CONSTRUCT { _:450320 up:source unirule:MF_01281 . _:450321 up:source unirule:MF_01281 . _:450322 up:source unirule:MF_01281 . _:450323 up:source unirule:MF_01281 . _:450324 up:source unirule:MF_01281 . _:450325 up:source unirule:MF_01281 . _:450326 up:source unirule:MF_01281 . _:450327 up:source unirule:MF_01281 . _:450328 up:source unirule:MF_01281 . _:450329 up:source unirule:MF_01281 . _:450330 up:source unirule:MF_01281 . _:450331 up:source unirule:MF_01281 . _:450332 up:source unirule:MF_01281 . _:450333 up:source unirule:MF_01281 . _:450334 up:source unirule:MF_01281 . _:450335 up:source unirule:MF_01281 . _:450336 up:source unirule:MF_01281 . _:450337 up:source unirule:MF_01281 . _:450338 up:source unirule:MF_01281 . _:450339 up:source unirule:MF_01281 . _:450340 up:source unirule:MF_01281 . _:450341 up:source unirule:MF_01281 . _:450342 up:source unirule:MF_01281 . _:450343 up:source unirule:MF_01281 . _:450344 up:source unirule:MF_01281 . ?this up:annotation ?annotation0 , ?annotation1 ; up:classifiedWith keyword:378 , keyword:479 , keyword:862 . ?annotation0 up:cofactor chebi:29105 ; rdf:type up:Cofactor_Annotation ; rdfs:comment 'Binds 1 zinc ion per subunit.' . ?annotation1 a up:Similarity_Annotation ; rdfs:comment 'Belongs to the metallo-dependent hydrolases superfamily. MTA/SAH deaminase family.' . ?case2 up:alternativeName ?name4 , ?name5 , ?name6 ; up:classifiedWith GO:0004000 , GO:0006556 , GO:0090613 ; up:recommendedName ?name3 . ?name3 up:ecName '3.5.4.41' ; up:fullName "5'-deoxyadenosine deaminase" ; up:shortName "5'-dA deaminase" ; rdf:type up:Structured_Name . ?name4 up:ecName '3.5.4.31' ; up:fullName "5'-methylthioadenosine deaminase" ; up:shortName 'MTA deaminase' ; rdf:type up:Structured_Name . ?name5 up:ecName '3.5.4.4' ; up:fullName 'Adenosine deaminase' ; rdf:type up:Structured_Name . ?name6 up:ecName '3.5.4.28' ; up:fullName 'S-adenosylhomocysteine deaminase' ; up:shortName 'SAH deaminase' ; rdf:type up:Structured_Name . ?case7 up:classifiedWith GO:0050270 , GO:0090614 ; up:recommendedName ?name8 . ?name8 up:ecName '3.5.4.28' , '3.5.4.31' ; up:fullName '5-methylthioadenosine/S-adenosylhomocysteine deaminase' ; up:shortName 'MTA/SAH deaminase' ; rdf:type up:Structured_Name . ?pfs9 up:annotation ?annotation10 . ?annotation10 faldo:begin ?pfsb11 ; faldo:end ?pfse12 ; up:ligand ?ligand13 ; rdf:type up:Binding_Site_Annotation . ?pfsb11 faldo:position ?thisPositionOn14 ; rdf:type faldo:ExactPosition . ?pfse12 faldo:position ?thisPositionOn15 ; rdf:type faldo:ExactPosition . ?ligand13 rdfs:subClassOf chebi:29105 . ?pfs16 up:annotation ?annotation17 . ?annotation17 faldo:begin ?pfsb18 ; faldo:end ?pfse19 ; up:ligand ?ligand20 ; rdf:type up:Binding_Site_Annotation . ?pfsb18 faldo:position ?thisPositionOn21 ; rdf:type faldo:ExactPosition . ?pfse19 faldo:position ?thisPositionOn22 ; rdf:type faldo:ExactPosition . ?ligand20 rdfs:subClassOf chebi:29105 . ?pfs23 up:annotation ?annotation24 . ?annotation24 faldo:begin ?pfsb25 ; faldo:end ?pfse26 ; up:ligand ?ligand27 ; rdf:type up:Binding_Site_Annotation . ?pfsb25 faldo:position ?thisPositionOn28 ; rdf:type faldo:ExactPosition . ?pfse26 faldo:position ?thisPositionOn29 ; rdf:type faldo:ExactPosition . ?ligand27 rdfs:subClassOf chebi:29105 . ?pfs30 up:annotation ?annotation31 . ?annotation31 faldo:begin ?pfsb32 ; faldo:end ?pfse33 ; up:ligand ?ligand34 ; rdf:type up:Binding_Site_Annotation . ?pfsb32 faldo:position ?thisPositionOn35 ; rdf:type faldo:ExactPosition . ?pfse33 faldo:position ?thisPositionOn36 ; rdf:type faldo:ExactPosition . ?ligand34 rdfs:subClassOf chebi:29105 . ?pfs37 up:annotation ?annotation38 . ?annotation38 faldo:begin ?pfsb39 ; faldo:end ?pfse40 ; up:ligand ?ligand41 ; rdf:type up:Binding_Site_Annotation . ?pfsb39 faldo:position ?thisPositionOn43 ; rdf:type faldo:ExactPosition . ?pfse40 faldo:position ?thisPositionOn44 ; rdf:type faldo:ExactPosition . ?ligand41 rdfs:subClassOf ?molecule42 . ?molecule42 rdfs:label 'substrate' . ?pfs45 up:annotation ?annotation46 . ?annotation46 faldo:begin ?pfsb47 ; faldo:end ?pfse48 ; up:ligand ?ligand49 ; rdf:type up:Binding_Site_Annotation . ?pfsb47 faldo:position ?thisPositionOn51 ; rdf:type faldo:ExactPosition . ?pfse48 faldo:position ?thisPositionOn52 ; rdf:type faldo:ExactPosition . ?ligand49 rdfs:subClassOf ?molecule50 . ?molecule50 rdfs:label 'substrate' . ?pfs53 up:annotation ?annotation54 . ?annotation54 faldo:begin ?pfsb55 ; faldo:end ?pfse56 ; up:ligand ?ligand57 ; rdf:type up:Binding_Site_Annotation . ?pfsb55 faldo:position ?thisPositionOn59 ; rdf:type faldo:ExactPosition . ?pfse56 faldo:position ?thisPositionOn60 ; rdf:type faldo:ExactPosition . ?ligand57 rdfs:subClassOf ?molecule58 . ?molecule58 rdfs:label 'substrate' . ?pfs61 up:annotation ?annotation62 . ?annotation62 faldo:begin ?pfsb63 ; faldo:end ?pfse64 ; up:ligand ?ligand65 ; rdf:type up:Binding_Site_Annotation . ?pfsb63 faldo:position ?thisPositionOn67 ; rdf:type faldo:ExactPosition . ?pfse64 faldo:position ?thisPositionOn68 ; rdf:type faldo:ExactPosition . ?ligand65 rdfs:subClassOf ?molecule66 . ?molecule66 rdfs:label 'substrate' . ?pfs69 up:annotation ?annotation70 . ?annotation70 faldo:begin ?pfsb71 ; faldo:end ?pfse72 ; up:ligand ?ligand73 ; rdf:type up:Binding_Site_Annotation . ?pfsb71 faldo:position ?thisPositionOn75 ; rdf:type faldo:ExactPosition . ?pfse72 faldo:position ?thisPositionOn76 ; rdf:type faldo:ExactPosition . ?ligand73 rdfs:subClassOf ?molecule74 . ?molecule74 rdfs:label 'substrate' . ?pfs77 up:annotation ?annotation78 . ?annotation78 faldo:begin ?pfsb79 ; faldo:end ?pfse80 ; up:ligand ?ligand81 ; rdf:type up:Binding_Site_Annotation . ?pfsb79 faldo:position ?thisPositionOn83 ; rdf:type faldo:ExactPosition . ?pfse80 faldo:position ?thisPositionOn84 ; rdf:type faldo:ExactPosition . ?ligand81 rdfs:subClassOf ?molecule82 . ?molecule82 rdfs:label 'substrate' . _:450345 a rdf:Statement ; up:attribution _:450320 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation0 . _:450346 a rdf:Statement ; up:attribution _:450321 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation1 . _:450347 a rdf:Statement ; up:attribution _:450322 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:378 . _:450348 a rdf:Statement ; up:attribution _:450323 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:479 . _:450349 a rdf:Statement ; up:attribution _:450324 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:862 . _:450350 a rdf:Statement ; up:attribution _:450325 ; rdf:subject ?case2 ; rdf:predicate up:recommendedName ; rdf:object ?name3 . _:450351 a rdf:Statement ; up:attribution _:450326 ; rdf:subject ?case2 ; rdf:predicate up:alternativeName ; rdf:object ?name4 . _:450352 a rdf:Statement ; up:attribution _:450327 ; rdf:subject ?case2 ; rdf:predicate up:alternativeName ; rdf:object ?name5 . _:450353 a rdf:Statement ; up:attribution _:450328 ; rdf:subject ?case2 ; rdf:predicate up:alternativeName ; rdf:object ?name6 . _:450354 a rdf:Statement ; up:attribution _:450329 ; rdf:subject ?case2 ; rdf:predicate up:classifiedWith ; rdf:object GO:0090613 . _:450355 a rdf:Statement ; up:attribution _:450330 ; rdf:subject ?case2 ; rdf:predicate up:classifiedWith ; rdf:object GO:0004000 . _:450356 a rdf:Statement ; up:attribution _:450331 ; rdf:subject ?case2 ; rdf:predicate up:classifiedWith ; rdf:object GO:0006556 . _:450357 a rdf:Statement ; up:attribution _:450332 ; rdf:subject ?case7 ; rdf:predicate up:recommendedName ; rdf:object ?name8 . _:450358 a rdf:Statement ; up:attribution _:450333 ; rdf:subject ?case7 ; rdf:predicate up:classifiedWith ; rdf:object GO:0050270 . _:450359 a rdf:Statement ; up:attribution _:450334 ; rdf:subject ?case7 ; rdf:predicate up:classifiedWith ; rdf:object GO:0090614 . _:450360 a rdf:Statement ; up:source unirule:MF_01281 ; rdf:subject ?pfs9 ; rdf:predicate up:annotation ; rdf:object ?annotation10 . _:450361 a rdf:Statement ; up:attribution _:450335 ; rdf:subject ?pfs9 ; rdf:predicate up:annotation ; rdf:object ?annotation10 . _:450362 a rdf:Statement ; up:source unirule:MF_01281 ; rdf:subject ?pfs16 ; rdf:predicate up:annotation ; rdf:object ?annotation17 . _:450363 a rdf:Statement ; up:attribution _:450336 ; rdf:subject ?pfs16 ; rdf:predicate up:annotation ; rdf:object ?annotation17 . _:450364 a rdf:Statement ; up:source unirule:MF_01281 ; rdf:subject ?pfs23 ; rdf:predicate up:annotation ; rdf:object ?annotation24 . _:450365 a rdf:Statement ; up:attribution _:450337 ; rdf:subject ?pfs23 ; rdf:predicate up:annotation ; rdf:object ?annotation24 . _:450366 a rdf:Statement ; up:source unirule:MF_01281 ; rdf:subject ?pfs30 ; rdf:predicate up:annotation ; rdf:object ?annotation31 . _:450367 a rdf:Statement ; up:attribution _:450338 ; rdf:subject ?pfs30 ; rdf:predicate up:annotation ; rdf:object ?annotation31 . _:450368 a rdf:Statement ; up:source unirule:MF_01281 ; rdf:subject ?pfs37 ; rdf:predicate up:annotation ; rdf:object ?annotation38 . _:450369 a rdf:Statement ; up:attribution _:450339 ; rdf:subject ?pfs37 ; rdf:predicate up:annotation ; rdf:object ?annotation38 . _:450370 a rdf:Statement ; up:source unirule:MF_01281 ; rdf:subject ?pfs45 ; rdf:predicate up:annotation ; rdf:object ?annotation46 . _:450371 a rdf:Statement ; up:attribution _:450340 ; rdf:subject ?pfs45 ; rdf:predicate up:annotation ; rdf:object ?annotation46 . _:450372 a rdf:Statement ; up:source unirule:MF_01281 ; rdf:subject ?pfs53 ; rdf:predicate up:annotation ; rdf:object ?annotation54 . _:450373 a rdf:Statement ; up:attribution _:450341 ; rdf:subject ?pfs53 ; rdf:predicate up:annotation ; rdf:object ?annotation54 . _:450374 a rdf:Statement ; up:source unirule:MF_01281 ; rdf:subject ?pfs61 ; rdf:predicate up:annotation ; rdf:object ?annotation62 . _:450375 a rdf:Statement ; up:attribution _:450342 ; rdf:subject ?pfs61 ; rdf:predicate up:annotation ; rdf:object ?annotation62 . _:450376 a rdf:Statement ; up:source unirule:MF_01281 ; rdf:subject ?pfs69 ; rdf:predicate up:annotation ; rdf:object ?annotation70 . _:450377 a rdf:Statement ; up:attribution _:450343 ; rdf:subject ?pfs69 ; rdf:predicate up:annotation ; rdf:object ?annotation70 . _:450378 a rdf:Statement ; up:source unirule:MF_01281 ; rdf:subject ?pfs77 ; rdf:predicate up:annotation ; rdf:object ?annotation78 . _:450379 a rdf:Statement ; up:attribution _:450344 ; rdf:subject ?pfs77 ; rdf:predicate up:annotation ; rdf:object ?annotation78 . } WHERE { #baseURI: http://purl.uniprot.org/unirule/MF_01281 #Rule MF_01281 Created by:coudert on:2007-11-07 Modified by:crivoire on:2024-02-15 VALUES ?supertaxon85 {taxon:2 taxon:2157} ?this up:organism ?thisOrganism ; rdfs:seeAlso signature:MF_01281 . ?thisOrganism rdfs:subClassOf+ ?supertaxon85 . BIND(URI(CONCAT(STR(?this), '#MF_01281a0')) AS ?annotation0) . BIND(URI(CONCAT(STR(?this), '#MF_01281a1')) AS ?annotation1) . OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch90 faldo:location ?templateMotifSequenceMatchRegionQ9X03491 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ9X03493 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarQ9X034MF_0128186 . ?templateMotifSequenceMatchRegionQ9X03491 faldo:begin ?templateMotifSequenceMatchBeginQ9X03492 . ?templateMotifSequenceMatchBeginQ9X03492 faldo:position ?templateMotifSequenceMatchBeginPositionQ9X03487 ; faldo:reference isoform:Q9X034-1 . ?templateMotifSequenceProfileAlignmentOperationQ9X03493 edam:has_input signature:MF_01281 ; rdf:type edam:operation_0300 . ?targetMotifMatch94 faldo:location ?targetMotifMatchRegionMatch95 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0128197 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarQ9X034MF_0128188 . ?targetMotifMatchRegionMatch95 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0128196 . ?targetMotifMatchRegionMatchBeginMF_0128196 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0128189 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_0128197 edam:has_input signature:MF_01281 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ9X034MF_0128186, 1, (STRLEN(?templateMotifCigarQ9X034MF_0128186) - STRLEN(REPLACE(?templateMotifCigarQ9X034MF_0128186, CONCAT('^(?:-*[^-]){', STR(((55 - ?templateMotifSequenceMatchBeginPositionQ9X03487) + 1)), '}'), '')))), '[a-z]', '')) AS ?step198) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ9X034MF_0128188, 1, (STRLEN(?targetMotifMatchCigarQ9X034MF_0128188) - STRLEN(REPLACE(?targetMotifMatchCigarQ9X034MF_0128188, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step198), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ9X034MF_0128188, 1, (STRLEN(?targetMotifMatchCigarQ9X034MF_0128188) - STRLEN(REPLACE(?targetMotifMatchCigarQ9X034MF_0128188, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step198), '}'), '')))), '[^-]', ''))) AS ?step299) . BIND(((?step299 + ?targetMotifMatchRegionMatchBeginPositionMF_0128189) - 1) AS ?thisPositionOn14) . BIND(?thisPositionOn14 AS ?thisPositionOn15) . BIND(?this AS ?pfs1t100) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn14))) AS ?pfsb11) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn15))) AS ?pfse12) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn14, 1) = 'H')) . BIND(URI(CONCAT(STR(?this), '#MF_01281a10')) AS ?annotation10) . BIND(?this AS ?pfs9) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch105 faldo:location ?templateMotifSequenceMatchRegionQ9X034106 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ9X034108 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarQ9X034MF_01281101 . ?templateMotifSequenceMatchRegionQ9X034106 faldo:begin ?templateMotifSequenceMatchBeginQ9X034107 . ?templateMotifSequenceMatchBeginQ9X034107 faldo:position ?templateMotifSequenceMatchBeginPositionQ9X034102 ; faldo:reference isoform:Q9X034-1 . ?templateMotifSequenceProfileAlignmentOperationQ9X034108 edam:has_input signature:MF_01281 ; rdf:type edam:operation_0300 . ?targetMotifMatch109 faldo:location ?targetMotifMatchRegionMatch110 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01281112 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarQ9X034MF_01281103 . ?targetMotifMatchRegionMatch110 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01281111 . ?targetMotifMatchRegionMatchBeginMF_01281111 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01281104 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_01281112 edam:has_input signature:MF_01281 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ9X034MF_01281101, 1, (STRLEN(?templateMotifCigarQ9X034MF_01281101) - STRLEN(REPLACE(?templateMotifCigarQ9X034MF_01281101, CONCAT('^(?:-*[^-]){', STR(((57 - ?templateMotifSequenceMatchBeginPositionQ9X034102) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1113) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ9X034MF_01281103, 1, (STRLEN(?targetMotifMatchCigarQ9X034MF_01281103) - STRLEN(REPLACE(?targetMotifMatchCigarQ9X034MF_01281103, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1113), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ9X034MF_01281103, 1, (STRLEN(?targetMotifMatchCigarQ9X034MF_01281103) - STRLEN(REPLACE(?targetMotifMatchCigarQ9X034MF_01281103, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1113), '}'), '')))), '[^-]', ''))) AS ?step2114) . BIND(((?step2114 + ?targetMotifMatchRegionMatchBeginPositionMF_01281104) - 1) AS ?thisPositionOn21) . BIND(?thisPositionOn21 AS ?thisPositionOn22) . BIND(?this AS ?pfs1t115) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn21))) AS ?pfsb18) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn22))) AS ?pfse19) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn21, 1) = 'H')) . BIND(URI(CONCAT(STR(?this), '#MF_01281a17')) AS ?annotation17) . BIND(?this AS ?pfs16) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch120 faldo:location ?templateMotifSequenceMatchRegionQ9X034121 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ9X034123 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarQ9X034MF_01281116 . ?templateMotifSequenceMatchRegionQ9X034121 faldo:begin ?templateMotifSequenceMatchBeginQ9X034122 . ?templateMotifSequenceMatchBeginQ9X034122 faldo:position ?templateMotifSequenceMatchBeginPositionQ9X034117 ; faldo:reference isoform:Q9X034-1 . ?templateMotifSequenceProfileAlignmentOperationQ9X034123 edam:has_input signature:MF_01281 ; rdf:type edam:operation_0300 . ?targetMotifMatch124 faldo:location ?targetMotifMatchRegionMatch125 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01281127 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarQ9X034MF_01281118 . ?targetMotifMatchRegionMatch125 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01281126 . ?targetMotifMatchRegionMatchBeginMF_01281126 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01281119 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_01281127 edam:has_input signature:MF_01281 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ9X034MF_01281116, 1, (STRLEN(?templateMotifCigarQ9X034MF_01281116) - STRLEN(REPLACE(?templateMotifCigarQ9X034MF_01281116, CONCAT('^(?:-*[^-]){', STR(((200 - ?templateMotifSequenceMatchBeginPositionQ9X034117) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1128) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ9X034MF_01281118, 1, (STRLEN(?targetMotifMatchCigarQ9X034MF_01281118) - STRLEN(REPLACE(?targetMotifMatchCigarQ9X034MF_01281118, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1128), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ9X034MF_01281118, 1, (STRLEN(?targetMotifMatchCigarQ9X034MF_01281118) - STRLEN(REPLACE(?targetMotifMatchCigarQ9X034MF_01281118, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1128), '}'), '')))), '[^-]', ''))) AS ?step2129) . BIND(((?step2129 + ?targetMotifMatchRegionMatchBeginPositionMF_01281119) - 1) AS ?thisPositionOn28) . BIND(?thisPositionOn28 AS ?thisPositionOn29) . BIND(?this AS ?pfs1t130) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn28))) AS ?pfsb25) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn29))) AS ?pfse26) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn28, 1) = 'H')) . BIND(URI(CONCAT(STR(?this), '#MF_01281a24')) AS ?annotation24) . BIND(?this AS ?pfs23) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch135 faldo:location ?templateMotifSequenceMatchRegionQ9X034136 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ9X034138 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarQ9X034MF_01281131 . ?templateMotifSequenceMatchRegionQ9X034136 faldo:begin ?templateMotifSequenceMatchBeginQ9X034137 . ?templateMotifSequenceMatchBeginQ9X034137 faldo:position ?templateMotifSequenceMatchBeginPositionQ9X034132 ; faldo:reference isoform:Q9X034-1 . ?templateMotifSequenceProfileAlignmentOperationQ9X034138 edam:has_input signature:MF_01281 ; rdf:type edam:operation_0300 . ?targetMotifMatch139 faldo:location ?targetMotifMatchRegionMatch140 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01281142 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarQ9X034MF_01281133 . ?targetMotifMatchRegionMatch140 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01281141 . ?targetMotifMatchRegionMatchBeginMF_01281141 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01281134 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_01281142 edam:has_input signature:MF_01281 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ9X034MF_01281131, 1, (STRLEN(?templateMotifCigarQ9X034MF_01281131) - STRLEN(REPLACE(?templateMotifCigarQ9X034MF_01281131, CONCAT('^(?:-*[^-]){', STR(((279 - ?templateMotifSequenceMatchBeginPositionQ9X034132) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1143) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ9X034MF_01281133, 1, (STRLEN(?targetMotifMatchCigarQ9X034MF_01281133) - STRLEN(REPLACE(?targetMotifMatchCigarQ9X034MF_01281133, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1143), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ9X034MF_01281133, 1, (STRLEN(?targetMotifMatchCigarQ9X034MF_01281133) - STRLEN(REPLACE(?targetMotifMatchCigarQ9X034MF_01281133, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1143), '}'), '')))), '[^-]', ''))) AS ?step2144) . BIND(((?step2144 + ?targetMotifMatchRegionMatchBeginPositionMF_01281134) - 1) AS ?thisPositionOn35) . BIND(?thisPositionOn35 AS ?thisPositionOn36) . BIND(?this AS ?pfs1t145) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn35))) AS ?pfsb32) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn36))) AS ?pfse33) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn35, 1) = 'D')) . BIND(URI(CONCAT(STR(?this), '#MF_01281a31')) AS ?annotation31) . BIND(?this AS ?pfs30) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch150 faldo:location ?templateMotifSequenceMatchRegionQ9X034151 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ9X034153 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarQ9X034MF_01281146 . ?templateMotifSequenceMatchRegionQ9X034151 faldo:begin ?templateMotifSequenceMatchBeginQ9X034152 . ?templateMotifSequenceMatchBeginQ9X034152 faldo:position ?templateMotifSequenceMatchBeginPositionQ9X034147 ; faldo:reference isoform:Q9X034-1 . ?templateMotifSequenceProfileAlignmentOperationQ9X034153 edam:has_input signature:MF_01281 ; rdf:type edam:operation_0300 . ?targetMotifMatch154 faldo:location ?targetMotifMatchRegionMatch155 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01281157 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarQ9X034MF_01281148 . ?targetMotifMatchRegionMatch155 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01281156 . ?targetMotifMatchRegionMatchBeginMF_01281156 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01281149 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_01281157 edam:has_input signature:MF_01281 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ9X034MF_01281146, 1, (STRLEN(?templateMotifCigarQ9X034MF_01281146) - STRLEN(REPLACE(?templateMotifCigarQ9X034MF_01281146, CONCAT('^(?:-*[^-]){', STR(((84 - ?templateMotifSequenceMatchBeginPositionQ9X034147) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1158) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ9X034MF_01281148, 1, (STRLEN(?targetMotifMatchCigarQ9X034MF_01281148) - STRLEN(REPLACE(?targetMotifMatchCigarQ9X034MF_01281148, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1158), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ9X034MF_01281148, 1, (STRLEN(?targetMotifMatchCigarQ9X034MF_01281148) - STRLEN(REPLACE(?targetMotifMatchCigarQ9X034MF_01281148, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1158), '}'), '')))), '[^-]', ''))) AS ?step2159) . BIND(((?step2159 + ?targetMotifMatchRegionMatchBeginPositionMF_01281149) - 1) AS ?thisPositionOn43) . BIND(?thisPositionOn43 AS ?thisPositionOn44) . BIND(?this AS ?pfs1t160) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn43))) AS ?pfsb39) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn44))) AS ?pfse40) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn43, 1) = 'E')) . BIND(URI(CONCAT(STR(?this), '#MF_01281a38')) AS ?annotation38) . BIND(?this AS ?pfs37) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch165 faldo:location ?templateMotifSequenceMatchRegionQ9X034166 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ9X034168 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarQ9X034MF_01281161 . ?templateMotifSequenceMatchRegionQ9X034166 faldo:begin ?templateMotifSequenceMatchBeginQ9X034167 . ?templateMotifSequenceMatchBeginQ9X034167 faldo:position ?templateMotifSequenceMatchBeginPositionQ9X034162 ; faldo:reference isoform:Q9X034-1 . ?templateMotifSequenceProfileAlignmentOperationQ9X034168 edam:has_input signature:MF_01281 ; rdf:type edam:operation_0300 . ?targetMotifMatch169 faldo:location ?targetMotifMatchRegionMatch170 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01281172 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarQ9X034MF_01281163 . ?targetMotifMatchRegionMatch170 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01281171 . ?targetMotifMatchRegionMatchBeginMF_01281171 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01281164 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_01281172 edam:has_input signature:MF_01281 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ9X034MF_01281161, 1, (STRLEN(?templateMotifCigarQ9X034MF_01281161) - STRLEN(REPLACE(?templateMotifCigarQ9X034MF_01281161, CONCAT('^(?:-*[^-]){', STR(((136 - ?templateMotifSequenceMatchBeginPositionQ9X034162) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1173) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ9X034MF_01281163, 1, (STRLEN(?targetMotifMatchCigarQ9X034MF_01281163) - STRLEN(REPLACE(?targetMotifMatchCigarQ9X034MF_01281163, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1173), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ9X034MF_01281163, 1, (STRLEN(?targetMotifMatchCigarQ9X034MF_01281163) - STRLEN(REPLACE(?targetMotifMatchCigarQ9X034MF_01281163, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1173), '}'), '')))), '[^-]', ''))) AS ?step2174) . BIND(((?step2174 + ?targetMotifMatchRegionMatchBeginPositionMF_01281164) - 1) AS ?thisPositionOn51) . BIND(?thisPositionOn51 AS ?thisPositionOn52) . BIND(?this AS ?pfs1t175) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn51))) AS ?pfsb47) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn52))) AS ?pfse48) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn51, 1) = 'R')) . BIND(URI(CONCAT(STR(?this), '#MF_01281a46')) AS ?annotation46) . BIND(?this AS ?pfs45) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch180 faldo:location ?templateMotifSequenceMatchRegionQ9X034181 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ9X034183 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarQ9X034MF_01281176 . ?templateMotifSequenceMatchRegionQ9X034181 faldo:begin ?templateMotifSequenceMatchBeginQ9X034182 . ?templateMotifSequenceMatchBeginQ9X034182 faldo:position ?templateMotifSequenceMatchBeginPositionQ9X034177 ; faldo:reference isoform:Q9X034-1 . ?templateMotifSequenceProfileAlignmentOperationQ9X034183 edam:has_input signature:MF_01281 ; rdf:type edam:operation_0300 . ?targetMotifMatch184 faldo:location ?targetMotifMatchRegionMatch185 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01281187 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarQ9X034MF_01281178 . ?targetMotifMatchRegionMatch185 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01281186 . ?targetMotifMatchRegionMatchBeginMF_01281186 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01281179 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_01281187 edam:has_input signature:MF_01281 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ9X034MF_01281176, 1, (STRLEN(?templateMotifCigarQ9X034MF_01281176) - STRLEN(REPLACE(?templateMotifCigarQ9X034MF_01281176, CONCAT('^(?:-*[^-]){', STR(((148 - ?templateMotifSequenceMatchBeginPositionQ9X034177) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1188) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ9X034MF_01281178, 1, (STRLEN(?targetMotifMatchCigarQ9X034MF_01281178) - STRLEN(REPLACE(?targetMotifMatchCigarQ9X034MF_01281178, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1188), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ9X034MF_01281178, 1, (STRLEN(?targetMotifMatchCigarQ9X034MF_01281178) - STRLEN(REPLACE(?targetMotifMatchCigarQ9X034MF_01281178, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1188), '}'), '')))), '[^-]', ''))) AS ?step2189) . BIND(((?step2189 + ?targetMotifMatchRegionMatchBeginPositionMF_01281179) - 1) AS ?thisPositionOn59) . BIND(?thisPositionOn59 AS ?thisPositionOn60) . BIND(?this AS ?pfs1t190) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn59))) AS ?pfsb55) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn60))) AS ?pfse56) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn59, 1) = 'R')) . BIND(URI(CONCAT(STR(?this), '#MF_01281a54')) AS ?annotation54) . BIND(?this AS ?pfs53) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch195 faldo:location ?templateMotifSequenceMatchRegionQ9X034196 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ9X034198 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarQ9X034MF_01281191 . ?templateMotifSequenceMatchRegionQ9X034196 faldo:begin ?templateMotifSequenceMatchBeginQ9X034197 . ?templateMotifSequenceMatchBeginQ9X034197 faldo:position ?templateMotifSequenceMatchBeginPositionQ9X034192 ; faldo:reference isoform:Q9X034-1 . ?templateMotifSequenceProfileAlignmentOperationQ9X034198 edam:has_input signature:MF_01281 ; rdf:type edam:operation_0300 . ?targetMotifMatch199 faldo:location ?targetMotifMatchRegionMatch200 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01281202 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarQ9X034MF_01281193 . ?targetMotifMatchRegionMatch200 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01281201 . ?targetMotifMatchRegionMatchBeginMF_01281201 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01281194 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_01281202 edam:has_input signature:MF_01281 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ9X034MF_01281191, 1, (STRLEN(?templateMotifCigarQ9X034MF_01281191) - STRLEN(REPLACE(?templateMotifCigarQ9X034MF_01281191, CONCAT('^(?:-*[^-]){', STR(((173 - ?templateMotifSequenceMatchBeginPositionQ9X034192) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1203) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ9X034MF_01281193, 1, (STRLEN(?targetMotifMatchCigarQ9X034MF_01281193) - STRLEN(REPLACE(?targetMotifMatchCigarQ9X034MF_01281193, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1203), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ9X034MF_01281193, 1, (STRLEN(?targetMotifMatchCigarQ9X034MF_01281193) - STRLEN(REPLACE(?targetMotifMatchCigarQ9X034MF_01281193, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1203), '}'), '')))), '[^-]', ''))) AS ?step2204) . BIND(((?step2204 + ?targetMotifMatchRegionMatchBeginPositionMF_01281194) - 1) AS ?thisPositionOn67) . BIND(?thisPositionOn67 AS ?thisPositionOn68) . BIND(?this AS ?pfs1t205) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn67))) AS ?pfsb63) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn68))) AS ?pfse64) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn67, 1) = 'H')) . BIND(URI(CONCAT(STR(?this), '#MF_01281a62')) AS ?annotation62) . BIND(?this AS ?pfs61) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch210 faldo:location ?templateMotifSequenceMatchRegionQ9X034211 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ9X034213 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarQ9X034MF_01281206 . ?templateMotifSequenceMatchRegionQ9X034211 faldo:begin ?templateMotifSequenceMatchBeginQ9X034212 . ?templateMotifSequenceMatchBeginQ9X034212 faldo:position ?templateMotifSequenceMatchBeginPositionQ9X034207 ; faldo:reference isoform:Q9X034-1 . ?templateMotifSequenceProfileAlignmentOperationQ9X034213 edam:has_input signature:MF_01281 ; rdf:type edam:operation_0300 . ?targetMotifMatch214 faldo:location ?targetMotifMatchRegionMatch215 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01281217 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarQ9X034MF_01281208 . ?targetMotifMatchRegionMatch215 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01281216 . ?targetMotifMatchRegionMatchBeginMF_01281216 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01281209 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_01281217 edam:has_input signature:MF_01281 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ9X034MF_01281206, 1, (STRLEN(?templateMotifCigarQ9X034MF_01281206) - STRLEN(REPLACE(?templateMotifCigarQ9X034MF_01281206, CONCAT('^(?:-*[^-]){', STR(((203 - ?templateMotifSequenceMatchBeginPositionQ9X034207) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1218) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ9X034MF_01281208, 1, (STRLEN(?targetMotifMatchCigarQ9X034MF_01281208) - STRLEN(REPLACE(?targetMotifMatchCigarQ9X034MF_01281208, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1218), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ9X034MF_01281208, 1, (STRLEN(?targetMotifMatchCigarQ9X034MF_01281208) - STRLEN(REPLACE(?targetMotifMatchCigarQ9X034MF_01281208, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1218), '}'), '')))), '[^-]', ''))) AS ?step2219) . BIND(((?step2219 + ?targetMotifMatchRegionMatchBeginPositionMF_01281209) - 1) AS ?thisPositionOn75) . BIND(?thisPositionOn75 AS ?thisPositionOn76) . BIND(?this AS ?pfs1t220) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn75))) AS ?pfsb71) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn76))) AS ?pfse72) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn75, 1) = 'E')) . BIND(URI(CONCAT(STR(?this), '#MF_01281a70')) AS ?annotation70) . BIND(?this AS ?pfs69) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch225 faldo:location ?templateMotifSequenceMatchRegionQ9X034226 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ9X034228 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarQ9X034MF_01281221 . ?templateMotifSequenceMatchRegionQ9X034226 faldo:begin ?templateMotifSequenceMatchBeginQ9X034227 . ?templateMotifSequenceMatchBeginQ9X034227 faldo:position ?templateMotifSequenceMatchBeginPositionQ9X034222 ; faldo:reference isoform:Q9X034-1 . ?templateMotifSequenceProfileAlignmentOperationQ9X034228 edam:has_input signature:MF_01281 ; rdf:type edam:operation_0300 . ?targetMotifMatch229 faldo:location ?targetMotifMatchRegionMatch230 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01281232 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarQ9X034MF_01281223 . ?targetMotifMatchRegionMatch230 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01281231 . ?targetMotifMatchRegionMatchBeginMF_01281231 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01281224 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_01281232 edam:has_input signature:MF_01281 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ9X034MF_01281221, 1, (STRLEN(?templateMotifCigarQ9X034MF_01281221) - STRLEN(REPLACE(?templateMotifCigarQ9X034MF_01281221, CONCAT('^(?:-*[^-]){', STR(((279 - ?templateMotifSequenceMatchBeginPositionQ9X034222) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1233) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ9X034MF_01281223, 1, (STRLEN(?targetMotifMatchCigarQ9X034MF_01281223) - STRLEN(REPLACE(?targetMotifMatchCigarQ9X034MF_01281223, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1233), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ9X034MF_01281223, 1, (STRLEN(?targetMotifMatchCigarQ9X034MF_01281223) - STRLEN(REPLACE(?targetMotifMatchCigarQ9X034MF_01281223, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1233), '}'), '')))), '[^-]', ''))) AS ?step2234) . BIND(((?step2234 + ?targetMotifMatchRegionMatchBeginPositionMF_01281224) - 1) AS ?thisPositionOn83) . BIND(?thisPositionOn83 AS ?thisPositionOn84) . BIND(?this AS ?pfs1t235) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn83))) AS ?pfsb79) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn84))) AS ?pfse80) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn83, 1) = 'D')) . BIND(URI(CONCAT(STR(?this), '#MF_01281a78')) AS ?annotation78) . BIND(?this AS ?pfs77) . } OPTIONAL { ?this a up:Protein . VALUES ?supertaxon236 {taxon:183925 taxon:183939 taxon:224756 taxon:183988} ?this up:organism ?thisOrganism . ?thisOrganism rdfs:subClassOf+ ?supertaxon236 . BIND(?this AS ?case2) . BIND(URI(CONCAT(STR(?this), '#MF_01281a3')) AS ?name3) . BIND(URI(CONCAT(STR(?this), '#MF_01281a4')) AS ?name4) . BIND(URI(CONCAT(STR(?this), '#MF_01281a5')) AS ?name5) . BIND(URI(CONCAT(STR(?this), '#MF_01281a6')) AS ?name6) . } OPTIONAL { ?this a up:Protein . ?this up:organism ?thisOrganism . FILTER (! (EXISTS { VALUES ?supertaxon237 {taxon:183925 taxon:183939 taxon:224756 taxon:183988} ?thisOrganism rdfs:subClassOf+ ?supertaxon237 . })) . BIND(?this AS ?case7) . BIND(URI(CONCAT(STR(?this), '#MF_01281a8')) AS ?name8) . } }