CONSTRUCT { _:448472 up:source unirule:MF_01264 . _:448473 up:source unirule:MF_01264 . _:448474 up:source unirule:MF_01264 . _:448475 up:source unirule:MF_01264 . _:448476 up:source unirule:MF_01264 . _:448477 up:source unirule:MF_01264 . _:448478 up:source unirule:MF_01264 . _:448479 up:source unirule:MF_01264 . _:448480 up:source unirule:MF_01264 . _:448481 up:source unirule:MF_01264 . _:448482 up:source unirule:MF_01264 . _:448483 up:source unirule:MF_01264 . _:448484 up:source unirule:MF_01264 . _:448485 up:source unirule:MF_01264 . _:448486 up:source unirule:MF_01264 . _:448487 up:source unirule:MF_01264 . _:448488 up:source unirule:MF_01264 . _:448489 up:source unirule:MF_01264 . _:448490 up:source unirule:MF_01264 . _:448491 up:source unirule:MF_01264 . _:448492 up:source unirule:MF_01264 . _:448493 up:source unirule:MF_01264 . _:448494 up:source unirule:MF_01264 . _:448495 up:source unirule:MF_01264 . _:448496 up:source unirule:MF_01264 . _:448497 up:source unirule:MF_01264 . _:448498 up:source unirule:MF_01264 . _:448499 up:source unirule:MF_01264 . _:448500 up:source unirule:MF_01264 . _:448501 up:source unirule:MF_01264 . _:448502 up:source unirule:MF_01264 . _:448503 up:source unirule:MF_01264 . _:448504 up:source unirule:MF_01264 . _:448505 up:source unirule:MF_01264 . _:448506 up:source unirule:MF_01264 . _:448507 up:source unirule:MF_01264 . _:448508 up:source unirule:MF_01264 . _:448509 up:source unirule:MF_01264 . _:448510 up:source unirule:MF_01264 . _:448511 up:source unirule:MF_01264 . _:448512 up:source unirule:MF_01264 . _:448513 up:source unirule:MF_01264 . ?this up:alternativeName ?name1 , ?name2 , ?name3 , ?name4 , ?name5 ; up:annotation ?annotation7 , ?annotation8 , ?annotation10 , ?annotation12 , ?annotation13 , ?annotation14 , ?annotation15 ; up:classifiedWith GO:0000049 , GO:0000166 , GO:0000287 , GO:0001680 , GO:0004810 , GO:0005524 , keyword:460 , keyword:479 , keyword:547 , keyword:548 , keyword:67 , keyword:692 , keyword:694 , keyword:808 , keyword:819 ; up:recommendedName ?name0 . ?name0 up:ecName '2.7.7.72' ; up:fullName 'CCA-adding enzyme' ; rdf:type up:Structured_Name . ?name1 up:fullName 'CCA tRNA nucleotidyltransferase' ; rdf:type up:Structured_Name . ?name2 up:fullName 'tRNA CCA-pyrophosphorylase' ; rdf:type up:Structured_Name . ?name3 up:fullName 'tRNA adenylyl-/cytidylyl- transferase' ; rdf:type up:Structured_Name . ?name4 up:fullName 'tRNA nucleotidyltransferase' ; rdf:type up:Structured_Name . ?name5 up:fullName 'tRNA-NT' ; rdf:type up:Structured_Name . ?gene6 skos:prefLabel 'cca' . ?annotation7 a up:Function_Annotation ; rdfs:comment "Catalyzes the addition and repair of the essential 3'-terminal CCA sequence in tRNAs without using a nucleic acid template. Adds these three nucleotides in the order of C, C, and A to the tRNA nucleotide-73, using CTP and ATP as substrates and producing inorganic pyrophosphate. tRNA 3'-terminal CCA addition is required both for tRNA processing and repair. Also involved in tRNA surveillance by mediating tandem CCA addition to generate a CCACCA at the 3' terminus of unstable tRNAs. While stable tRNAs receive only 3'-terminal CCA, unstable tRNAs are marked with CCACCA and rapidly degraded." . ?annotation8 up:activity ?activity9 ; rdf:type up:Catalytic_Activity_Annotation . ?activity9 up:catalyticActivity <http://rdf.rhea-db.org/14433>; up:enzymeClass <http://purl.uniprot.org/enzyme/2.7.7.72>. ?annotation10 up:activity ?activity11 ; rdf:type up:Catalytic_Activity_Annotation . ?activity11 up:catalyticActivity <http://rdf.rhea-db.org/76235>. ?annotation12 up:cofactor chebi:18420 ; rdf:type up:Cofactor_Annotation . ?annotation13 a up:Subunit_Annotation ; rdfs:comment 'Homodimer.' . ?annotation14 a up:Annotation ; rdfs:comment 'A single active site specifically recognizes both ATP and CTP and is responsible for their addition.' . ?annotation15 a up:Similarity_Annotation ; rdfs:comment 'Belongs to the tRNA nucleotidyltransferase/poly(A) polymerase family. Archaeal CCA-adding enzyme subfamily.' . ?pfs16 up:annotation ?annotation17 . ?annotation17 faldo:begin ?pfsb18 ; faldo:end ?pfse19 ; up:ligand ?ligand20 ; rdf:type up:Binding_Site_Annotation . ?pfsb18 faldo:position ?thisPositionOn21 ; rdf:type faldo:ExactPosition . ?pfse19 faldo:position ?thisPositionOn22 ; rdf:type faldo:ExactPosition . ?ligand20 rdfs:subClassOf chebi:18420 . ?pfs23 up:annotation ?annotation24 . ?annotation24 faldo:begin ?pfsb25 ; faldo:end ?pfse26 ; up:ligand ?ligand27 ; rdf:type up:Binding_Site_Annotation . ?pfsb25 faldo:position ?thisPositionOn28 ; rdf:type faldo:ExactPosition . ?pfse26 faldo:position ?thisPositionOn29 ; rdf:type faldo:ExactPosition . ?ligand27 rdfs:subClassOf chebi:18420 . ?pfs30 up:annotation ?annotation31 . ?annotation31 faldo:begin ?pfsb32 ; faldo:end ?pfse33 ; up:ligand ?ligand34 ; rdf:type up:Binding_Site_Annotation . ?pfsb32 faldo:position ?thisPositionOn35 ; rdf:type faldo:ExactPosition . ?pfse33 faldo:position ?thisPositionOn36 ; rdf:type faldo:ExactPosition . ?ligand34 rdfs:subClassOf chebi:18420 . ?pfs37 up:annotation ?annotation38 . ?annotation38 faldo:begin ?pfsb39 ; faldo:end ?pfse40 ; up:ligand ?ligand41 ; rdf:type up:Binding_Site_Annotation . ?pfsb39 faldo:position ?thisPositionOn42 ; rdf:type faldo:ExactPosition . ?pfse40 faldo:position ?thisPositionOn43 ; rdf:type faldo:ExactPosition . ?ligand41 rdfs:subClassOf chebi:30616 . ?pfs44 up:annotation ?annotation45 . ?annotation45 faldo:begin ?pfsb46 ; faldo:end ?pfse47 ; up:ligand ?ligand48 ; rdf:type up:Binding_Site_Annotation . ?pfsb46 faldo:position ?thisPositionOn49 ; rdf:type faldo:ExactPosition . ?pfse47 faldo:position ?thisPositionOn50 ; rdf:type faldo:ExactPosition . ?ligand48 rdfs:subClassOf chebi:37563 . ?pfs51 up:annotation ?annotation52 . ?annotation52 faldo:begin ?pfsb53 ; faldo:end ?pfse54 ; up:ligand ?ligand55 ; rdf:type up:Binding_Site_Annotation . ?pfsb53 faldo:position ?thisPositionOn56 ; rdf:type faldo:ExactPosition . ?pfse54 faldo:position ?thisPositionOn57 ; rdf:type faldo:ExactPosition . ?ligand55 rdfs:subClassOf chebi:30616 . ?pfs58 up:annotation ?annotation59 . ?annotation59 faldo:begin ?pfsb60 ; faldo:end ?pfse61 ; up:ligand ?ligand62 ; rdf:type up:Binding_Site_Annotation . ?pfsb60 faldo:position ?thisPositionOn63 ; rdf:type faldo:ExactPosition . ?pfse61 faldo:position ?thisPositionOn64 ; rdf:type faldo:ExactPosition . ?ligand62 rdfs:subClassOf chebi:37563 . ?pfs65 up:annotation ?annotation66 . ?annotation66 faldo:begin ?pfsb67 ; faldo:end ?pfse68 ; up:ligand ?ligand69 ; rdf:type up:Binding_Site_Annotation . ?pfsb67 faldo:position ?thisPositionOn70 ; rdf:type faldo:ExactPosition . ?pfse68 faldo:position ?thisPositionOn71 ; rdf:type faldo:ExactPosition . ?ligand69 rdfs:subClassOf chebi:30616 . ?pfs72 up:annotation ?annotation73 . ?annotation73 faldo:begin ?pfsb74 ; faldo:end ?pfse75 ; up:ligand ?ligand76 ; rdf:type up:Binding_Site_Annotation . ?pfsb74 faldo:position ?thisPositionOn77 ; rdf:type faldo:ExactPosition . ?pfse75 faldo:position ?thisPositionOn78 ; rdf:type faldo:ExactPosition . ?ligand76 rdfs:subClassOf chebi:37563 . ?pfs79 up:annotation ?annotation80 . ?annotation80 faldo:begin ?pfsb81 ; faldo:end ?pfse82 ; up:ligand ?ligand83 ; rdf:type up:Binding_Site_Annotation . ?pfsb81 faldo:position ?thisPositionOn84 ; rdf:type faldo:ExactPosition . ?pfse82 faldo:position ?thisPositionOn85 ; rdf:type faldo:ExactPosition . ?ligand83 rdfs:subClassOf chebi:30616 . ?pfs86 up:annotation ?annotation87 . ?annotation87 faldo:begin ?pfsb88 ; faldo:end ?pfse89 ; up:ligand ?ligand90 ; rdf:type up:Binding_Site_Annotation . ?pfsb88 faldo:position ?thisPositionOn91 ; rdf:type faldo:ExactPosition . ?pfse89 faldo:position ?thisPositionOn92 ; rdf:type faldo:ExactPosition . ?ligand90 rdfs:subClassOf chebi:37563 . ?pfs93 up:annotation ?annotation94 . ?annotation94 faldo:begin ?pfsb95 ; faldo:end ?pfse96 ; up:ligand ?ligand97 ; rdf:type up:Binding_Site_Annotation . ?pfsb95 faldo:position ?thisPositionOn98 ; rdf:type faldo:ExactPosition . ?pfse96 faldo:position ?thisPositionOn99 ; rdf:type faldo:ExactPosition . ?ligand97 rdfs:subClassOf chebi:30616 . ?pfs100 up:annotation ?annotation101 . ?annotation101 faldo:begin ?pfsb102 ; faldo:end ?pfse103 ; up:ligand ?ligand104 ; rdf:type up:Binding_Site_Annotation . ?pfsb102 faldo:position ?thisPositionOn105 ; rdf:type faldo:ExactPosition . ?pfse103 faldo:position ?thisPositionOn106 ; rdf:type faldo:ExactPosition . ?ligand104 rdfs:subClassOf chebi:37563 . _:448514 a rdf:Statement ; up:attribution _:448472 ; rdf:subject ?this ; rdf:predicate up:recommendedName ; rdf:object ?name0 . _:448515 a rdf:Statement ; up:attribution _:448473 ; rdf:subject ?this ; rdf:predicate up:alternativeName ; rdf:object ?name1 . _:448516 a rdf:Statement ; up:attribution _:448474 ; rdf:subject ?this ; rdf:predicate up:alternativeName ; rdf:object ?name2 . _:448517 a rdf:Statement ; up:attribution _:448475 ; rdf:subject ?this ; rdf:predicate up:alternativeName ; rdf:object ?name3 . _:448518 a rdf:Statement ; up:attribution _:448476 ; rdf:subject ?this ; rdf:predicate up:alternativeName ; rdf:object ?name4 . _:448519 a rdf:Statement ; up:attribution _:448477 ; rdf:subject ?this ; rdf:predicate up:alternativeName ; rdf:object ?name5 . _:448520 a rdf:Statement ; up:attribution _:448478 ; rdf:subject ?gene6 ; rdf:predicate up:encodedBy ; rdf:object ?gene6 . _:448521 a rdf:Statement ; up:attribution _:448479 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation7 . _:448522 a rdf:Statement ; up:attribution _:448480 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation8 . _:448523 a rdf:Statement ; up:attribution _:448481 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation10 . _:448524 a rdf:Statement ; up:attribution _:448482 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation12 . _:448525 a rdf:Statement ; up:attribution _:448483 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation13 . _:448526 a rdf:Statement ; up:attribution _:448484 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation14 . _:448527 a rdf:Statement ; up:attribution _:448485 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation15 . _:448528 a rdf:Statement ; up:attribution _:448486 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:67 . _:448529 a rdf:Statement ; up:attribution _:448487 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:460 . _:448530 a rdf:Statement ; up:attribution _:448488 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:479 . _:448531 a rdf:Statement ; up:attribution _:448489 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:547 . _:448532 a rdf:Statement ; up:attribution _:448490 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:548 . _:448533 a rdf:Statement ; up:attribution _:448491 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:692 . _:448534 a rdf:Statement ; up:attribution _:448492 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:694 . _:448535 a rdf:Statement ; up:attribution _:448493 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:808 . _:448536 a rdf:Statement ; up:attribution _:448494 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:819 . _:448537 a rdf:Statement ; up:attribution _:448495 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object GO:0000049 . _:448538 a rdf:Statement ; up:attribution _:448496 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object GO:0000166 . _:448539 a rdf:Statement ; up:attribution _:448497 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object GO:0000287 . _:448540 a rdf:Statement ; up:attribution _:448498 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object GO:0004810 . _:448541 a rdf:Statement ; up:attribution _:448499 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object GO:0005524 . _:448542 a rdf:Statement ; up:attribution _:448500 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object GO:0001680 . _:448543 a rdf:Statement ; up:source unirule:MF_01264 ; rdf:subject ?pfs16 ; rdf:predicate up:annotation ; rdf:object ?annotation17 . _:448544 a rdf:Statement ; up:attribution _:448501 ; rdf:subject ?pfs16 ; rdf:predicate up:annotation ; rdf:object ?annotation17 . _:448545 a rdf:Statement ; up:source unirule:MF_01264 ; rdf:subject ?pfs23 ; rdf:predicate up:annotation ; rdf:object ?annotation24 . _:448546 a rdf:Statement ; up:attribution _:448502 ; rdf:subject ?pfs23 ; rdf:predicate up:annotation ; rdf:object ?annotation24 . _:448547 a rdf:Statement ; up:source unirule:MF_01264 ; rdf:subject ?pfs30 ; rdf:predicate up:annotation ; rdf:object ?annotation31 . _:448548 a rdf:Statement ; up:attribution _:448503 ; rdf:subject ?pfs30 ; rdf:predicate up:annotation ; rdf:object ?annotation31 . _:448549 a rdf:Statement ; up:source unirule:MF_01264 ; rdf:subject ?pfs37 ; rdf:predicate up:annotation ; rdf:object ?annotation38 . _:448550 a rdf:Statement ; up:attribution _:448504 ; rdf:subject ?pfs37 ; rdf:predicate up:annotation ; rdf:object ?annotation38 . _:448551 a rdf:Statement ; up:source unirule:MF_01264 ; rdf:subject ?pfs44 ; rdf:predicate up:annotation ; rdf:object ?annotation45 . _:448552 a rdf:Statement ; up:attribution _:448505 ; rdf:subject ?pfs44 ; rdf:predicate up:annotation ; rdf:object ?annotation45 . _:448553 a rdf:Statement ; up:source unirule:MF_01264 ; rdf:subject ?pfs51 ; rdf:predicate up:annotation ; rdf:object ?annotation52 . _:448554 a rdf:Statement ; up:attribution _:448506 ; rdf:subject ?pfs51 ; rdf:predicate up:annotation ; rdf:object ?annotation52 . _:448555 a rdf:Statement ; up:source unirule:MF_01264 ; rdf:subject ?pfs58 ; rdf:predicate up:annotation ; rdf:object ?annotation59 . _:448556 a rdf:Statement ; up:attribution _:448507 ; rdf:subject ?pfs58 ; rdf:predicate up:annotation ; rdf:object ?annotation59 . _:448557 a rdf:Statement ; up:source unirule:MF_01264 ; rdf:subject ?pfs65 ; rdf:predicate up:annotation ; rdf:object ?annotation66 . _:448558 a rdf:Statement ; up:attribution _:448508 ; rdf:subject ?pfs65 ; rdf:predicate up:annotation ; rdf:object ?annotation66 . _:448559 a rdf:Statement ; up:source unirule:MF_01264 ; rdf:subject ?pfs72 ; rdf:predicate up:annotation ; rdf:object ?annotation73 . _:448560 a rdf:Statement ; up:attribution _:448509 ; rdf:subject ?pfs72 ; rdf:predicate up:annotation ; rdf:object ?annotation73 . _:448561 a rdf:Statement ; up:source unirule:MF_01264 ; rdf:subject ?pfs79 ; rdf:predicate up:annotation ; rdf:object ?annotation80 . _:448562 a rdf:Statement ; up:attribution _:448510 ; rdf:subject ?pfs79 ; rdf:predicate up:annotation ; rdf:object ?annotation80 . _:448563 a rdf:Statement ; up:source unirule:MF_01264 ; rdf:subject ?pfs86 ; rdf:predicate up:annotation ; rdf:object ?annotation87 . _:448564 a rdf:Statement ; up:attribution _:448511 ; rdf:subject ?pfs86 ; rdf:predicate up:annotation ; rdf:object ?annotation87 . _:448565 a rdf:Statement ; up:source unirule:MF_01264 ; rdf:subject ?pfs93 ; rdf:predicate up:annotation ; rdf:object ?annotation94 . _:448566 a rdf:Statement ; up:attribution _:448512 ; rdf:subject ?pfs93 ; rdf:predicate up:annotation ; rdf:object ?annotation94 . _:448567 a rdf:Statement ; up:source unirule:MF_01264 ; rdf:subject ?pfs100 ; rdf:predicate up:annotation ; rdf:object ?annotation101 . _:448568 a rdf:Statement ; up:attribution _:448513 ; rdf:subject ?pfs100 ; rdf:predicate up:annotation ; rdf:object ?annotation101 . } WHERE { #baseURI: http://purl.uniprot.org/unirule/MF_01264 #Rule MF_01264 Created by:? on:2005-07-29 Modified by:Edouard de Castro on:2024-09-03 ?this up:organism ?thisOrganism ; rdfs:seeAlso signature:MF_01264 . ?thisOrganism rdfs:subClassOf+ taxon:2157 . BIND(URI(CONCAT(STR(?this), '#MF_01264a0')) AS ?name0) . BIND(URI(CONCAT(STR(?this), '#MF_01264a1')) AS ?name1) . BIND(URI(CONCAT(STR(?this), '#MF_01264a2')) AS ?name2) . BIND(URI(CONCAT(STR(?this), '#MF_01264a3')) AS ?name3) . BIND(URI(CONCAT(STR(?this), '#MF_01264a4')) AS ?name4) . BIND(URI(CONCAT(STR(?this), '#MF_01264a5')) AS ?name5) . BIND(URI(CONCAT(STR(?this), '#MF_01264a7')) AS ?annotation7) . BIND(URI(CONCAT(STR(?this), '#MF_01264a8')) AS ?annotation8) . BIND(URI(CONCAT(STR(?this), '#MF_01264a10')) AS ?annotation10) . BIND(URI(CONCAT(STR(?this), '#MF_01264a12')) AS ?annotation12) . BIND(URI(CONCAT(STR(?this), '#MF_01264a13')) AS ?annotation13) . BIND(URI(CONCAT(STR(?this), '#MF_01264a14')) AS ?annotation14) . BIND(URI(CONCAT(STR(?this), '#MF_01264a15')) AS ?annotation15) . OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch111 faldo:location ?templateMotifSequenceMatchRegionO28126112 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationO28126114 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarO28126MF_01264107 . ?templateMotifSequenceMatchRegionO28126112 faldo:begin ?templateMotifSequenceMatchBeginO28126113 . ?templateMotifSequenceMatchBeginO28126113 faldo:position ?templateMotifSequenceMatchBeginPositionO28126108 ; faldo:reference isoform:O28126-1 . ?templateMotifSequenceProfileAlignmentOperationO28126114 edam:has_input signature:MF_01264 ; rdf:type edam:operation_0300 . ?targetMotifMatch115 faldo:location ?targetMotifMatchRegionMatch116 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01264118 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarO28126MF_01264109 . ?targetMotifMatchRegionMatch116 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01264117 . ?targetMotifMatchRegionMatchBeginMF_01264117 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01264110 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_01264118 edam:has_input signature:MF_01264 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarO28126MF_01264107, 1, (STRLEN(?templateMotifCigarO28126MF_01264107) - STRLEN(REPLACE(?templateMotifCigarO28126MF_01264107, CONCAT('^(?:-*[^-]){', STR(((59 - ?templateMotifSequenceMatchBeginPositionO28126108) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1119) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarO28126MF_01264109, 1, (STRLEN(?targetMotifMatchCigarO28126MF_01264109) - STRLEN(REPLACE(?targetMotifMatchCigarO28126MF_01264109, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1119), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarO28126MF_01264109, 1, (STRLEN(?targetMotifMatchCigarO28126MF_01264109) - STRLEN(REPLACE(?targetMotifMatchCigarO28126MF_01264109, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1119), '}'), '')))), '[^-]', ''))) AS ?step2120) . BIND(((?step2120 + ?targetMotifMatchRegionMatchBeginPositionMF_01264110) - 1) AS ?thisPositionOn21) . BIND(?thisPositionOn21 AS ?thisPositionOn22) . BIND(?this AS ?pfs1t121) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn21))) AS ?pfsb18) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn22))) AS ?pfse19) . FILTER (REGEX('[DE]', SUBSTR(?thisSequenceValue, ?thisPositionOn21, 1))) . BIND(URI(CONCAT(STR(?this), '#MF_01264a17')) AS ?annotation17) . BIND(?this AS ?pfs16) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch126 faldo:location ?templateMotifSequenceMatchRegionO28126127 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationO28126129 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarO28126MF_01264122 . ?templateMotifSequenceMatchRegionO28126127 faldo:begin ?templateMotifSequenceMatchBeginO28126128 . ?templateMotifSequenceMatchBeginO28126128 faldo:position ?templateMotifSequenceMatchBeginPositionO28126123 ; faldo:reference isoform:O28126-1 . ?templateMotifSequenceProfileAlignmentOperationO28126129 edam:has_input signature:MF_01264 ; rdf:type edam:operation_0300 . ?targetMotifMatch130 faldo:location ?targetMotifMatchRegionMatch131 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01264133 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarO28126MF_01264124 . ?targetMotifMatchRegionMatch131 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01264132 . ?targetMotifMatchRegionMatchBeginMF_01264132 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01264125 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_01264133 edam:has_input signature:MF_01264 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarO28126MF_01264122, 1, (STRLEN(?templateMotifCigarO28126MF_01264122) - STRLEN(REPLACE(?templateMotifCigarO28126MF_01264122, CONCAT('^(?:-*[^-]){', STR(((61 - ?templateMotifSequenceMatchBeginPositionO28126123) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1134) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarO28126MF_01264124, 1, (STRLEN(?targetMotifMatchCigarO28126MF_01264124) - STRLEN(REPLACE(?targetMotifMatchCigarO28126MF_01264124, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1134), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarO28126MF_01264124, 1, (STRLEN(?targetMotifMatchCigarO28126MF_01264124) - STRLEN(REPLACE(?targetMotifMatchCigarO28126MF_01264124, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1134), '}'), '')))), '[^-]', ''))) AS ?step2135) . BIND(((?step2135 + ?targetMotifMatchRegionMatchBeginPositionMF_01264125) - 1) AS ?thisPositionOn28) . BIND(?thisPositionOn28 AS ?thisPositionOn29) . BIND(?this AS ?pfs1t136) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn28))) AS ?pfsb25) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn29))) AS ?pfse26) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn28, 1) = 'D')) . BIND(URI(CONCAT(STR(?this), '#MF_01264a24')) AS ?annotation24) . BIND(?this AS ?pfs23) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch141 faldo:location ?templateMotifSequenceMatchRegionO28126142 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationO28126144 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarO28126MF_01264137 . ?templateMotifSequenceMatchRegionO28126142 faldo:begin ?templateMotifSequenceMatchBeginO28126143 . ?templateMotifSequenceMatchBeginO28126143 faldo:position ?templateMotifSequenceMatchBeginPositionO28126138 ; faldo:reference isoform:O28126-1 . ?templateMotifSequenceProfileAlignmentOperationO28126144 edam:has_input signature:MF_01264 ; rdf:type edam:operation_0300 . ?targetMotifMatch145 faldo:location ?targetMotifMatchRegionMatch146 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01264148 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarO28126MF_01264139 . ?targetMotifMatchRegionMatch146 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01264147 . ?targetMotifMatchRegionMatchBeginMF_01264147 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01264140 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_01264148 edam:has_input signature:MF_01264 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarO28126MF_01264137, 1, (STRLEN(?templateMotifCigarO28126MF_01264137) - STRLEN(REPLACE(?templateMotifCigarO28126MF_01264137, CONCAT('^(?:-*[^-]){', STR(((110 - ?templateMotifSequenceMatchBeginPositionO28126138) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1149) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarO28126MF_01264139, 1, (STRLEN(?targetMotifMatchCigarO28126MF_01264139) - STRLEN(REPLACE(?targetMotifMatchCigarO28126MF_01264139, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1149), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarO28126MF_01264139, 1, (STRLEN(?targetMotifMatchCigarO28126MF_01264139) - STRLEN(REPLACE(?targetMotifMatchCigarO28126MF_01264139, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1149), '}'), '')))), '[^-]', ''))) AS ?step2150) . BIND(((?step2150 + ?targetMotifMatchRegionMatchBeginPositionMF_01264140) - 1) AS ?thisPositionOn35) . BIND(?thisPositionOn35 AS ?thisPositionOn36) . BIND(?this AS ?pfs1t151) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn35))) AS ?pfsb32) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn36))) AS ?pfse33) . FILTER (REGEX('[DE]', SUBSTR(?thisSequenceValue, ?thisPositionOn35, 1))) . BIND(URI(CONCAT(STR(?this), '#MF_01264a31')) AS ?annotation31) . BIND(?this AS ?pfs30) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch156 faldo:location ?templateMotifSequenceMatchRegionO28126157 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationO28126159 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarO28126MF_01264152 . ?templateMotifSequenceMatchRegionO28126157 faldo:begin ?templateMotifSequenceMatchBeginO28126158 . ?templateMotifSequenceMatchBeginO28126158 faldo:position ?templateMotifSequenceMatchBeginPositionO28126153 ; faldo:reference isoform:O28126-1 . ?templateMotifSequenceProfileAlignmentOperationO28126159 edam:has_input signature:MF_01264 ; rdf:type edam:operation_0300 . ?targetMotifMatch160 faldo:location ?targetMotifMatchRegionMatch161 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01264163 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarO28126MF_01264154 . ?targetMotifMatchRegionMatch161 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01264162 . ?targetMotifMatchRegionMatchBeginMF_01264162 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01264155 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_01264163 edam:has_input signature:MF_01264 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarO28126MF_01264152, 1, (STRLEN(?templateMotifCigarO28126MF_01264152) - STRLEN(REPLACE(?templateMotifCigarO28126MF_01264152, CONCAT('^(?:-*[^-]){', STR(((47 - ?templateMotifSequenceMatchBeginPositionO28126153) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1164) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarO28126MF_01264154, 1, (STRLEN(?targetMotifMatchCigarO28126MF_01264154) - STRLEN(REPLACE(?targetMotifMatchCigarO28126MF_01264154, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1164), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarO28126MF_01264154, 1, (STRLEN(?targetMotifMatchCigarO28126MF_01264154) - STRLEN(REPLACE(?targetMotifMatchCigarO28126MF_01264154, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1164), '}'), '')))), '[^-]', ''))) AS ?step2165) . BIND(((?step2165 + ?targetMotifMatchRegionMatchBeginPositionMF_01264155) - 1) AS ?thisPositionOn42) . BIND(?thisPositionOn42 AS ?thisPositionOn43) . BIND(?this AS ?pfs1t166) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn42))) AS ?pfsb39) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn43))) AS ?pfse40) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn42, 1) = 'S')) . BIND(URI(CONCAT(STR(?this), '#MF_01264a38')) AS ?annotation38) . BIND(?this AS ?pfs37) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch171 faldo:location ?templateMotifSequenceMatchRegionO28126172 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationO28126174 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarO28126MF_01264167 . ?templateMotifSequenceMatchRegionO28126172 faldo:begin ?templateMotifSequenceMatchBeginO28126173 . ?templateMotifSequenceMatchBeginO28126173 faldo:position ?templateMotifSequenceMatchBeginPositionO28126168 ; faldo:reference isoform:O28126-1 . ?templateMotifSequenceProfileAlignmentOperationO28126174 edam:has_input signature:MF_01264 ; rdf:type edam:operation_0300 . ?targetMotifMatch175 faldo:location ?targetMotifMatchRegionMatch176 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01264178 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarO28126MF_01264169 . ?targetMotifMatchRegionMatch176 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01264177 . ?targetMotifMatchRegionMatchBeginMF_01264177 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01264170 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_01264178 edam:has_input signature:MF_01264 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarO28126MF_01264167, 1, (STRLEN(?templateMotifCigarO28126MF_01264167) - STRLEN(REPLACE(?templateMotifCigarO28126MF_01264167, CONCAT('^(?:-*[^-]){', STR(((47 - ?templateMotifSequenceMatchBeginPositionO28126168) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1179) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarO28126MF_01264169, 1, (STRLEN(?targetMotifMatchCigarO28126MF_01264169) - STRLEN(REPLACE(?targetMotifMatchCigarO28126MF_01264169, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1179), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarO28126MF_01264169, 1, (STRLEN(?targetMotifMatchCigarO28126MF_01264169) - STRLEN(REPLACE(?targetMotifMatchCigarO28126MF_01264169, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1179), '}'), '')))), '[^-]', ''))) AS ?step2180) . BIND(((?step2180 + ?targetMotifMatchRegionMatchBeginPositionMF_01264170) - 1) AS ?thisPositionOn49) . BIND(?thisPositionOn49 AS ?thisPositionOn50) . BIND(?this AS ?pfs1t181) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn49))) AS ?pfsb46) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn50))) AS ?pfse47) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn49, 1) = 'S')) . BIND(URI(CONCAT(STR(?this), '#MF_01264a45')) AS ?annotation45) . BIND(?this AS ?pfs44) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch186 faldo:location ?templateMotifSequenceMatchRegionO28126187 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationO28126189 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarO28126MF_01264182 . ?templateMotifSequenceMatchRegionO28126187 faldo:begin ?templateMotifSequenceMatchBeginO28126188 . ?templateMotifSequenceMatchBeginO28126188 faldo:position ?templateMotifSequenceMatchBeginPositionO28126183 ; faldo:reference isoform:O28126-1 . ?templateMotifSequenceProfileAlignmentOperationO28126189 edam:has_input signature:MF_01264 ; rdf:type edam:operation_0300 . ?targetMotifMatch190 faldo:location ?targetMotifMatchRegionMatch191 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01264193 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarO28126MF_01264184 . ?targetMotifMatchRegionMatch191 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01264192 . ?targetMotifMatchRegionMatchBeginMF_01264192 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01264185 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_01264193 edam:has_input signature:MF_01264 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarO28126MF_01264182, 1, (STRLEN(?templateMotifCigarO28126MF_01264182) - STRLEN(REPLACE(?templateMotifCigarO28126MF_01264182, CONCAT('^(?:-*[^-]){', STR(((50 - ?templateMotifSequenceMatchBeginPositionO28126183) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1194) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarO28126MF_01264184, 1, (STRLEN(?targetMotifMatchCigarO28126MF_01264184) - STRLEN(REPLACE(?targetMotifMatchCigarO28126MF_01264184, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1194), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarO28126MF_01264184, 1, (STRLEN(?targetMotifMatchCigarO28126MF_01264184) - STRLEN(REPLACE(?targetMotifMatchCigarO28126MF_01264184, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1194), '}'), '')))), '[^-]', ''))) AS ?step2195) . BIND(((?step2195 + ?targetMotifMatchRegionMatchBeginPositionMF_01264185) - 1) AS ?thisPositionOn56) . BIND(?thisPositionOn56 AS ?thisPositionOn57) . BIND(?this AS ?pfs1t196) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn56))) AS ?pfsb53) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn57))) AS ?pfse54) . FILTER (REGEX('[RK]', SUBSTR(?thisSequenceValue, ?thisPositionOn56, 1))) . BIND(URI(CONCAT(STR(?this), '#MF_01264a52')) AS ?annotation52) . BIND(?this AS ?pfs51) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch201 faldo:location ?templateMotifSequenceMatchRegionO28126202 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationO28126204 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarO28126MF_01264197 . ?templateMotifSequenceMatchRegionO28126202 faldo:begin ?templateMotifSequenceMatchBeginO28126203 . ?templateMotifSequenceMatchBeginO28126203 faldo:position ?templateMotifSequenceMatchBeginPositionO28126198 ; faldo:reference isoform:O28126-1 . ?templateMotifSequenceProfileAlignmentOperationO28126204 edam:has_input signature:MF_01264 ; rdf:type edam:operation_0300 . ?targetMotifMatch205 faldo:location ?targetMotifMatchRegionMatch206 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01264208 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarO28126MF_01264199 . ?targetMotifMatchRegionMatch206 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01264207 . ?targetMotifMatchRegionMatchBeginMF_01264207 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01264200 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_01264208 edam:has_input signature:MF_01264 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarO28126MF_01264197, 1, (STRLEN(?templateMotifCigarO28126MF_01264197) - STRLEN(REPLACE(?templateMotifCigarO28126MF_01264197, CONCAT('^(?:-*[^-]){', STR(((50 - ?templateMotifSequenceMatchBeginPositionO28126198) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1209) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarO28126MF_01264199, 1, (STRLEN(?targetMotifMatchCigarO28126MF_01264199) - STRLEN(REPLACE(?targetMotifMatchCigarO28126MF_01264199, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1209), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarO28126MF_01264199, 1, (STRLEN(?targetMotifMatchCigarO28126MF_01264199) - STRLEN(REPLACE(?targetMotifMatchCigarO28126MF_01264199, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1209), '}'), '')))), '[^-]', ''))) AS ?step2210) . BIND(((?step2210 + ?targetMotifMatchRegionMatchBeginPositionMF_01264200) - 1) AS ?thisPositionOn63) . BIND(?thisPositionOn63 AS ?thisPositionOn64) . BIND(?this AS ?pfs1t211) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn63))) AS ?pfsb60) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn64))) AS ?pfse61) . FILTER (REGEX('[RK]', SUBSTR(?thisSequenceValue, ?thisPositionOn63, 1))) . BIND(URI(CONCAT(STR(?this), '#MF_01264a59')) AS ?annotation59) . BIND(?this AS ?pfs58) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch216 faldo:location ?templateMotifSequenceMatchRegionO28126217 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationO28126219 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarO28126MF_01264212 . ?templateMotifSequenceMatchRegionO28126217 faldo:begin ?templateMotifSequenceMatchBeginO28126218 . ?templateMotifSequenceMatchBeginO28126218 faldo:position ?templateMotifSequenceMatchBeginPositionO28126213 ; faldo:reference isoform:O28126-1 . ?templateMotifSequenceProfileAlignmentOperationO28126219 edam:has_input signature:MF_01264 ; rdf:type edam:operation_0300 . ?targetMotifMatch220 faldo:location ?targetMotifMatchRegionMatch221 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01264223 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarO28126MF_01264214 . ?targetMotifMatchRegionMatch221 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01264222 . ?targetMotifMatchRegionMatchBeginMF_01264222 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01264215 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_01264223 edam:has_input signature:MF_01264 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarO28126MF_01264212, 1, (STRLEN(?templateMotifCigarO28126MF_01264212) - STRLEN(REPLACE(?templateMotifCigarO28126MF_01264212, CONCAT('^(?:-*[^-]){', STR(((133 - ?templateMotifSequenceMatchBeginPositionO28126213) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1224) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarO28126MF_01264214, 1, (STRLEN(?targetMotifMatchCigarO28126MF_01264214) - STRLEN(REPLACE(?targetMotifMatchCigarO28126MF_01264214, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1224), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarO28126MF_01264214, 1, (STRLEN(?targetMotifMatchCigarO28126MF_01264214) - STRLEN(REPLACE(?targetMotifMatchCigarO28126MF_01264214, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1224), '}'), '')))), '[^-]', ''))) AS ?step2225) . BIND(((?step2225 + ?targetMotifMatchRegionMatchBeginPositionMF_01264215) - 1) AS ?thisPositionOn70) . BIND(?thisPositionOn70 AS ?thisPositionOn71) . BIND(?this AS ?pfs1t226) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn70))) AS ?pfsb67) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn71))) AS ?pfse68) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn70, 1) = 'H')) . BIND(URI(CONCAT(STR(?this), '#MF_01264a66')) AS ?annotation66) . BIND(?this AS ?pfs65) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch231 faldo:location ?templateMotifSequenceMatchRegionO28126232 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationO28126234 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarO28126MF_01264227 . ?templateMotifSequenceMatchRegionO28126232 faldo:begin ?templateMotifSequenceMatchBeginO28126233 . ?templateMotifSequenceMatchBeginO28126233 faldo:position ?templateMotifSequenceMatchBeginPositionO28126228 ; faldo:reference isoform:O28126-1 . ?templateMotifSequenceProfileAlignmentOperationO28126234 edam:has_input signature:MF_01264 ; rdf:type edam:operation_0300 . ?targetMotifMatch235 faldo:location ?targetMotifMatchRegionMatch236 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01264238 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarO28126MF_01264229 . ?targetMotifMatchRegionMatch236 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01264237 . ?targetMotifMatchRegionMatchBeginMF_01264237 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01264230 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_01264238 edam:has_input signature:MF_01264 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarO28126MF_01264227, 1, (STRLEN(?templateMotifCigarO28126MF_01264227) - STRLEN(REPLACE(?templateMotifCigarO28126MF_01264227, CONCAT('^(?:-*[^-]){', STR(((133 - ?templateMotifSequenceMatchBeginPositionO28126228) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1239) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarO28126MF_01264229, 1, (STRLEN(?targetMotifMatchCigarO28126MF_01264229) - STRLEN(REPLACE(?targetMotifMatchCigarO28126MF_01264229, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1239), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarO28126MF_01264229, 1, (STRLEN(?targetMotifMatchCigarO28126MF_01264229) - STRLEN(REPLACE(?targetMotifMatchCigarO28126MF_01264229, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1239), '}'), '')))), '[^-]', ''))) AS ?step2240) . BIND(((?step2240 + ?targetMotifMatchRegionMatchBeginPositionMF_01264230) - 1) AS ?thisPositionOn77) . BIND(?thisPositionOn77 AS ?thisPositionOn78) . BIND(?this AS ?pfs1t241) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn77))) AS ?pfsb74) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn78))) AS ?pfse75) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn77, 1) = 'H')) . BIND(URI(CONCAT(STR(?this), '#MF_01264a73')) AS ?annotation73) . BIND(?this AS ?pfs72) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch246 faldo:location ?templateMotifSequenceMatchRegionO28126247 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationO28126249 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarO28126MF_01264242 . ?templateMotifSequenceMatchRegionO28126247 faldo:begin ?templateMotifSequenceMatchBeginO28126248 . ?templateMotifSequenceMatchBeginO28126248 faldo:position ?templateMotifSequenceMatchBeginPositionO28126243 ; faldo:reference isoform:O28126-1 . ?templateMotifSequenceProfileAlignmentOperationO28126249 edam:has_input signature:MF_01264 ; rdf:type edam:operation_0300 . ?targetMotifMatch250 faldo:location ?targetMotifMatchRegionMatch251 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01264253 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarO28126MF_01264244 . ?targetMotifMatchRegionMatch251 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01264252 . ?targetMotifMatchRegionMatchBeginMF_01264252 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01264245 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_01264253 edam:has_input signature:MF_01264 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarO28126MF_01264242, 1, (STRLEN(?templateMotifCigarO28126MF_01264242) - STRLEN(REPLACE(?templateMotifCigarO28126MF_01264242, CONCAT('^(?:-*[^-]){', STR(((152 - ?templateMotifSequenceMatchBeginPositionO28126243) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1254) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarO28126MF_01264244, 1, (STRLEN(?targetMotifMatchCigarO28126MF_01264244) - STRLEN(REPLACE(?targetMotifMatchCigarO28126MF_01264244, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1254), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarO28126MF_01264244, 1, (STRLEN(?targetMotifMatchCigarO28126MF_01264244) - STRLEN(REPLACE(?targetMotifMatchCigarO28126MF_01264244, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1254), '}'), '')))), '[^-]', ''))) AS ?step2255) . BIND(((?step2255 + ?targetMotifMatchRegionMatchBeginPositionMF_01264245) - 1) AS ?thisPositionOn84) . BIND(?thisPositionOn84 AS ?thisPositionOn85) . BIND(?this AS ?pfs1t256) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn84))) AS ?pfsb81) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn85))) AS ?pfse82) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn84, 1) = 'K')) . BIND(URI(CONCAT(STR(?this), '#MF_01264a80')) AS ?annotation80) . BIND(?this AS ?pfs79) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch261 faldo:location ?templateMotifSequenceMatchRegionO28126262 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationO28126264 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarO28126MF_01264257 . ?templateMotifSequenceMatchRegionO28126262 faldo:begin ?templateMotifSequenceMatchBeginO28126263 . ?templateMotifSequenceMatchBeginO28126263 faldo:position ?templateMotifSequenceMatchBeginPositionO28126258 ; faldo:reference isoform:O28126-1 . ?templateMotifSequenceProfileAlignmentOperationO28126264 edam:has_input signature:MF_01264 ; rdf:type edam:operation_0300 . ?targetMotifMatch265 faldo:location ?targetMotifMatchRegionMatch266 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01264268 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarO28126MF_01264259 . ?targetMotifMatchRegionMatch266 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01264267 . ?targetMotifMatchRegionMatchBeginMF_01264267 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01264260 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_01264268 edam:has_input signature:MF_01264 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarO28126MF_01264257, 1, (STRLEN(?templateMotifCigarO28126MF_01264257) - STRLEN(REPLACE(?templateMotifCigarO28126MF_01264257, CONCAT('^(?:-*[^-]){', STR(((152 - ?templateMotifSequenceMatchBeginPositionO28126258) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1269) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarO28126MF_01264259, 1, (STRLEN(?targetMotifMatchCigarO28126MF_01264259) - STRLEN(REPLACE(?targetMotifMatchCigarO28126MF_01264259, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1269), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarO28126MF_01264259, 1, (STRLEN(?targetMotifMatchCigarO28126MF_01264259) - STRLEN(REPLACE(?targetMotifMatchCigarO28126MF_01264259, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1269), '}'), '')))), '[^-]', ''))) AS ?step2270) . BIND(((?step2270 + ?targetMotifMatchRegionMatchBeginPositionMF_01264260) - 1) AS ?thisPositionOn91) . BIND(?thisPositionOn91 AS ?thisPositionOn92) . BIND(?this AS ?pfs1t271) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn91))) AS ?pfsb88) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn92))) AS ?pfse89) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn91, 1) = 'K')) . BIND(URI(CONCAT(STR(?this), '#MF_01264a87')) AS ?annotation87) . BIND(?this AS ?pfs86) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch276 faldo:location ?templateMotifSequenceMatchRegionO28126277 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationO28126279 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarO28126MF_01264272 . ?templateMotifSequenceMatchRegionO28126277 faldo:begin ?templateMotifSequenceMatchBeginO28126278 . ?templateMotifSequenceMatchBeginO28126278 faldo:position ?templateMotifSequenceMatchBeginPositionO28126273 ; faldo:reference isoform:O28126-1 . ?templateMotifSequenceProfileAlignmentOperationO28126279 edam:has_input signature:MF_01264 ; rdf:type edam:operation_0300 . ?targetMotifMatch280 faldo:location ?targetMotifMatchRegionMatch281 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01264283 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarO28126MF_01264274 . ?targetMotifMatchRegionMatch281 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01264282 . ?targetMotifMatchRegionMatchBeginMF_01264282 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01264275 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_01264283 edam:has_input signature:MF_01264 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarO28126MF_01264272, 1, (STRLEN(?templateMotifCigarO28126MF_01264272) - STRLEN(REPLACE(?templateMotifCigarO28126MF_01264272, CONCAT('^(?:-*[^-]){', STR(((161 - ?templateMotifSequenceMatchBeginPositionO28126273) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1284) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarO28126MF_01264274, 1, (STRLEN(?targetMotifMatchCigarO28126MF_01264274) - STRLEN(REPLACE(?targetMotifMatchCigarO28126MF_01264274, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1284), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarO28126MF_01264274, 1, (STRLEN(?targetMotifMatchCigarO28126MF_01264274) - STRLEN(REPLACE(?targetMotifMatchCigarO28126MF_01264274, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1284), '}'), '')))), '[^-]', ''))) AS ?step2285) . BIND(((?step2285 + ?targetMotifMatchRegionMatchBeginPositionMF_01264275) - 1) AS ?thisPositionOn98) . BIND(?thisPositionOn98 AS ?thisPositionOn99) . BIND(?this AS ?pfs1t286) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn98))) AS ?pfsb95) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn99))) AS ?pfse96) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn98, 1) = 'Y')) . BIND(URI(CONCAT(STR(?this), '#MF_01264a94')) AS ?annotation94) . BIND(?this AS ?pfs93) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch291 faldo:location ?templateMotifSequenceMatchRegionO28126292 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationO28126294 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarO28126MF_01264287 . ?templateMotifSequenceMatchRegionO28126292 faldo:begin ?templateMotifSequenceMatchBeginO28126293 . ?templateMotifSequenceMatchBeginO28126293 faldo:position ?templateMotifSequenceMatchBeginPositionO28126288 ; faldo:reference isoform:O28126-1 . ?templateMotifSequenceProfileAlignmentOperationO28126294 edam:has_input signature:MF_01264 ; rdf:type edam:operation_0300 . ?targetMotifMatch295 faldo:location ?targetMotifMatchRegionMatch296 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01264298 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarO28126MF_01264289 . ?targetMotifMatchRegionMatch296 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01264297 . ?targetMotifMatchRegionMatchBeginMF_01264297 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01264290 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_01264298 edam:has_input signature:MF_01264 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarO28126MF_01264287, 1, (STRLEN(?templateMotifCigarO28126MF_01264287) - STRLEN(REPLACE(?templateMotifCigarO28126MF_01264287, CONCAT('^(?:-*[^-]){', STR(((161 - ?templateMotifSequenceMatchBeginPositionO28126288) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1299) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarO28126MF_01264289, 1, (STRLEN(?targetMotifMatchCigarO28126MF_01264289) - STRLEN(REPLACE(?targetMotifMatchCigarO28126MF_01264289, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1299), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarO28126MF_01264289, 1, (STRLEN(?targetMotifMatchCigarO28126MF_01264289) - STRLEN(REPLACE(?targetMotifMatchCigarO28126MF_01264289, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1299), '}'), '')))), '[^-]', ''))) AS ?step2300) . BIND(((?step2300 + ?targetMotifMatchRegionMatchBeginPositionMF_01264290) - 1) AS ?thisPositionOn105) . BIND(?thisPositionOn105 AS ?thisPositionOn106) . BIND(?this AS ?pfs1t301) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn105))) AS ?pfsb102) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn106))) AS ?pfse103) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn105, 1) = 'Y')) . BIND(URI(CONCAT(STR(?this), '#MF_01264a101')) AS ?annotation101) . BIND(?this AS ?pfs100) . } }