CONSTRUCT { _:423891 up:source unirule:MF_01209 . _:423892 up:source unirule:MF_01209 . _:423893 up:source unirule:MF_01209 . _:423894 up:source unirule:MF_01209 . _:423895 up:source unirule:MF_01209 . _:423896 up:source unirule:MF_01209 . _:423897 up:source unirule:MF_01209 . _:423898 up:source unirule:MF_01209 . _:423899 up:source unirule:MF_01209 . _:423900 up:source unirule:MF_01209 . _:423901 up:source unirule:MF_01209 . _:423902 up:source unirule:MF_01209 . _:423903 up:source unirule:MF_01209 . _:423904 up:source unirule:MF_01209 . _:423905 up:source unirule:MF_01209 . _:423906 up:source unirule:MF_01209 . _:423907 up:source unirule:MF_01209 . _:423908 up:source unirule:MF_01209 . _:423909 up:source unirule:MF_01209 . _:423910 up:source unirule:MF_01209 . _:423911 up:source unirule:MF_01209 . _:423912 up:source unirule:MF_01209 . _:423913 up:source unirule:MF_01209 . _:423914 up:source unirule:MF_01209 . _:423915 up:source unirule:MF_01209 . _:423916 up:source unirule:MF_01209 . _:423917 up:source unirule:MF_01209 . _:423918 up:source unirule:MF_01209 . _:423919 up:source unirule:MF_01209 . _:423920 up:source unirule:MF_01209 . _:423921 up:source unirule:MF_01209 . _:423922 up:source unirule:MF_01209 . _:423923 up:source unirule:MF_01209 . _:423924 up:source unirule:MF_01209 . ?this up:alternativeName ?name1 ; up:annotation ?annotation3 , ?annotation4 , ?annotation6 , ?annotation8 , ?annotation9 , ?annotation10 , ?annotation11 ; up:classifiedWith GO:0004088 , GO:0005524 , GO:0006526 , GO:0044205 , keyword:28 , keyword:315 , keyword:436 , keyword:547 , keyword:55 , keyword:665 , keyword:67 ; up:recommendedName ?name0 . ?name0 up:ecName '6.3.5.5' ; up:fullName 'Carbamoyl phosphate synthase small chain' ; rdf:type up:Structured_Name . ?name1 up:fullName 'Carbamoyl phosphate synthetase glutamine chain' ; rdf:type up:Structured_Name . ?gene2 skos:prefLabel 'carA' . ?annotation3 a up:Function_Annotation ; rdfs:comment 'Small subunit of the glutamine-dependent carbamoyl phosphate synthetase (CPSase). CPSase catalyzes the formation of carbamoyl phosphate from the ammonia moiety of glutamine, carbonate, and phosphate donated by ATP, constituting the first step of 2 biosynthetic pathways, one leading to arginine and/or urea and the other to pyrimidine nucleotides. The small subunit (glutamine amidotransferase) binds and cleaves glutamine to supply the large subunit with the substrate ammonia.' . ?annotation4 up:activity ?activity5 ; rdf:type up:Catalytic_Activity_Annotation . ?activity5 up:catalyticActivity <http://rdf.rhea-db.org/18633>; up:enzymeClass <http://purl.uniprot.org/enzyme/6.3.5.5>. ?annotation6 up:activity ?activity7 ; rdf:type up:Catalytic_Activity_Annotation . ?activity7 up:catalyticActivity <http://rdf.rhea-db.org/15889>. ?annotation8 a up:Pathway_Annotation ; rdfs:comment 'Amino-acid biosynthesis; L-arginine biosynthesis; carbamoyl phosphate from bicarbonate: step 1/1.' . ?annotation9 a up:Pathway_Annotation ; rdfs:comment 'Pyrimidine metabolism; UMP biosynthesis via de novo pathway; (S)-dihydroorotate from bicarbonate: step 1/3.' . ?annotation10 a up:Subunit_Annotation ; rdfs:comment 'Composed of two chains; the small (or glutamine) chain promotes the hydrolysis of glutamine to ammonia, which is used by the large (or ammonia) chain to synthesize carbamoyl phosphate. Tetramer of heterodimers (alpha,beta)4.' . ?annotation11 a up:Similarity_Annotation ; rdfs:comment 'Belongs to the CarA family.' . ?case12 up:classifiedWith GO:0009507 . ?pfs13 up:annotation ?annotation14 . ?annotation14 faldo:begin ?pfsb15 ; faldo:end ?pfse16 ; rdf:type up:Region_Annotation ; rdfs:comment 'CPSase' . ?pfsb15 faldo:position ?thisPositionOn17 ; rdf:type faldo:ExactPosition . ?pfse16 faldo:position ?thisPositionOn18 ; rdf:type faldo:ExactPosition . ?pfs19 up:annotation ?annotation20 . ?annotation20 faldo:begin ?pfsb21 ; faldo:end ?pfse22 ; rdf:type up:Active_Site_Annotation ; rdfs:comment 'Nucleophile' . ?pfsb21 faldo:position ?thisPositionOn23 ; rdf:type faldo:ExactPosition . ?pfse22 faldo:position ?thisPositionOn24 ; rdf:type faldo:ExactPosition . ?pfs25 up:annotation ?annotation26 . ?annotation26 faldo:begin ?pfsb27 ; faldo:end ?pfse28 ; rdf:type up:Active_Site_Annotation . ?pfsb27 faldo:position ?thisPositionOn29 ; rdf:type faldo:ExactPosition . ?pfse28 faldo:position ?thisPositionOn30 ; rdf:type faldo:ExactPosition . ?pfs31 up:annotation ?annotation32 . ?annotation32 faldo:begin ?pfsb33 ; faldo:end ?pfse34 ; rdf:type up:Active_Site_Annotation . ?pfsb33 faldo:position ?thisPositionOn35 ; rdf:type faldo:ExactPosition . ?pfse34 faldo:position ?thisPositionOn36 ; rdf:type faldo:ExactPosition . ?pfs37 up:annotation ?annotation38 . ?annotation38 faldo:begin ?pfsb39 ; faldo:end ?pfse40 ; up:ligand ?ligand41 ; rdf:type up:Binding_Site_Annotation . ?pfsb39 faldo:position ?thisPositionOn42 ; rdf:type faldo:ExactPosition . ?pfse40 faldo:position ?thisPositionOn43 ; rdf:type faldo:ExactPosition . ?ligand41 rdfs:subClassOf chebi:58359 . ?pfs44 up:annotation ?annotation45 . ?annotation45 faldo:begin ?pfsb46 ; faldo:end ?pfse47 ; up:ligand ?ligand48 ; rdf:type up:Binding_Site_Annotation . ?pfsb46 faldo:position ?thisPositionOn49 ; rdf:type faldo:ExactPosition . ?pfse47 faldo:position ?thisPositionOn50 ; rdf:type faldo:ExactPosition . ?ligand48 rdfs:subClassOf chebi:58359 . ?pfs51 up:annotation ?annotation52 . ?annotation52 faldo:begin ?pfsb53 ; faldo:end ?pfse54 ; up:ligand ?ligand55 ; rdf:type up:Binding_Site_Annotation . ?pfsb53 faldo:position ?thisPositionOn56 ; rdf:type faldo:ExactPosition . ?pfse54 faldo:position ?thisPositionOn57 ; rdf:type faldo:ExactPosition . ?ligand55 rdfs:subClassOf chebi:58359 . ?pfs58 up:annotation ?annotation59 . ?annotation59 faldo:begin ?pfsb60 ; faldo:end ?pfse61 ; up:ligand ?ligand62 ; rdf:type up:Binding_Site_Annotation . ?pfsb60 faldo:position ?thisPositionOn63 ; rdf:type faldo:ExactPosition . ?pfse61 faldo:position ?thisPositionOn64 ; rdf:type faldo:ExactPosition . ?ligand62 rdfs:subClassOf chebi:58359 . ?pfs65 up:annotation ?annotation66 . ?annotation66 faldo:begin ?pfsb67 ; faldo:end ?pfse68 ; up:ligand ?ligand69 ; rdf:type up:Binding_Site_Annotation . ?pfsb67 faldo:position ?thisPositionOn70 ; rdf:type faldo:ExactPosition . ?pfse68 faldo:position ?thisPositionOn71 ; rdf:type faldo:ExactPosition . ?ligand69 rdfs:subClassOf chebi:58359 . ?pfs72 up:annotation ?annotation73 . ?annotation73 faldo:begin ?pfsb74 ; faldo:end ?pfse75 ; up:ligand ?ligand76 ; rdf:type up:Binding_Site_Annotation . ?pfsb74 faldo:position ?thisPositionOn77 ; rdf:type faldo:ExactPosition . ?pfse75 faldo:position ?thisPositionOn78 ; rdf:type faldo:ExactPosition . ?ligand76 rdfs:subClassOf chebi:58359 . ?pfs79 up:annotation ?annotation80 . ?annotation80 faldo:begin ?pfsb81 ; faldo:end ?pfse82 ; up:ligand ?ligand83 ; rdf:type up:Binding_Site_Annotation . ?pfsb81 faldo:position ?thisPositionOn84 ; rdf:type faldo:ExactPosition . ?pfse82 faldo:position ?thisPositionOn85 ; rdf:type faldo:ExactPosition . ?ligand83 rdfs:subClassOf chebi:58359 . ?pfs86 up:annotation ?annotation87 . ?annotation87 faldo:begin ?pfsb88 ; faldo:end ?pfse89 ; up:ligand ?ligand90 ; rdf:type up:Binding_Site_Annotation . ?pfsb88 faldo:position ?thisPositionOn91 ; rdf:type faldo:ExactPosition . ?pfse89 faldo:position ?thisPositionOn92 ; rdf:type faldo:ExactPosition . ?ligand90 rdfs:subClassOf chebi:58359 . _:423925 a rdf:Statement ; up:attribution _:423891 ; rdf:subject ?this ; rdf:predicate up:recommendedName ; rdf:object ?name0 . _:423926 a rdf:Statement ; up:attribution _:423892 ; rdf:subject ?this ; rdf:predicate up:alternativeName ; rdf:object ?name1 . _:423927 a rdf:Statement ; up:attribution _:423893 ; rdf:subject ?gene2 ; rdf:predicate up:encodedBy ; rdf:object ?gene2 . _:423928 a rdf:Statement ; up:attribution _:423894 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation3 . _:423929 a rdf:Statement ; up:attribution _:423895 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation4 . _:423930 a rdf:Statement ; up:attribution _:423896 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation6 . _:423931 a rdf:Statement ; up:attribution _:423897 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation8 . _:423932 a rdf:Statement ; up:attribution _:423898 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation9 . _:423933 a rdf:Statement ; up:attribution _:423899 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation10 . _:423934 a rdf:Statement ; up:attribution _:423900 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation11 . _:423935 a rdf:Statement ; up:attribution _:423901 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:28 . _:423936 a rdf:Statement ; up:attribution _:423902 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:55 . _:423937 a rdf:Statement ; up:attribution _:423903 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:67 . _:423938 a rdf:Statement ; up:attribution _:423904 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:315 . _:423939 a rdf:Statement ; up:attribution _:423905 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:436 . _:423940 a rdf:Statement ; up:attribution _:423906 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:547 . _:423941 a rdf:Statement ; up:attribution _:423907 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:665 . _:423942 a rdf:Statement ; up:attribution _:423908 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object GO:0005524 . _:423943 a rdf:Statement ; up:attribution _:423909 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object GO:0004088 . _:423944 a rdf:Statement ; up:attribution _:423910 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object GO:0006526 . _:423945 a rdf:Statement ; up:attribution _:423911 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object GO:0044205 . _:423946 a rdf:Statement ; up:attribution _:423912 ; rdf:subject ?case12 ; rdf:predicate up:classifiedWith ; rdf:object GO:0009507 . _:423947 a rdf:Statement ; up:source unirule:MF_01209 ; rdf:subject ?pfs13 ; rdf:predicate up:annotation ; rdf:object ?annotation14 . _:423948 a rdf:Statement ; up:attribution _:423913 ; rdf:subject ?pfs13 ; rdf:predicate up:annotation ; rdf:object ?annotation14 . _:423949 a rdf:Statement ; up:source unirule:MF_01209 ; rdf:subject ?pfs19 ; rdf:predicate up:annotation ; rdf:object ?annotation20 . _:423950 a rdf:Statement ; up:attribution _:423914 ; rdf:subject ?pfs19 ; rdf:predicate up:annotation ; rdf:object ?annotation20 . _:423951 a rdf:Statement ; up:source unirule:MF_01209 ; rdf:subject ?pfs25 ; rdf:predicate up:annotation ; rdf:object ?annotation26 . _:423952 a rdf:Statement ; up:attribution _:423915 ; rdf:subject ?pfs25 ; rdf:predicate up:annotation ; rdf:object ?annotation26 . _:423953 a rdf:Statement ; up:source unirule:MF_01209 ; rdf:subject ?pfs31 ; rdf:predicate up:annotation ; rdf:object ?annotation32 . _:423954 a rdf:Statement ; up:attribution _:423916 ; rdf:subject ?pfs31 ; rdf:predicate up:annotation ; rdf:object ?annotation32 . _:423955 a rdf:Statement ; up:source unirule:MF_01209 ; rdf:subject ?pfs37 ; rdf:predicate up:annotation ; rdf:object ?annotation38 . _:423956 a rdf:Statement ; up:attribution _:423917 ; rdf:subject ?pfs37 ; rdf:predicate up:annotation ; rdf:object ?annotation38 . _:423957 a rdf:Statement ; up:source unirule:MF_01209 ; rdf:subject ?pfs44 ; rdf:predicate up:annotation ; rdf:object ?annotation45 . _:423958 a rdf:Statement ; up:attribution _:423918 ; rdf:subject ?pfs44 ; rdf:predicate up:annotation ; rdf:object ?annotation45 . _:423959 a rdf:Statement ; up:source unirule:MF_01209 ; rdf:subject ?pfs51 ; rdf:predicate up:annotation ; rdf:object ?annotation52 . _:423960 a rdf:Statement ; up:attribution _:423919 ; rdf:subject ?pfs51 ; rdf:predicate up:annotation ; rdf:object ?annotation52 . _:423961 a rdf:Statement ; up:source unirule:MF_01209 ; rdf:subject ?pfs58 ; rdf:predicate up:annotation ; rdf:object ?annotation59 . _:423962 a rdf:Statement ; up:attribution _:423920 ; rdf:subject ?pfs58 ; rdf:predicate up:annotation ; rdf:object ?annotation59 . _:423963 a rdf:Statement ; up:source unirule:MF_01209 ; rdf:subject ?pfs65 ; rdf:predicate up:annotation ; rdf:object ?annotation66 . _:423964 a rdf:Statement ; up:attribution _:423921 ; rdf:subject ?pfs65 ; rdf:predicate up:annotation ; rdf:object ?annotation66 . _:423965 a rdf:Statement ; up:source unirule:MF_01209 ; rdf:subject ?pfs72 ; rdf:predicate up:annotation ; rdf:object ?annotation73 . _:423966 a rdf:Statement ; up:attribution _:423922 ; rdf:subject ?pfs72 ; rdf:predicate up:annotation ; rdf:object ?annotation73 . _:423967 a rdf:Statement ; up:source unirule:MF_01209 ; rdf:subject ?pfs79 ; rdf:predicate up:annotation ; rdf:object ?annotation80 . _:423968 a rdf:Statement ; up:attribution _:423923 ; rdf:subject ?pfs79 ; rdf:predicate up:annotation ; rdf:object ?annotation80 . _:423969 a rdf:Statement ; up:source unirule:MF_01209 ; rdf:subject ?pfs86 ; rdf:predicate up:annotation ; rdf:object ?annotation87 . _:423970 a rdf:Statement ; up:attribution _:423924 ; rdf:subject ?pfs86 ; rdf:predicate up:annotation ; rdf:object ?annotation87 . } WHERE { #baseURI: http://purl.uniprot.org/unirule/MF_01209 #Rule MF_01209 Created by:? on:2005-02-28 Modified by:Catherine Rivoire on:2024-11-05 { VALUES ?supertaxon93 {taxon:2 taxon:2157} ?this up:organism ?thisOrganism ; rdfs:seeAlso signature:MF_01209 . ?thisOrganism rdfs:subClassOf+ ?supertaxon93 . } UNION { ?this rdfs:seeAlso signature:MF_01209 . { ?this up:encodedIn up:Plastid . } UNION { ?this up:encodedIn up:Chloroplast . } UNION { ?this up:encodedIn up:Cyanelle . } UNION { ?this up:encodedIn up:Apicoplast . } UNION { ?this up:encodedIn up:Organellar_chromatophore . } UNION { ?this up:encodedIn up:Non-photosynthetic_plastid . } } BIND(URI(CONCAT(STR(?this), '#MF_01209a0')) AS ?name0) . BIND(URI(CONCAT(STR(?this), '#MF_01209a1')) AS ?name1) . BIND(URI(CONCAT(STR(?this), '#MF_01209a3')) AS ?annotation3) . BIND(URI(CONCAT(STR(?this), '#MF_01209a4')) AS ?annotation4) . BIND(URI(CONCAT(STR(?this), '#MF_01209a6')) AS ?annotation6) . BIND(URI(CONCAT(STR(?this), '#MF_01209a8')) AS ?annotation8) . BIND(URI(CONCAT(STR(?this), '#MF_01209a9')) AS ?annotation9) . BIND(URI(CONCAT(STR(?this), '#MF_01209a10')) AS ?annotation10) . BIND(URI(CONCAT(STR(?this), '#MF_01209a11')) AS ?annotation11) . OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch98 faldo:location ?templateMotifSequenceMatchRegionP0A6F199 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0A6F1101 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP0A6F1MF_0120994 . ?templateMotifSequenceMatchRegionP0A6F199 faldo:begin ?templateMotifSequenceMatchBeginP0A6F1100 . ?templateMotifSequenceMatchBeginP0A6F1100 faldo:position ?templateMotifSequenceMatchBeginPositionP0A6F195 ; faldo:reference isoform:P0A6F1-1 . ?templateMotifSequenceProfileAlignmentOperationP0A6F1101 edam:has_input signature:MF_01209 ; rdf:type edam:operation_0300 . ?targetMotifMatch102 faldo:location ?targetMotifMatchRegionMatch103 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01209105 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP0A6F1MF_0120996 . ?targetMotifMatchRegionMatch103 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01209104 . ?targetMotifMatchRegionMatchBeginMF_01209104 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0120997 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_01209105 edam:has_input signature:MF_01209 ; rdf:type edam:operation_0300 . BIND(1 AS ?thisPositionOn17) . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0A6F1MF_0120994, 1, (STRLEN(?templateMotifCigarP0A6F1MF_0120994) - STRLEN(REPLACE(?templateMotifCigarP0A6F1MF_0120994, CONCAT('^(?:-*[^-]){', STR(((189 - ?templateMotifSequenceMatchBeginPositionP0A6F195) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1106) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0A6F1MF_0120996, 1, (STRLEN(?targetMotifMatchCigarP0A6F1MF_0120996) - STRLEN(REPLACE(?targetMotifMatchCigarP0A6F1MF_0120996, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1106), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0A6F1MF_0120996, 1, (STRLEN(?targetMotifMatchCigarP0A6F1MF_0120996) - STRLEN(REPLACE(?targetMotifMatchCigarP0A6F1MF_0120996, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1106), '}'), '')))), '[^-]', ''))) AS ?step2107) . BIND(((?step2107 + ?targetMotifMatchRegionMatchBeginPositionMF_0120997) - 1) AS ?thisPositionOn18) . BIND(?this AS ?pfs1t108) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn17))) AS ?pfsb15) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn18))) AS ?pfse16) . FILTER ((BOUND(?thisPositionOn17) && BOUND(?thisPositionOn18))) . BIND(URI(CONCAT(STR(?this), '#MF_01209a14')) AS ?annotation14) . BIND(?this AS ?pfs13) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch113 faldo:location ?templateMotifSequenceMatchRegionP0A6F1114 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0A6F1116 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP0A6F1MF_01209109 . ?templateMotifSequenceMatchRegionP0A6F1114 faldo:begin ?templateMotifSequenceMatchBeginP0A6F1115 . ?templateMotifSequenceMatchBeginP0A6F1115 faldo:position ?templateMotifSequenceMatchBeginPositionP0A6F1110 ; faldo:reference isoform:P0A6F1-1 . ?templateMotifSequenceProfileAlignmentOperationP0A6F1116 edam:has_input signature:MF_01209 ; rdf:type edam:operation_0300 . ?targetMotifMatch117 faldo:location ?targetMotifMatchRegionMatch118 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01209120 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP0A6F1MF_01209111 . ?targetMotifMatchRegionMatch118 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01209119 . ?targetMotifMatchRegionMatchBeginMF_01209119 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01209112 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_01209120 edam:has_input signature:MF_01209 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0A6F1MF_01209109, 1, (STRLEN(?templateMotifCigarP0A6F1MF_01209109) - STRLEN(REPLACE(?templateMotifCigarP0A6F1MF_01209109, CONCAT('^(?:-*[^-]){', STR(((269 - ?templateMotifSequenceMatchBeginPositionP0A6F1110) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1121) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0A6F1MF_01209111, 1, (STRLEN(?targetMotifMatchCigarP0A6F1MF_01209111) - STRLEN(REPLACE(?targetMotifMatchCigarP0A6F1MF_01209111, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1121), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0A6F1MF_01209111, 1, (STRLEN(?targetMotifMatchCigarP0A6F1MF_01209111) - STRLEN(REPLACE(?targetMotifMatchCigarP0A6F1MF_01209111, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1121), '}'), '')))), '[^-]', ''))) AS ?step2122) . BIND(((?step2122 + ?targetMotifMatchRegionMatchBeginPositionMF_01209112) - 1) AS ?thisPositionOn23) . BIND(?thisPositionOn23 AS ?thisPositionOn24) . BIND(?this AS ?pfs1t123) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn23))) AS ?pfsb21) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn24))) AS ?pfse22) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn23, 1) = 'C')) . BIND(URI(CONCAT(STR(?this), '#MF_01209a20')) AS ?annotation20) . BIND(?this AS ?pfs19) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch128 faldo:location ?templateMotifSequenceMatchRegionP0A6F1129 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0A6F1131 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP0A6F1MF_01209124 . ?templateMotifSequenceMatchRegionP0A6F1129 faldo:begin ?templateMotifSequenceMatchBeginP0A6F1130 . ?templateMotifSequenceMatchBeginP0A6F1130 faldo:position ?templateMotifSequenceMatchBeginPositionP0A6F1125 ; faldo:reference isoform:P0A6F1-1 . ?templateMotifSequenceProfileAlignmentOperationP0A6F1131 edam:has_input signature:MF_01209 ; rdf:type edam:operation_0300 . ?targetMotifMatch132 faldo:location ?targetMotifMatchRegionMatch133 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01209135 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP0A6F1MF_01209126 . ?targetMotifMatchRegionMatch133 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01209134 . ?targetMotifMatchRegionMatchBeginMF_01209134 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01209127 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_01209135 edam:has_input signature:MF_01209 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0A6F1MF_01209124, 1, (STRLEN(?templateMotifCigarP0A6F1MF_01209124) - STRLEN(REPLACE(?templateMotifCigarP0A6F1MF_01209124, CONCAT('^(?:-*[^-]){', STR(((353 - ?templateMotifSequenceMatchBeginPositionP0A6F1125) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1136) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0A6F1MF_01209126, 1, (STRLEN(?targetMotifMatchCigarP0A6F1MF_01209126) - STRLEN(REPLACE(?targetMotifMatchCigarP0A6F1MF_01209126, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1136), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0A6F1MF_01209126, 1, (STRLEN(?targetMotifMatchCigarP0A6F1MF_01209126) - STRLEN(REPLACE(?targetMotifMatchCigarP0A6F1MF_01209126, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1136), '}'), '')))), '[^-]', ''))) AS ?step2137) . BIND(((?step2137 + ?targetMotifMatchRegionMatchBeginPositionMF_01209127) - 1) AS ?thisPositionOn29) . BIND(?thisPositionOn29 AS ?thisPositionOn30) . BIND(?this AS ?pfs1t138) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn29))) AS ?pfsb27) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn30))) AS ?pfse28) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn29, 1) = 'H')) . BIND(URI(CONCAT(STR(?this), '#MF_01209a26')) AS ?annotation26) . BIND(?this AS ?pfs25) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch143 faldo:location ?templateMotifSequenceMatchRegionP0A6F1144 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0A6F1146 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP0A6F1MF_01209139 . ?templateMotifSequenceMatchRegionP0A6F1144 faldo:begin ?templateMotifSequenceMatchBeginP0A6F1145 . ?templateMotifSequenceMatchBeginP0A6F1145 faldo:position ?templateMotifSequenceMatchBeginPositionP0A6F1140 ; faldo:reference isoform:P0A6F1-1 . ?templateMotifSequenceProfileAlignmentOperationP0A6F1146 edam:has_input signature:MF_01209 ; rdf:type edam:operation_0300 . ?targetMotifMatch147 faldo:location ?targetMotifMatchRegionMatch148 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01209150 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP0A6F1MF_01209141 . ?targetMotifMatchRegionMatch148 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01209149 . ?targetMotifMatchRegionMatchBeginMF_01209149 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01209142 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_01209150 edam:has_input signature:MF_01209 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0A6F1MF_01209139, 1, (STRLEN(?templateMotifCigarP0A6F1MF_01209139) - STRLEN(REPLACE(?templateMotifCigarP0A6F1MF_01209139, CONCAT('^(?:-*[^-]){', STR(((355 - ?templateMotifSequenceMatchBeginPositionP0A6F1140) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1151) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0A6F1MF_01209141, 1, (STRLEN(?targetMotifMatchCigarP0A6F1MF_01209141) - STRLEN(REPLACE(?targetMotifMatchCigarP0A6F1MF_01209141, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1151), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0A6F1MF_01209141, 1, (STRLEN(?targetMotifMatchCigarP0A6F1MF_01209141) - STRLEN(REPLACE(?targetMotifMatchCigarP0A6F1MF_01209141, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1151), '}'), '')))), '[^-]', ''))) AS ?step2152) . BIND(((?step2152 + ?targetMotifMatchRegionMatchBeginPositionMF_01209142) - 1) AS ?thisPositionOn35) . BIND(?thisPositionOn35 AS ?thisPositionOn36) . BIND(?this AS ?pfs1t153) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn35))) AS ?pfsb33) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn36))) AS ?pfse34) . FILTER (REGEX('[ED]', SUBSTR(?thisSequenceValue, ?thisPositionOn35, 1))) . BIND(URI(CONCAT(STR(?this), '#MF_01209a32')) AS ?annotation32) . BIND(?this AS ?pfs31) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch158 faldo:location ?templateMotifSequenceMatchRegionP0A6F1159 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0A6F1161 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP0A6F1MF_01209154 . ?templateMotifSequenceMatchRegionP0A6F1159 faldo:begin ?templateMotifSequenceMatchBeginP0A6F1160 . ?templateMotifSequenceMatchBeginP0A6F1160 faldo:position ?templateMotifSequenceMatchBeginPositionP0A6F1155 ; faldo:reference isoform:P0A6F1-1 . ?templateMotifSequenceProfileAlignmentOperationP0A6F1161 edam:has_input signature:MF_01209 ; rdf:type edam:operation_0300 . ?targetMotifMatch162 faldo:location ?targetMotifMatchRegionMatch163 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01209165 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP0A6F1MF_01209156 . ?targetMotifMatchRegionMatch163 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01209164 . ?targetMotifMatchRegionMatchBeginMF_01209164 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01209157 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_01209165 edam:has_input signature:MF_01209 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0A6F1MF_01209154, 1, (STRLEN(?templateMotifCigarP0A6F1MF_01209154) - STRLEN(REPLACE(?templateMotifCigarP0A6F1MF_01209154, CONCAT('^(?:-*[^-]){', STR(((47 - ?templateMotifSequenceMatchBeginPositionP0A6F1155) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1166) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0A6F1MF_01209156, 1, (STRLEN(?targetMotifMatchCigarP0A6F1MF_01209156) - STRLEN(REPLACE(?targetMotifMatchCigarP0A6F1MF_01209156, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1166), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0A6F1MF_01209156, 1, (STRLEN(?targetMotifMatchCigarP0A6F1MF_01209156) - STRLEN(REPLACE(?targetMotifMatchCigarP0A6F1MF_01209156, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1166), '}'), '')))), '[^-]', ''))) AS ?step2167) . BIND(((?step2167 + ?targetMotifMatchRegionMatchBeginPositionMF_01209157) - 1) AS ?thisPositionOn42) . BIND(?thisPositionOn42 AS ?thisPositionOn43) . BIND(?this AS ?pfs1t168) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn42))) AS ?pfsb39) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn43))) AS ?pfse40) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn42, 1) = 'S')) . BIND(URI(CONCAT(STR(?this), '#MF_01209a38')) AS ?annotation38) . BIND(?this AS ?pfs37) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch173 faldo:location ?templateMotifSequenceMatchRegionP0A6F1174 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0A6F1176 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP0A6F1MF_01209169 . ?templateMotifSequenceMatchRegionP0A6F1174 faldo:begin ?templateMotifSequenceMatchBeginP0A6F1175 . ?templateMotifSequenceMatchBeginP0A6F1175 faldo:position ?templateMotifSequenceMatchBeginPositionP0A6F1170 ; faldo:reference isoform:P0A6F1-1 . ?templateMotifSequenceProfileAlignmentOperationP0A6F1176 edam:has_input signature:MF_01209 ; rdf:type edam:operation_0300 . ?targetMotifMatch177 faldo:location ?targetMotifMatchRegionMatch178 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01209180 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP0A6F1MF_01209171 . ?targetMotifMatchRegionMatch178 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01209179 . ?targetMotifMatchRegionMatchBeginMF_01209179 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01209172 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_01209180 edam:has_input signature:MF_01209 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0A6F1MF_01209169, 1, (STRLEN(?templateMotifCigarP0A6F1MF_01209169) - STRLEN(REPLACE(?templateMotifCigarP0A6F1MF_01209169, CONCAT('^(?:-*[^-]){', STR(((241 - ?templateMotifSequenceMatchBeginPositionP0A6F1170) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1181) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0A6F1MF_01209171, 1, (STRLEN(?targetMotifMatchCigarP0A6F1MF_01209171) - STRLEN(REPLACE(?targetMotifMatchCigarP0A6F1MF_01209171, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1181), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0A6F1MF_01209171, 1, (STRLEN(?targetMotifMatchCigarP0A6F1MF_01209171) - STRLEN(REPLACE(?targetMotifMatchCigarP0A6F1MF_01209171, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1181), '}'), '')))), '[^-]', ''))) AS ?step2182) . BIND(((?step2182 + ?targetMotifMatchRegionMatchBeginPositionMF_01209172) - 1) AS ?thisPositionOn49) . BIND(?thisPositionOn49 AS ?thisPositionOn50) . BIND(?this AS ?pfs1t183) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn49))) AS ?pfsb46) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn50))) AS ?pfse47) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn49, 1) = 'G')) . BIND(URI(CONCAT(STR(?this), '#MF_01209a45')) AS ?annotation45) . BIND(?this AS ?pfs44) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch188 faldo:location ?templateMotifSequenceMatchRegionP0A6F1189 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0A6F1191 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP0A6F1MF_01209184 . ?templateMotifSequenceMatchRegionP0A6F1189 faldo:begin ?templateMotifSequenceMatchBeginP0A6F1190 . ?templateMotifSequenceMatchBeginP0A6F1190 faldo:position ?templateMotifSequenceMatchBeginPositionP0A6F1185 ; faldo:reference isoform:P0A6F1-1 . ?templateMotifSequenceProfileAlignmentOperationP0A6F1191 edam:has_input signature:MF_01209 ; rdf:type edam:operation_0300 . ?targetMotifMatch192 faldo:location ?targetMotifMatchRegionMatch193 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01209195 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP0A6F1MF_01209186 . ?targetMotifMatchRegionMatch193 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01209194 . ?targetMotifMatchRegionMatchBeginMF_01209194 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01209187 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_01209195 edam:has_input signature:MF_01209 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0A6F1MF_01209184, 1, (STRLEN(?templateMotifCigarP0A6F1MF_01209184) - STRLEN(REPLACE(?templateMotifCigarP0A6F1MF_01209184, CONCAT('^(?:-*[^-]){', STR(((243 - ?templateMotifSequenceMatchBeginPositionP0A6F1185) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1196) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0A6F1MF_01209186, 1, (STRLEN(?targetMotifMatchCigarP0A6F1MF_01209186) - STRLEN(REPLACE(?targetMotifMatchCigarP0A6F1MF_01209186, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1196), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0A6F1MF_01209186, 1, (STRLEN(?targetMotifMatchCigarP0A6F1MF_01209186) - STRLEN(REPLACE(?targetMotifMatchCigarP0A6F1MF_01209186, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1196), '}'), '')))), '[^-]', ''))) AS ?step2197) . BIND(((?step2197 + ?targetMotifMatchRegionMatchBeginPositionMF_01209187) - 1) AS ?thisPositionOn56) . BIND(?thisPositionOn56 AS ?thisPositionOn57) . BIND(?this AS ?pfs1t198) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn56))) AS ?pfsb53) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn57))) AS ?pfse54) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn56, 1) = 'G')) . BIND(URI(CONCAT(STR(?this), '#MF_01209a52')) AS ?annotation52) . BIND(?this AS ?pfs51) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch203 faldo:location ?templateMotifSequenceMatchRegionP0A6F1204 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0A6F1206 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP0A6F1MF_01209199 . ?templateMotifSequenceMatchRegionP0A6F1204 faldo:begin ?templateMotifSequenceMatchBeginP0A6F1205 . ?templateMotifSequenceMatchBeginP0A6F1205 faldo:position ?templateMotifSequenceMatchBeginPositionP0A6F1200 ; faldo:reference isoform:P0A6F1-1 . ?templateMotifSequenceProfileAlignmentOperationP0A6F1206 edam:has_input signature:MF_01209 ; rdf:type edam:operation_0300 . ?targetMotifMatch207 faldo:location ?targetMotifMatchRegionMatch208 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01209210 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP0A6F1MF_01209201 . ?targetMotifMatchRegionMatch208 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01209209 . ?targetMotifMatchRegionMatchBeginMF_01209209 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01209202 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_01209210 edam:has_input signature:MF_01209 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0A6F1MF_01209199, 1, (STRLEN(?templateMotifCigarP0A6F1MF_01209199) - STRLEN(REPLACE(?templateMotifCigarP0A6F1MF_01209199, CONCAT('^(?:-*[^-]){', STR(((270 - ?templateMotifSequenceMatchBeginPositionP0A6F1200) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1211) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0A6F1MF_01209201, 1, (STRLEN(?targetMotifMatchCigarP0A6F1MF_01209201) - STRLEN(REPLACE(?targetMotifMatchCigarP0A6F1MF_01209201, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1211), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0A6F1MF_01209201, 1, (STRLEN(?targetMotifMatchCigarP0A6F1MF_01209201) - STRLEN(REPLACE(?targetMotifMatchCigarP0A6F1MF_01209201, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1211), '}'), '')))), '[^-]', ''))) AS ?step2212) . BIND(((?step2212 + ?targetMotifMatchRegionMatchBeginPositionMF_01209202) - 1) AS ?thisPositionOn63) . BIND(?thisPositionOn63 AS ?thisPositionOn64) . BIND(?this AS ?pfs1t213) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn63))) AS ?pfsb60) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn64))) AS ?pfse61) . FILTER (REGEX('[LFM]', SUBSTR(?thisSequenceValue, ?thisPositionOn63, 1))) . BIND(URI(CONCAT(STR(?this), '#MF_01209a59')) AS ?annotation59) . BIND(?this AS ?pfs58) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch218 faldo:location ?templateMotifSequenceMatchRegionP0A6F1219 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0A6F1221 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP0A6F1MF_01209214 . ?templateMotifSequenceMatchRegionP0A6F1219 faldo:begin ?templateMotifSequenceMatchBeginP0A6F1220 . ?templateMotifSequenceMatchBeginP0A6F1220 faldo:position ?templateMotifSequenceMatchBeginPositionP0A6F1215 ; faldo:reference isoform:P0A6F1-1 . ?templateMotifSequenceProfileAlignmentOperationP0A6F1221 edam:has_input signature:MF_01209 ; rdf:type edam:operation_0300 . ?targetMotifMatch222 faldo:location ?targetMotifMatchRegionMatch223 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01209225 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP0A6F1MF_01209216 . ?targetMotifMatchRegionMatch223 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01209224 . ?targetMotifMatchRegionMatchBeginMF_01209224 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01209217 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_01209225 edam:has_input signature:MF_01209 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0A6F1MF_01209214, 1, (STRLEN(?templateMotifCigarP0A6F1MF_01209214) - STRLEN(REPLACE(?templateMotifCigarP0A6F1MF_01209214, CONCAT('^(?:-*[^-]){', STR(((273 - ?templateMotifSequenceMatchBeginPositionP0A6F1215) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1226) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0A6F1MF_01209216, 1, (STRLEN(?targetMotifMatchCigarP0A6F1MF_01209216) - STRLEN(REPLACE(?targetMotifMatchCigarP0A6F1MF_01209216, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1226), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0A6F1MF_01209216, 1, (STRLEN(?targetMotifMatchCigarP0A6F1MF_01209216) - STRLEN(REPLACE(?targetMotifMatchCigarP0A6F1MF_01209216, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1226), '}'), '')))), '[^-]', ''))) AS ?step2227) . BIND(((?step2227 + ?targetMotifMatchRegionMatchBeginPositionMF_01209217) - 1) AS ?thisPositionOn70) . BIND(?thisPositionOn70 AS ?thisPositionOn71) . BIND(?this AS ?pfs1t228) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn70))) AS ?pfsb67) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn71))) AS ?pfse68) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn70, 1) = 'Q')) . BIND(URI(CONCAT(STR(?this), '#MF_01209a66')) AS ?annotation66) . BIND(?this AS ?pfs65) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch233 faldo:location ?templateMotifSequenceMatchRegionP0A6F1234 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0A6F1236 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP0A6F1MF_01209229 . ?templateMotifSequenceMatchRegionP0A6F1234 faldo:begin ?templateMotifSequenceMatchBeginP0A6F1235 . ?templateMotifSequenceMatchBeginP0A6F1235 faldo:position ?templateMotifSequenceMatchBeginPositionP0A6F1230 ; faldo:reference isoform:P0A6F1-1 . ?templateMotifSequenceProfileAlignmentOperationP0A6F1236 edam:has_input signature:MF_01209 ; rdf:type edam:operation_0300 . ?targetMotifMatch237 faldo:location ?targetMotifMatchRegionMatch238 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01209240 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP0A6F1MF_01209231 . ?targetMotifMatchRegionMatch238 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01209239 . ?targetMotifMatchRegionMatchBeginMF_01209239 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01209232 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_01209240 edam:has_input signature:MF_01209 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0A6F1MF_01209229, 1, (STRLEN(?templateMotifCigarP0A6F1MF_01209229) - STRLEN(REPLACE(?templateMotifCigarP0A6F1MF_01209229, CONCAT('^(?:-*[^-]){', STR(((311 - ?templateMotifSequenceMatchBeginPositionP0A6F1230) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1241) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0A6F1MF_01209231, 1, (STRLEN(?targetMotifMatchCigarP0A6F1MF_01209231) - STRLEN(REPLACE(?targetMotifMatchCigarP0A6F1MF_01209231, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1241), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0A6F1MF_01209231, 1, (STRLEN(?targetMotifMatchCigarP0A6F1MF_01209231) - STRLEN(REPLACE(?targetMotifMatchCigarP0A6F1MF_01209231, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1241), '}'), '')))), '[^-]', ''))) AS ?step2242) . BIND(((?step2242 + ?targetMotifMatchRegionMatchBeginPositionMF_01209232) - 1) AS ?thisPositionOn77) . BIND(?thisPositionOn77 AS ?thisPositionOn78) . BIND(?this AS ?pfs1t243) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn77))) AS ?pfsb74) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn78))) AS ?pfse75) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn77, 1) = 'N')) . BIND(URI(CONCAT(STR(?this), '#MF_01209a73')) AS ?annotation73) . BIND(?this AS ?pfs72) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch248 faldo:location ?templateMotifSequenceMatchRegionP0A6F1249 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0A6F1251 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP0A6F1MF_01209244 . ?templateMotifSequenceMatchRegionP0A6F1249 faldo:begin ?templateMotifSequenceMatchBeginP0A6F1250 . ?templateMotifSequenceMatchBeginP0A6F1250 faldo:position ?templateMotifSequenceMatchBeginPositionP0A6F1245 ; faldo:reference isoform:P0A6F1-1 . ?templateMotifSequenceProfileAlignmentOperationP0A6F1251 edam:has_input signature:MF_01209 ; rdf:type edam:operation_0300 . ?targetMotifMatch252 faldo:location ?targetMotifMatchRegionMatch253 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01209255 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP0A6F1MF_01209246 . ?targetMotifMatchRegionMatch253 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01209254 . ?targetMotifMatchRegionMatchBeginMF_01209254 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01209247 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_01209255 edam:has_input signature:MF_01209 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0A6F1MF_01209244, 1, (STRLEN(?templateMotifCigarP0A6F1MF_01209244) - STRLEN(REPLACE(?templateMotifCigarP0A6F1MF_01209244, CONCAT('^(?:-*[^-]){', STR(((313 - ?templateMotifSequenceMatchBeginPositionP0A6F1245) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1256) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0A6F1MF_01209246, 1, (STRLEN(?targetMotifMatchCigarP0A6F1MF_01209246) - STRLEN(REPLACE(?targetMotifMatchCigarP0A6F1MF_01209246, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1256), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0A6F1MF_01209246, 1, (STRLEN(?targetMotifMatchCigarP0A6F1MF_01209246) - STRLEN(REPLACE(?targetMotifMatchCigarP0A6F1MF_01209246, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1256), '}'), '')))), '[^-]', ''))) AS ?step2257) . BIND(((?step2257 + ?targetMotifMatchRegionMatchBeginPositionMF_01209247) - 1) AS ?thisPositionOn84) . BIND(?thisPositionOn84 AS ?thisPositionOn85) . BIND(?this AS ?pfs1t258) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn84))) AS ?pfsb81) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn85))) AS ?pfse82) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn84, 1) = 'G')) . BIND(URI(CONCAT(STR(?this), '#MF_01209a80')) AS ?annotation80) . BIND(?this AS ?pfs79) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch263 faldo:location ?templateMotifSequenceMatchRegionP0A6F1264 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0A6F1266 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP0A6F1MF_01209259 . ?templateMotifSequenceMatchRegionP0A6F1264 faldo:begin ?templateMotifSequenceMatchBeginP0A6F1265 . ?templateMotifSequenceMatchBeginP0A6F1265 faldo:position ?templateMotifSequenceMatchBeginPositionP0A6F1260 ; faldo:reference isoform:P0A6F1-1 . ?templateMotifSequenceProfileAlignmentOperationP0A6F1266 edam:has_input signature:MF_01209 ; rdf:type edam:operation_0300 . ?targetMotifMatch267 faldo:location ?targetMotifMatchRegionMatch268 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01209270 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP0A6F1MF_01209261 . ?targetMotifMatchRegionMatch268 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01209269 . ?targetMotifMatchRegionMatchBeginMF_01209269 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01209262 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_01209270 edam:has_input signature:MF_01209 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0A6F1MF_01209259, 1, (STRLEN(?templateMotifCigarP0A6F1MF_01209259) - STRLEN(REPLACE(?templateMotifCigarP0A6F1MF_01209259, CONCAT('^(?:-*[^-]){', STR(((314 - ?templateMotifSequenceMatchBeginPositionP0A6F1260) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1271) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0A6F1MF_01209261, 1, (STRLEN(?targetMotifMatchCigarP0A6F1MF_01209261) - STRLEN(REPLACE(?targetMotifMatchCigarP0A6F1MF_01209261, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1271), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0A6F1MF_01209261, 1, (STRLEN(?targetMotifMatchCigarP0A6F1MF_01209261) - STRLEN(REPLACE(?targetMotifMatchCigarP0A6F1MF_01209261, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1271), '}'), '')))), '[^-]', ''))) AS ?step2272) . BIND(((?step2272 + ?targetMotifMatchRegionMatchBeginPositionMF_01209262) - 1) AS ?thisPositionOn91) . BIND(?thisPositionOn91 AS ?thisPositionOn92) . BIND(?this AS ?pfs1t273) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn91))) AS ?pfsb88) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn92))) AS ?pfse89) . FILTER (REGEX('[YF]', SUBSTR(?thisSequenceValue, ?thisPositionOn91, 1))) . BIND(URI(CONCAT(STR(?this), '#MF_01209a87')) AS ?annotation87) . BIND(?this AS ?pfs86) . } OPTIONAL { ?this a up:Protein . { ?this up:encodedIn up:Plastid . } UNION { ?this up:encodedIn up:Chloroplast . } BIND(?this AS ?case12) . } }