CONSTRUCT { _:460312 up:source unirule:MF_01303 . _:460313 up:source unirule:MF_01303 . _:460314 up:source unirule:MF_01303 . _:460315 up:source unirule:MF_01303 . _:460316 up:source unirule:MF_01303 . _:460317 up:source unirule:MF_01303 . _:460318 up:source unirule:MF_01303 . _:460319 up:source unirule:MF_01303 . _:460320 up:source unirule:MF_01303 . _:460321 up:source unirule:MF_01303 . _:460322 up:source unirule:MF_01303 . _:460323 up:source unirule:MF_01303 . _:460324 up:source unirule:MF_01303 . _:460325 up:source unirule:MF_01303 . _:460326 up:source unirule:MF_01303 . _:460327 up:source unirule:MF_01303 . _:460328 up:source unirule:MF_01303 . _:460329 up:source unirule:MF_01303 . _:460330 up:source unirule:MF_01303 . _:460331 up:source unirule:MF_01303 . _:460332 up:source unirule:MF_01303 . _:460333 up:source unirule:MF_01303 . _:460334 up:source unirule:MF_01303 . _:460335 up:source unirule:MF_01303 . _:460336 up:source unirule:MF_01303 . _:460337 up:source unirule:MF_01303 . _:460338 up:source unirule:MF_01303 . _:460339 up:source unirule:MF_01303 . _:460340 up:source unirule:MF_01303 . _:460341 up:source unirule:MF_01303 . _:460342 up:source unirule:MF_01303 . _:460343 up:source unirule:MF_01303 . _:460344 up:source unirule:MF_01303 . _:460345 up:source unirule:MF_01303 . _:460346 up:source unirule:MF_01303 . ?this up:alternativeName ?name1 , ?name2 , ?name3 , ?name4 ; up:annotation ?annotation6 , ?annotation8 ; up:classifiedWith GO:0009055 , GO:0015979 , keyword:249 , keyword:408 , keyword:411 , keyword:472 , keyword:479 , keyword:4 , keyword:560 , keyword:602 , keyword:603 , keyword:677 , keyword:813 ; up:recommendedName ?name0 . ?name0 up:ecName '1.97.1.12' ; up:fullName 'Photosystem I iron-sulfur center' ; rdf:type up:Structured_Name . ?name1 up:fullName '9 kDa polypeptide' ; rdf:type up:Structured_Name . ?name2 up:fullName 'PSI-C' ; rdf:type up:Structured_Name . ?name3 up:fullName 'Photosystem I subunit VII' ; rdf:type up:Structured_Name . ?name4 up:fullName 'PsaC' ; rdf:type up:Structured_Name . ?gene5 skos:prefLabel 'psaC' . ?annotation6 up:activity ?activity7 ; rdf:type up:Catalytic_Activity_Annotation . ?activity7 up:catalyticActivity <http://rdf.rhea-db.org/30407>; up:enzymeClass <http://purl.uniprot.org/enzyme/1.97.1.12>. ?annotation8 up:cofactor chebi:49883 ; rdf:type up:Cofactor_Annotation ; rdfs:comment 'Binds 2 [4Fe-4S] clusters. Cluster 2 is most probably the spectroscopically characterized electron acceptor FA and cluster 1 is most probably FB.' . ?case9 up:classifiedWith GO:0009535 . ?case10 up:classifiedWith keyword:1003 , keyword:997 . ?case11 up:classifiedWith keyword:793 . ?case13 up:classifiedWith GO:0005886 . ?case14 up:classifiedWith GO:0042651 . ?pfs16 up:annotation ?annotation17 . ?annotation17 faldo:begin ?pfsb18 ; faldo:end ?pfse19 ; up:ligand ?ligand20 ; rdf:type up:Binding_Site_Annotation . ?pfsb18 faldo:position ?thisPositionOn21 ; rdf:type faldo:ExactPosition . ?pfse19 faldo:position ?thisPositionOn22 ; rdf:type faldo:ExactPosition . ?ligand20 rdfs:subClassOf chebi:49883 . ?pfs23 up:annotation ?annotation24 . ?annotation24 faldo:begin ?pfsb25 ; faldo:end ?pfse26 ; up:ligand ?ligand27 ; rdf:type up:Binding_Site_Annotation . ?pfsb25 faldo:position ?thisPositionOn28 ; rdf:type faldo:ExactPosition . ?pfse26 faldo:position ?thisPositionOn29 ; rdf:type faldo:ExactPosition . ?ligand27 rdfs:subClassOf chebi:49883 . ?pfs30 up:annotation ?annotation31 . ?annotation31 faldo:begin ?pfsb32 ; faldo:end ?pfse33 ; up:ligand ?ligand34 ; rdf:type up:Binding_Site_Annotation . ?pfsb32 faldo:position ?thisPositionOn35 ; rdf:type faldo:ExactPosition . ?pfse33 faldo:position ?thisPositionOn36 ; rdf:type faldo:ExactPosition . ?ligand34 rdfs:subClassOf chebi:49883 . ?pfs37 up:annotation ?annotation38 . ?annotation38 faldo:begin ?pfsb39 ; faldo:end ?pfse40 ; up:ligand ?ligand41 ; rdf:type up:Binding_Site_Annotation . ?pfsb39 faldo:position ?thisPositionOn42 ; rdf:type faldo:ExactPosition . ?pfse40 faldo:position ?thisPositionOn43 ; rdf:type faldo:ExactPosition . ?ligand41 rdfs:subClassOf chebi:49883 . ?pfs44 up:annotation ?annotation45 . ?annotation45 faldo:begin ?pfsb46 ; faldo:end ?pfse47 ; up:ligand ?ligand48 ; rdf:type up:Binding_Site_Annotation . ?pfsb46 faldo:position ?thisPositionOn49 ; rdf:type faldo:ExactPosition . ?pfse47 faldo:position ?thisPositionOn50 ; rdf:type faldo:ExactPosition . ?ligand48 rdfs:subClassOf chebi:49883 . ?pfs51 up:annotation ?annotation52 . ?annotation52 faldo:begin ?pfsb53 ; faldo:end ?pfse54 ; up:ligand ?ligand55 ; rdf:type up:Binding_Site_Annotation . ?pfsb53 faldo:position ?thisPositionOn56 ; rdf:type faldo:ExactPosition . ?pfse54 faldo:position ?thisPositionOn57 ; rdf:type faldo:ExactPosition . ?ligand55 rdfs:subClassOf chebi:49883 . ?pfs58 up:annotation ?annotation59 . ?annotation59 faldo:begin ?pfsb60 ; faldo:end ?pfse61 ; up:ligand ?ligand62 ; rdf:type up:Binding_Site_Annotation . ?pfsb60 faldo:position ?thisPositionOn63 ; rdf:type faldo:ExactPosition . ?pfse61 faldo:position ?thisPositionOn64 ; rdf:type faldo:ExactPosition . ?ligand62 rdfs:subClassOf chebi:49883 . ?pfs65 up:annotation ?annotation66 . ?annotation66 faldo:begin ?pfsb67 ; faldo:end ?pfse68 ; up:ligand ?ligand69 ; rdf:type up:Binding_Site_Annotation . ?pfsb67 faldo:position ?thisPositionOn70 ; rdf:type faldo:ExactPosition . ?pfse68 faldo:position ?thisPositionOn71 ; rdf:type faldo:ExactPosition . ?ligand69 rdfs:subClassOf chebi:49883 . _:460347 a rdf:Statement ; up:attribution _:460312 ; rdf:subject ?this ; rdf:predicate up:recommendedName ; rdf:object ?name0 . _:460348 a rdf:Statement ; up:attribution _:460313 ; rdf:subject ?this ; rdf:predicate up:alternativeName ; rdf:object ?name1 . _:460349 a rdf:Statement ; up:attribution _:460314 ; rdf:subject ?this ; rdf:predicate up:alternativeName ; rdf:object ?name2 . _:460350 a rdf:Statement ; up:attribution _:460315 ; rdf:subject ?this ; rdf:predicate up:alternativeName ; rdf:object ?name3 . _:460351 a rdf:Statement ; up:attribution _:460316 ; rdf:subject ?this ; rdf:predicate up:alternativeName ; rdf:object ?name4 . _:460352 a rdf:Statement ; up:attribution _:460317 ; rdf:subject ?gene5 ; rdf:predicate up:encodedBy ; rdf:object ?gene5 . _:460353 a rdf:Statement ; up:attribution _:460318 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation6 . _:460354 a rdf:Statement ; up:attribution _:460319 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation8 . _:460355 a rdf:Statement ; up:attribution _:460320 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:4 . _:460356 a rdf:Statement ; up:attribution _:460321 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:249 . _:460357 a rdf:Statement ; up:attribution _:460322 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:408 . _:460358 a rdf:Statement ; up:attribution _:460323 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:411 . _:460359 a rdf:Statement ; up:attribution _:460324 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:472 . _:460360 a rdf:Statement ; up:attribution _:460325 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:479 . _:460361 a rdf:Statement ; up:attribution _:460326 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:602 . _:460362 a rdf:Statement ; up:attribution _:460327 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:603 . _:460363 a rdf:Statement ; up:attribution _:460328 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:677 . _:460364 a rdf:Statement ; up:attribution _:460329 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:813 . _:460365 a rdf:Statement ; up:attribution _:460330 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:560 . _:460366 a rdf:Statement ; up:attribution _:460331 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object GO:0009055 . _:460367 a rdf:Statement ; up:attribution _:460332 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object GO:0015979 . _:460368 a rdf:Statement ; up:attribution _:460333 ; rdf:subject ?case9 ; rdf:predicate up:classifiedWith ; rdf:object GO:0009535 . _:460369 a rdf:Statement ; up:attribution _:460334 ; rdf:subject ?case10 ; rdf:predicate up:classifiedWith ; rdf:object keyword:1003 . _:460370 a rdf:Statement ; up:attribution _:460335 ; rdf:subject ?case10 ; rdf:predicate up:classifiedWith ; rdf:object keyword:997 . _:460371 a rdf:Statement ; up:attribution _:460336 ; rdf:subject ?case11 ; rdf:predicate up:classifiedWith ; rdf:object keyword:793 . _:460372 a rdf:Statement ; up:attribution _:460337 ; rdf:subject ?case13 ; rdf:predicate up:classifiedWith ; rdf:object GO:0005886 . _:460373 a rdf:Statement ; up:attribution _:460338 ; rdf:subject ?case14 ; rdf:predicate up:classifiedWith ; rdf:object GO:0042651 . _:460374 a rdf:Statement ; up:source unirule:MF_01303 ; rdf:subject ?pfs16 ; rdf:predicate up:annotation ; rdf:object ?annotation17 . _:460375 a rdf:Statement ; up:attribution _:460339 ; rdf:subject ?pfs16 ; rdf:predicate up:annotation ; rdf:object ?annotation17 . _:460376 a rdf:Statement ; up:source unirule:MF_01303 ; rdf:subject ?pfs23 ; rdf:predicate up:annotation ; rdf:object ?annotation24 . _:460377 a rdf:Statement ; up:attribution _:460340 ; rdf:subject ?pfs23 ; rdf:predicate up:annotation ; rdf:object ?annotation24 . _:460378 a rdf:Statement ; up:source unirule:MF_01303 ; rdf:subject ?pfs30 ; rdf:predicate up:annotation ; rdf:object ?annotation31 . _:460379 a rdf:Statement ; up:attribution _:460341 ; rdf:subject ?pfs30 ; rdf:predicate up:annotation ; rdf:object ?annotation31 . _:460380 a rdf:Statement ; up:source unirule:MF_01303 ; rdf:subject ?pfs37 ; rdf:predicate up:annotation ; rdf:object ?annotation38 . _:460381 a rdf:Statement ; up:attribution _:460342 ; rdf:subject ?pfs37 ; rdf:predicate up:annotation ; rdf:object ?annotation38 . _:460382 a rdf:Statement ; up:source unirule:MF_01303 ; rdf:subject ?pfs44 ; rdf:predicate up:annotation ; rdf:object ?annotation45 . _:460383 a rdf:Statement ; up:attribution _:460343 ; rdf:subject ?pfs44 ; rdf:predicate up:annotation ; rdf:object ?annotation45 . _:460384 a rdf:Statement ; up:source unirule:MF_01303 ; rdf:subject ?pfs51 ; rdf:predicate up:annotation ; rdf:object ?annotation52 . _:460385 a rdf:Statement ; up:attribution _:460344 ; rdf:subject ?pfs51 ; rdf:predicate up:annotation ; rdf:object ?annotation52 . _:460386 a rdf:Statement ; up:source unirule:MF_01303 ; rdf:subject ?pfs58 ; rdf:predicate up:annotation ; rdf:object ?annotation59 . _:460387 a rdf:Statement ; up:attribution _:460345 ; rdf:subject ?pfs58 ; rdf:predicate up:annotation ; rdf:object ?annotation59 . _:460388 a rdf:Statement ; up:source unirule:MF_01303 ; rdf:subject ?pfs65 ; rdf:predicate up:annotation ; rdf:object ?annotation66 . _:460389 a rdf:Statement ; up:attribution _:460346 ; rdf:subject ?pfs65 ; rdf:predicate up:annotation ; rdf:object ?annotation66 . } WHERE { #baseURI: http://purl.uniprot.org/unirule/MF_01303 #Rule MF_01303 Created by:auchin on:2002-06-06 Modified by:ecastro on:2023-06-01 { ?this up:organism ?thisOrganism ; rdfs:seeAlso signature:MF_01303 . ?thisOrganism rdfs:subClassOf+ taxon:1117 . } UNION { ?this rdfs:seeAlso signature:MF_01303 . { ?this up:encodedIn up:Plastid . } UNION { ?this up:encodedIn up:Chloroplast . } UNION { ?this up:encodedIn up:Cyanelle . } UNION { ?this up:encodedIn up:Apicoplast . } UNION { ?this up:encodedIn up:Organellar_chromatophore . } UNION { ?this up:encodedIn up:Non-photosynthetic_plastid . } } BIND(URI(CONCAT(STR(?this), '#MF_01303a0')) AS ?name0) . BIND(URI(CONCAT(STR(?this), '#MF_01303a1')) AS ?name1) . BIND(URI(CONCAT(STR(?this), '#MF_01303a2')) AS ?name2) . BIND(URI(CONCAT(STR(?this), '#MF_01303a3')) AS ?name3) . BIND(URI(CONCAT(STR(?this), '#MF_01303a4')) AS ?name4) . BIND(URI(CONCAT(STR(?this), '#MF_01303a6')) AS ?annotation6) . BIND(URI(CONCAT(STR(?this), '#MF_01303a8')) AS ?annotation8) . OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch76 faldo:location ?templateMotifSequenceMatchRegionP0A41577 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0A41579 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP0A415MF_0130372 . ?templateMotifSequenceMatchRegionP0A41577 faldo:begin ?templateMotifSequenceMatchBeginP0A41578 . ?templateMotifSequenceMatchBeginP0A41578 faldo:position ?templateMotifSequenceMatchBeginPositionP0A41573 ; faldo:reference isoform:P0A415-1 . ?templateMotifSequenceProfileAlignmentOperationP0A41579 edam:has_input signature:MF_01303 ; rdf:type edam:operation_0300 . ?targetMotifMatch80 faldo:location ?targetMotifMatchRegionMatch81 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0130383 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP0A415MF_0130374 . ?targetMotifMatchRegionMatch81 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0130382 . ?targetMotifMatchRegionMatchBeginMF_0130382 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0130375 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_0130383 edam:has_input signature:MF_01303 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0A415MF_0130372, 1, (STRLEN(?templateMotifCigarP0A415MF_0130372) - STRLEN(REPLACE(?templateMotifCigarP0A415MF_0130372, CONCAT('^(?:-*[^-]){', STR(((11 - ?templateMotifSequenceMatchBeginPositionP0A41573) + 1)), '}'), '')))), '[a-z]', '')) AS ?step184) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0A415MF_0130374, 1, (STRLEN(?targetMotifMatchCigarP0A415MF_0130374) - STRLEN(REPLACE(?targetMotifMatchCigarP0A415MF_0130374, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step184), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0A415MF_0130374, 1, (STRLEN(?targetMotifMatchCigarP0A415MF_0130374) - STRLEN(REPLACE(?targetMotifMatchCigarP0A415MF_0130374, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step184), '}'), '')))), '[^-]', ''))) AS ?step285) . BIND(((?step285 + ?targetMotifMatchRegionMatchBeginPositionMF_0130375) - 1) AS ?thisPositionOn21) . BIND(?thisPositionOn21 AS ?thisPositionOn22) . BIND(?this AS ?pfs1t86) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn21))) AS ?pfsb18) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn22))) AS ?pfse19) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn21, 1) = 'C')) . BIND(URI(CONCAT(STR(?this), '#MF_01303a17')) AS ?annotation17) . BIND(?this AS ?pfs16) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch91 faldo:location ?templateMotifSequenceMatchRegionP0A41592 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0A41594 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP0A415MF_0130387 . ?templateMotifSequenceMatchRegionP0A41592 faldo:begin ?templateMotifSequenceMatchBeginP0A41593 . ?templateMotifSequenceMatchBeginP0A41593 faldo:position ?templateMotifSequenceMatchBeginPositionP0A41588 ; faldo:reference isoform:P0A415-1 . ?templateMotifSequenceProfileAlignmentOperationP0A41594 edam:has_input signature:MF_01303 ; rdf:type edam:operation_0300 . ?targetMotifMatch95 faldo:location ?targetMotifMatchRegionMatch96 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0130398 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP0A415MF_0130389 . ?targetMotifMatchRegionMatch96 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0130397 . ?targetMotifMatchRegionMatchBeginMF_0130397 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0130390 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_0130398 edam:has_input signature:MF_01303 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0A415MF_0130387, 1, (STRLEN(?templateMotifCigarP0A415MF_0130387) - STRLEN(REPLACE(?templateMotifCigarP0A415MF_0130387, CONCAT('^(?:-*[^-]){', STR(((14 - ?templateMotifSequenceMatchBeginPositionP0A41588) + 1)), '}'), '')))), '[a-z]', '')) AS ?step199) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0A415MF_0130389, 1, (STRLEN(?targetMotifMatchCigarP0A415MF_0130389) - STRLEN(REPLACE(?targetMotifMatchCigarP0A415MF_0130389, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step199), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0A415MF_0130389, 1, (STRLEN(?targetMotifMatchCigarP0A415MF_0130389) - STRLEN(REPLACE(?targetMotifMatchCigarP0A415MF_0130389, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step199), '}'), '')))), '[^-]', ''))) AS ?step2100) . BIND(((?step2100 + ?targetMotifMatchRegionMatchBeginPositionMF_0130390) - 1) AS ?thisPositionOn28) . BIND(?thisPositionOn28 AS ?thisPositionOn29) . BIND(?this AS ?pfs1t101) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn28))) AS ?pfsb25) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn29))) AS ?pfse26) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn28, 1) = 'C')) . BIND(URI(CONCAT(STR(?this), '#MF_01303a24')) AS ?annotation24) . BIND(?this AS ?pfs23) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch106 faldo:location ?templateMotifSequenceMatchRegionP0A415107 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0A415109 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP0A415MF_01303102 . ?templateMotifSequenceMatchRegionP0A415107 faldo:begin ?templateMotifSequenceMatchBeginP0A415108 . ?templateMotifSequenceMatchBeginP0A415108 faldo:position ?templateMotifSequenceMatchBeginPositionP0A415103 ; faldo:reference isoform:P0A415-1 . ?templateMotifSequenceProfileAlignmentOperationP0A415109 edam:has_input signature:MF_01303 ; rdf:type edam:operation_0300 . ?targetMotifMatch110 faldo:location ?targetMotifMatchRegionMatch111 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01303113 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP0A415MF_01303104 . ?targetMotifMatchRegionMatch111 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01303112 . ?targetMotifMatchRegionMatchBeginMF_01303112 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01303105 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_01303113 edam:has_input signature:MF_01303 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0A415MF_01303102, 1, (STRLEN(?templateMotifCigarP0A415MF_01303102) - STRLEN(REPLACE(?templateMotifCigarP0A415MF_01303102, CONCAT('^(?:-*[^-]){', STR(((17 - ?templateMotifSequenceMatchBeginPositionP0A415103) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1114) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0A415MF_01303104, 1, (STRLEN(?targetMotifMatchCigarP0A415MF_01303104) - STRLEN(REPLACE(?targetMotifMatchCigarP0A415MF_01303104, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1114), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0A415MF_01303104, 1, (STRLEN(?targetMotifMatchCigarP0A415MF_01303104) - STRLEN(REPLACE(?targetMotifMatchCigarP0A415MF_01303104, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1114), '}'), '')))), '[^-]', ''))) AS ?step2115) . BIND(((?step2115 + ?targetMotifMatchRegionMatchBeginPositionMF_01303105) - 1) AS ?thisPositionOn35) . BIND(?thisPositionOn35 AS ?thisPositionOn36) . BIND(?this AS ?pfs1t116) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn35))) AS ?pfsb32) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn36))) AS ?pfse33) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn35, 1) = 'C')) . BIND(URI(CONCAT(STR(?this), '#MF_01303a31')) AS ?annotation31) . BIND(?this AS ?pfs30) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch121 faldo:location ?templateMotifSequenceMatchRegionP0A415122 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0A415124 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP0A415MF_01303117 . ?templateMotifSequenceMatchRegionP0A415122 faldo:begin ?templateMotifSequenceMatchBeginP0A415123 . ?templateMotifSequenceMatchBeginP0A415123 faldo:position ?templateMotifSequenceMatchBeginPositionP0A415118 ; faldo:reference isoform:P0A415-1 . ?templateMotifSequenceProfileAlignmentOperationP0A415124 edam:has_input signature:MF_01303 ; rdf:type edam:operation_0300 . ?targetMotifMatch125 faldo:location ?targetMotifMatchRegionMatch126 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01303128 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP0A415MF_01303119 . ?targetMotifMatchRegionMatch126 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01303127 . ?targetMotifMatchRegionMatchBeginMF_01303127 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01303120 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_01303128 edam:has_input signature:MF_01303 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0A415MF_01303117, 1, (STRLEN(?templateMotifCigarP0A415MF_01303117) - STRLEN(REPLACE(?templateMotifCigarP0A415MF_01303117, CONCAT('^(?:-*[^-]){', STR(((21 - ?templateMotifSequenceMatchBeginPositionP0A415118) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1129) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0A415MF_01303119, 1, (STRLEN(?targetMotifMatchCigarP0A415MF_01303119) - STRLEN(REPLACE(?targetMotifMatchCigarP0A415MF_01303119, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1129), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0A415MF_01303119, 1, (STRLEN(?targetMotifMatchCigarP0A415MF_01303119) - STRLEN(REPLACE(?targetMotifMatchCigarP0A415MF_01303119, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1129), '}'), '')))), '[^-]', ''))) AS ?step2130) . BIND(((?step2130 + ?targetMotifMatchRegionMatchBeginPositionMF_01303120) - 1) AS ?thisPositionOn42) . BIND(?thisPositionOn42 AS ?thisPositionOn43) . BIND(?this AS ?pfs1t131) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn42))) AS ?pfsb39) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn43))) AS ?pfse40) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn42, 1) = 'C')) . BIND(URI(CONCAT(STR(?this), '#MF_01303a38')) AS ?annotation38) . BIND(?this AS ?pfs37) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch136 faldo:location ?templateMotifSequenceMatchRegionP0A415137 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0A415139 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP0A415MF_01303132 . ?templateMotifSequenceMatchRegionP0A415137 faldo:begin ?templateMotifSequenceMatchBeginP0A415138 . ?templateMotifSequenceMatchBeginP0A415138 faldo:position ?templateMotifSequenceMatchBeginPositionP0A415133 ; faldo:reference isoform:P0A415-1 . ?templateMotifSequenceProfileAlignmentOperationP0A415139 edam:has_input signature:MF_01303 ; rdf:type edam:operation_0300 . ?targetMotifMatch140 faldo:location ?targetMotifMatchRegionMatch141 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01303143 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP0A415MF_01303134 . ?targetMotifMatchRegionMatch141 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01303142 . ?targetMotifMatchRegionMatchBeginMF_01303142 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01303135 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_01303143 edam:has_input signature:MF_01303 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0A415MF_01303132, 1, (STRLEN(?templateMotifCigarP0A415MF_01303132) - STRLEN(REPLACE(?templateMotifCigarP0A415MF_01303132, CONCAT('^(?:-*[^-]){', STR(((48 - ?templateMotifSequenceMatchBeginPositionP0A415133) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1144) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0A415MF_01303134, 1, (STRLEN(?targetMotifMatchCigarP0A415MF_01303134) - STRLEN(REPLACE(?targetMotifMatchCigarP0A415MF_01303134, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1144), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0A415MF_01303134, 1, (STRLEN(?targetMotifMatchCigarP0A415MF_01303134) - STRLEN(REPLACE(?targetMotifMatchCigarP0A415MF_01303134, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1144), '}'), '')))), '[^-]', ''))) AS ?step2145) . BIND(((?step2145 + ?targetMotifMatchRegionMatchBeginPositionMF_01303135) - 1) AS ?thisPositionOn49) . BIND(?thisPositionOn49 AS ?thisPositionOn50) . BIND(?this AS ?pfs1t146) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn49))) AS ?pfsb46) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn50))) AS ?pfse47) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn49, 1) = 'C')) . BIND(URI(CONCAT(STR(?this), '#MF_01303a45')) AS ?annotation45) . BIND(?this AS ?pfs44) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch151 faldo:location ?templateMotifSequenceMatchRegionP0A415152 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0A415154 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP0A415MF_01303147 . ?templateMotifSequenceMatchRegionP0A415152 faldo:begin ?templateMotifSequenceMatchBeginP0A415153 . ?templateMotifSequenceMatchBeginP0A415153 faldo:position ?templateMotifSequenceMatchBeginPositionP0A415148 ; faldo:reference isoform:P0A415-1 . ?templateMotifSequenceProfileAlignmentOperationP0A415154 edam:has_input signature:MF_01303 ; rdf:type edam:operation_0300 . ?targetMotifMatch155 faldo:location ?targetMotifMatchRegionMatch156 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01303158 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP0A415MF_01303149 . ?targetMotifMatchRegionMatch156 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01303157 . ?targetMotifMatchRegionMatchBeginMF_01303157 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01303150 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_01303158 edam:has_input signature:MF_01303 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0A415MF_01303147, 1, (STRLEN(?templateMotifCigarP0A415MF_01303147) - STRLEN(REPLACE(?templateMotifCigarP0A415MF_01303147, CONCAT('^(?:-*[^-]){', STR(((51 - ?templateMotifSequenceMatchBeginPositionP0A415148) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1159) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0A415MF_01303149, 1, (STRLEN(?targetMotifMatchCigarP0A415MF_01303149) - STRLEN(REPLACE(?targetMotifMatchCigarP0A415MF_01303149, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1159), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0A415MF_01303149, 1, (STRLEN(?targetMotifMatchCigarP0A415MF_01303149) - STRLEN(REPLACE(?targetMotifMatchCigarP0A415MF_01303149, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1159), '}'), '')))), '[^-]', ''))) AS ?step2160) . BIND(((?step2160 + ?targetMotifMatchRegionMatchBeginPositionMF_01303150) - 1) AS ?thisPositionOn56) . BIND(?thisPositionOn56 AS ?thisPositionOn57) . BIND(?this AS ?pfs1t161) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn56))) AS ?pfsb53) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn57))) AS ?pfse54) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn56, 1) = 'C')) . BIND(URI(CONCAT(STR(?this), '#MF_01303a52')) AS ?annotation52) . BIND(?this AS ?pfs51) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch166 faldo:location ?templateMotifSequenceMatchRegionP0A415167 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0A415169 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP0A415MF_01303162 . ?templateMotifSequenceMatchRegionP0A415167 faldo:begin ?templateMotifSequenceMatchBeginP0A415168 . ?templateMotifSequenceMatchBeginP0A415168 faldo:position ?templateMotifSequenceMatchBeginPositionP0A415163 ; faldo:reference isoform:P0A415-1 . ?templateMotifSequenceProfileAlignmentOperationP0A415169 edam:has_input signature:MF_01303 ; rdf:type edam:operation_0300 . ?targetMotifMatch170 faldo:location ?targetMotifMatchRegionMatch171 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01303173 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP0A415MF_01303164 . ?targetMotifMatchRegionMatch171 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01303172 . ?targetMotifMatchRegionMatchBeginMF_01303172 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01303165 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_01303173 edam:has_input signature:MF_01303 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0A415MF_01303162, 1, (STRLEN(?templateMotifCigarP0A415MF_01303162) - STRLEN(REPLACE(?templateMotifCigarP0A415MF_01303162, CONCAT('^(?:-*[^-]){', STR(((54 - ?templateMotifSequenceMatchBeginPositionP0A415163) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1174) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0A415MF_01303164, 1, (STRLEN(?targetMotifMatchCigarP0A415MF_01303164) - STRLEN(REPLACE(?targetMotifMatchCigarP0A415MF_01303164, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1174), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0A415MF_01303164, 1, (STRLEN(?targetMotifMatchCigarP0A415MF_01303164) - STRLEN(REPLACE(?targetMotifMatchCigarP0A415MF_01303164, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1174), '}'), '')))), '[^-]', ''))) AS ?step2175) . BIND(((?step2175 + ?targetMotifMatchRegionMatchBeginPositionMF_01303165) - 1) AS ?thisPositionOn63) . BIND(?thisPositionOn63 AS ?thisPositionOn64) . BIND(?this AS ?pfs1t176) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn63))) AS ?pfsb60) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn64))) AS ?pfse61) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn63, 1) = 'C')) . BIND(URI(CONCAT(STR(?this), '#MF_01303a59')) AS ?annotation59) . BIND(?this AS ?pfs58) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch181 faldo:location ?templateMotifSequenceMatchRegionP0A415182 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0A415184 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP0A415MF_01303177 . ?templateMotifSequenceMatchRegionP0A415182 faldo:begin ?templateMotifSequenceMatchBeginP0A415183 . ?templateMotifSequenceMatchBeginP0A415183 faldo:position ?templateMotifSequenceMatchBeginPositionP0A415178 ; faldo:reference isoform:P0A415-1 . ?templateMotifSequenceProfileAlignmentOperationP0A415184 edam:has_input signature:MF_01303 ; rdf:type edam:operation_0300 . ?targetMotifMatch185 faldo:location ?targetMotifMatchRegionMatch186 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01303188 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP0A415MF_01303179 . ?targetMotifMatchRegionMatch186 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01303187 . ?targetMotifMatchRegionMatchBeginMF_01303187 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01303180 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_01303188 edam:has_input signature:MF_01303 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0A415MF_01303177, 1, (STRLEN(?templateMotifCigarP0A415MF_01303177) - STRLEN(REPLACE(?templateMotifCigarP0A415MF_01303177, CONCAT('^(?:-*[^-]){', STR(((58 - ?templateMotifSequenceMatchBeginPositionP0A415178) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1189) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0A415MF_01303179, 1, (STRLEN(?targetMotifMatchCigarP0A415MF_01303179) - STRLEN(REPLACE(?targetMotifMatchCigarP0A415MF_01303179, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1189), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0A415MF_01303179, 1, (STRLEN(?targetMotifMatchCigarP0A415MF_01303179) - STRLEN(REPLACE(?targetMotifMatchCigarP0A415MF_01303179, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1189), '}'), '')))), '[^-]', ''))) AS ?step2190) . BIND(((?step2190 + ?targetMotifMatchRegionMatchBeginPositionMF_01303180) - 1) AS ?thisPositionOn70) . BIND(?thisPositionOn70 AS ?thisPositionOn71) . BIND(?this AS ?pfs1t191) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn70))) AS ?pfsb67) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn71))) AS ?pfse68) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn70, 1) = 'C')) . BIND(URI(CONCAT(STR(?this), '#MF_01303a66')) AS ?annotation66) . BIND(?this AS ?pfs65) . } OPTIONAL { ?this a up:Protein . { ?this up:encodedIn up:Plastid . } UNION { ?this up:encodedIn up:Chloroplast . } BIND(?this AS ?case9) . } OPTIONAL { ?this a up:Protein . ?this up:organism ?thisOrganism . ?thisOrganism rdfs:subClassOf+ taxon:33071 . BIND(?this AS ?case10) . } OPTIONAL { ?this a up:Protein . ?this up:organism ?thisOrganism . FILTER (! (EXISTS { ?thisOrganism rdfs:subClassOf+ taxon:33071 . })) . BIND(?this AS ?case11) . } OPTIONAL { ?this a up:Protein . ?this up:organism ?thisOrganism . ?thisOrganism rdfs:subClassOf+ taxon:35493 . { ?this up:encodedIn up:Plastid . } UNION { ?this up:encodedIn up:Chloroplast . } BIND(?this AS ?case12) . } OPTIONAL { ?this a up:Protein . ?this up:organism ?thisOrganism . ?thisOrganism rdfs:subClassOf+ taxon:33071 . FILTER (! (EXISTS { { ?this up:encodedIn up:Plastid . } UNION { ?this up:encodedIn up:Chloroplast . } })) . BIND(?this AS ?case13) . } OPTIONAL { ?this a up:Protein . ?this up:organism ?thisOrganism . FILTER (! (EXISTS { { ?this up:encodedIn up:Plastid . } UNION { ?this up:encodedIn up:Chloroplast . } })) . FILTER (! (EXISTS { ?thisOrganism rdfs:subClassOf+ taxon:33071 . })) . BIND(?this AS ?case14) . } OPTIONAL { ?this a up:Protein . { ?this up:organism ?thisOrganism . { ?this up:encodedIn up:Plastid . } UNION { ?this up:encodedIn up:Chloroplast . } FILTER (! (EXISTS { ?thisOrganism rdfs:subClassOf+ taxon:35493 . })) . } UNION { ?this up:organism ?thisOrganism . ?thisOrganism rdfs:subClassOf+ taxon:1117 . } BIND(?this AS ?case15) . } }