 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP76216MF_01172108, 1, (STRLEN(?templateMotifCigarP76216MF_01172108) - STRLEN(REPLACE(?templateMotifCigarP76216MF_01172108, CONCAT('^(?:-*[^-]){', STR(((174 - ?templateMotifSequenceMatchBeginPositionP76216109) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1120) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP76216MF_01172110, 1, (STRLEN(?targetMotifMatchCigarP76216MF_01172110) - STRLEN(REPLACE(?targetMotifMatchCigarP76216MF_01172110, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1120), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP76216MF_01172110, 1, (STRLEN(?targetMotifMatchCigarP76216MF_01172110) - STRLEN(REPLACE(?targetMotifMatchCigarP76216MF_01172110, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1120), '}'), '')))), '[^-]', ''))) AS ?step2121) . BIND(((?step2121 + ?targetMotifMatchRegionMatchBeginPositionMF_01172111) - 1) AS ?thisPositionOn28) . BIND(?thisPositionOn28 AS ?thisPositionOn29) . BIND(?this AS ?pfs1t122) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn28))) AS ?pfsb26) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn29))) AS ?pfse27) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn28, 1) = 'E')) . BIND(URI(CONCAT(STR(?this), '#MF_01172a25')) AS ?annotation25) . BIND(?this AS ?pfs24) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch127 faldo:location ?templateMotifSequenceMatchRegionP76216128 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP76216130 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP76216MF_01172123 . ?templateMotifSequenceMatchRegionP76216128 faldo:begin ?templateMotifSequenceMatchBeginP76216129 . ?templateMotifSequenceMatchBeginP76216129 faldo:position ?templateMotifSequenceMatchBeginPositionP76216124 ; faldo:reference isoform:P76216-1 . ?templateMotifSequenceProfileAlignmentOperationP76216130 edam:has_input signature:MF_01172 ; rdf:type edam:operation_0300 . ?targetMotifMatch131 faldo:location ?targetMotifMatchRegionMatch132 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01172134 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP76216MF_01172125 . ?targetMotifMatchRegionMatch132 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01172133 . ?targetMotifMatchRegionMatchBeginMF_01172133 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01172126 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_01172134 edam:has_input signature:MF_01172 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP76216MF_01172123, 1, (STRLEN(?templateMotifCigarP76216MF_01172123) - STRLEN(REPLACE(?templateMotifCigarP76216MF_01172123, CONCAT('^(?:-*[^-]){', STR(((248 - ?templateMotifSequenceMatchBeginPositionP76216124) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1135) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP76216MF_01172125, 1, (STRLEN(?targetMotifMatchCigarP76216MF_01172125) - STRLEN(REPLACE(?targetMotifMatchCigarP76216MF_01172125, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1135), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP76216MF_01172125, 1, (STRLEN(?targetMotifMatchCigarP76216MF_01172125) - STRLEN(REPLACE(?targetMotifMatchCigarP76216MF_01172125, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1135), '}'), '')))), '[^-]', ''))) AS ?step2136) . BIND(((?step2136 + ?targetMotifMatchRegionMatchBeginPositionMF_01172126) - 1) AS ?thisPositionOn34) . BIND(?thisPositionOn34 AS ?thisPositionOn35) . BIND(?this AS ?pfs1t137) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn34))) AS ?pfsb32) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn35))) AS ?pfse33) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn34, 1) = 'H')) . BIND(URI(CONCAT(STR(?this), '#MF_01172a31')) AS ?annotation31) . BIND(?this AS ?pfs30) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch142 faldo:location ?templateMotifSequenceMatchRegionP76216143 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP76216145 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP76216MF_01172138 . ?templateMotifSequenceMatchRegionP76216143 faldo:begin ?templateMotifSequenceMatchBeginP76216144 . ?templateMotifSequenceMatchBeginP76216144 faldo:position ?templateMotifSequenceMatchBeginPositionP76216139 ; faldo:reference isoform:P76216-1 . ?templateMotifSequenceProfileAlignmentOperationP76216145 edam:has_input signature:MF_01172 ; rdf:type edam:operation_0300 . ?targetMotifMatch146 faldo:location ?targetMotifMatchRegionMatch147 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01172149 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP76216MF_01172140 . ?targetMotifMatchRegionMatch147 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01172148 . ?targetMotifMatchRegionMatchBeginMF_01172148 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01172141 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_01172149 edam:has_input signature:MF_01172 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP76216MF_01172138, 1, (STRLEN(?templateMotifCigarP76216MF_01172138) - STRLEN(REPLACE(?templateMotifCigarP76216MF_01172138, CONCAT('^(?:-*[^-]){', STR(((365 - ?templateMotifSequenceMatchBeginPositionP76216139) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1150) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP76216MF_01172140, 1, (STRLEN(?targetMotifMatchCigarP76216MF_01172140) - STRLEN(REPLACE(?targetMotifMatchCigarP76216MF_01172140, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1150), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP76216MF_01172140, 1, (STRLEN(?targetMotifMatchCigarP76216MF_01172140) - STRLEN(REPLACE(?targetMotifMatchCigarP76216MF_01172140, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1150), '}'), '')))), '[^-]', ''))) AS ?step2151) . BIND(((?step2151 + ?targetMotifMatchRegionMatchBeginPositionMF_01172141) - 1) AS ?thisPositionOn40) . BIND(?thisPositionOn40 AS ?thisPositionOn41) . BIND(?this AS ?pfs1t152) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn40))) AS ?pfsb38) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn41))) AS ?pfse39) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn40, 1) = 'C')) . BIND(URI(CONCAT(STR(?this), '#MF_01172a37')) AS ?annotation37) . BIND(?this AS ?pfs36) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch157 faldo:location ?templateMotifSequenceMatchRegionP76216158 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP76216160 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP76216MF_01172153 . ?templateMotifSequenceMatchRegionP76216158 faldo:begin ?templateMotifSequenceMatchBeginP76216159 . ?templateMotifSequenceMatchBeginP76216159 faldo:position ?templateMotifSequenceMatchBeginPositionP76216154 ; faldo:reference isoform:P76216-1 . ?templateMotifSequenceProfileAlignmentOperationP76216160 edam:has_input signature:MF_01172 ; rdf:type edam:operation_0300 . ?targetMotifMatch161 faldo:location ?targetMotifMatchRegionMatch162 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01172164 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP76216MF_01172155 . ?targetMotifMatchRegionMatch162 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01172163 . ?targetMotifMatchRegionMatchBeginMF_01172163 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01172156 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_01172164 edam:has_input signature:MF_01172 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP76216MF_01172153, 1, (STRLEN(?templateMotifCigarP76216MF_01172153) - STRLEN(REPLACE(?templateMotifCigarP76216MF_01172153, CONCAT('^(?:-*[^-]){', STR(((110 - ?templateMotifSequenceMatchBeginPositionP76216154) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1165) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP76216MF_01172155, 1, (STRLEN(?targetMotifMatchCigarP76216MF_01172155) - STRLEN(REPLACE(?targetMotifMatchCigarP76216MF_01172155, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1165), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP76216MF_01172155, 1, (STRLEN(?targetMotifMatchCigarP76216MF_01172155) - STRLEN(REPLACE(?targetMotifMatchCigarP76216MF_01172155, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1165), '}'), '')))), '[^-]', ''))) AS ?step2166) . BIND(((?step2166 + ?targetMotifMatchRegionMatchBeginPositionMF_01172156) - 1) AS ?thisPositionOn48) . BIND(?thisPositionOn48 AS ?thisPositionOn49) . BIND(?this AS ?pfs1t167) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn48))) AS ?pfsb44) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn49))) AS ?pfse45) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn48, 1) = 'N')) . BIND(URI(CONCAT(STR(?this), '#MF_01172a43')) AS ?annotation43) . BIND(?this AS ?pfs42) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch172 faldo:location ?templateMotifSequenceMatchRegionP76216173 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP76216175 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP76216MF_01172168 . ?templateMotifSequenceMatchRegionP76216173 faldo:begin ?templateMotifSequenceMatchBeginP76216174 . ?templateMotifSequenceMatchBeginP76216174 faldo:position ?templateMotifSequenceMatchBeginPositionP76216169 ; faldo:reference isoform:P76216-1 . ?templateMotifSequenceProfileAlignmentOperationP76216175 edam:has_input signature:MF_01172 ; rdf:type edam:operation_0300 . ?targetMotifMatch176 faldo:location ?targetMotifMatchRegionMatch177 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01172179 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP76216MF_01172170 . ?targetMotifMatchRegionMatch177 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01172178 . ?targetMotifMatchRegionMatchBeginMF_01172178 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01172171 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_01172179 edam:has_input signature:MF_01172 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP76216MF_01172168, 1, (STRLEN(?templateMotifCigarP76216MF_01172168) - STRLEN(REPLACE(?templateMotifCigarP76216MF_01172168, CONCAT('^(?:-*[^-]){', STR(((212 - ?templateMotifSequenceMatchBeginPositionP76216169) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1180) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP76216MF_01172170, 1, (STRLEN(?targetMotifMatchCigarP76216MF_01172170) - STRLEN(REPLACE(?targetMotifMatchCigarP76216MF_01172170, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1180), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP76216MF_01172170, 1, (STRLEN(?targetMotifMatchCigarP76216MF_01172170) - STRLEN(REPLACE(?targetMotifMatchCigarP76216MF_01172170, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1180), '}'), '')))), '[^-]', ''))) AS ?step2181) . BIND(((?step2181 + ?targetMotifMatchRegionMatchBeginPositionMF_01172171) - 1) AS ?thisPositionOn56) . BIND(?thisPositionOn56 AS ?thisPositionOn57) . BIND(?this AS ?pfs1t182) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn56))) AS ?pfsb52) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn57))) AS ?pfse53) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn56, 1) = 'R')) . BIND(URI(CONCAT(STR(?this), '#MF_01172a51')) AS ?annotation51) . BIND(?this AS ?pfs50) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch187 faldo:location ?templateMotifSequenceMatchRegionP76216188 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP76216190 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP76216MF_01172183 . ?templateMotifSequenceMatchRegionP76216188 faldo:begin ?templateMotifSequenceMatchBeginP76216189 . ?templateMotifSequenceMatchBeginP76216189 faldo:position ?templateMotifSequenceMatchBeginPositionP76216184 ; faldo:reference isoform:P76216-1 . ?templateMotifSequenceProfileAlignmentOperationP76216190 edam:has_input signature:MF_01172 ; rdf:type edam:operation_0300 . ?targetMotifMatch191 faldo:location ?targetMotifMatchRegionMatch192 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01172194 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP76216MF_01172185 . ?targetMotifMatchRegionMatch192 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01172193 . ?targetMotifMatchRegionMatchBeginMF_01172193 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01172186 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_01172194 edam:has_input signature:MF_01172 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP76216MF_01172183, 1, (STRLEN(?templateMotifCigarP76216MF_01172183) - STRLEN(REPLACE(?templateMotifCigarP76216MF_01172183, CONCAT('^(?:-*[^-]){', STR(((250 - ?templateMotifSequenceMatchBeginPositionP76216184) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1195) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP76216MF_01172185, 1, (STRLEN(?targetMotifMatchCigarP76216MF_01172185) - STRLEN(REPLACE(?targetMotifMatchCigarP76216MF_01172185, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1195), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP76216MF_01172185, 1, (STRLEN(?targetMotifMatchCigarP76216MF_01172185) - STRLEN(REPLACE(?targetMotifMatchCigarP76216MF_01172185, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1195), '}'), '')))), '[^-]', ''))) AS ?step2196) . BIND(((?step2196 + ?targetMotifMatchRegionMatchBeginPositionMF_01172186) - 1) AS ?thisPositionOn64) . BIND(?thisPositionOn64 AS ?thisPositionOn65) . BIND(?this AS ?pfs1t197) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn64))) AS ?pfsb60) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn65))) AS ?pfse61) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn64, 1) = 'D')) . BIND(URI(CONCAT(STR(?this), '#MF_01172a59')) AS ?annotation59) . BIND(?this AS ?pfs58) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch202 faldo:location ?templateMotifSequenceMatchRegionP76216203 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP76216205 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP76216MF_01172198 . ?templateMotifSequenceMatchRegionP76216203 faldo:begin ?templateMotifSequenceMatchBeginP76216204 . ?templateMotifSequenceMatchBeginP76216204 faldo:position ?templateMotifSequenceMatchBeginPositionP76216199 ; faldo:reference isoform:P76216-1 . ?templateMotifSequenceProfileAlignmentOperationP76216205 edam:has_input signature:MF_01172 ; rdf:type edam:operation_0300 . ?targetMotifMatch206 faldo:location ?targetMotifMatchRegionMatch207 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01172209 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP76216MF_01172200 . ?targetMotifMatchRegionMatch207 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01172208 . ?targetMotifMatchRegionMatchBeginMF_01172208 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01172201 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_01172209 edam:has_input signature:MF_01172 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP76216MF_01172198, 1, (STRLEN(?templateMotifCigarP76216MF_01172198) - STRLEN(REPLACE(?templateMotifCigarP76216MF_01172198, CONCAT('^(?:-*[^-]){', STR(((359 - ?templateMotifSequenceMatchBeginPositionP76216199) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1210) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP76216MF_01172200, 1, (STRLEN(?targetMotifMatchCigarP76216MF_01172200) - STRLEN(REPLACE(?targetMotifMatchCigarP76216MF_01172200, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1210), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP76216MF_01172200, 1, (STRLEN(?targetMotifMatchCigarP76216MF_01172200) - STRLEN(REPLACE(?targetMotifMatchCigarP76216MF_01172200, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1210), '}'), '')))), '[^-]', ''))) AS ?step2211) . BIND(((?step2211 + ?targetMotifMatchRegionMatchBeginPositionMF_01172201) - 1) AS ?thisPositionOn72) . BIND(?thisPositionOn72 AS ?thisPositionOn73) . BIND(?this AS ?pfs1t212) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn72))) AS ?pfsb68) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn73))) AS ?pfse69) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn72, 1) = 'N')) . BIND(URI(CONCAT(STR(?this), '#MF_01172a67')) AS ?annotation67) . BIND(?this AS ?pfs66) . } }