CONSTRUCT { _:445826 up:source unirule:MF_01261 . _:445827 up:ecName '2.7.7.72' ; up:fullName 'CCA-adding enzyme' ; rdf:type up:Structured_Name . _:445828 up:fullName 'CCA tRNA nucleotidyltransferase' ; rdf:type up:Structured_Name . _:445829 up:fullName 'tRNA CCA-pyrophosphorylase' ; rdf:type up:Structured_Name . _:445830 up:fullName 'tRNA adenylyl-/cytidylyl-transferase' ; rdf:type up:Structured_Name . _:445831 up:fullName 'tRNA nucleotidyltransferase' ; rdf:type up:Structured_Name . _:445832 up:fullName 'tRNA-NT' ; rdf:type up:Structured_Name . _:445833 up:source unirule:MF_01261 . _:445834 up:ecName '3.1.3.-' ; up:fullName "2'-nucleotidase" ; rdf:type up:Structured_Name . _:445835 up:source unirule:MF_01261 . _:445836 up:ecName '3.1.4.-' ; up:fullName "2',3'-cyclic phosphodiesterase" ; rdf:type up:Structured_Name . _:445837 up:source unirule:MF_01261 . _:445838 up:ecName '3.1.3.-' ; up:fullName 'Phosphatase' ; rdf:type up:Structured_Name . _:445839 up:source unirule:MF_01261 . _:445840 up:source unirule:MF_01261 . _:445841 up:source unirule:MF_01261 . _:445842 up:source unirule:MF_01261 . _:445843 up:source unirule:MF_01261 . _:445844 up:source unirule:MF_01261 . _:445845 up:source unirule:MF_01261 . _:445846 up:source unirule:MF_01261 . _:445847 up:source unirule:MF_01261 . _:445848 up:source unirule:MF_01261 . _:445849 up:source unirule:MF_01261 . _:445850 up:source unirule:MF_01261 . _:445851 up:source unirule:MF_01261 . _:445852 up:source unirule:MF_01261 . _:445853 up:source unirule:MF_01261 . _:445854 up:source unirule:MF_01261 . _:445855 up:source unirule:MF_01261 . _:445856 up:source unirule:MF_01261 . _:445857 up:source unirule:MF_01261 . _:445858 up:source unirule:MF_01261 . _:445859 up:source unirule:MF_01261 . _:445860 up:source unirule:MF_01261 . _:445861 up:source unirule:MF_01261 . _:445862 up:source unirule:MF_01261 . _:445863 up:source unirule:MF_01261 . _:445864 up:source unirule:MF_01261 . _:445865 up:source unirule:MF_01261 . _:445866 up:source unirule:MF_01261 . _:445867 up:source unirule:MF_01261 . _:445868 up:source unirule:MF_01261 . _:445869 up:source unirule:MF_01261 . _:445870 up:source unirule:MF_01261 . _:445871 up:source unirule:MF_01261 . _:445872 up:source unirule:MF_01261 . _:445873 up:source unirule:MF_01261 . _:445874 up:source unirule:MF_01261 . _:445875 up:source unirule:MF_01261 . _:445876 up:source unirule:MF_01261 . _:445877 up:source unirule:MF_01261 . _:445878 up:source unirule:MF_01261 . _:445879 up:source unirule:MF_01261 . _:445880 up:source unirule:MF_01261 . _:445881 up:source unirule:MF_01261 . ?this up:annotation ?annotation6 , ?annotation7 , ?annotation9 , ?annotation11 , ?annotation12 , ?annotation13 , ?annotation14 , ?annotation15 , ?annotation16 ; up:classifiedWith GO:0000049 , GO:0000166 , GO:0000287 , GO:0001680 , GO:0004112 , GO:0004810 , GO:0005524 , GO:0016791 , keyword:378 , keyword:460 , keyword:479 , keyword:511 , keyword:533 , keyword:547 , keyword:548 , keyword:67 , keyword:692 , keyword:694 , keyword:808 , keyword:819 ; up:domain ?namedpart1 , ?namedpart2 , ?namedpart3 , ?namedpart4 ; up:recommendedName ?name0 . ?name0 up:fullName 'Multifunctional CCA protein' ; rdf:type up:Structured_Name . ?namedpart1 up:alternativeName _:445828 , _:445829 , _:445830 , _:445831 , _:445832 ; up:recommendedName _:445827 . ?namedpart2 up:recommendedName _:445834 . ?namedpart3 up:recommendedName _:445836 . ?namedpart4 up:recommendedName _:445838 . ?gene5 skos:prefLabel 'cca' . ?annotation6 a up:Function_Annotation ; rdfs:comment "Catalyzes the addition and repair of the essential 3'-terminal CCA sequence in tRNAs without using a nucleic acid template. Adds these three nucleotides in the order of C, C, and A to the tRNA nucleotide-73, using CTP and ATP as substrates and producing inorganic pyrophosphate. tRNA 3'-terminal CCA addition is required both for tRNA processing and repair. Also involved in tRNA surveillance by mediating tandem CCA addition to generate a CCACCA at the 3' terminus of unstable tRNAs. While stable tRNAs receive only 3'-terminal CCA, unstable tRNAs are marked with CCACCA and rapidly degraded." . ?annotation7 up:activity ?activity8 ; rdf:type up:Catalytic_Activity_Annotation . ?activity8 up:catalyticActivity <http://rdf.rhea-db.org/14433>; up:enzymeClass <http://purl.uniprot.org/enzyme/2.7.7.72>. ?annotation9 up:activity ?activity10 ; rdf:type up:Catalytic_Activity_Annotation . ?activity10 up:catalyticActivity <http://rdf.rhea-db.org/76235>. ?annotation11 up:cofactor chebi:18420 ; rdf:type up:Cofactor_Annotation ; rdfs:comment 'Magnesium is required for nucleotidyltransferase activity.' . ?annotation12 up:cofactor chebi:49786 ; rdf:type up:Cofactor_Annotation ; rdfs:comment 'Nickel for phosphatase activity.' . ?annotation13 a up:Subunit_Annotation ; rdfs:comment 'Monomer. Can also form homodimers and oligomers.' . ?annotation14 a up:Domain_Annotation ; rdfs:comment 'Comprises two domains: an N-terminal domain containing the nucleotidyltransferase activity and a C-terminal HD domain associated with both phosphodiesterase and phosphatase activities.' . ?annotation15 a up:Annotation ; rdfs:comment 'A single active site specifically recognizes both ATP and CTP and is responsible for their addition.' . ?annotation16 a up:Similarity_Annotation ; rdfs:comment 'Belongs to the tRNA nucleotidyltransferase/poly(A) polymerase family. Bacterial CCA-adding enzyme type 1 subfamily.' . ?pfs17 up:annotation ?annotation18 . ?annotation18 faldo:begin ?pfsb19 ; faldo:end ?pfse20 ; up:ligand ?ligand21 ; rdf:type up:Binding_Site_Annotation . ?pfsb19 faldo:position ?thisPositionOn22 ; rdf:type faldo:ExactPosition . ?pfse20 faldo:position ?thisPositionOn23 ; rdf:type faldo:ExactPosition . ?ligand21 rdfs:subClassOf chebi:18420 . ?pfs24 up:annotation ?annotation25 . ?annotation25 faldo:begin ?pfsb26 ; faldo:end ?pfse27 ; up:ligand ?ligand28 ; rdf:type up:Binding_Site_Annotation . ?pfsb26 faldo:position ?thisPositionOn29 ; rdf:type faldo:ExactPosition . ?pfse27 faldo:position ?thisPositionOn30 ; rdf:type faldo:ExactPosition . ?ligand28 rdfs:subClassOf chebi:18420 . ?pfs31 up:annotation ?annotation32 . ?annotation32 faldo:begin ?pfsb33 ; faldo:end ?pfse34 ; up:ligand ?ligand35 ; rdf:type up:Binding_Site_Annotation . ?pfsb33 faldo:position ?thisPositionOn36 ; rdf:type faldo:ExactPosition . ?pfse34 faldo:position ?thisPositionOn37 ; rdf:type faldo:ExactPosition . ?ligand35 rdfs:subClassOf chebi:30616 . ?pfs38 up:annotation ?annotation39 . ?annotation39 faldo:begin ?pfsb40 ; faldo:end ?pfse41 ; up:ligand ?ligand42 ; rdf:type up:Binding_Site_Annotation . ?pfsb40 faldo:position ?thisPositionOn43 ; rdf:type faldo:ExactPosition . ?pfse41 faldo:position ?thisPositionOn44 ; rdf:type faldo:ExactPosition . ?ligand42 rdfs:subClassOf chebi:37563 . ?pfs45 up:annotation ?annotation46 . ?annotation46 faldo:begin ?pfsb47 ; faldo:end ?pfse48 ; up:ligand ?ligand49 ; rdf:type up:Binding_Site_Annotation . ?pfsb47 faldo:position ?thisPositionOn50 ; rdf:type faldo:ExactPosition . ?pfse48 faldo:position ?thisPositionOn51 ; rdf:type faldo:ExactPosition . ?ligand49 rdfs:subClassOf chebi:30616 . ?pfs52 up:annotation ?annotation53 . ?annotation53 faldo:begin ?pfsb54 ; faldo:end ?pfse55 ; up:ligand ?ligand56 ; rdf:type up:Binding_Site_Annotation . ?pfsb54 faldo:position ?thisPositionOn57 ; rdf:type faldo:ExactPosition . ?pfse55 faldo:position ?thisPositionOn58 ; rdf:type faldo:ExactPosition . ?ligand56 rdfs:subClassOf chebi:37563 . ?pfs59 up:annotation ?annotation60 . ?annotation60 faldo:begin ?pfsb61 ; faldo:end ?pfse62 ; up:ligand ?ligand63 ; rdf:type up:Binding_Site_Annotation . ?pfsb61 faldo:position ?thisPositionOn64 ; rdf:type faldo:ExactPosition . ?pfse62 faldo:position ?thisPositionOn65 ; rdf:type faldo:ExactPosition . ?ligand63 rdfs:subClassOf chebi:30616 . ?pfs66 up:annotation ?annotation67 . ?annotation67 faldo:begin ?pfsb68 ; faldo:end ?pfse69 ; up:ligand ?ligand70 ; rdf:type up:Binding_Site_Annotation . ?pfsb68 faldo:position ?thisPositionOn71 ; rdf:type faldo:ExactPosition . ?pfse69 faldo:position ?thisPositionOn72 ; rdf:type faldo:ExactPosition . ?ligand70 rdfs:subClassOf chebi:37563 . ?pfs73 up:annotation ?annotation74 . ?annotation74 faldo:begin ?pfsb75 ; faldo:end ?pfse76 ; up:ligand ?ligand77 ; rdf:type up:Binding_Site_Annotation . ?pfsb75 faldo:position ?thisPositionOn78 ; rdf:type faldo:ExactPosition . ?pfse76 faldo:position ?thisPositionOn79 ; rdf:type faldo:ExactPosition . ?ligand77 rdfs:subClassOf chebi:30616 . ?pfs80 up:annotation ?annotation81 . ?annotation81 faldo:begin ?pfsb82 ; faldo:end ?pfse83 ; up:ligand ?ligand84 ; rdf:type up:Binding_Site_Annotation . ?pfsb82 faldo:position ?thisPositionOn85 ; rdf:type faldo:ExactPosition . ?pfse83 faldo:position ?thisPositionOn86 ; rdf:type faldo:ExactPosition . ?ligand84 rdfs:subClassOf chebi:37563 . ?pfs87 up:annotation ?annotation88 . ?annotation88 faldo:begin ?pfsb89 ; faldo:end ?pfse90 ; up:ligand ?ligand91 ; rdf:type up:Binding_Site_Annotation . ?pfsb89 faldo:position ?thisPositionOn92 ; rdf:type faldo:ExactPosition . ?pfse90 faldo:position ?thisPositionOn93 ; rdf:type faldo:ExactPosition . ?ligand91 rdfs:subClassOf chebi:30616 . ?pfs94 up:annotation ?annotation95 . ?annotation95 faldo:begin ?pfsb96 ; faldo:end ?pfse97 ; up:ligand ?ligand98 ; rdf:type up:Binding_Site_Annotation . ?pfsb96 faldo:position ?thisPositionOn99 ; rdf:type faldo:ExactPosition . ?pfse97 faldo:position ?thisPositionOn100 ; rdf:type faldo:ExactPosition . ?ligand98 rdfs:subClassOf chebi:37563 . _:445882 a rdf:Statement ; up:attribution _:445826 ; rdf:subject ?this ; rdf:predicate up:recommendedName ; rdf:object ?name0 . _:445883 a rdf:Statement ; up:attribution _:445833 ; rdf:subject ?this ; rdf:predicate up:domain ; rdf:object ?namedpart1 . _:445884 a rdf:Statement ; up:attribution _:445835 ; rdf:subject ?this ; rdf:predicate up:domain ; rdf:object ?namedpart2 . _:445885 a rdf:Statement ; up:attribution _:445837 ; rdf:subject ?this ; rdf:predicate up:domain ; rdf:object ?namedpart3 . _:445886 a rdf:Statement ; up:attribution _:445839 ; rdf:subject ?this ; rdf:predicate up:domain ; rdf:object ?namedpart4 . _:445887 a rdf:Statement ; up:attribution _:445840 ; rdf:subject ?gene5 ; rdf:predicate up:encodedBy ; rdf:object ?gene5 . _:445888 a rdf:Statement ; up:attribution _:445841 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation6 . _:445889 a rdf:Statement ; up:attribution _:445842 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation7 . _:445890 a rdf:Statement ; up:attribution _:445843 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation9 . _:445891 a rdf:Statement ; up:attribution _:445844 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation11 . _:445892 a rdf:Statement ; up:attribution _:445845 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation12 . _:445893 a rdf:Statement ; up:attribution _:445846 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation13 . _:445894 a rdf:Statement ; up:attribution _:445847 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation14 . _:445895 a rdf:Statement ; up:attribution _:445848 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation15 . _:445896 a rdf:Statement ; up:attribution _:445849 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation16 . _:445897 a rdf:Statement ; up:attribution _:445850 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:67 . _:445898 a rdf:Statement ; up:attribution _:445851 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:378 . _:445899 a rdf:Statement ; up:attribution _:445852 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:460 . _:445900 a rdf:Statement ; up:attribution _:445853 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:479 . _:445901 a rdf:Statement ; up:attribution _:445854 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:511 . _:445902 a rdf:Statement ; up:attribution _:445855 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:533 . _:445903 a rdf:Statement ; up:attribution _:445856 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:547 . _:445904 a rdf:Statement ; up:attribution _:445857 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:548 . _:445905 a rdf:Statement ; up:attribution _:445858 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:692 . _:445906 a rdf:Statement ; up:attribution _:445859 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:694 . _:445907 a rdf:Statement ; up:attribution _:445860 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:808 . _:445908 a rdf:Statement ; up:attribution _:445861 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:819 . _:445909 a rdf:Statement ; up:attribution _:445862 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object GO:0000049 . _:445910 a rdf:Statement ; up:attribution _:445863 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object GO:0000166 . _:445911 a rdf:Statement ; up:attribution _:445864 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object GO:0000287 . _:445912 a rdf:Statement ; up:attribution _:445865 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object GO:0004112 . _:445913 a rdf:Statement ; up:attribution _:445866 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object GO:0004810 . _:445914 a rdf:Statement ; up:attribution _:445867 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object GO:0005524 . _:445915 a rdf:Statement ; up:attribution _:445868 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object GO:0016791 . _:445916 a rdf:Statement ; up:attribution _:445869 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object GO:0001680 . _:445917 a rdf:Statement ; up:source unirule:MF_01261 ; rdf:subject ?pfs17 ; rdf:predicate up:annotation ; rdf:object ?annotation18 . _:445918 a rdf:Statement ; up:attribution _:445870 ; rdf:subject ?pfs17 ; rdf:predicate up:annotation ; rdf:object ?annotation18 . _:445919 a rdf:Statement ; up:source unirule:MF_01261 ; rdf:subject ?pfs24 ; rdf:predicate up:annotation ; rdf:object ?annotation25 . _:445920 a rdf:Statement ; up:attribution _:445871 ; rdf:subject ?pfs24 ; rdf:predicate up:annotation ; rdf:object ?annotation25 . _:445921 a rdf:Statement ; up:source unirule:MF_01261 ; rdf:subject ?pfs31 ; rdf:predicate up:annotation ; rdf:object ?annotation32 . _:445922 a rdf:Statement ; up:attribution _:445872 ; rdf:subject ?pfs31 ; rdf:predicate up:annotation ; rdf:object ?annotation32 . _:445923 a rdf:Statement ; up:source unirule:MF_01261 ; rdf:subject ?pfs38 ; rdf:predicate up:annotation ; rdf:object ?annotation39 . _:445924 a rdf:Statement ; up:attribution _:445873 ; rdf:subject ?pfs38 ; rdf:predicate up:annotation ; rdf:object ?annotation39 . _:445925 a rdf:Statement ; up:source unirule:MF_01261 ; rdf:subject ?pfs45 ; rdf:predicate up:annotation ; rdf:object ?annotation46 . _:445926 a rdf:Statement ; up:attribution _:445874 ; rdf:subject ?pfs45 ; rdf:predicate up:annotation ; rdf:object ?annotation46 . _:445927 a rdf:Statement ; up:source unirule:MF_01261 ; rdf:subject ?pfs52 ; rdf:predicate up:annotation ; rdf:object ?annotation53 . _:445928 a rdf:Statement ; up:attribution _:445875 ; rdf:subject ?pfs52 ; rdf:predicate up:annotation ; rdf:object ?annotation53 . _:445929 a rdf:Statement ; up:source unirule:MF_01261 ; rdf:subject ?pfs59 ; rdf:predicate up:annotation ; rdf:object ?annotation60 . _:445930 a rdf:Statement ; up:attribution _:445876 ; rdf:subject ?pfs59 ; rdf:predicate up:annotation ; rdf:object ?annotation60 . _:445931 a rdf:Statement ; up:source unirule:MF_01261 ; rdf:subject ?pfs66 ; rdf:predicate up:annotation ; rdf:object ?annotation67 . _:445932 a rdf:Statement ; up:attribution _:445877 ; rdf:subject ?pfs66 ; rdf:predicate up:annotation ; rdf:object ?annotation67 . _:445933 a rdf:Statement ; up:source unirule:MF_01261 ; rdf:subject ?pfs73 ; rdf:predicate up:annotation ; rdf:object ?annotation74 . _:445934 a rdf:Statement ; up:attribution _:445878 ; rdf:subject ?pfs73 ; rdf:predicate up:annotation ; rdf:object ?annotation74 . _:445935 a rdf:Statement ; up:source unirule:MF_01261 ; rdf:subject ?pfs80 ; rdf:predicate up:annotation ; rdf:object ?annotation81 . _:445936 a rdf:Statement ; up:attribution _:445879 ; rdf:subject ?pfs80 ; rdf:predicate up:annotation ; rdf:object ?annotation81 . _:445937 a rdf:Statement ; up:source unirule:MF_01261 ; rdf:subject ?pfs87 ; rdf:predicate up:annotation ; rdf:object ?annotation88 . _:445938 a rdf:Statement ; up:attribution _:445880 ; rdf:subject ?pfs87 ; rdf:predicate up:annotation ; rdf:object ?annotation88 . _:445939 a rdf:Statement ; up:source unirule:MF_01261 ; rdf:subject ?pfs94 ; rdf:predicate up:annotation ; rdf:object ?annotation95 . _:445940 a rdf:Statement ; up:attribution _:445881 ; rdf:subject ?pfs94 ; rdf:predicate up:annotation ; rdf:object ?annotation95 . } WHERE { #baseURI: http://purl.uniprot.org/unirule/MF_01261 #Rule MF_01261 Created by:? on:2005-07-29 Modified by:Edouard de Castro on:2024-09-03 ?this up:organism ?thisOrganism ; rdfs:seeAlso signature:MF_01261 . ?thisOrganism rdfs:subClassOf+ taxon:1224 . BIND(URI(CONCAT(STR(?this), '#MF_01261a0')) AS ?name0) . BIND(URI(CONCAT(STR(?this), '#MF_01261a1')) AS ?namedpart1) . BIND(URI(CONCAT(STR(?this), '#MF_01261a2')) AS ?namedpart2) . BIND(URI(CONCAT(STR(?this), '#MF_01261a3')) AS ?namedpart3) . BIND(URI(CONCAT(STR(?this), '#MF_01261a4')) AS ?namedpart4) . BIND(URI(CONCAT(STR(?this), '#MF_01261a6')) AS ?annotation6) . BIND(URI(CONCAT(STR(?this), '#MF_01261a7')) AS ?annotation7) . BIND(URI(CONCAT(STR(?this), '#MF_01261a9')) AS ?annotation9) . BIND(URI(CONCAT(STR(?this), '#MF_01261a11')) AS ?annotation11) . BIND(URI(CONCAT(STR(?this), '#MF_01261a12')) AS ?annotation12) . BIND(URI(CONCAT(STR(?this), '#MF_01261a13')) AS ?annotation13) . BIND(URI(CONCAT(STR(?this), '#MF_01261a14')) AS ?annotation14) . BIND(URI(CONCAT(STR(?this), '#MF_01261a15')) AS ?annotation15) . BIND(URI(CONCAT(STR(?this), '#MF_01261a16')) AS ?annotation16) . OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch105 faldo:location ?templateMotifSequenceMatchRegionP06961106 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP06961108 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP06961MF_01261101 . ?templateMotifSequenceMatchRegionP06961106 faldo:begin ?templateMotifSequenceMatchBeginP06961107 . ?templateMotifSequenceMatchBeginP06961107 faldo:position ?templateMotifSequenceMatchBeginPositionP06961102 ; faldo:reference isoform:P06961-1 . ?templateMotifSequenceProfileAlignmentOperationP06961108 edam:has_input signature:MF_01261 ; rdf:type edam:operation_0300 . ?targetMotifMatch109 faldo:location ?targetMotifMatchRegionMatch110 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01261112 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP06961MF_01261103 . ?targetMotifMatchRegionMatch110 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01261111 . ?targetMotifMatchRegionMatchBeginMF_01261111 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01261104 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_01261112 edam:has_input signature:MF_01261 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP06961MF_01261101, 1, (STRLEN(?templateMotifCigarP06961MF_01261101) - STRLEN(REPLACE(?templateMotifCigarP06961MF_01261101, CONCAT('^(?:-*[^-]){', STR(((21 - ?templateMotifSequenceMatchBeginPositionP06961102) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1113) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP06961MF_01261103, 1, (STRLEN(?targetMotifMatchCigarP06961MF_01261103) - STRLEN(REPLACE(?targetMotifMatchCigarP06961MF_01261103, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1113), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP06961MF_01261103, 1, (STRLEN(?targetMotifMatchCigarP06961MF_01261103) - STRLEN(REPLACE(?targetMotifMatchCigarP06961MF_01261103, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1113), '}'), '')))), '[^-]', ''))) AS ?step2114) . BIND(((?step2114 + ?targetMotifMatchRegionMatchBeginPositionMF_01261104) - 1) AS ?thisPositionOn22) . BIND(?thisPositionOn22 AS ?thisPositionOn23) . BIND(?this AS ?pfs1t115) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn22))) AS ?pfsb19) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn23))) AS ?pfse20) . FILTER (REGEX('[DE]', SUBSTR(?thisSequenceValue, ?thisPositionOn22, 1))) . BIND(URI(CONCAT(STR(?this), '#MF_01261a18')) AS ?annotation18) . BIND(?this AS ?pfs17) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch120 faldo:location ?templateMotifSequenceMatchRegionP06961121 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP06961123 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP06961MF_01261116 . ?templateMotifSequenceMatchRegionP06961121 faldo:begin ?templateMotifSequenceMatchBeginP06961122 . ?templateMotifSequenceMatchBeginP06961122 faldo:position ?templateMotifSequenceMatchBeginPositionP06961117 ; faldo:reference isoform:P06961-1 . ?templateMotifSequenceProfileAlignmentOperationP06961123 edam:has_input signature:MF_01261 ; rdf:type edam:operation_0300 . ?targetMotifMatch124 faldo:location ?targetMotifMatchRegionMatch125 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01261127 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP06961MF_01261118 . ?targetMotifMatchRegionMatch125 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01261126 . ?targetMotifMatchRegionMatchBeginMF_01261126 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01261119 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_01261127 edam:has_input signature:MF_01261 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP06961MF_01261116, 1, (STRLEN(?templateMotifCigarP06961MF_01261116) - STRLEN(REPLACE(?templateMotifCigarP06961MF_01261116, CONCAT('^(?:-*[^-]){', STR(((23 - ?templateMotifSequenceMatchBeginPositionP06961117) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1128) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP06961MF_01261118, 1, (STRLEN(?targetMotifMatchCigarP06961MF_01261118) - STRLEN(REPLACE(?targetMotifMatchCigarP06961MF_01261118, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1128), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP06961MF_01261118, 1, (STRLEN(?targetMotifMatchCigarP06961MF_01261118) - STRLEN(REPLACE(?targetMotifMatchCigarP06961MF_01261118, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1128), '}'), '')))), '[^-]', ''))) AS ?step2129) . BIND(((?step2129 + ?targetMotifMatchRegionMatchBeginPositionMF_01261119) - 1) AS ?thisPositionOn29) . BIND(?thisPositionOn29 AS ?thisPositionOn30) . BIND(?this AS ?pfs1t130) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn29))) AS ?pfsb26) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn30))) AS ?pfse27) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn29, 1) = 'D')) . BIND(URI(CONCAT(STR(?this), '#MF_01261a25')) AS ?annotation25) . BIND(?this AS ?pfs24) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch135 faldo:location ?templateMotifSequenceMatchRegionP06961136 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP06961138 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP06961MF_01261131 . ?templateMotifSequenceMatchRegionP06961136 faldo:begin ?templateMotifSequenceMatchBeginP06961137 . ?templateMotifSequenceMatchBeginP06961137 faldo:position ?templateMotifSequenceMatchBeginPositionP06961132 ; faldo:reference isoform:P06961-1 . ?templateMotifSequenceProfileAlignmentOperationP06961138 edam:has_input signature:MF_01261 ; rdf:type edam:operation_0300 . ?targetMotifMatch139 faldo:location ?targetMotifMatchRegionMatch140 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01261142 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP06961MF_01261133 . ?targetMotifMatchRegionMatch140 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01261141 . ?targetMotifMatchRegionMatchBeginMF_01261141 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01261134 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_01261142 edam:has_input signature:MF_01261 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP06961MF_01261131, 1, (STRLEN(?templateMotifCigarP06961MF_01261131) - STRLEN(REPLACE(?templateMotifCigarP06961MF_01261131, CONCAT('^(?:-*[^-]){', STR(((8 - ?templateMotifSequenceMatchBeginPositionP06961132) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1143) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP06961MF_01261133, 1, (STRLEN(?targetMotifMatchCigarP06961MF_01261133) - STRLEN(REPLACE(?targetMotifMatchCigarP06961MF_01261133, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1143), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP06961MF_01261133, 1, (STRLEN(?targetMotifMatchCigarP06961MF_01261133) - STRLEN(REPLACE(?targetMotifMatchCigarP06961MF_01261133, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1143), '}'), '')))), '[^-]', ''))) AS ?step2144) . BIND(((?step2144 + ?targetMotifMatchRegionMatchBeginPositionMF_01261134) - 1) AS ?thisPositionOn36) . BIND(?thisPositionOn36 AS ?thisPositionOn37) . BIND(?this AS ?pfs1t145) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn36))) AS ?pfsb33) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn37))) AS ?pfse34) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn36, 1) = 'G')) . BIND(URI(CONCAT(STR(?this), '#MF_01261a32')) AS ?annotation32) . BIND(?this AS ?pfs31) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch150 faldo:location ?templateMotifSequenceMatchRegionP06961151 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP06961153 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP06961MF_01261146 . ?templateMotifSequenceMatchRegionP06961151 faldo:begin ?templateMotifSequenceMatchBeginP06961152 . ?templateMotifSequenceMatchBeginP06961152 faldo:position ?templateMotifSequenceMatchBeginPositionP06961147 ; faldo:reference isoform:P06961-1 . ?templateMotifSequenceProfileAlignmentOperationP06961153 edam:has_input signature:MF_01261 ; rdf:type edam:operation_0300 . ?targetMotifMatch154 faldo:location ?targetMotifMatchRegionMatch155 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01261157 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP06961MF_01261148 . ?targetMotifMatchRegionMatch155 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01261156 . ?targetMotifMatchRegionMatchBeginMF_01261156 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01261149 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_01261157 edam:has_input signature:MF_01261 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP06961MF_01261146, 1, (STRLEN(?templateMotifCigarP06961MF_01261146) - STRLEN(REPLACE(?templateMotifCigarP06961MF_01261146, CONCAT('^(?:-*[^-]){', STR(((8 - ?templateMotifSequenceMatchBeginPositionP06961147) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1158) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP06961MF_01261148, 1, (STRLEN(?targetMotifMatchCigarP06961MF_01261148) - STRLEN(REPLACE(?targetMotifMatchCigarP06961MF_01261148, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1158), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP06961MF_01261148, 1, (STRLEN(?targetMotifMatchCigarP06961MF_01261148) - STRLEN(REPLACE(?targetMotifMatchCigarP06961MF_01261148, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1158), '}'), '')))), '[^-]', ''))) AS ?step2159) . BIND(((?step2159 + ?targetMotifMatchRegionMatchBeginPositionMF_01261149) - 1) AS ?thisPositionOn43) . BIND(?thisPositionOn43 AS ?thisPositionOn44) . BIND(?this AS ?pfs1t160) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn43))) AS ?pfsb40) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn44))) AS ?pfse41) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn43, 1) = 'G')) . BIND(URI(CONCAT(STR(?this), '#MF_01261a39')) AS ?annotation39) . BIND(?this AS ?pfs38) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch165 faldo:location ?templateMotifSequenceMatchRegionP06961166 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP06961168 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP06961MF_01261161 . ?templateMotifSequenceMatchRegionP06961166 faldo:begin ?templateMotifSequenceMatchBeginP06961167 . ?templateMotifSequenceMatchBeginP06961167 faldo:position ?templateMotifSequenceMatchBeginPositionP06961162 ; faldo:reference isoform:P06961-1 . ?templateMotifSequenceProfileAlignmentOperationP06961168 edam:has_input signature:MF_01261 ; rdf:type edam:operation_0300 . ?targetMotifMatch169 faldo:location ?targetMotifMatchRegionMatch170 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01261172 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP06961MF_01261163 . ?targetMotifMatchRegionMatch170 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01261171 . ?targetMotifMatchRegionMatchBeginMF_01261171 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01261164 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_01261172 edam:has_input signature:MF_01261 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP06961MF_01261161, 1, (STRLEN(?templateMotifCigarP06961MF_01261161) - STRLEN(REPLACE(?templateMotifCigarP06961MF_01261161, CONCAT('^(?:-*[^-]){', STR(((11 - ?templateMotifSequenceMatchBeginPositionP06961162) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1173) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP06961MF_01261163, 1, (STRLEN(?targetMotifMatchCigarP06961MF_01261163) - STRLEN(REPLACE(?targetMotifMatchCigarP06961MF_01261163, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1173), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP06961MF_01261163, 1, (STRLEN(?targetMotifMatchCigarP06961MF_01261163) - STRLEN(REPLACE(?targetMotifMatchCigarP06961MF_01261163, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1173), '}'), '')))), '[^-]', ''))) AS ?step2174) . BIND(((?step2174 + ?targetMotifMatchRegionMatchBeginPositionMF_01261164) - 1) AS ?thisPositionOn50) . BIND(?thisPositionOn50 AS ?thisPositionOn51) . BIND(?this AS ?pfs1t175) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn50))) AS ?pfsb47) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn51))) AS ?pfse48) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn50, 1) = 'R')) . BIND(URI(CONCAT(STR(?this), '#MF_01261a46')) AS ?annotation46) . BIND(?this AS ?pfs45) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch180 faldo:location ?templateMotifSequenceMatchRegionP06961181 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP06961183 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP06961MF_01261176 . ?templateMotifSequenceMatchRegionP06961181 faldo:begin ?templateMotifSequenceMatchBeginP06961182 . ?templateMotifSequenceMatchBeginP06961182 faldo:position ?templateMotifSequenceMatchBeginPositionP06961177 ; faldo:reference isoform:P06961-1 . ?templateMotifSequenceProfileAlignmentOperationP06961183 edam:has_input signature:MF_01261 ; rdf:type edam:operation_0300 . ?targetMotifMatch184 faldo:location ?targetMotifMatchRegionMatch185 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01261187 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP06961MF_01261178 . ?targetMotifMatchRegionMatch185 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01261186 . ?targetMotifMatchRegionMatchBeginMF_01261186 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01261179 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_01261187 edam:has_input signature:MF_01261 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP06961MF_01261176, 1, (STRLEN(?templateMotifCigarP06961MF_01261176) - STRLEN(REPLACE(?templateMotifCigarP06961MF_01261176, CONCAT('^(?:-*[^-]){', STR(((11 - ?templateMotifSequenceMatchBeginPositionP06961177) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1188) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP06961MF_01261178, 1, (STRLEN(?targetMotifMatchCigarP06961MF_01261178) - STRLEN(REPLACE(?targetMotifMatchCigarP06961MF_01261178, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1188), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP06961MF_01261178, 1, (STRLEN(?targetMotifMatchCigarP06961MF_01261178) - STRLEN(REPLACE(?targetMotifMatchCigarP06961MF_01261178, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1188), '}'), '')))), '[^-]', ''))) AS ?step2189) . BIND(((?step2189 + ?targetMotifMatchRegionMatchBeginPositionMF_01261179) - 1) AS ?thisPositionOn57) . BIND(?thisPositionOn57 AS ?thisPositionOn58) . BIND(?this AS ?pfs1t190) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn57))) AS ?pfsb54) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn58))) AS ?pfse55) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn57, 1) = 'R')) . BIND(URI(CONCAT(STR(?this), '#MF_01261a53')) AS ?annotation53) . BIND(?this AS ?pfs52) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch195 faldo:location ?templateMotifSequenceMatchRegionP06961196 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP06961198 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP06961MF_01261191 . ?templateMotifSequenceMatchRegionP06961196 faldo:begin ?templateMotifSequenceMatchBeginP06961197 . ?templateMotifSequenceMatchBeginP06961197 faldo:position ?templateMotifSequenceMatchBeginPositionP06961192 ; faldo:reference isoform:P06961-1 . ?templateMotifSequenceProfileAlignmentOperationP06961198 edam:has_input signature:MF_01261 ; rdf:type edam:operation_0300 . ?targetMotifMatch199 faldo:location ?targetMotifMatchRegionMatch200 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01261202 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP06961MF_01261193 . ?targetMotifMatchRegionMatch200 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01261201 . ?targetMotifMatchRegionMatchBeginMF_01261201 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01261194 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_01261202 edam:has_input signature:MF_01261 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP06961MF_01261191, 1, (STRLEN(?templateMotifCigarP06961MF_01261191) - STRLEN(REPLACE(?templateMotifCigarP06961MF_01261191, CONCAT('^(?:-*[^-]){', STR(((91 - ?templateMotifSequenceMatchBeginPositionP06961192) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1203) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP06961MF_01261193, 1, (STRLEN(?targetMotifMatchCigarP06961MF_01261193) - STRLEN(REPLACE(?targetMotifMatchCigarP06961MF_01261193, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1203), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP06961MF_01261193, 1, (STRLEN(?targetMotifMatchCigarP06961MF_01261193) - STRLEN(REPLACE(?targetMotifMatchCigarP06961MF_01261193, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1203), '}'), '')))), '[^-]', ''))) AS ?step2204) . BIND(((?step2204 + ?targetMotifMatchRegionMatchBeginPositionMF_01261194) - 1) AS ?thisPositionOn64) . BIND(?thisPositionOn64 AS ?thisPositionOn65) . BIND(?this AS ?pfs1t205) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn64))) AS ?pfsb61) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn65))) AS ?pfse62) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn64, 1) = 'R')) . BIND(URI(CONCAT(STR(?this), '#MF_01261a60')) AS ?annotation60) . BIND(?this AS ?pfs59) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch210 faldo:location ?templateMotifSequenceMatchRegionP06961211 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP06961213 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP06961MF_01261206 . ?templateMotifSequenceMatchRegionP06961211 faldo:begin ?templateMotifSequenceMatchBeginP06961212 . ?templateMotifSequenceMatchBeginP06961212 faldo:position ?templateMotifSequenceMatchBeginPositionP06961207 ; faldo:reference isoform:P06961-1 . ?templateMotifSequenceProfileAlignmentOperationP06961213 edam:has_input signature:MF_01261 ; rdf:type edam:operation_0300 . ?targetMotifMatch214 faldo:location ?targetMotifMatchRegionMatch215 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01261217 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP06961MF_01261208 . ?targetMotifMatchRegionMatch215 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01261216 . ?targetMotifMatchRegionMatchBeginMF_01261216 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01261209 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_01261217 edam:has_input signature:MF_01261 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP06961MF_01261206, 1, (STRLEN(?templateMotifCigarP06961MF_01261206) - STRLEN(REPLACE(?templateMotifCigarP06961MF_01261206, CONCAT('^(?:-*[^-]){', STR(((91 - ?templateMotifSequenceMatchBeginPositionP06961207) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1218) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP06961MF_01261208, 1, (STRLEN(?targetMotifMatchCigarP06961MF_01261208) - STRLEN(REPLACE(?targetMotifMatchCigarP06961MF_01261208, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1218), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP06961MF_01261208, 1, (STRLEN(?targetMotifMatchCigarP06961MF_01261208) - STRLEN(REPLACE(?targetMotifMatchCigarP06961MF_01261208, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1218), '}'), '')))), '[^-]', ''))) AS ?step2219) . BIND(((?step2219 + ?targetMotifMatchRegionMatchBeginPositionMF_01261209) - 1) AS ?thisPositionOn71) . BIND(?thisPositionOn71 AS ?thisPositionOn72) . BIND(?this AS ?pfs1t220) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn71))) AS ?pfsb68) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn72))) AS ?pfse69) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn71, 1) = 'R')) . BIND(URI(CONCAT(STR(?this), '#MF_01261a67')) AS ?annotation67) . BIND(?this AS ?pfs66) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch225 faldo:location ?templateMotifSequenceMatchRegionP06961226 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP06961228 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP06961MF_01261221 . ?templateMotifSequenceMatchRegionP06961226 faldo:begin ?templateMotifSequenceMatchBeginP06961227 . ?templateMotifSequenceMatchBeginP06961227 faldo:position ?templateMotifSequenceMatchBeginPositionP06961222 ; faldo:reference isoform:P06961-1 . ?templateMotifSequenceProfileAlignmentOperationP06961228 edam:has_input signature:MF_01261 ; rdf:type edam:operation_0300 . ?targetMotifMatch229 faldo:location ?targetMotifMatchRegionMatch230 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01261232 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP06961MF_01261223 . ?targetMotifMatchRegionMatch230 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01261231 . ?targetMotifMatchRegionMatchBeginMF_01261231 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01261224 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_01261232 edam:has_input signature:MF_01261 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP06961MF_01261221, 1, (STRLEN(?templateMotifCigarP06961MF_01261221) - STRLEN(REPLACE(?templateMotifCigarP06961MF_01261221, CONCAT('^(?:-*[^-]){', STR(((137 - ?templateMotifSequenceMatchBeginPositionP06961222) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1233) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP06961MF_01261223, 1, (STRLEN(?targetMotifMatchCigarP06961MF_01261223) - STRLEN(REPLACE(?targetMotifMatchCigarP06961MF_01261223, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1233), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP06961MF_01261223, 1, (STRLEN(?targetMotifMatchCigarP06961MF_01261223) - STRLEN(REPLACE(?targetMotifMatchCigarP06961MF_01261223, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1233), '}'), '')))), '[^-]', ''))) AS ?step2234) . BIND(((?step2234 + ?targetMotifMatchRegionMatchBeginPositionMF_01261224) - 1) AS ?thisPositionOn78) . BIND(?thisPositionOn78 AS ?thisPositionOn79) . BIND(?this AS ?pfs1t235) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn78))) AS ?pfsb75) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn79))) AS ?pfse76) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn78, 1) = 'R')) . BIND(URI(CONCAT(STR(?this), '#MF_01261a74')) AS ?annotation74) . BIND(?this AS ?pfs73) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch240 faldo:location ?templateMotifSequenceMatchRegionP06961241 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP06961243 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP06961MF_01261236 . ?templateMotifSequenceMatchRegionP06961241 faldo:begin ?templateMotifSequenceMatchBeginP06961242 . ?templateMotifSequenceMatchBeginP06961242 faldo:position ?templateMotifSequenceMatchBeginPositionP06961237 ; faldo:reference isoform:P06961-1 . ?templateMotifSequenceProfileAlignmentOperationP06961243 edam:has_input signature:MF_01261 ; rdf:type edam:operation_0300 . ?targetMotifMatch244 faldo:location ?targetMotifMatchRegionMatch245 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01261247 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP06961MF_01261238 . ?targetMotifMatchRegionMatch245 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01261246 . ?targetMotifMatchRegionMatchBeginMF_01261246 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01261239 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_01261247 edam:has_input signature:MF_01261 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP06961MF_01261236, 1, (STRLEN(?templateMotifCigarP06961MF_01261236) - STRLEN(REPLACE(?templateMotifCigarP06961MF_01261236, CONCAT('^(?:-*[^-]){', STR(((137 - ?templateMotifSequenceMatchBeginPositionP06961237) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1248) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP06961MF_01261238, 1, (STRLEN(?targetMotifMatchCigarP06961MF_01261238) - STRLEN(REPLACE(?targetMotifMatchCigarP06961MF_01261238, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1248), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP06961MF_01261238, 1, (STRLEN(?targetMotifMatchCigarP06961MF_01261238) - STRLEN(REPLACE(?targetMotifMatchCigarP06961MF_01261238, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1248), '}'), '')))), '[^-]', ''))) AS ?step2249) . BIND(((?step2249 + ?targetMotifMatchRegionMatchBeginPositionMF_01261239) - 1) AS ?thisPositionOn85) . BIND(?thisPositionOn85 AS ?thisPositionOn86) . BIND(?this AS ?pfs1t250) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn85))) AS ?pfsb82) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn86))) AS ?pfse83) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn85, 1) = 'R')) . BIND(URI(CONCAT(STR(?this), '#MF_01261a81')) AS ?annotation81) . BIND(?this AS ?pfs80) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch255 faldo:location ?templateMotifSequenceMatchRegionP06961256 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP06961258 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP06961MF_01261251 . ?templateMotifSequenceMatchRegionP06961256 faldo:begin ?templateMotifSequenceMatchBeginP06961257 . ?templateMotifSequenceMatchBeginP06961257 faldo:position ?templateMotifSequenceMatchBeginPositionP06961252 ; faldo:reference isoform:P06961-1 . ?templateMotifSequenceProfileAlignmentOperationP06961258 edam:has_input signature:MF_01261 ; rdf:type edam:operation_0300 . ?targetMotifMatch259 faldo:location ?targetMotifMatchRegionMatch260 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01261262 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP06961MF_01261253 . ?targetMotifMatchRegionMatch260 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01261261 . ?targetMotifMatchRegionMatchBeginMF_01261261 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01261254 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_01261262 edam:has_input signature:MF_01261 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP06961MF_01261251, 1, (STRLEN(?templateMotifCigarP06961MF_01261251) - STRLEN(REPLACE(?templateMotifCigarP06961MF_01261251, CONCAT('^(?:-*[^-]){', STR(((140 - ?templateMotifSequenceMatchBeginPositionP06961252) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1263) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP06961MF_01261253, 1, (STRLEN(?targetMotifMatchCigarP06961MF_01261253) - STRLEN(REPLACE(?targetMotifMatchCigarP06961MF_01261253, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1263), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP06961MF_01261253, 1, (STRLEN(?targetMotifMatchCigarP06961MF_01261253) - STRLEN(REPLACE(?targetMotifMatchCigarP06961MF_01261253, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1263), '}'), '')))), '[^-]', ''))) AS ?step2264) . BIND(((?step2264 + ?targetMotifMatchRegionMatchBeginPositionMF_01261254) - 1) AS ?thisPositionOn92) . BIND(?thisPositionOn92 AS ?thisPositionOn93) . BIND(?this AS ?pfs1t265) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn92))) AS ?pfsb89) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn93))) AS ?pfse90) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn92, 1) = 'R')) . BIND(URI(CONCAT(STR(?this), '#MF_01261a88')) AS ?annotation88) . BIND(?this AS ?pfs87) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch270 faldo:location ?templateMotifSequenceMatchRegionP06961271 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP06961273 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP06961MF_01261266 . ?templateMotifSequenceMatchRegionP06961271 faldo:begin ?templateMotifSequenceMatchBeginP06961272 . ?templateMotifSequenceMatchBeginP06961272 faldo:position ?templateMotifSequenceMatchBeginPositionP06961267 ; faldo:reference isoform:P06961-1 . ?templateMotifSequenceProfileAlignmentOperationP06961273 edam:has_input signature:MF_01261 ; rdf:type edam:operation_0300 . ?targetMotifMatch274 faldo:location ?targetMotifMatchRegionMatch275 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01261277 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP06961MF_01261268 . ?targetMotifMatchRegionMatch275 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01261276 . ?targetMotifMatchRegionMatchBeginMF_01261276 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01261269 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_01261277 edam:has_input signature:MF_01261 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP06961MF_01261266, 1, (STRLEN(?templateMotifCigarP06961MF_01261266) - STRLEN(REPLACE(?templateMotifCigarP06961MF_01261266, CONCAT('^(?:-*[^-]){', STR(((140 - ?templateMotifSequenceMatchBeginPositionP06961267) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1278) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP06961MF_01261268, 1, (STRLEN(?targetMotifMatchCigarP06961MF_01261268) - STRLEN(REPLACE(?targetMotifMatchCigarP06961MF_01261268, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1278), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP06961MF_01261268, 1, (STRLEN(?targetMotifMatchCigarP06961MF_01261268) - STRLEN(REPLACE(?targetMotifMatchCigarP06961MF_01261268, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1278), '}'), '')))), '[^-]', ''))) AS ?step2279) . BIND(((?step2279 + ?targetMotifMatchRegionMatchBeginPositionMF_01261269) - 1) AS ?thisPositionOn99) . BIND(?thisPositionOn99 AS ?thisPositionOn100) . BIND(?this AS ?pfs1t280) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn99))) AS ?pfsb96) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn100))) AS ?pfse97) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn99, 1) = 'R')) . BIND(URI(CONCAT(STR(?this), '#MF_01261a95')) AS ?annotation95) . BIND(?this AS ?pfs94) . } }